Activity
From 09/27/2020 to 10/26/2020
10/26/2020
- 11:23 AM bug #9264 (Closed): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat (H...
10/24/2020
- 09:28 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
- this ticket duplicates #9262
10/23/2020
- 06:00 PM bug #9263 (Closed): Unify case for type designation status
- Current csv files use lower case for NameTypeDesignationStatus and upper case for SpecimenTypeDesignationStatus. This...
10/22/2020
- 12:45 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
- Mail WGB 2020-10-22:
1. ~~Fehlerhafter Literatur-Output – zwei Autoren + et al. statt Erstautor + et al., siehe an... - 12:15 PM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
- 12:15 PM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
- 12:15 PM bug #9261 (Resolved): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
- Applied in changeset commit:cdmlib|8728f23bae0e8758c46f09837af01070922d1d41.
- 11:35 AM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
- http://api.cybertaxonomy.org/caryophyllales/portal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749/taxonNodes.json fails w...
10/21/2020
- 10:02 AM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
- http://caryophyllales.org/cdm_dataportal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749
~~~
Recoverable fatal error: ...
10/20/2020
- 01:13 PM task #8081: Complete removal of redmine communication hub instances
- all code has been removed now! see #7936
- 01:12 PM task #7315 (Rejected): remove workaround RedmineTransportAccessor
- no longer needed, since the redmine message hub has been completely rejected
- 01:10 PM bug #7936 (Closed): Consider complete removal of redmine communication hub code
10/19/2020
- 11:29 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
- This ticket needs to be fixed urgently as it makes the specimen tree editor impossible to use
- 05:04 PM bug #6757: AbcdImportWizard has all configurator flags set to false
- Is this still an open issue? If yes we should fix it soon (probably a no-brainer), if not, we should close this ticke...
- 02:05 PM task #9252 (Resolved): Harmonize SpecimenOrOberservationBase related DTOs
- should be solved now, needs review
- 09:56 AM task #9259 (Closed): reduce fields in TermBase json serializations
- 09:55 AM task #9259 (Resolved): reduce fields in TermBase json serializations
- Applied in changeset commit:cdmlib|3ae4f12f20159b7e0ddb04c68f4bfc5fb17d5481.
- 09:43 AM task #9259 (In Progress): reduce fields in TermBase json serializations
- 09:43 AM task #9259 (Closed): reduce fields in TermBase json serializations
- The fields in json serializations produced by the TermBaseBeanProcessor can be reduced.
here an example of the cur...
10/16/2020
- 01:50 PM feature request #9258 (Closed): Use Partial for date in FieldUnitDTO
- 01:50 PM feature request #9258 (Resolved): Use Partial for date in FieldUnitDTO
- Applied in changeset commit:cdmlib|e0089f681023c823ee9424dfe2ac550065414474.
- 12:11 PM feature request #9258 (Closed): Use Partial for date in FieldUnitDTO
- FieldUnitDTO contains the date as pure string this has at least two problems:
* FieldUnitDTOs can not be reliably ... - 12:03 PM task #9253 (In Progress): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- 08:59 AM bug #8423 (Resolved): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- 08:59 AM bug #8423 (Closed): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
10/15/2020
- 09:30 PM bug #8423 (In Progress): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- 03:38 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
- now only the term related tasks are left to do
- 03:36 PM task #9252 (In Progress): Harmonize SpecimenOrOberservationBase related DTOs
- 12:51 PM bug #9257 (Feedback): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type `SpecimenOrObservationType.P...
- 12:14 PM bug #9257 (Closed): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- see FIXME comment in method
- 12:17 PM bug #9256 (Resolved): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
- 11:58 AM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
- mail WB:
ein unangenehmer (und, glaube ich, neuer) Bug in HomotypicGroup.csv:
In der Spalte „TypeSpecimenString... - 12:12 PM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- 11:40 AM bug #9254 (Resolved): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- Applied in changeset commit:cdmlib|5a1fd3284147ad65dc6408afa94956df19fd07e1.
- 11:39 AM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- The request on portal/occurrence/{uuid}/fieldUnitDTO.json with the uuid of a FieldUnit fails with a ClassCast exception
- 11:43 AM task #9255 (New): DerivateDataDTO implement support for TissueSample
- see TODO comment in `public static DerivateDataDTO fromEntity()` at line 62.
- 11:09 AM task #9253 (Closed): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- This intended function of `FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection...
10/14/2020
- 02:03 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
- Problems with the current implementations:
* Naming:
* PreservedSpecimenDTO should be named DerivedUnitDTO
...
10/13/2020
- 06:04 PM bug #7606 (Duplicate): compact display of CDM Point data
- closing as duplicate of #3978
- 06:02 PM task #3978 (Closed): Specimenview path: Compact representation of exactLocation
- 06:02 PM task #3978 (Resolved): Specimenview path: Compact representation of exactLocation
- 06:00 PM task #9251 (New): Specimenview path: better representation of RecordBasis
- Copied from #3978
Hallo Andreas,
Bei der Specimenanzeige gäbe es glaube ich noch einige einfache Verbesserung...
10/12/2020
- 06:02 PM discussion #7917: Revise ReferenceSystemTerms
- I checked the usage of ReferenceSystemTerms in the production dbs:
~~~
cdm_production_algaterra
-- WGS84
-... - 04:48 PM discussion #7917: Revise ReferenceSystemTerms
- Andreas Kohlbecker wrote:
> I discovered that adding 'gazetteer' was an explicit requirement which was handled in #2... - 03:26 PM feature request #9249 (Closed): compact display of collection information
- 02:22 PM feature request #9249 (Closed): compact display of collection information
- 02:48 PM feature request #9250 (New): collection page implemented
- also enable link rendering in `function render_collection($collection, $do_link = false )` by changing the default if...
- 01:02 PM bug #9248 (New): ABCD import configuration is not fail save for creation of new classification
- When licking on "do not create new classification for new taxa" but missing to define the classification for adding t...
- 09:35 AM bug #9247 (Duplicate): Link with taxon does not work correctly
- mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat ... - 09:24 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
- mail WB:
Hallo,
wir sind ja dabei, mehrere Datenpaper vorzubereiten. Die Formate sind noch nicht ganz klar (hängt...
10/09/2020
- 03:35 PM bug #9245 (Feedback): Creating derived units from existing derived unit is not possible in specimen tree editor
- Trying to add a derived unit to an already existing derived unit is not possible because the menu entry "Add/Hinzufüg...
- 01:56 PM bug #7686 (Closed): Specimen title cache issues in data portal specimen table
- to me it seems as if all issues are fixed now, except for the issue of the missing comma between two specimen type de...
- 01:24 PM feature request #3307: optionally reduce complexity in specimen display
- I think that we rather should work on a better and more concise layout than solving this with a settings option.
- 01:19 PM feature request #2985 (Closed): Improve Specimen details display
- remaining issues and suggestions from comment 23 copied to other issues.
So we can close this issue now. - 12:47 PM feature request #9244 (New): Improve NamedArea page
- copied from #2985#note-23
Show abbrev label, description, named area type, URI, valid period, and maybe also suppl... - 11:27 AM feature request #8854 (Closed): Choose new base font size for the portal
- all suggestions for further improvement have been copied to new tickets (#9242, #9243) and this issue here can thus b...
- 11:24 AM task #9243 (New): zen_dataportal theme: Discuss reduced fontsize of headings
- follow up to #8854
Walter wrote:
> Ansonsten fällt mir hier nur auf, dass die Überschriften (fact categories) e... - 11:19 AM feature request #9242 (New): cdm_taxontree: strategy for better readability
- follow up to #8854
walter wrote:
> caryophyllales_spp: Sieht gut aus, bis auf den Navigator – da wird’s dann zi...
10/08/2020
- 06:48 PM bug #9238 (Resolved): pure entities in DerivateDTO.derivates may cause LIEs
- this should be fully solved now. Ticket can be closed as long as no further problems are popping up during the testing.
- 06:40 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
- The introduction of the SpecimenTypeDesignationDTO causes a couple problems since this dto is quite incomplete so far.
- 06:38 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
- this issue is problematic also in the context of other controller methods where DerivateDTO is being involved.
Ada...
10/06/2020
- 05:25 PM bug #9240: nomenclatural status missing in name and registration page
- Yes, it can be closed. The examples in PhycoBank are displayed perfectly.
- 05:01 PM bug #9240 (Resolved): nomenclatural status missing in name and registration page
- default settings updated.
I think this ticket can be closed.
@Henning: Could you please review? - 01:26 PM bug #9240 (In Progress): nomenclatural status missing in name and registration page
- The
name render part for the nom status was missing in the default render template.
I added this to the phycob... - 11:41 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
- Navicula adminensis has status *nom. illeg* or *nom. superlf.*
https://www.phycobank.org/cdm_dataportal/name/26bd1... - 02:42 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- Example: http://phycobank.org/102598
- 11:27 AM feature request #9209 (Closed): name page, registration page: show annotations for names and fieldunits
- please enter "Etymology: " as prefix to the annotation text.
- 01:41 PM bug #9241 (New): replace/adapt descriptionPart in render templated
- after #6589 is fully solved the display of prologues in the data portal need to be adapted.
The render template de...
10/05/2020
- 01:42 PM feature request #9239 (New): When opening bulk editor via referencing objects view the selected record should have the focus
- ... so that the details view (and other views) are filled automatically
10/02/2020
- 09:34 PM task #9231: Create statistics for Euro+Med
- Zeitabhängigkeit:
~~~ sql
SELECT minYear, COUNT(*) AS n
FROM(
SELECT accId, accName.titleCache, MIN(Y) minY... - 09:16 PM feature request #7685 (Closed): Add Selenium tests for specimen table in data portal
- The test is fairly complete now.
Only tests for the indicator icons for DNA-sample and descriptive data are missin... - 08:15 PM task #9187 (Duplicate): selenium test for specimen table view
- duplicate of #7685
- 03:26 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
- this request http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/occurrence/89d36e79-3e80-4468-986e-411ca...
- 12:15 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by compose_cdm_specimen_or_observation_tree_entry()
- 11:17 AM feature request #7599: treeView for specimen data in dataportal
- [Andreas Müller wrote:]
Hallo,
wenn ich es richtig verstehe bezieht sich das auf die Derivate, die unterhalb vo... - 11:17 AM feature request #7599: treeView for specimen data in dataportal
- Naja, nicht ganz. Es geht auch im Tree View darum, dass in einem Derivat Baum, der aus einer Mischprobe entsteht, nic...
- 11:15 AM feature request #7599: treeView for specimen data in dataportal
- Ah ok,
das Ausblenden/Verstecken bezog sich nur auf die Compressed Table, richtig?
VG
A.
- 11:15 AM feature request #7599: treeView for specimen data in dataportal
- [Katja wrote:]
Hallo Andreas,
die Origin derivate sollten schon angezeigt werden, auch wenn sie keine Assozia... - 11:14 AM feature request #7599: treeView for specimen data in dataportal
- Hallo Katja,
ich habe noch eine weitere Frage.
Soweit ich das verstanden habe gilt auch folgender Anforderung: ... - 09:20 AM bug #9237 (Closed): FeatureTree SortIndex updater creates wrong sortindex
- mail NK:
ich beobachte jetzt schon seit einer Weile, dass sich die Reihenfolge der Features, die ich im TaxEditor ...
10/01/2020
- 06:18 PM feature request #9209 (Feedback): name page, registration page: show annotations for names and fieldunits
- The annotations looks good, and the indicees are placed correctly. Some cache issues in references are remaining, but...
- 05:49 PM feature request #9209 (Resolved): name page, registration page: show annotations for names and fieldunits
- Hi Henning,
please review on the test server:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datap... - 06:17 PM bug #8340 (Rejected): is accepted for Footnotes missing and with wrong index
- no need for any action on this issue since we decided to remove "is accepted" completely, see #8339
- 05:46 PM bug #9236: stopping an instance breaks the centralized logging
- Further test showed that some service endpoints in fact are broken in the situation described above.
- 05:38 PM bug #9236 (Closed): stopping an instance breaks the centralized logging
- since switching to centralized logging through logback MDC (#7085) the logging gets broken when an cdm-webapp instanc...
- 05:29 PM bug #6287 (Duplicate): Rolling cdmserver.log file only contains entries from startup phase
- this has been solved by #7085
Closing as duplicate - 04:58 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
- completed.
09/29/2020
- 11:26 PM task #9231: Create statistics for Euro+Med
- "Family" Query 4:
~~~ sql
-- E+M Families
SELECT famName, rankName, STATUS, n
FROM
(
... - 09:58 PM task #9231 (In Progress): Create statistics for Euro+Med
- Query for 3:
~~~ sql
-- E+M Area statistics
SELECT areaSymbol, areaName, rankName, STATUS, n
FROM
(
SELEC... - 04:51 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- This is in principle solved but there are now potential layout problems due to the problem described in #9235.
We... - 03:29 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- Editorial note on the FieldUnit of the Holotype for *Paludistella asymmetrica* is already shown in the registration a...
- 04:49 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
- Currently footnote keys are created per cdm entity. When footnote keys are created for name and taxon they need to be...
- 04:38 PM bug #6821 (Worksforme): footnote keys without trailing dot character
- 12:22 PM bug #8567 (Worksforme): registration search results: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
- this has been fixed already in an other context
- 12:19 PM feature request #8983: authors and team in combobox better distinguishable
- evaluation need to be done rather soon so that we know how to deal with his issue for the **Phycobank ready for submi...
- 12:00 PM bug #8579 (Worksforme): Search in PhycoBank Portal with error
- this has been fixed in the context of something else.
09/28/2020
- 04:54 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by compose_cdm_specimen_or_observation_tree_entry()
- casued by this code
~~~php
function compose_cdm_specimen_or_observation_tree_entry() {
...
... - 02:44 PM bug #8547 (Resolved): Default type of a newly created inReference should depend on the type of the reference
- The default type of the newly created inReference depends of the reference now. Please review.
Updated the title. - 12:53 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- this should be fixed. please review.
- 11:45 AM bug #8846 (Worksforme): Correctly parsed nomenclatural reference uncorrectly saved when taxon has relationship
- This seems to be fixed, could not reproduce this problem anymore.
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