Activity
From 09/28/2020 to 10/27/2020
10/27/2020
- 01:44 PM Revision 575c50be (taxeditor): catch widget is disposed
- 01:09 PM Revision c64a02e7 (cdmlib): ref #69554: fix test
- 11:58 AM Revision 9f7f7692 (cdmlib): ref #69554: adapt cdmLight export
- 11:14 AM bug #9263 (In Progress): Unify case for type designation status
- NKo: ich würde sagen, wenn es als Satzanfang ausgegeben wird, dann groß, sonst klein. Auf gar keinen Fall abkürzen.
...
10/26/2020
- 11:23 AM bug #9264 (Closed): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat (H...
10/24/2020
- 09:28 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
- this ticket duplicates #9262
10/23/2020
- 11:00 PM Revision f36cf20b (cdmlib): ref #9262 further cleanup citation handling in TypeDesignationSetManager (cont.)
- 10:55 PM Revision f323d2c8 (cdmlib): cleanup
- 10:55 PM Revision f9f1f4a3 (cdmlib): ref #9262 further cleanup citation handling in TypeDesignationSetManager
- 10:54 PM Revision f6cadc73 (cdmlib): cleanup TypeDesignationSetManager
- 10:49 PM Revision ef013705 (cdmlib): ref #9262 fix failing test by adding lectotype to name type status in test terms
- 08:48 PM Revision 085f44ab (cdmlib): ref #9262 unify buildString methods in TypeDesignationSetManager and unify some minor formatting issues
- 07:48 PM Revision b7900258 (cdmlib): remove deprecated method from TypeDesignationSetManager
- 06:00 PM bug #9263 (Closed): Unify case for type designation status
- Current csv files use lower case for NameTypeDesignationStatus and upper case for SpecimenTypeDesignationStatus. This...
- 05:43 PM Revision bdb70df7 (cdmlib): ref #9262 javadoc link to ticket
- 05:42 PM Revision ff136ac1 (cdmlib): correct rank for name type tests in TypeDesignationSetManagerTest
- 05:38 PM Revision 742c4c12 (cdmlib): ref #9262 add test for lecto-nametype with designated by and fide
- 04:49 PM Revision 0a854685 (cdm-dataportal): Merge branch 'occurrences-in-tables' into develop
- 04:49 PM Revision e809ac5d (cdm-dataportal): ref #7599, ref #8419 specimen tree view with nested tables
- 03:25 PM Revision 38cdb834 (cdmlib): ref #9262 move lectotype citation for name types in stringify(NameTypeDesignation) method
- 03:19 PM Revision e346d276 (cdmlib): cleanup
- 11:55 AM Revision 0ad005e1 (cdmlib): ref #9262 move designated by out of brackets
- 11:53 AM Revision 9bcc56f3 (cdmlib): cleanup
- 08:30 AM Revision 79180ba0 (cdm-vaadin): ref #7936 removing handler for redmine messaging exceptions
10/22/2020
- 07:14 PM Revision 9eab4a32 (cdmlib): ref #9262 fix et. al position in cdmlight
- 06:51 PM Revision f2ab76ab (cdmlib): fix linux compilation issue
- 06:46 PM Revision 5237bd86 (cdmlib): improve javadoc link
- 06:42 PM Revision 30190957 (cdmlib): ref #9262 fix fide and designated by handling for cdmlight export and TypeDesignationSetManager
- 06:28 PM Revision bef3ccce (cdmlib): cleanup
- 06:08 PM Revision 413ff959 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0 - final bug fix
- 04:57 PM Revision d0a7386d (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0 - bug fix
- 04:31 PM Revision eea35c81 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0 - bug fix
- 04:23 PM Revision 6b834cf6 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0 - bug fix
- 04:11 PM Revision 9c9b6874 (cdmlib): ref #9252 adding MediaSpecimen.media to DerivedUnitDTO.listOfMedia
- 04:07 PM Revision a009dfe6 (cdmlib): fixing compilation problem stemming from outdated javadoc @link references
- 04:07 PM Revision 9db34f82 (cdmlib): updating maven-antrun-plugin configuration to conform to version 3.0.0
- 02:31 PM Revision 99bcfa16 (cdmlib): cleanup
- 01:40 PM Revision 772c2fdb (cdmlib): improve generics for TypeDesignationSetManager TypedEntityReference
- 01:40 PM Revision a06014f5 (cdmlib): cleanup
- 01:28 PM Revision 5370c90a (cdm-dataportal): ref #8419 table headers with internal links
- 01:28 PM Revision 3cea6e15 (cdm-dataportal): ref #8419 using tables to show occurrence details
- 01:26 PM Revision d7d8ad90 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
- 12:45 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- Mail WGB 2020-10-22:
1. ~~Fehlerhafter Literatur-Output – zwei Autoren + et al. statt Erstautor + et al., siehe an... - 12:15 PM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
- 12:15 PM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
- 12:15 PM bug #9261 (Resolved): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
- Applied in changeset commit:cdmlib|8728f23bae0e8758c46f09837af01070922d1d41.
- 11:35 AM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
- http://api.cybertaxonomy.org/caryophyllales/portal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749/taxonNodes.json fails w...
- 12:14 PM Revision 8728f23b (cdmlib): fix #9261 extending init strategy to avoid LIEs in TaxonController
10/21/2020
- 02:17 PM Revision 6e0129cb (cdm-dataportal): ref #9260 avoiding fatal error in case of web service failure
- 02:13 PM Revision 098e4095 (cdm-dataportal): ref #9259 adapting portal
- 01:09 PM Revision 63503e49 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
- 12:42 PM Revision 8a788533 (cdm-dataportal): fixing bug in layer bounds calculation - 2
- 12:06 PM Revision b14f308a (cdm-dataportal): fixing bug in layer bounds calculation
- 10:02 AM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
- http://caryophyllales.org/cdm_dataportal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749
~~~
Recoverable fatal error: ...
10/20/2020
- 09:27 PM Revision 05b014a3 (taxeditor): revert "preliminary throw exception for invalid URIs"
- 07:49 PM Revision 27769d89 (taxeditor): fix NPE and ConcurrentModifiationException in removeLabelException()
- 07:18 PM Revision b4543dac (taxeditor): preliminary throw exception for invalid URIs
- 07:18 PM Revision 6ac89129 (taxeditor): cleanup
- 06:24 PM Revision 9de7a9ea (cdmlib): remove redmine-java-api version from parent pom
- 06:20 PM Revision 7e05cce6 (cdmlib): remove 2 deprecated methods from ImagesUtility
- 06:20 PM Revision dc9e54ed (cdmlib): cleanup
- 05:14 PM Revision 58618089 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
- 05:02 PM Revision cfef9b81 (cdm-dataportal): adapting map extent calculation to modified behavior of area.php
- 02:56 PM Revision b1f25a11 (cdm-dataportal): ref #8419 speciemen tree view: defined order of child derivatives - adapting test case
- 02:35 PM Revision 17853a0b (cdm-dataportal): Merge branch 'support/5.17.2' into develop
- 02:35 PM Revision 4bf94c23 (cdm-dataportal): sending bbox to rest_gen.php only transformed for EPSG4326 - bugfix
- 02:15 PM Revision dc0f7c29 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
- 01:53 PM Revision dab257a8 (cdm-dataportal): ref #8419 speciemen tree view: defined order of child derivatives
- 01:41 PM Revision 0a1cb264 (cdm-dataportal): test method comments
- 01:13 PM task #8081: Complete removal of redmine communication hub instances
- all code has been removed now! see #7936
- 01:12 PM task #7315 (Rejected): remove workaround RedmineTransportAccessor
- no longer needed, since the redmine message hub has been completely rejected
- 01:10 PM bug #7936 (Closed): Consider complete removal of redmine communication hub code
- 01:08 PM Revision 2ee5f0e4 (cdmlib): ref #7936 removing redmine-api dependency and unused ExternalServiceException
- 01:08 PM Revision 03f21108 (cdmlib): ref #7936 full removal of redmine communication hub code
- 01:07 PM Revision d0db04ae (taxeditor): ref #7936 removing redmine-api dependency from taxeditor
- 11:50 AM Revision 1f22b30d (cdm-dataportal): sending bbox to rest_gen.php only transformed for EPSG4326
- 11:37 AM Revision af612856 (cdmlib): archive old schema updaters (combine packages)
- 11:30 AM Revision 3c3d7701 (cdm-dataportal): ref #9259 adapting dataportal to modified term serialization
- 10:20 AM Revision 55344030 (taxeditor): fix NPE in TypeDesignationSection
- 10:20 AM Revision ced08e17 (taxeditor): cleanup
- 07:54 AM Revision da072b17 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
- 07:45 AM Revision 41910d88 (cdm-dataportal): fixing exuecution order problem in test class and reverting footnote key changes
- 07:35 AM Revision 8031902e (cdm-dataportal): ref #8419 supressing most significantIndentifier in specimen tree view
10/19/2020
- 11:29 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
- This ticket needs to be fixed urgently as it makes the specimen tree editor impossible to use
- 10:44 PM Revision 604416f3 (taxeditor): ref #9252 adapting Taxeditor to modified DTOs - 3
- 09:58 PM Revision 7b687a41 (cdm-dataportal): adapting to latest dto changes and to updated render template settings in DB
- 09:56 PM Revision 33d3036f (cdmlib): ref #9252 adding mostSignificantIdentifier to DerivedUnitDTO
- 09:41 PM Revision d9b0c185 (cdmlib): ref #9252 using TypedEntityReference for DerivedUnitDTO.associatedTaxa
- 07:50 PM Revision 7502200f (taxeditor): ref #9252 adapting Taxeditor to modified DTOs - 2
- 05:04 PM bug #6757: AbcdImportWizard has all configurator flags set to false
- Is this still an open issue? If yes we should fix it soon (probably a no-brainer), if not, we should close this ticke...
- 04:54 PM Revision 107fdc7d (taxeditor): ref #9204 update junit to 4.13.1 in TaxEditor (cont.)
- 04:28 PM Revision f0d35b30 (cdmlib): try to remove direct dependencies (junit and log4j) from cdmlib-parent (cont.)
- 04:20 PM Revision 82e4e13a (cdmlib): ref #9204 update junit to 4.13.1 in cdmlib
- 04:19 PM Revision 1879274b (taxeditor): ref #9204 update junit to 4.13.1 in TaxEditor
- 04:09 PM Revision 0eb187f5 (taxeditor): ref #9252 adapting Taxeditor to moodified DTOs
- 04:08 PM Revision e1779d28 (cdmlib): ref #9252 adding id as propery to recover lost UuidAndTitleCache property for the taxeditor
- 04:06 PM Revision ff730337 (cdmlib): try to remove direct dependencies (junit and log4j) from cdmlib-parent
- 02:09 PM Revision afcf5f85 (cdmlib): ref #9252 maving fieldUnitDTO creation into transactional context - fixing careless mistake
- 02:05 PM task #9252 (Resolved): Harmonize SpecimenOrOberservationBase related DTOs
- should be solved now, needs review
- 02:05 PM Revision de30431b (cdmlib): ref #9252 maving fieldUnitDTO creation into transactional context
- 01:55 PM Revision a870ef69 (cdmlib): try to fix failing (in suite) test (cont.)
- 01:49 PM Revision 41c4bff5 (cdmlib): try to fix failing (in suite) test (cont.)
- 01:49 PM Revision e9fcfee8 (cdmlib): cleanup
- 01:33 PM Revision e5f49216 (cdmlib): try to fix failing (in suite) test
- 01:33 PM Revision 28339232 (cdmlib): remove some further null values from test data
- 01:32 PM Revision 9e6f7278 (cdmlib): cleanup
- 01:15 PM Revision c8c5fe7b (cdmlib): cleanup
- 01:13 PM Revision d5b2e2e8 (cdm-dataportal): ref #8419 fixing bug render hints usage and new render template default for names in speciemen views
- 01:13 PM Revision 293a199b (cdmlib): remove some null values from test data
- 12:36 PM Revision d945b5ca (cdm-dataportal): forcing untiled maps for all wms requests - setting ratio for single tiles from options
- 12:29 PM Revision a9acb2d4 (cdm-dataportal): forcing untiled maps for all wms requests
- 09:56 AM task #9259 (Closed): reduce fields in TermBase json serializations
- 09:55 AM task #9259 (Resolved): reduce fields in TermBase json serializations
- Applied in changeset commit:cdmlib|3ae4f12f20159b7e0ddb04c68f4bfc5fb17d5481.
- 09:43 AM task #9259 (In Progress): reduce fields in TermBase json serializations
- 09:43 AM task #9259 (Closed): reduce fields in TermBase json serializations
- The fields in json serializations produced by the TermBaseBeanProcessor can be reduced.
here an example of the cur... - 09:55 AM Revision 3ae4f12f (cdmlib): fix #9259 reducing fields in TermBase json serializations
- 09:40 AM Revision ce9ce745 (cdm-dataportal): ref #9252 adapting test
- 09:39 AM Revision 56a041f8 (cdm-dataportal): ref #8419 specimen tree view: display of specimen type designations optional (disabled)
- 09:38 AM Revision 71d2f44c (cdm-dataportal): fixing outdated curly braces array syntax
- 08:59 AM Revision 2de25dc7 (cdm-dataportal): fixing outdated curly braces array syntax
- 08:28 AM Revision d1088a53 (cdm-dataportal): ref #9252 adapting portal to latest DTO changes
- 08:27 AM Revision 7e0e6396 (cdmlib): ref #9252 using DefinedTermBase for term fields in DTOs and TypedEdityRefernce for indentifications
10/16/2020
- 06:02 PM Revision 2e893626 (cdm-dataportal): ref #9252 localizing kind of unit in SpecimenOrObservationBaseDTO - adapting portal
- 06:01 PM Revision c15eb727 (cdmlib): ref #9252 localizing kind of unit in SpecimenOrObservationBaseDTO
- 01:50 PM feature request #9258 (Closed): Use Partial for date in FieldUnitDTO
- 01:50 PM feature request #9258 (Resolved): Use Partial for date in FieldUnitDTO
- Applied in changeset commit:cdmlib|e0089f681023c823ee9424dfe2ac550065414474.
- 12:11 PM feature request #9258 (Closed): Use Partial for date in FieldUnitDTO
- FieldUnitDTO contains the date as pure string this has at least two problems:
* FieldUnitDTOs can not be reliably ... - 01:50 PM Revision e0089f68 (cdmlib): fix #9258 using Partial for date field in FieldUnitDTO
- 01:06 PM Revision afead756 (cdm-dataportal): adapting portal and test to new FieldDTO.specimenIdentifier field - 2
- 01:05 PM Revision 7eb0d308 (cdm-dataportal): adapting portal and test to new FieldDTO.specimenIdentifier field
- 12:06 PM Revision eacf1ee2 (cdm-dataportal): ref #9252, ref #8423 adapting specimen tree view to fixed derivate path mergring and other changes
- 12:04 PM Revision 69b6c2b3 (cdmlib): ref #8419 ref #9252 introducing specimenIdentifier field in DTO and experimental accessionNumber cleanup
- 12:03 PM task #9253 (In Progress): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- 08:59 AM bug #8423 (Resolved): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- 08:59 AM bug #8423 (Closed): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- 08:58 AM Revision e4979fe2 (cdmlib): ref #8423 OccurrenceServiceImpl.findFieldUnitDTO() : fixing merge problem of derivate paths
10/15/2020
- 09:34 PM Revision 5d299395 (cdmlib): ref #9253 cleaning up caller of OccurrenceServiceImpl.findFieldUnitDTO(..)
- 09:30 PM bug #8423 (In Progress): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- 09:26 PM Revision 864cab25 (cdmlib): ref #8423 raising log level of problematic situation and code cleaning
- 05:40 PM Revision b1a675d1 (cdmlib): ref #8423 ref #9253, ref #9252 fixing duplicate addition of DerivedUnitDTOs
- 05:28 PM Revision 970272ed (cdmlib): ref #9252 basing SpecimenOrObservationBaseDTO on TypedEntityReference
- 04:48 PM Revision 7d539adb (cdm-dataportal): ref #9252 supressing FieldUnitDTO fields in specimen tree view
- 04:13 PM Revision 5830e16a (cdm-dataportal): ref #9252 adapting specimen tree view to more data coming witgh FieldUnitDTO
- 03:38 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
- now only the term related tasks are left to do
- 03:36 PM task #9252 (In Progress): Harmonize SpecimenOrOberservationBase related DTOs
- 03:35 PM Revision a9527b12 (cdmlib): ref #9252 determinig hasTypes from actual data and fixing type probelms in methods
- 03:26 PM Revision 90957da7 (cdmlib-apps): latest changes to GreeceImageActivator
- 12:51 PM bug #9257 (Feedback): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type `SpecimenOrObservationType.P...
- 12:14 PM bug #9257 (Closed): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- see FIXME comment in method
- 12:46 PM Revision aa52b6f0 (cdmlib): ref #9257 comments including questions on missing filtering in the DrivedUnitDTO construction
- 12:27 PM Revision 06b2c5f6 (cdmlib): ref #9252 ref #9257 exposing SpecimenOrObservationType filter to factory method and better flag handling
- 12:17 PM bug #9256 (Resolved): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
- 11:58 AM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
- mail WB:
ein unangenehmer (und, glaube ich, neuer) Bug in HomotypicGroup.csv:
In der Spalte „TypeSpecimenString... - 12:12 PM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- 11:40 AM bug #9254 (Resolved): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- Applied in changeset commit:cdmlib|5a1fd3284147ad65dc6408afa94956df19fd07e1.
- 11:39 AM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- The request on portal/occurrence/{uuid}/fieldUnitDTO.json with the uuid of a FieldUnit fails with a ClassCast exception
- 12:10 PM Revision 80fc1bdb (cdmlib): ref #9256: fix bug in nametypedesignation string
- 11:43 AM task #9255 (New): DerivateDataDTO implement support for TissueSample
- see TODO comment in `public static DerivateDataDTO fromEntity()` at line 62.
- 11:40 AM Revision 5a1fd328 (cdmlib): fix #9254 removing restriction to DerivedUnit in conmroller method
- 11:25 AM Revision ddef3633 (cdmlib): ref #9253 todo comment
- 11:09 AM task #9253 (Closed): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- This intended function of `FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection...
- 08:52 AM Revision 8dcc00a3 (cdmlib): ref #9252 adapting service method no new DTO name
- 08:34 AM Revision a72a8bbf (taxeditor): ref #9252 adapting texedior to renamed DTO classes
10/14/2020
- 02:46 PM Revision ca486eb2 (cdm-dataportal): ref #9252 harmonizing SpecimenOrOberservationBase related DTOs - adapting portal to renamed classes
- 02:46 PM Revision 0979f889 (cdmlib): ref #9252 harmonizing SpecimenOrOberservationBase related DTOs - renaming classes
- 02:14 PM Revision 005402b8 (cdmlib): ref #9252 harmonizing SpecimenOrOberservationBase related DTOs
- 02:04 PM Revision f99e8546 (cdmlib): ref #9252 harmonizing SpecimenOrOberservationBase related DTOs
- 02:03 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
- Problems with the current implementations:
* Naming:
* PreservedSpecimenDTO should be named DerivedUnitDTO
... - 11:54 AM Revision 71a05785 (cdm-dataportal): ref #8419 refactoring to harmonize dto and entitiy code
10/13/2020
- 06:04 PM bug #7606 (Duplicate): compact display of CDM Point data
- closing as duplicate of #3978
- 06:02 PM task #3978 (Closed): Specimenview path: Compact representation of exactLocation
- 06:02 PM task #3978 (Resolved): Specimenview path: Compact representation of exactLocation
- 06:00 PM task #9251 (New): Specimenview path: better representation of RecordBasis
- Copied from #3978
Hallo Andreas,
Bei der Specimenanzeige gäbe es glaube ich noch einige einfache Verbesserung... - 05:57 PM Revision 441f6cf1 (cdm-dataportal): ref #9249 ref #3978 using compact collection and point representations in all specimen views, adapting tests
- 05:56 PM Revision 8cbcd5c2 (cdmlib): ref #9249 ref #3978 harmonization of FieldUnit and Derivate DTOs:
- - using pointDTO in all webservices
- cleaning up FieldUnitDTO and DerivateDTO
- using CollectionDTO on DerivateDTO - 02:17 PM Revision df6ac42d (cdmlib): ref #8774: smaller changes in termDtos
- 12:32 PM Revision ea5bc5a6 (cdmlib): TypedEntityReference reducing factory methods to one
- 12:25 PM Revision 40f78baa (cdmlib): ref #3978 PointBeanProcessor: sexagesimalstring without geospacial reference system
- 12:05 PM Revision 667fce45 (cdm-dataportal): removing empty theme file
- 12:03 PM Revision 7a9e4b14 (cdm-dataportal): moving fuinction to occurrences.inc
10/12/2020
- 06:02 PM discussion #7917: Revise ReferenceSystemTerms
- I checked the usage of ReferenceSystemTerms in the production dbs:
~~~
cdm_production_algaterra
-- WGS84
-... - 04:48 PM discussion #7917: Revise ReferenceSystemTerms
- Andreas Kohlbecker wrote:
> I discovered that adding 'gazetteer' was an explicit requirement which was handled in #2... - 03:43 PM Revision 25d3f406 (cdm-dataportal): ref #9249 better testing of compact collection rendering
- 03:35 PM Revision cabd5376 (cdm-dataportal): ref #9249 adapting tests to compact collection rendering
- 03:26 PM feature request #9249 (Closed): compact display of collection information
- 02:22 PM feature request #9249 (Closed): compact display of collection information
- 03:25 PM Revision dba9669c (cdm-dataportal): ref #9249, ref #9250 moving connection and specimen render function to occurrences.inc
- 03:24 PM Revision e430307f (cdm-dataportal): moving foonote key compare function to footnotes.inc
- 03:21 PM Revision ae93540f (cdm-dataportal): ref #9249, ref #9250 compact collection representation with icon link (disabled until collection page is ready)
- 03:18 PM Revision 07e3f63c (cdmlib): fix test - last commit
- 03:02 PM Revision 2f7b5d9b (cdmlib): fix test - last commit
- 02:48 PM feature request #9250 (New): collection page implemented
- also enable link rendering in `function render_collection($collection, $do_link = false )` by changing the default if...
- 02:46 PM Revision 8b01b5ad (cdm-dataportal): ref #9249 compact collection representation
- 02:40 PM Revision b90b38e7 (cdmlib): revert change in TermNode
- 02:37 PM Revision cb30da3c (cdmlib): fix test -continue
- 02:21 PM Revision 74f5eff7 (cdmlib): fix test -continue
- 02:05 PM Revision 94e640ef (cdmlib): fix test -continue
- 01:46 PM Revision baef7a46 (cdmlib): fix test -continue
- 01:30 PM Revision 98e7bb0d (cdmlib): fix test
- 01:16 PM Revision 10f9c53c (cdmlib): fix test
- 01:02 PM bug #9248 (New): ABCD import configuration is not fail save for creation of new classification
- When licking on "do not create new classification for new taxa" but missing to define the classification for adding t...
- 11:15 AM Revision 3037370e (cdmlib): ref #8774: dto and service adaptions to use dtos for term tree editors
- 10:54 AM Revision 2e1c204d (taxeditor): ref #8774: adapt term tree editors to usage of termDtos
- 09:35 AM bug #9247 (Duplicate): Link with taxon does not work correctly
- mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat ... - 09:24 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
- mail WB:
Hallo,
wir sind ja dabei, mehrere Datenpaper vorzubereiten. Die Formate sind noch nicht ganz klar (hängt...
10/09/2020
- 04:58 PM Revision ecc0d83e (cdm-dataportal): adapting specimen test to extended testdata
- 03:35 PM bug #9245 (Feedback): Creating derived units from existing derived unit is not possible in specimen tree editor
- Trying to add a derived unit to an already existing derived unit is not possible because the menu entry "Add/Hinzufüg...
- 01:56 PM bug #7686 (Closed): Specimen title cache issues in data portal specimen table
- to me it seems as if all issues are fixed now, except for the issue of the missing comma between two specimen type de...
- 01:24 PM feature request #3307: optionally reduce complexity in specimen display
- I think that we rather should work on a better and more concise layout than solving this with a settings option.
- 01:19 PM feature request #2985 (Closed): Improve Specimen details display
- remaining issues and suggestions from comment 23 copied to other issues.
So we can close this issue now. - 12:47 PM feature request #9244 (New): Improve NamedArea page
- copied from #2985#note-23
Show abbrev label, description, named area type, URI, valid period, and maybe also suppl... - 11:27 AM feature request #8854 (Closed): Choose new base font size for the portal
- all suggestions for further improvement have been copied to new tickets (#9242, #9243) and this issue here can thus b...
- 11:24 AM task #9243 (New): zen_dataportal theme: Discuss reduced fontsize of headings
- follow up to #8854
Walter wrote:
> Ansonsten fällt mir hier nur auf, dass die Überschriften (fact categories) e... - 11:19 AM feature request #9242 (New): cdm_taxontree: strategy for better readability
- follow up to #8854
walter wrote:
> caryophyllales_spp: Sieht gut aus, bis auf den Navigator – da wird’s dann zi... - 09:47 AM Revision ec3ca64c (cdmlib): ref #9238 removing quick fix allied in 4d6b5667 and adapting config for json serialization
10/08/2020
- 06:50 PM Revision a584de6a (cdm-dataportal): ref #7599 adapting derivate tree view to DTOs and solving code inconsistencies
- 06:48 PM bug #9238 (Resolved): pure entities in DerivateDTO.derivates may cause LIEs
- this should be fully solved now. Ticket can be closed as long as no further problems are popping up during the testing.
- 06:40 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
- The introduction of the SpecimenTypeDesignationDTO causes a couple problems since this dto is quite incomplete so far.
- 06:38 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
- this issue is problematic also in the context of other controller methods where DerivateDTO is being involved.
Ada... - 06:42 PM Revision 1d9ed98e (cdmlib): ref #9238 extending SpecimenTypeDesignationDTO with more fields and associated DTOs, introducing ReferenceDTO, supressing unwanted and dangerous fields of RegistrationDTO
10/07/2020
- 02:57 PM Revision e2334714 (cdmlib): ref #9238 replacing entitiy by SpecimenTypeDesignationDTO in DerivateDTO
- 01:50 PM Revision 99e578a9 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
- 01:48 PM Revision 7dc47dea (cdm-dataportal): using new wms query form for legend queries
- 01:47 PM Revision 6a5d8049 (cdm-dataportal): function doc
- 11:32 AM Revision 1ade0e00 (cdmlib): updated cdmTest.h2.db (not sure anymore why this was necessary)
- 11:28 AM Revision 975cc221 (cdmlib-apps): ref #6581 adapt BerlinModelTaxonNameExport to new nomenclatural source handling
- 11:27 AM Revision 6b217d8c (cdmlib-apps): ref #9204 some adaptation to latest dependencies to app-import
10/06/2020
- 05:25 PM bug #9240: nomenclatural status missing in name and registration page
- Yes, it can be closed. The examples in PhycoBank are displayed perfectly.
- 05:01 PM bug #9240 (Resolved): nomenclatural status missing in name and registration page
- default settings updated.
I think this ticket can be closed.
@Henning: Could you please review? - 01:26 PM bug #9240 (In Progress): nomenclatural status missing in name and registration page
- The
name render part for the nom status was missing in the default render template.
I added this to the phycob... - 11:41 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
- Navicula adminensis has status *nom. illeg* or *nom. superlf.*
https://www.phycobank.org/cdm_dataportal/name/26bd1... - 04:57 PM Revision 77a553e1 (cdm-dataportal): drush commands to monitor name render configurations - adding missing class to drush file
- 04:06 PM Revision 3d1eea61 (cdm-dataportal): drush commands to monitor name render configurations
- 03:34 PM Revision e4821eeb (cdm-dataportal): ref #9240 homonym render template again separately
- 03:32 PM Revision 35abbad4 (cdm-dataportal): ref #9240 inntroducing class NameRenderConfiguration for all const and function for these settings; in preparation for drush function and for simpler code
- 02:42 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- Example: http://phycobank.org/102598
- 11:27 AM feature request #9209 (Closed): name page, registration page: show annotations for names and fieldunits
- please enter "Etymology: " as prefix to the annotation text.
- 01:42 PM Revision a48a45cd (cdm-dataportal): ref #9240 merging identical render templates
- 01:41 PM bug #9241 (New): replace/adapt descriptionPart in render templated
- after #6589 is fully solved the display of prologues in the data portal need to be adapted.
The render template de... - 01:32 PM Revision 29e4bc66 (cdm-dataportal): ref #9240 adding statusPart to 'DEFAULT' and 'acceptedFor,typedesignations,list_of_taxa'render templates
- 08:58 AM Revision 3c6809f7 (cdm-dataportal): applying latest version of openlayer_map.js from develop branch per checkout
10/05/2020
- 10:42 PM Revision 92178800 (cdm-dataportal): ref #9224 adapting openlayers map from jsonp to json ajax
- 03:38 PM Revision d3b4bec1 (cdm-dataportal): ref #7685 adapting test
- 03:26 PM Revision 3305483b (cdm-dataportal): ref #7685 predictive order of derivates
- 02:26 PM Revision 3e75dc06 (cdm-dataportal): ref #9224 error messages control with defined dom element id
- 02:11 PM Revision b2776a52 (cdm-dataportal): ref #9224 better error message in log
- 01:44 PM Revision 6a1fef21 (cdm-dataportal): no point testing for tabs
- 01:42 PM feature request #9239 (New): When opening bulk editor via referencing objects view the selected record should have the focus
- ... so that the details view (and other views) are filled automatically
10/02/2020
- 09:39 PM Revision b34b4c6c (cdm-dataportal): ref #7685 adapting other tests to extendet test data
- 09:34 PM task #9231: Create statistics for Euro+Med
- Zeitabhängigkeit:
~~~ sql
SELECT minYear, COUNT(*) AS n
FROM(
SELECT accId, accName.titleCache, MIN(Y) minY... - 09:16 PM feature request #7685 (Closed): Add Selenium tests for specimen table in data portal
- The test is fairly complete now.
Only tests for the indicator icons for DNA-sample and descriptive data are missin... - 09:10 PM Revision 12178f01 (cdm-dataportal): ref #7685 testing for detail image in compressed specimen table
- 08:18 PM Revision 8c3d9651 (cdm-dataportal): ref #7685 test for compressed specimen table implemented, test data not yet complete
- 08:15 PM task #9187 (Duplicate): selenium test for specimen table view
- duplicate of #7685
- 03:27 PM Revision 4d6b5667 (cdmlib): ref #9238 quick fix at least for the test data in reference_int Glenodinium apiculatum
- 03:26 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
- this request http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/occurrence/89d36e79-3e80-4468-986e-411ca...
- 12:15 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by compose_cdm_specimen_or_observation_tree_entry()
- 12:14 PM Revision 292b1ebe (cdm-dataportal): ref #7599, ref #7599 specimen tree view: fixing bug and adapting test
- 11:55 AM Revision 7a2bc944 (cdm-dataportal): moving functions to other file
- 11:54 AM Revision 430fcb76 (cdm-dataportal): refactoring, cleaning up, and bug fixing related to specimen and specimen dtp pages
- 11:17 AM feature request #7599: treeView for specimen data in dataportal
- [Andreas Müller wrote:]
Hallo,
wenn ich es richtig verstehe bezieht sich das auf die Derivate, die unterhalb vo... - 11:17 AM feature request #7599: treeView for specimen data in dataportal
- Naja, nicht ganz. Es geht auch im Tree View darum, dass in einem Derivat Baum, der aus einer Mischprobe entsteht, nic...
- 11:15 AM feature request #7599: treeView for specimen data in dataportal
- Ah ok,
das Ausblenden/Verstecken bezog sich nur auf die Compressed Table, richtig?
VG
A.
- 11:15 AM feature request #7599: treeView for specimen data in dataportal
- [Katja wrote:]
Hallo Andreas,
die Origin derivate sollten schon angezeigt werden, auch wenn sie keine Assozia... - 11:14 AM feature request #7599: treeView for specimen data in dataportal
- Hallo Katja,
ich habe noch eine weitere Frage.
Soweit ich das verstanden habe gilt auch folgender Anforderung: ... - 09:20 AM bug #9237 (Closed): FeatureTree SortIndex updater creates wrong sortindex
- mail NK:
ich beobachte jetzt schon seit einer Weile, dass sich die Reihenfolge der Features, die ich im TaxEditor ...
10/01/2020
- 06:18 PM feature request #9209 (Feedback): name page, registration page: show annotations for names and fieldunits
- The annotations looks good, and the indicees are placed correctly. Some cache issues in references are remaining, but...
- 05:49 PM feature request #9209 (Resolved): name page, registration page: show annotations for names and fieldunits
- Hi Henning,
please review on the test server:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datap... - 06:17 PM bug #8340 (Rejected): is accepted for Footnotes missing and with wrong index
- no need for any action on this issue since we decided to remove "is accepted" completely, see #8339
- 06:05 PM Revision 0fec6c2b (cdm-dataportal): ref #9220 adapting link creation to new registration page URL schema - adapting test
- 05:46 PM bug #9236: stopping an instance breaks the centralized logging
- Further test showed that some service endpoints in fact are broken in the situation described above.
- 05:38 PM bug #9236 (Closed): stopping an instance breaks the centralized logging
- since switching to centralized logging through logback MDC (#7085) the logging gets broken when an cdm-webapp instanc...
- 05:29 PM bug #6287 (Duplicate): Rolling cdmserver.log file only contains entries from startup phase
- this has been solved by #7085
Closing as duplicate - 04:58 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
- completed.
- 04:36 PM Revision b6e9b53a (cdm-dataportal): ref #9220 adapting link creation to new registration page URL schema
- 04:11 PM Revision 6d5ee807 (cdm-dataportal): ref #9235 fixing copy paste bug
- 02:31 PM Revision f513f3ca (cdm-dataportal): ref #9235 annotations and sources as class for better merging of footnote keys of multiple enities - commit missing class
- 01:40 PM Revision 65f9e1dc (taxeditor): restructure language preferences - continue
- 01:35 PM Revision 4b186567 (taxeditor): restructure language preferences
09/30/2020
- 06:13 PM Revision c1eeed43 (cdm-dataportal): fixingbug in test page error handling
- 05:57 PM Revision 95ef7468 (cdm-dataportal): ref #9235 annotations and sources as class for better merging of footnote keys of multiple enities
09/29/2020
- 11:26 PM task #9231: Create statistics for Euro+Med
- "Family" Query 4:
~~~ sql
-- E+M Families
SELECT famName, rankName, STATUS, n
FROM
(
... - 09:58 PM task #9231 (In Progress): Create statistics for Euro+Med
- Query for 3:
~~~ sql
-- E+M Area statistics
SELECT areaSymbol, areaName, rankName, STATUS, n
FROM
(
SELEC... - 06:04 PM Revision c3e93473 (cdm-dataportal): ref #9235 adapting test to meet real expectations
- 05:54 PM Revision 1b6afb58 (cdm-dataportal): ref #9209 adapting to test cases to new test data with more name annotations and to the code which shows more annotations
- 05:50 PM Revision 890f6c24 (cdm-dataportal): ref #9209 separating footnote keys with comma - preliminary solution
- 05:49 PM Revision faf38e61 (cdm-dataportal): adding footnotes to name relations
- 04:51 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- This is in principle solved but there are now potential layout problems due to the problem described in #9235.
We... - 03:29 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- Editorial note on the FieldUnit of the Holotype for *Paludistella asymmetrica* is already shown in the registration a...
- 04:49 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
- Currently footnote keys are created per cdm entity. When footnote keys are created for name and taxon they need to be...
- 04:38 PM bug #6821 (Worksforme): footnote keys without trailing dot character
- 03:21 PM Revision 7d926e4b (cdm-dataportal): testcase expecting either map text or map error text
- 02:58 PM Revision cd09cee6 (cdm-dataportal): ref #9209 removing last references to decomissioned function render_taxon_and_name_footnotes()
- - render_taxon_or_name() : replacing by
- compose_list_of_taxa() : refactoring duplicate code & using
to suppres... - 12:22 PM bug #8567 (Worksforme): registration search results: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
- this has been fixed already in an other context
- 12:19 PM feature request #8983: authors and team in combobox better distinguishable
- evaluation need to be done rather soon so that we know how to deal with his issue for the **Phycobank ready for submi...
- 12:00 PM bug #8579 (Worksforme): Search in PhycoBank Portal with error
- this has been fixed in the context of something else.
- 08:31 AM Revision aab5bbc7 (taxeditor): revert last commit
09/28/2020
- 05:58 PM Revision fde231f8 (cdm-dataportal): ref #9209 removing obsoltete calls to decomissioned function render_taxon_and_name_footnotes()
- 05:57 PM Revision af9ab4d7 (cdm-dataportal): typo and comment formatting
- 05:25 PM Revision 9b3f8ce8 (cdm-dataportal): ref #9209 intoducing default configuration for annotation_and_sources & preliminar solution for joining footnotes with separator
- 04:55 PM Revision a764d3d1 (cdm-dataportal): ref #9234 ignoring test temporariliy
- 04:54 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by compose_cdm_specimen_or_observation_tree_entry()
- casued by this code
~~~php
function compose_cdm_specimen_or_observation_tree_entry() {
...
... - 03:43 PM Revision 69303661 (cdm-dataportal): using annotationsAndSourceConfig managed through RenderHints in all situations
- 03:42 PM Revision ebf17187 (cdm-dataportal): code cleaning of static access
- 03:42 PM Revision 5782f8dd (cdm-dataportal): adaping test element to modified render path
- 02:44 PM bug #8547 (Resolved): Default type of a newly created inReference should depend on the type of the reference
- The default type of the newly created inReference depends of the reference now. Please review.
Updated the title. - 02:40 PM Revision 2d07da9a (taxeditor): ref #8547: default type of inreference depending on ref type
- 01:46 PM Revision 057ac9cf (cdm-dataportal): removing debug code
- 01:14 PM Revision d52836e7 (cdm-dataportal): improving documentation
- 12:54 PM Revision e97c6535 (cdm-dataportal): RenderHints can store global annotationsAndSourceConfig
- 12:53 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- this should be fixed. please review.
- 12:53 PM Revision 136d38e9 (taxeditor): ref #8874: add taxonnode to getUpdatedTaxon
- 12:15 PM Revision a4eeef88 (cdm-dataportal): moving functions for handling annotations and sources to footnotes.inc
- 12:01 PM Revision dc342fe0 (cdm-dataportal): ref #9209 fixing footnote order in registration page and adapting tests to latest changes
- 11:45 AM bug #8846 (Worksforme): Correctly parsed nomenclatural reference uncorrectly saved when taxon has relationship
- This seems to be fixed, could not reproduce this problem anymore.
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