Activity
From 09/16/2020 to 10/15/2020
10/15/2020
- 09:30 PM bug #8423 (In Progress): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- 03:38 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
- now only the term related tasks are left to do
- 03:36 PM task #9252 (In Progress): Harmonize SpecimenOrOberservationBase related DTOs
- 12:51 PM bug #9257 (Feedback): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type `SpecimenOrObservationType.P...
- 12:14 PM bug #9257 (Closed): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen
- see FIXME comment in method
- 12:17 PM bug #9256 (Resolved): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
- 11:58 AM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
- mail WB:
ein unangenehmer (und, glaube ich, neuer) Bug in HomotypicGroup.csv:
In der Spalte „TypeSpecimenString... - 12:12 PM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- 11:40 AM bug #9254 (Resolved): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- Applied in changeset commit:cdmlib|5a1fd3284147ad65dc6408afa94956df19fd07e1.
- 11:39 AM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
- The request on portal/occurrence/{uuid}/fieldUnitDTO.json with the uuid of a FieldUnit fails with a ClassCast exception
- 11:43 AM task #9255 (New): DerivateDataDTO implement support for TissueSample
- see TODO comment in `public static DerivateDataDTO fromEntity()` at line 62.
- 11:09 AM task #9253 (Closed): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
- This intended function of `FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection...
10/14/2020
- 02:03 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
- Problems with the current implementations:
* Naming:
* PreservedSpecimenDTO should be named DerivedUnitDTO
...
10/13/2020
- 06:04 PM bug #7606 (Duplicate): compact display of CDM Point data
- closing as duplicate of #3978
- 06:02 PM task #3978 (Closed): Specimenview path: Compact representation of exactLocation
- 06:02 PM task #3978 (Resolved): Specimenview path: Compact representation of exactLocation
- 06:00 PM task #9251 (New): Specimenview path: better representation of RecordBasis
- Copied from #3978
Hallo Andreas,
Bei der Specimenanzeige gäbe es glaube ich noch einige einfache Verbesserung...
10/12/2020
- 06:02 PM discussion #7917: Revise ReferenceSystemTerms
- I checked the usage of ReferenceSystemTerms in the production dbs:
~~~
cdm_production_algaterra
-- WGS84
-... - 04:48 PM discussion #7917: Revise ReferenceSystemTerms
- Andreas Kohlbecker wrote:
> I discovered that adding 'gazetteer' was an explicit requirement which was handled in #2... - 03:26 PM feature request #9249 (Closed): compact display of collection information
- 02:22 PM feature request #9249 (Closed): compact display of collection information
- 02:48 PM feature request #9250 (New): collection page implemented
- also enable link rendering in `function render_collection($collection, $do_link = false )` by changing the default if...
- 01:02 PM bug #9248 (New): ABCD import configuration is not fail save for creation of new classification
- When licking on "do not create new classification for new taxa" but missing to define the classification for adding t...
- 09:35 AM bug #9247 (Duplicate): Link with taxon does not work correctly
- mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat ... - 09:24 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
- mail WB:
Hallo,
wir sind ja dabei, mehrere Datenpaper vorzubereiten. Die Formate sind noch nicht ganz klar (hängt...
10/09/2020
- 03:35 PM bug #9245 (Feedback): Creating derived units from existing derived unit is not possible in specimen tree editor
- Trying to add a derived unit to an already existing derived unit is not possible because the menu entry "Add/Hinzufüg...
- 01:56 PM bug #7686 (Closed): Specimen title cache issues in data portal specimen table
- to me it seems as if all issues are fixed now, except for the issue of the missing comma between two specimen type de...
- 01:24 PM feature request #3307: optionally reduce complexity in specimen display
- I think that we rather should work on a better and more concise layout than solving this with a settings option.
- 01:19 PM feature request #2985 (Closed): Improve Specimen details display
- remaining issues and suggestions from comment 23 copied to other issues.
So we can close this issue now. - 12:47 PM feature request #9244 (New): Improve NamedArea page
- copied from #2985#note-23
Show abbrev label, description, named area type, URI, valid period, and maybe also suppl... - 11:27 AM feature request #8854 (Closed): Choose new base font size for the portal
- all suggestions for further improvement have been copied to new tickets (#9242, #9243) and this issue here can thus b...
- 11:24 AM task #9243 (New): zen_dataportal theme: Discuss reduced fontsize of headings
- follow up to #8854
Walter wrote:
> Ansonsten fällt mir hier nur auf, dass die Überschriften (fact categories) e... - 11:19 AM feature request #9242 (New): cdm_taxontree: strategy for better readability
- follow up to #8854
walter wrote:
> caryophyllales_spp: Sieht gut aus, bis auf den Navigator – da wird’s dann zi...
10/08/2020
- 06:48 PM bug #9238 (Resolved): pure entities in DerivateDTO.derivates may cause LIEs
- this should be fully solved now. Ticket can be closed as long as no further problems are popping up during the testing.
- 06:40 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
- The introduction of the SpecimenTypeDesignationDTO causes a couple problems since this dto is quite incomplete so far.
- 06:38 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
- this issue is problematic also in the context of other controller methods where DerivateDTO is being involved.
Ada...
10/06/2020
- 05:25 PM bug #9240: nomenclatural status missing in name and registration page
- Yes, it can be closed. The examples in PhycoBank are displayed perfectly.
- 05:01 PM bug #9240 (Resolved): nomenclatural status missing in name and registration page
- default settings updated.
I think this ticket can be closed.
@Henning: Could you please review? - 01:26 PM bug #9240 (In Progress): nomenclatural status missing in name and registration page
- The
name render part for the nom status was missing in the default render template.
I added this to the phycob... - 11:41 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
- Navicula adminensis has status *nom. illeg* or *nom. superlf.*
https://www.phycobank.org/cdm_dataportal/name/26bd1... - 02:42 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- Example: http://phycobank.org/102598
- 11:27 AM feature request #9209 (Closed): name page, registration page: show annotations for names and fieldunits
- please enter "Etymology: " as prefix to the annotation text.
- 01:41 PM bug #9241 (New): replace/adapt descriptionPart in render templated
- after #6589 is fully solved the display of prologues in the data portal need to be adapted.
The render template de...
10/05/2020
- 01:42 PM feature request #9239 (New): When opening bulk editor via referencing objects view the selected record should have the focus
- ... so that the details view (and other views) are filled automatically
10/02/2020
- 09:34 PM task #9231: Create statistics for Euro+Med
- Zeitabhängigkeit:
~~~ sql
SELECT minYear, COUNT(*) AS n
FROM(
SELECT accId, accName.titleCache, MIN(Y) minY... - 09:16 PM feature request #7685 (Closed): Add Selenium tests for specimen table in data portal
- The test is fairly complete now.
Only tests for the indicator icons for DNA-sample and descriptive data are missin... - 08:15 PM task #9187 (Duplicate): selenium test for specimen table view
- duplicate of #7685
- 03:26 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
- this request http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/occurrence/89d36e79-3e80-4468-986e-411ca...
- 12:15 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by compose_cdm_specimen_or_observation_tree_entry()
- 11:17 AM feature request #7599: treeView for specimen data in dataportal
- [Andreas Müller wrote:]
Hallo,
wenn ich es richtig verstehe bezieht sich das auf die Derivate, die unterhalb vo... - 11:17 AM feature request #7599: treeView for specimen data in dataportal
- Naja, nicht ganz. Es geht auch im Tree View darum, dass in einem Derivat Baum, der aus einer Mischprobe entsteht, nic...
- 11:15 AM feature request #7599: treeView for specimen data in dataportal
- Ah ok,
das Ausblenden/Verstecken bezog sich nur auf die Compressed Table, richtig?
VG
A.
- 11:15 AM feature request #7599: treeView for specimen data in dataportal
- [Katja wrote:]
Hallo Andreas,
die Origin derivate sollten schon angezeigt werden, auch wenn sie keine Assozia... - 11:14 AM feature request #7599: treeView for specimen data in dataportal
- Hallo Katja,
ich habe noch eine weitere Frage.
Soweit ich das verstanden habe gilt auch folgender Anforderung: ... - 09:20 AM bug #9237 (Closed): FeatureTree SortIndex updater creates wrong sortindex
- mail NK:
ich beobachte jetzt schon seit einer Weile, dass sich die Reihenfolge der Features, die ich im TaxEditor ...
10/01/2020
- 06:18 PM feature request #9209 (Feedback): name page, registration page: show annotations for names and fieldunits
- The annotations looks good, and the indicees are placed correctly. Some cache issues in references are remaining, but...
- 05:49 PM feature request #9209 (Resolved): name page, registration page: show annotations for names and fieldunits
- Hi Henning,
please review on the test server:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datap... - 06:17 PM bug #8340 (Rejected): is accepted for Footnotes missing and with wrong index
- no need for any action on this issue since we decided to remove "is accepted" completely, see #8339
- 05:46 PM bug #9236: stopping an instance breaks the centralized logging
- Further test showed that some service endpoints in fact are broken in the situation described above.
- 05:38 PM bug #9236 (Closed): stopping an instance breaks the centralized logging
- since switching to centralized logging through logback MDC (#7085) the logging gets broken when an cdm-webapp instanc...
- 05:29 PM bug #6287 (Duplicate): Rolling cdmserver.log file only contains entries from startup phase
- this has been solved by #7085
Closing as duplicate - 04:58 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
- completed.
09/29/2020
- 11:26 PM task #9231: Create statistics for Euro+Med
- "Family" Query 4:
~~~ sql
-- E+M Families
SELECT famName, rankName, STATUS, n
FROM
(
... - 09:58 PM task #9231 (In Progress): Create statistics for Euro+Med
- Query for 3:
~~~ sql
-- E+M Area statistics
SELECT areaSymbol, areaName, rankName, STATUS, n
FROM
(
SELEC... - 04:51 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- This is in principle solved but there are now potential layout problems due to the problem described in #9235.
We... - 03:29 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- Editorial note on the FieldUnit of the Holotype for *Paludistella asymmetrica* is already shown in the registration a...
- 04:49 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
- Currently footnote keys are created per cdm entity. When footnote keys are created for name and taxon they need to be...
- 04:38 PM bug #6821 (Worksforme): footnote keys without trailing dot character
- 12:22 PM bug #8567 (Worksforme): registration search results: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
- this has been fixed already in an other context
- 12:19 PM feature request #8983: authors and team in combobox better distinguishable
- evaluation need to be done rather soon so that we know how to deal with his issue for the **Phycobank ready for submi...
- 12:00 PM bug #8579 (Worksforme): Search in PhycoBank Portal with error
- this has been fixed in the context of something else.
09/28/2020
- 04:54 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by compose_cdm_specimen_or_observation_tree_entry()
- casued by this code
~~~php
function compose_cdm_specimen_or_observation_tree_entry() {
...
... - 02:44 PM bug #8547 (Resolved): Default type of a newly created inReference should depend on the type of the reference
- The default type of the newly created inReference depends of the reference now. Please review.
Updated the title. - 12:53 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- this should be fixed. please review.
- 11:45 AM bug #8846 (Worksforme): Correctly parsed nomenclatural reference uncorrectly saved when taxon has relationship
- This seems to be fixed, could not reproduce this problem anymore.
09/25/2020
- 02:41 PM bug #4964 (Duplicate): footnotes for taxonRelationship sources and annotations should be rendered together
- closing as duplicate of #8543
- 10:17 AM task #9189 (Resolved): Move datasource view to taxeditor.local
- 10:03 AM task #9233 (In Progress): Provide feedback mechanism for dataportals
- Hallo,
ich habe mich daran gemacht ein Konzept für die Umsetzung der Feedbackfunktion zu entwickeln.
Wenn man d...
09/24/2020
- 06:56 PM task #9233: Provide feedback mechanism for dataportals
Eine weniger störende, aber wohl auch effektive Maßnahme ist es, nur eine „I am no robot“ checkbox zu haben – d...- 06:51 PM task #9233 (New): Provide feedback mechanism for dataportals
- Requirements:
* allow feedback for annonymous users per cdm content page
* store feedback in db
* feedback refer... - 06:25 PM feature request #9232: Name page: taxon section improvement
- Hallo,
bezüglich „Taxon for this name”:
die derzeitige Anzeige (wie auf http://cichorieae.e-taxonomy.net/p... - 06:22 PM feature request #9232 (New): Name page: taxon section improvement
- copied from #8391
A) distinguish taxa which are directly associated to the name and those only using the same simp... - 06:17 PM feature request #8304: Name page redirects to according taxon depending on query parameter
- Hi Andreas, I am voting to close this issue as it is 1. fully solved and secondly the solution is not preventing us f...
- 06:03 PM feature request #8108 (Closed): Name page shows complete name information (I)
- According my interpretation of the last comment to this ticket I am closing it now.
Please reopen if I am misinter... - 05:28 PM task #9231: Create statistics for Euro+Med
- Query for 2:
~~~ sql
-- EM Query Superareale
SELECT areaMarker, rankName, STATUS, n
FROM
(
SELECT 'All' AS... - 05:22 PM task #9231: Create statistics for Euro+Med
- Query for 1.
~~~sql
-- E+M Full Area
SELECT rankName, STATUS, n
FROM
(
SELECT 'All' A... - 05:07 PM task #9231 (In Progress): Create statistics for Euro+Med
- Generally absent taxa or taxa without distribution should not be included. Same for unpublished taxa and "valueless" ...
- 03:36 PM bug #9124: Altitude feature should have [m] as measurement unit by default
- The first implementatin of the update script had a serious bug as it filled the table DefinedTermBase_StatisticalMeas...
- 12:29 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
- Similar problem to the already solved one with displayed unpublished names related to published names (#8328)
The ...
09/22/2020
- 07:38 PM task #9227 (Worksforme): corrected entry cannot be saved
- Kind of Unit can be added in Vaadin,
if (1) this is the first step before
(2) editing other parts and (3) saving th... - 10:58 AM task #9227: corrected entry cannot be saved
- ![](picture360-1.png)
- 06:45 PM feature request #9224: openlayers map handles server error per layer and presents a user message
- made available to production servers as HFX release 5.17.1.
Needs more testing though regarding error conditions ... - 06:28 PM feature request #9224 (In Progress): openlayers map handles server error per layer and presents a user message
- 06:26 PM bug #6356 (Resolved): taxontree sort order as in editor
- Please confirm that the sort order is now as expected.
- 06:25 PM bug #6356: taxontree sort order as in editor
- The sort code in `cdm_taxontree_populate()` mentioned above is related to the no longer used special featured of the ...
- 06:12 PM bug #6356 (In Progress): taxontree sort order as in editor
- 04:52 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- tested as being fully functional
- 04:52 PM feature request #9229 (Resolved): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- Applied in changeset commit:cdm-vaadin|84b030bfbe7c9c0df2b160149c23bb5add938b2a.
- 02:43 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- due to the changes made in #6581 the setter for NomenclaturalStatus in Taxon Name checks for empty SingleSource entit...
09/21/2020
- 10:43 AM task #9228 (In Progress): Adaptations to allow editing Centaurea in Flora of Greece
- It has been decided to edit Centaurea data in Flora of Greece. For making this possible a couple of issues need to be...
- 10:33 AM task #9227: corrected entry cannot be saved
- http://phycobank.org/7587 (Import of a 1999 published entry)See screen shot
In TaxEDITor the addition was possible... - 09:58 AM task #9227 (Feedback): corrected entry cannot be saved
- Could you try fix the type designation in the Taxonomic Editor by adding the missing "Kind of Unit" information?
09/17/2020
- 05:08 PM task #9227 (Worksforme): corrected entry cannot be saved
- Entry from 1999 is missing the mandatory entry Kind of Unit = Specimen.
Action: Add Editorial note "PhycoBank (17 ... - 03:10 PM feature request #6589 (In Progress): Handle protologue as original source with URI link
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