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From 09/28/2020 to 10/27/2020

10/27/2020

01:44 PM Revision 575c50be (taxeditor): catch widget is disposed
Katja Luther
01:09 PM Revision c64a02e7 (cdmlib): ref #69554: fix test
Katja Luther
11:58 AM Revision 9f7f7692 (cdmlib): ref #69554: adapt cdmLight export
Katja Luther
11:14 AM bug #9263 (In Progress): Unify case for type designation status
NKo: ich würde sagen, wenn es als Satzanfang ausgegeben wird, dann groß, sonst klein. Auf gar keinen Fall abkürzen.
...
Andreas Müller

10/26/2020

11:23 AM bug #9264 (Closed): Flag for toggle button for linking taxon with navigator looses/switch value w...
mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat (H...
Katja Luther

10/24/2020

09:28 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
this ticket duplicates #9262 Andreas Müller

10/23/2020

11:00 PM Revision f36cf20b (cdmlib): ref #9262 further cleanup citation handling in TypeDesignationSetMana...
Andreas Müller
10:55 PM Revision f323d2c8 (cdmlib): cleanup
Andreas Müller
10:55 PM Revision f9f1f4a3 (cdmlib): ref #9262 further cleanup citation handling in TypeDesignationSetManager
Andreas Müller
10:54 PM Revision f6cadc73 (cdmlib): cleanup TypeDesignationSetManager
Andreas Müller
10:49 PM Revision ef013705 (cdmlib): ref #9262 fix failing test by adding lectotype to name type status in...
Andreas Müller
08:48 PM Revision 085f44ab (cdmlib): ref #9262 unify buildString methods in TypeDesignationSetManager and ...
Andreas Müller
07:48 PM Revision b7900258 (cdmlib): remove deprecated method from TypeDesignationSetManager
Andreas Müller
06:00 PM bug #9263 (Closed): Unify case for type designation status
Current csv files use lower case for NameTypeDesignationStatus and upper case for SpecimenTypeDesignationStatus. This... Andreas Müller
05:43 PM Revision bdb70df7 (cdmlib): ref #9262 javadoc link to ticket
Andreas Müller
05:42 PM Revision ff136ac1 (cdmlib): correct rank for name type tests in TypeDesignationSetManagerTest
Andreas Müller
05:38 PM Revision 742c4c12 (cdmlib): ref #9262 add test for lecto-nametype with designated by and fide
Andreas Müller
04:49 PM Revision 0a854685 (cdm-dataportal): Merge branch 'occurrences-in-tables' into develop
Andreas Kohlbecker
04:49 PM Revision e809ac5d (cdm-dataportal): ref #7599, ref #8419 specimen tree view with nested tables
Andreas Kohlbecker
03:25 PM Revision 38cdb834 (cdmlib): ref #9262 move lectotype citation for name types in stringify(NameTyp...
Andreas Müller
03:19 PM Revision e346d276 (cdmlib): cleanup
Andreas Müller
11:55 AM Revision 0ad005e1 (cdmlib): ref #9262 move designated by out of brackets
Andreas Müller
11:53 AM Revision 9bcc56f3 (cdmlib): cleanup
Andreas Müller
08:30 AM Revision 79180ba0 (cdm-vaadin): ref #7936 removing handler for redmine messaging exceptions
Andreas Kohlbecker

10/22/2020

07:14 PM Revision 9eab4a32 (cdmlib): ref #9262 fix et. al position in cdmlight
Andreas Müller
06:51 PM Revision f2ab76ab (cdmlib): fix linux compilation issue
Andreas Müller
06:46 PM Revision 5237bd86 (cdmlib): improve javadoc link
Andreas Müller
06:42 PM Revision 30190957 (cdmlib): ref #9262 fix fide and designated by handling for cdmlight export and...
Andreas Müller
06:28 PM Revision bef3ccce (cdmlib): cleanup
Andreas Müller
06:08 PM Revision 413ff959 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0....
Andreas Kohlbecker
04:57 PM Revision d0a7386d (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0....
Andreas Kohlbecker
04:31 PM Revision eea35c81 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0....
Andreas Kohlbecker
04:23 PM Revision 6b834cf6 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0....
Andreas Kohlbecker
04:11 PM Revision 9c9b6874 (cdmlib): ref #9252 adding MediaSpecimen.media to DerivedUnitDTO.listOfMedia
Andreas Kohlbecker
04:07 PM Revision a009dfe6 (cdmlib): fixing compilation problem stemming from outdated javadoc @link refer...
Andreas Kohlbecker
04:07 PM Revision 9db34f82 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0
Andreas Kohlbecker
02:31 PM Revision 99bcfa16 (cdmlib): cleanup
Andreas Müller
01:40 PM Revision 772c2fdb (cdmlib): improve generics for TypeDesignationSetManager TypedEntityReference
Andreas Müller
01:40 PM Revision a06014f5 (cdmlib): cleanup
Andreas Müller
01:28 PM Revision 3cea6e15 (cdm-dataportal): ref #8419 using tables to show occurrence details
Andreas Kohlbecker
01:28 PM Revision 5370c90a (cdm-dataportal): ref #8419 table headers with internal links
Andreas Kohlbecker
01:26 PM Revision d7d8ad90 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
12:45 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and ...
Mail WGB 2020-10-22:
1. ~~Fehlerhafter Literatur-Output – zwei Autoren + et al. statt Erstautor + et al., siehe an...
Andreas Müller
12:15 PM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
Andreas Kohlbecker
12:15 PM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
Andreas Kohlbecker
12:15 PM bug #9261 (Resolved): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
Applied in changeset commit:cdmlib|8728f23bae0e8758c46f09837af01070922d1d41. Andreas Kohlbecker
11:35 AM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
http://api.cybertaxonomy.org/caryophyllales/portal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749/taxonNodes.json fails w... Andreas Kohlbecker
12:14 PM Revision 8728f23b (cdmlib): fix #9261 extending init strategy to avoid LIEs in TaxonController
Andreas Kohlbecker

10/21/2020

02:17 PM Revision 6e0129cb (cdm-dataportal): ref #9260 avoiding fatal error in case of web service failure
Andreas Kohlbecker
02:13 PM Revision 098e4095 (cdm-dataportal): ref #9259 adapting portal
Andreas Kohlbecker
01:09 PM Revision 63503e49 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
12:42 PM Revision 8a788533 (cdm-dataportal): fixing bug in layer bounds calculation - 2
Andreas Kohlbecker
12:06 PM Revision b14f308a (cdm-dataportal): fixing bug in layer bounds calculation
Andreas Kohlbecker
10:02 AM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
http://caryophyllales.org/cdm_dataportal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749
~~~
Recoverable fatal error: ...
Andreas Kohlbecker

10/20/2020

09:27 PM Revision 05b014a3 (taxeditor): revert "preliminary throw exception for invalid URIs"
Andreas Müller
07:49 PM Revision 27769d89 (taxeditor): fix NPE and ConcurrentModifiationException in removeLabelException()
Andreas Müller
07:18 PM Revision b4543dac (taxeditor): preliminary throw exception for invalid URIs
Andreas Müller
07:18 PM Revision 6ac89129 (taxeditor): cleanup
Andreas Müller
06:24 PM Revision 9de7a9ea (cdmlib): remove redmine-java-api version from parent pom
Andreas Müller
06:20 PM Revision 7e05cce6 (cdmlib): remove 2 deprecated methods from ImagesUtility
Andreas Müller
06:20 PM Revision dc9e54ed (cdmlib): cleanup
Andreas Müller
05:14 PM Revision 58618089 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
05:02 PM Revision cfef9b81 (cdm-dataportal): adapting map extent calculation to modified behavior of area.php
Andreas Kohlbecker
02:56 PM Revision b1f25a11 (cdm-dataportal): ref #8419 speciemen tree view: defined order of child derivat...
Andreas Kohlbecker
02:35 PM Revision 17853a0b (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
02:35 PM Revision 4bf94c23 (cdm-dataportal): sending bbox to rest_gen.php only transformed for EPSG4326 - ...
Andreas Kohlbecker
02:15 PM Revision dc0f7c29 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
01:53 PM Revision dab257a8 (cdm-dataportal): ref #8419 speciemen tree view: defined order of child derivat...
Andreas Kohlbecker
01:41 PM Revision 0a1cb264 (cdm-dataportal): test method comments
Andreas Kohlbecker
01:13 PM task #8081: Complete removal of redmine communication hub instances
all code has been removed now! see #7936 Andreas Kohlbecker
01:12 PM task #7315 (Rejected): remove workaround RedmineTransportAccessor
no longer needed, since the redmine message hub has been completely rejected Andreas Kohlbecker
01:10 PM bug #7936 (Closed): Consider complete removal of redmine communication hub code
Andreas Kohlbecker
01:08 PM Revision 2ee5f0e4 (cdmlib): ref #7936 removing redmine-api dependency and unused ExternalServiceE...
Andreas Kohlbecker
01:08 PM Revision 03f21108 (cdmlib): ref #7936 full removal of redmine communication hub code
Andreas Kohlbecker
01:07 PM Revision d0db04ae (taxeditor): ref #7936 removing redmine-api dependency from taxeditor
Andreas Kohlbecker
11:50 AM Revision 1f22b30d (cdm-dataportal): sending bbox to rest_gen.php only transformed for EPSG4326
Andreas Kohlbecker
11:37 AM Revision af612856 (cdmlib): archive old schema updaters (combine packages)
Andreas Müller
11:30 AM Revision 3c3d7701 (cdm-dataportal): ref #9259 adapting dataportal to modified term serialization
Andreas Kohlbecker
10:20 AM Revision 55344030 (taxeditor): fix NPE in TypeDesignationSection
Andreas Müller
10:20 AM Revision ced08e17 (taxeditor): cleanup
Andreas Müller
07:54 AM Revision da072b17 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
07:45 AM Revision 41910d88 (cdm-dataportal): fixing exuecution order problem in test class and reverting f...
Andreas Kohlbecker
07:35 AM Revision 8031902e (cdm-dataportal): ref #8419 supressing most significantIndentifier in specimen ...
Andreas Kohlbecker

10/19/2020

11:29 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
This ticket needs to be fixed urgently as it makes the specimen tree editor impossible to use Andreas Müller
10:44 PM Revision 604416f3 (taxeditor): ref #9252 adapting Taxeditor to modified DTOs - 3
Andreas Kohlbecker
09:58 PM Revision 7b687a41 (cdm-dataportal): adapting to latest dto changes and to updated render template...
Andreas Kohlbecker
09:56 PM Revision 33d3036f (cdmlib): ref #9252 adding mostSignificantIdentifier to DerivedUnitDTO
Andreas Kohlbecker
09:41 PM Revision d9b0c185 (cdmlib): ref #9252 using TypedEntityReference for DerivedUnitDTO.associatedTaxa
Andreas Kohlbecker
07:50 PM Revision 7502200f (taxeditor): ref #9252 adapting Taxeditor to modified DTOs - 2
Andreas Kohlbecker
05:04 PM bug #6757: AbcdImportWizard has all configurator flags set to false
Is this still an open issue? If yes we should fix it soon (probably a no-brainer), if not, we should close this ticke... Andreas Müller
04:54 PM Revision 107fdc7d (taxeditor): ref #9204 update junit to 4.13.1 in TaxEditor (cont.)
Andreas Müller
04:28 PM Revision f0d35b30 (cdmlib): try to remove direct dependencies (junit and log4j) from cdmlib-paren...
Andreas Müller
04:20 PM Revision 82e4e13a (cdmlib): ref #9204 update junit to 4.13.1 in cdmlib
Andreas Müller
04:19 PM Revision 1879274b (taxeditor): ref #9204 update junit to 4.13.1 in TaxEditor
Andreas Müller
04:09 PM Revision 0eb187f5 (taxeditor): ref #9252 adapting Taxeditor to moodified DTOs
Andreas Kohlbecker
04:08 PM Revision e1779d28 (cdmlib): ref #9252 adding id as propery to recover lost UuidAndTitleCache pro...
Andreas Kohlbecker
04:06 PM Revision ff730337 (cdmlib): try to remove direct dependencies (junit and log4j) from cdmlib-parent
Andreas Müller
02:09 PM Revision afcf5f85 (cdmlib): ref #9252 maving fieldUnitDTO creation into transactional context - f...
Andreas Kohlbecker
02:05 PM task #9252 (Resolved): Harmonize SpecimenOrOberservationBase related DTOs
should be solved now, needs review Andreas Kohlbecker
02:05 PM Revision de30431b (cdmlib): ref #9252 maving fieldUnitDTO creation into transactional context
Andreas Kohlbecker
01:55 PM Revision a870ef69 (cdmlib): try to fix failing (in suite) test (cont.)
Andreas Müller
01:49 PM Revision 41c4bff5 (cdmlib): try to fix failing (in suite) test (cont.)
Andreas Müller
01:49 PM Revision e9fcfee8 (cdmlib): cleanup
Andreas Müller
01:33 PM Revision e5f49216 (cdmlib): try to fix failing (in suite) test
Andreas Müller
01:33 PM Revision 28339232 (cdmlib): remove some further null values from test data
Andreas Müller
01:32 PM Revision 9e6f7278 (cdmlib): cleanup
Andreas Müller
01:15 PM Revision c8c5fe7b (cdmlib): cleanup
Andreas Müller
01:13 PM Revision d5b2e2e8 (cdm-dataportal): ref #8419 fixing bug render hints usage and new render templa...
Andreas Kohlbecker
01:13 PM Revision 293a199b (cdmlib): remove some null values from test data
Andreas Müller
12:36 PM Revision d945b5ca (cdm-dataportal): forcing untiled maps for all wms requests - setting ratio for...
Andreas Kohlbecker
12:29 PM Revision a9acb2d4 (cdm-dataportal): forcing untiled maps for all wms requests
Andreas Kohlbecker
09:56 AM task #9259 (Closed): reduce fields in TermBase json serializations
Andreas Kohlbecker
09:55 AM task #9259 (Resolved): reduce fields in TermBase json serializations
Applied in changeset commit:cdmlib|3ae4f12f20159b7e0ddb04c68f4bfc5fb17d5481. Andreas Kohlbecker
09:43 AM task #9259 (In Progress): reduce fields in TermBase json serializations
Andreas Kohlbecker
09:43 AM task #9259 (Closed): reduce fields in TermBase json serializations
The fields in json serializations produced by the TermBaseBeanProcessor can be reduced.
here an example of the cur...
Andreas Kohlbecker
09:55 AM Revision 3ae4f12f (cdmlib): fix #9259 reducing fields in TermBase json serializations
Andreas Kohlbecker
09:40 AM Revision ce9ce745 (cdm-dataportal): ref #9252 adapting test
Andreas Kohlbecker
09:39 AM Revision 56a041f8 (cdm-dataportal): ref #8419 specimen tree view: display of specimen type design...
Andreas Kohlbecker
09:38 AM Revision 71d2f44c (cdm-dataportal): fixing outdated curly braces array syntax
Andreas Kohlbecker
08:59 AM Revision 2de25dc7 (cdm-dataportal): fixing outdated curly braces array syntax
Andreas Kohlbecker
08:28 AM Revision d1088a53 (cdm-dataportal): ref #9252 adapting portal to latest DTO changes
Andreas Kohlbecker
08:27 AM Revision 7e0e6396 (cdmlib): ref #9252 using DefinedTermBase for term fields in DTOs and TypedEdit...
Andreas Kohlbecker

10/16/2020

06:02 PM Revision 2e893626 (cdm-dataportal): ref #9252 localizing kind of unit in SpecimenOrObservationBas...
Andreas Kohlbecker
06:01 PM Revision c15eb727 (cdmlib): ref #9252 localizing kind of unit in SpecimenOrObservationBaseDTO
Andreas Kohlbecker
01:50 PM feature request #9258 (Closed): Use Partial for date in FieldUnitDTO
Andreas Kohlbecker
01:50 PM feature request #9258 (Resolved): Use Partial for date in FieldUnitDTO
Applied in changeset commit:cdmlib|e0089f681023c823ee9424dfe2ac550065414474. Andreas Kohlbecker
12:11 PM feature request #9258 (Closed): Use Partial for date in FieldUnitDTO
FieldUnitDTO contains the date as pure string this has at least two problems:
* FieldUnitDTOs can not be reliably ...
Andreas Kohlbecker
01:50 PM Revision e0089f68 (cdmlib): fix #9258 using Partial for date field in FieldUnitDTO
Andreas Kohlbecker
01:06 PM Revision afead756 (cdm-dataportal): adapting portal and test to new FieldDTO.specimenIdentifier f...
Andreas Kohlbecker
01:05 PM Revision 7eb0d308 (cdm-dataportal): adapting portal and test to new FieldDTO.specimenIdentifier f...
Andreas Kohlbecker
12:06 PM Revision eacf1ee2 (cdm-dataportal): ref #9252, ref #8423 adapting specimen tree view to fixed der...
Andreas Kohlbecker
12:04 PM Revision 69b6c2b3 (cdmlib): ref #8419 ref #9252 introducing specimenIdentifier field in DTO and e...
Andreas Kohlbecker
12:03 PM task #9253 (In Progress): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
Andreas Kohlbecker
08:59 AM bug #8423 (Resolved): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths wh...
Andreas Kohlbecker
08:59 AM bug #8423 (Closed): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when...
Andreas Kohlbecker
08:58 AM Revision e4979fe2 (cdmlib): ref #8423 OccurrenceServiceImpl.findFieldUnitDTO() : fixing merge pro...
Andreas Kohlbecker

10/15/2020

09:34 PM Revision 5d299395 (cdmlib): ref #9253 cleaning up caller of OccurrenceServiceImpl.findFieldUnitDT...
Andreas Kohlbecker
09:30 PM bug #8423 (In Progress): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths...
Andreas Kohlbecker
09:26 PM Revision 864cab25 (cdmlib): ref #8423 raising log level of problematic situation and code cleaning
Andreas Kohlbecker
05:40 PM Revision b1a675d1 (cdmlib): ref #8423 ref #9253, ref #9252 fixing duplicate addition of DerivedUn...
Andreas Kohlbecker
05:28 PM Revision 970272ed (cdmlib): ref #9252 basing SpecimenOrObservationBaseDTO on TypedEntityReference
Andreas Kohlbecker
04:48 PM Revision 7d539adb (cdm-dataportal): ref #9252 supressing FieldUnitDTO fields in specimen tree view
Andreas Kohlbecker
04:13 PM Revision 5830e16a (cdm-dataportal): ref #9252 adapting specimen tree view to more data coming wit...
Andreas Kohlbecker
03:38 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
now only the term related tasks are left to do Andreas Kohlbecker
03:36 PM task #9252 (In Progress): Harmonize SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker
03:35 PM Revision a9527b12 (cdmlib): ref #9252 determinig hasTypes from actual data and fixing type probel...
Andreas Kohlbecker
03:26 PM Revision 90957da7 (cdmlib-apps): latest changes to GreeceImageActivator
Andreas Müller
12:51 PM bug #9257 (Feedback): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fi...
Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type `SpecimenOrObservationType.P... Andreas Kohlbecker
12:14 PM bug #9257 (Closed): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fiel...
see FIXME comment in method Andreas Kohlbecker
12:46 PM Revision aa52b6f0 (cdmlib): ref #9257 comments including questions on missing filtering in the Dr...
Andreas Kohlbecker
12:27 PM Revision 06b2c5f6 (cdmlib): ref #9252 ref #9257 exposing SpecimenOrObservationType filter to fact...
Andreas Kohlbecker
12:17 PM bug #9256 (Resolved): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
Katja Luther
11:58 AM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
mail WB:
ein unangenehmer (und, glaube ich, neuer) Bug in HomotypicGroup.csv:
In der Spalte „TypeSpecimenString...
Katja Luther
12:12 PM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
Andreas Kohlbecker
11:40 AM bug #9254 (Resolved): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
Applied in changeset commit:cdmlib|5a1fd3284147ad65dc6408afa94956df19fd07e1. Andreas Kohlbecker
11:39 AM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
The request on portal/occurrence/{uuid}/fieldUnitDTO.json with the uuid of a FieldUnit fails with a ClassCast exception Andreas Kohlbecker
12:10 PM Revision 80fc1bdb (cdmlib): ref #9256: fix bug in nametypedesignation string
Katja Luther
11:43 AM task #9255 (New): DerivateDataDTO implement support for TissueSample
see TODO comment in `public static DerivateDataDTO fromEntity()` at line 62. Andreas Kohlbecker
11:40 AM Revision 5a1fd328 (cdmlib): fix #9254 removing restriction to DerivedUnit in conmroller method
Andreas Kohlbecker
11:25 AM Revision ddef3633 (cdmlib): ref #9253 todo comment
Andreas Kohlbecker
11:09 AM task #9253 (Closed): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
This intended function of `FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection... Andreas Kohlbecker
08:52 AM Revision 8dcc00a3 (cdmlib): ref #9252 adapting service method no new DTO name
Andreas Kohlbecker
08:34 AM Revision a72a8bbf (taxeditor): ref #9252 adapting texedior to renamed DTO classes
Andreas Kohlbecker

10/14/2020

02:46 PM Revision ca486eb2 (cdm-dataportal): ref #9252 harmonizing SpecimenOrOberservationBase related DTO...
Andreas Kohlbecker
02:46 PM Revision 0979f889 (cdmlib): ref #9252 harmonizing SpecimenOrOberservationBase related DTOs - rena...
Andreas Kohlbecker
02:14 PM Revision 005402b8 (cdmlib): ref #9252 harmonizing SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker
02:04 PM Revision f99e8546 (cdmlib): ref #9252 harmonizing SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker
02:03 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
Problems with the current implementations:
* Naming:
* PreservedSpecimenDTO should be named DerivedUnitDTO
...
Andreas Kohlbecker
11:54 AM Revision 71a05785 (cdm-dataportal): ref #8419 refactoring to harmonize dto and entitiy code
Andreas Kohlbecker

10/13/2020

06:04 PM bug #7606 (Duplicate): compact display of CDM Point data
closing as duplicate of #3978 Andreas Kohlbecker
06:02 PM task #3978 (Closed): Specimenview path: Compact representation of exactLocation
Andreas Kohlbecker
06:02 PM task #3978 (Resolved): Specimenview path: Compact representation of exactLocation
Andreas Kohlbecker
06:00 PM task #9251 (New): Specimenview path: better representation of RecordBasis
Copied from #3978
Hallo Andreas,
Bei der Specimenanzeige gäbe es glaube ich noch einige einfache Verbesserung...
Andreas Kohlbecker
05:57 PM Revision 441f6cf1 (cdm-dataportal): ref #9249 ref #3978 using compact collection and point repres...
Andreas Kohlbecker
05:56 PM Revision 8cbcd5c2 (cdmlib): ref #9249 ref #3978 harmonization of FieldUnit and Derivate DTOs:
- using pointDTO in all webservices
- cleaning up FieldUnitDTO and DerivateDTO
- using CollectionDTO on DerivateDTO
Andreas Kohlbecker
02:17 PM Revision df6ac42d (cdmlib): ref #8774: smaller changes in termDtos
Katja Luther
12:32 PM Revision ea5bc5a6 (cdmlib): TypedEntityReference reducing factory methods to one
Andreas Kohlbecker
12:25 PM Revision 40f78baa (cdmlib): ref #3978 PointBeanProcessor: sexagesimalstring without geospacial re...
Andreas Kohlbecker
12:05 PM Revision 667fce45 (cdm-dataportal): removing empty theme file
Andreas Kohlbecker
12:03 PM Revision 7a9e4b14 (cdm-dataportal): moving fuinction to occurrences.inc
Andreas Kohlbecker

10/12/2020

06:02 PM task #7917: Revise ReferenceSystemTerms
I checked the usage of ReferenceSystemTerms in the production dbs:
~~~
cdm_production_algaterra
-- WGS84
-...
Andreas Kohlbecker
04:48 PM task #7917: Revise ReferenceSystemTerms
Andreas Kohlbecker wrote:
> I discovered that adding 'gazetteer' was an explicit requirement which was handled in #2...
Andreas Kohlbecker
03:43 PM Revision 25d3f406 (cdm-dataportal): ref #9249 better testing of compact collection rendering
Andreas Kohlbecker
03:35 PM Revision cabd5376 (cdm-dataportal): ref #9249 adapting tests to compact collection rendering
Andreas Kohlbecker
03:26 PM feature request #9249 (Closed): compact display of collection information
Andreas Kohlbecker
02:22 PM feature request #9249 (Closed): compact display of collection information
Andreas Kohlbecker
03:25 PM Revision dba9669c (cdm-dataportal): ref #9249, ref #9250 moving connection and specimen render fu...
Andreas Kohlbecker
03:24 PM Revision e430307f (cdm-dataportal): moving foonote key compare function to footnotes.inc
Andreas Kohlbecker
03:21 PM Revision ae93540f (cdm-dataportal): ref #9249, ref #9250 compact collection representation with i...
Andreas Kohlbecker
03:18 PM Revision 07e3f63c (cdmlib): fix test - last commit
Katja Luther
03:02 PM Revision 2f7b5d9b (cdmlib): fix test - last commit
Katja Luther
02:48 PM feature request #9250 (New): collection page implemented
also enable link rendering in `function render_collection($collection, $do_link = false )` by changing the default if... Andreas Kohlbecker
02:46 PM Revision 8b01b5ad (cdm-dataportal): ref #9249 compact collection representation
Andreas Kohlbecker
02:40 PM Revision b90b38e7 (cdmlib): revert change in TermNode
Katja Luther
02:37 PM Revision cb30da3c (cdmlib): fix test -continue
Katja Luther
02:21 PM Revision 74f5eff7 (cdmlib): fix test -continue
Katja Luther
02:05 PM Revision 94e640ef (cdmlib): fix test -continue
Katja Luther
01:46 PM Revision baef7a46 (cdmlib): fix test -continue
Katja Luther
01:30 PM Revision 98e7bb0d (cdmlib): fix test
Katja Luther
01:16 PM Revision 10f9c53c (cdmlib): fix test
Katja Luther
01:02 PM bug #9248 (New): ABCD import configuration is not fail save for creation of new classification
When licking on "do not create new classification for new taxa" but missing to define the classification for adding t... Katja Luther
11:15 AM Revision 3037370e (cdmlib): ref #8774: dto and service adaptions to use dtos for term tree editors
Katja Luther
10:54 AM Revision 2e1c204d (taxeditor): ref #8774: adapt term tree editors to usage of termDtos
Katja Luther
09:35 AM bug #9247 (Duplicate): Link with taxon does not work correctly
mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat ...
Katja Luther
09:24 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
mail WB:
Hallo,
wir sind ja dabei, mehrere Datenpaper vorzubereiten. Die Formate sind noch nicht ganz klar (hängt...
Katja Luther

10/09/2020

04:58 PM Revision ecc0d83e (cdm-dataportal): adapting specimen test to extended testdata
Andreas Kohlbecker
03:35 PM bug #9245 (Feedback): Creating derived units from existing derived unit is not possible in specim...
Trying to add a derived unit to an already existing derived unit is not possible because the menu entry "Add/Hinzufüg... Katja Luther
01:56 PM bug #7686 (Closed): Specimen title cache issues in data portal specimen table
to me it seems as if all issues are fixed now, except for the issue of the missing comma between two specimen type de... Andreas Kohlbecker
01:24 PM feature request #3307: optionally reduce complexity in specimen display
I think that we rather should work on a better and more concise layout than solving this with a settings option. Andreas Kohlbecker
01:19 PM feature request #2985 (Closed): Improve Specimen details display
remaining issues and suggestions from comment 23 copied to other issues.
So we can close this issue now.
Andreas Kohlbecker
12:47 PM feature request #9244 (New): Improve NamedArea page
copied from #2985#note-23
Show abbrev label, description, named area type, URI, valid period, and maybe also suppl...
Andreas Kohlbecker
11:27 AM feature request #8854 (Closed): Choose new base font size for the portal
all suggestions for further improvement have been copied to new tickets (#9242, #9243) and this issue here can thus b... Andreas Kohlbecker
11:24 AM task #9243 (New): zen_dataportal theme: Discuss reduced fontsize of headings
follow up to #8854
Walter wrote:
> Ansonsten fällt mir hier nur auf, dass die Überschriften (fact categories) e...
Andreas Kohlbecker
11:19 AM feature request #9242 (New): cdm_taxontree: strategy for better readability
follow up to #8854
walter wrote:
> caryophyllales_spp: Sieht gut aus, bis auf den Navigator – da wird’s dann zi...
Andreas Kohlbecker
09:47 AM Revision ec3ca64c (cdmlib): ref #9238 removing quick fix allied in 4d6b5667 and adapting config f...
Andreas Kohlbecker

10/08/2020

06:50 PM Revision a584de6a (cdm-dataportal): ref #7599 adapting derivate tree view to DTOs and solving cod...
Andreas Kohlbecker
06:48 PM bug #9238 (Resolved): pure entities in DerivateDTO.derivates may cause LIEs
this should be fully solved now. Ticket can be closed as long as no further problems are popping up during the testing. Andreas Kohlbecker
06:40 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
The introduction of the SpecimenTypeDesignationDTO causes a couple problems since this dto is quite incomplete so far. Andreas Kohlbecker
06:38 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
this issue is problematic also in the context of other controller methods where DerivateDTO is being involved.
Ada...
Andreas Kohlbecker
06:42 PM Revision 1d9ed98e (cdmlib): ref #9238 extending SpecimenTypeDesignationDTO with more fields and a...
Andreas Kohlbecker

10/07/2020

02:57 PM Revision e2334714 (cdmlib): ref #9238 replacing entitiy by SpecimenTypeDesignationDTO in DerivateDTO
Andreas Kohlbecker
01:50 PM Revision 99e578a9 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
01:48 PM Revision 7dc47dea (cdm-dataportal): using new wms query form for legend queries
Andreas Kohlbecker
01:47 PM Revision 6a5d8049 (cdm-dataportal): function doc
Andreas Kohlbecker
11:32 AM Revision 1ade0e00 (cdmlib): updated cdmTest.h2.db (not sure anymore why this was necessary)
Andreas Müller
11:28 AM Revision 975cc221 (cdmlib-apps): ref #6581 adapt BerlinModelTaxonNameExport to new nomenclatural ...
Andreas Müller
11:27 AM Revision 6b217d8c (cdmlib-apps): ref #9204 some adaptation to latest dependencies to app-import
Andreas Müller

10/06/2020

05:25 PM bug #9240: nomenclatural status missing in name and registration page
Yes, it can be closed. The examples in PhycoBank are displayed perfectly. Wolf-Henning Kusber
05:01 PM bug #9240 (Resolved): nomenclatural status missing in name and registration page
default settings updated.
I think this ticket can be closed.
@Henning: Could you please review?
Andreas Kohlbecker
01:26 PM bug #9240 (In Progress): nomenclatural status missing in name and registration page
The
name render part for the nom status was missing in the default render template.
I added this to the phycob...
Andreas Kohlbecker
11:41 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
Navicula adminensis has status *nom. illeg* or *nom. superlf.*
https://www.phycobank.org/cdm_dataportal/name/26bd1...
Andreas Kohlbecker
04:57 PM Revision 77a553e1 (cdm-dataportal): drush commands to monitor name render configurations - adding...
Andreas Kohlbecker
04:06 PM Revision 3d1eea61 (cdm-dataportal): drush commands to monitor name render configurations
Andreas Kohlbecker
03:34 PM Revision e4821eeb (cdm-dataportal): ref #9240 homonym render template again separately
Andreas Kohlbecker
03:32 PM Revision 35abbad4 (cdm-dataportal): ref #9240 inntroducing class NameRenderConfiguration for all ...
Andreas Kohlbecker
02:42 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
Example: http://phycobank.org/102598 Wolf-Henning Kusber
11:27 AM feature request #9209 (Closed): name page, registration page: show annotations for names and fiel...
please enter "Etymology: " as prefix to the annotation text.
Andreas Kohlbecker
01:42 PM Revision a48a45cd (cdm-dataportal): ref #9240 merging identical render templates
Andreas Kohlbecker
01:41 PM bug #9241 (New): replace/adapt descriptionPart in render templated
after #6589 is fully solved the display of prologues in the data portal need to be adapted.
The render template de...
Andreas Kohlbecker
01:32 PM Revision 29e4bc66 (cdm-dataportal): ref #9240 adding statusPart to 'DEFAULT' and 'acceptedFor,typ...
Andreas Kohlbecker
08:58 AM Revision 3c6809f7 (cdm-dataportal): applying latest version of openlayer_map.js from develop bran...
Andreas Kohlbecker

10/05/2020

10:42 PM Revision 92178800 (cdm-dataportal): ref #9224 adapting openlayers map from jsonp to json ajax
Andreas Kohlbecker
03:38 PM Revision d3b4bec1 (cdm-dataportal): ref #7685 adapting test
Andreas Kohlbecker
03:26 PM Revision 3305483b (cdm-dataportal): ref #7685 predictive order of derivates
Andreas Kohlbecker
02:26 PM Revision 3e75dc06 (cdm-dataportal): ref #9224 error messages control with defined dom element id
Andreas Kohlbecker
02:11 PM Revision b2776a52 (cdm-dataportal): ref #9224 better error message in log
Andreas Kohlbecker
01:44 PM Revision 6a1fef21 (cdm-dataportal): no point testing for tabs
Andreas Kohlbecker
01:42 PM feature request #9239 (New): When opening bulk editor via referencing objects view the selected r...
... so that the details view (and other views) are filled automatically Andreas Müller

10/02/2020

09:39 PM Revision b34b4c6c (cdm-dataportal): ref #7685 adapting other tests to extendet test data
Andreas Kohlbecker
09:34 PM task #9231: Create statistics for Euro+Med
Zeitabhängigkeit:
~~~ sql
SELECT minYear, COUNT(*) AS n
FROM(
SELECT accId, accName.titleCache, MIN(Y) minY...
Andreas Müller
09:16 PM feature request #7685 (Closed): Add Selenium tests for specimen table in data portal
The test is fairly complete now.
Only tests for the indicator icons for DNA-sample and descriptive data are missin...
Andreas Kohlbecker
09:10 PM Revision 12178f01 (cdm-dataportal): ref #7685 testing for detail image in compressed specimen table
Andreas Kohlbecker
08:18 PM Revision 8c3d9651 (cdm-dataportal): ref #7685 test for compressed specimen table implemented, tes...
Andreas Kohlbecker
08:15 PM task #9187 (Duplicate): selenium test for specimen table view
duplicate of #7685 Andreas Kohlbecker
03:27 PM Revision 4d6b5667 (cdmlib): ref #9238 quick fix at least for the test data in reference_int Gleno...
Andreas Kohlbecker
03:26 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
this request http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/occurrence/89d36e79-3e80-4468-986e-411ca... Andreas Kohlbecker
12:15 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by co...
Andreas Kohlbecker
12:14 PM Revision 292b1ebe (cdm-dataportal): ref #7599, ref #7599 specimen tree view: fixing bug and adapt...
Andreas Kohlbecker
11:55 AM Revision 7a2bc944 (cdm-dataportal): moving functions to other file
Andreas Kohlbecker
11:54 AM Revision 430fcb76 (cdm-dataportal): refactoring, cleaning up, and bug fixing related to specimen ...
Andreas Kohlbecker
11:17 AM feature request #7599: treeView for specimen data in dataportal
[Andreas Müller wrote:]
Hallo,
wenn ich es richtig verstehe bezieht sich das auf die Derivate, die unterhalb vo...
Andreas Kohlbecker
11:17 AM feature request #7599: treeView for specimen data in dataportal
Naja, nicht ganz. Es geht auch im Tree View darum, dass in einem Derivat Baum, der aus einer Mischprobe entsteht, nic... Andreas Kohlbecker
11:15 AM feature request #7599: treeView for specimen data in dataportal
Ah ok,
das Ausblenden/Verstecken bezog sich nur auf die Compressed Table, richtig?
VG
A.
Andreas Kohlbecker
11:15 AM feature request #7599: treeView for specimen data in dataportal
[Katja wrote:]
Hallo Andreas,
die Origin derivate sollten schon angezeigt werden, auch wenn sie keine Assozia...
Andreas Kohlbecker
11:14 AM feature request #7599: treeView for specimen data in dataportal
Hallo Katja,
ich habe noch eine weitere Frage.
Soweit ich das verstanden habe gilt auch folgender Anforderung: ...
Andreas Kohlbecker
09:20 AM bug #9237 (Closed): FeatureTree SortIndex updater creates wrong sortindex
mail NK:
ich beobachte jetzt schon seit einer Weile, dass sich die Reihenfolge der Features, die ich im TaxEditor ...
Katja Luther

10/01/2020

06:18 PM feature request #9209 (Feedback): name page, registration page: show annotations for names and fi...
The annotations looks good, and the indicees are placed correctly. Some cache issues in references are remaining, but... Wolf-Henning Kusber
05:49 PM feature request #9209 (Resolved): name page, registration page: show annotations for names and fi...
Hi Henning,
please review on the test server:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datap...
Andreas Kohlbecker
06:17 PM bug #8340 (Rejected): is accepted for Footnotes missing and with wrong index
no need for any action on this issue since we decided to remove "is accepted" completely, see #8339 Andreas Kohlbecker
06:05 PM Revision 0fec6c2b (cdm-dataportal): ref #9220 adapting link creation to new registration page URL...
Andreas Kohlbecker
05:46 PM bug #9236: stopping an instance breaks the centralized logging
Further test showed that some service endpoints in fact are broken in the situation described above. Andreas Kohlbecker
05:38 PM bug #9236 (New): stopping an instance breaks the centralized logging
since switching to centralized logging through logback MDC (#7085) the logging gets broken when an cdm-webapp instanc... Andreas Kohlbecker
05:29 PM bug #6287 (Duplicate): Rolling cdmserver.log file only contains entries from startup phase
this has been solved by #7085
Closing as duplicate
Andreas Kohlbecker
04:58 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
completed. Andreas Kohlbecker
04:36 PM Revision b6e9b53a (cdm-dataportal): ref #9220 adapting link creation to new registration page URL...
Andreas Kohlbecker
04:11 PM Revision 6d5ee807 (cdm-dataportal): ref #9235 fixing copy paste bug
Andreas Kohlbecker
02:31 PM Revision f513f3ca (cdm-dataportal): ref #9235 annotations and sources as class for better merging...
Andreas Kohlbecker
01:40 PM Revision 65f9e1dc (taxeditor): restructure language preferences - continue
Katja Luther
01:35 PM Revision 4b186567 (taxeditor): restructure language preferences
Katja Luther

09/30/2020

06:13 PM Revision c1eeed43 (cdm-dataportal): fixingbug in test page error handling
Andreas Kohlbecker
05:57 PM Revision 95ef7468 (cdm-dataportal): ref #9235 annotations and sources as class for better merging...
Andreas Kohlbecker

09/29/2020

11:26 PM task #9231: Create statistics for Euro+Med
"Family" Query 4:
~~~ sql
-- E+M Families

SELECT famName, rankName, STATUS, n
FROM
(
...
Andreas Müller
09:58 PM task #9231 (In Progress): Create statistics for Euro+Med
Query for 3:
~~~ sql
-- E+M Area statistics
SELECT areaSymbol, areaName, rankName, STATUS, n
FROM
(
SELEC...
Andreas Müller
06:04 PM Revision c3e93473 (cdm-dataportal): ref #9235 adapting test to meet real expectations
Andreas Kohlbecker
05:54 PM Revision 1b6afb58 (cdm-dataportal): ref #9209 adapting to test cases to new test data with more n...
Andreas Kohlbecker
05:50 PM Revision 890f6c24 (cdm-dataportal): ref #9209 separating footnote keys with comma - preliminary s...
Andreas Kohlbecker
05:49 PM Revision faf38e61 (cdm-dataportal): adding footnotes to name relations
Andreas Kohlbecker
04:51 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
This is in principle solved but there are now potential layout problems due to the problem described in #9235.
We...
Andreas Kohlbecker
03:29 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
Editorial note on the FieldUnit of the Holotype for *Paludistella asymmetrica* is already shown in the registration a... Andreas Kohlbecker
04:49 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
Currently footnote keys are created per cdm entity. When footnote keys are created for name and taxon they need to be... Andreas Kohlbecker
04:38 PM bug #6821 (Worksforme): footnote keys without trailing dot character
Andreas Kohlbecker
03:21 PM Revision 7d926e4b (cdm-dataportal): testcase expecting either map text or map error text
Andreas Kohlbecker
02:58 PM Revision cd09cee6 (cdm-dataportal): ref #9209 removing last references to decomissioned function ...
- render_taxon_or_name() : replacing by
- compose_list_of_taxa() : refactoring duplicate code & using
to suppres...
Andreas Kohlbecker
12:22 PM bug #8567 (Worksforme): registration search results: cdm_compose_url(): missing pathParameter 0 f...
this has been fixed already in an other context Andreas Kohlbecker
12:19 PM feature request #8983: authors and team in combobox better distinguishable
evaluation need to be done rather soon so that we know how to deal with his issue for the **Phycobank ready for submi... Andreas Kohlbecker
12:00 PM bug #8579 (Worksforme): Search in PhycoBank Portal with error
this has been fixed in the context of something else. Andreas Kohlbecker
08:31 AM Revision aab5bbc7 (taxeditor): revert last commit
Katja Luther

09/28/2020

05:58 PM Revision fde231f8 (cdm-dataportal): ref #9209 removing obsoltete calls to decomissioned function ...
Andreas Kohlbecker
05:57 PM Revision af9ab4d7 (cdm-dataportal): typo and comment formatting
Andreas Kohlbecker
05:25 PM Revision 9b3f8ce8 (cdm-dataportal): ref #9209 intoducing default configuration for annotation_and...
Andreas Kohlbecker
04:55 PM Revision a764d3d1 (cdm-dataportal): ref #9234 ignoring test temporariliy
Andreas Kohlbecker
04:54 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by co...
casued by this code
~~~php
function compose_cdm_specimen_or_observation_tree_entry() {
...
...
Andreas Kohlbecker
03:43 PM Revision 69303661 (cdm-dataportal): using annotationsAndSourceConfig managed through RenderHints ...
Andreas Kohlbecker
03:42 PM Revision ebf17187 (cdm-dataportal): code cleaning of static access
Andreas Kohlbecker
03:42 PM Revision 5782f8dd (cdm-dataportal): adaping test element to modified render path
Andreas Kohlbecker
02:44 PM bug #8547 (Resolved): Default type of a newly created inReference should depend on the type of th...
The default type of the newly created inReference depends of the reference now. Please review.
Updated the title.
Katja Luther
02:40 PM Revision 2d07da9a (taxeditor): ref #8547: default type of inreference depending on ref type
Katja Luther
01:46 PM Revision 057ac9cf (cdm-dataportal): removing debug code
Andreas Kohlbecker
01:14 PM Revision d52836e7 (cdm-dataportal): improving documentation
Andreas Kohlbecker
12:54 PM Revision e97c6535 (cdm-dataportal): RenderHints can store global annotationsAndSourceConfig
Andreas Kohlbecker
12:53 PM bug #8874: move taxon is reverted when taxon is edited afterwards
this should be fixed. please review. Katja Luther
12:53 PM Revision 136d38e9 (taxeditor): ref #8874: add taxonnode to getUpdatedTaxon
Katja Luther
12:15 PM Revision a4eeef88 (cdm-dataportal): moving functions for handling annotations and sources to foot...
Andreas Kohlbecker
12:01 PM Revision dc342fe0 (cdm-dataportal): ref #9209 fixing footnote order in registration page and adap...
Andreas Kohlbecker
11:45 AM bug #8846 (Worksforme): Correctly parsed nomenclatural reference uncorrectly saved when taxon has...
This seems to be fixed, could not reproduce this problem anymore. Katja Luther
 

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