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From 09/16/2020 to 10/15/2020

10/15/2020

09:34 PM Revision 5d299395 (cdmlib): ref #9253 cleaning up caller of OccurrenceServiceImpl.findFieldUnitDT...
Andreas Kohlbecker
09:30 PM bug #8423 (In Progress): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths...
Andreas Kohlbecker
09:26 PM Revision 864cab25 (cdmlib): ref #8423 raising log level of problematic situation and code cleaning
Andreas Kohlbecker
05:40 PM Revision b1a675d1 (cdmlib): ref #8423 ref #9253, ref #9252 fixing duplicate addition of DerivedUn...
Andreas Kohlbecker
05:28 PM Revision 970272ed (cdmlib): ref #9252 basing SpecimenOrObservationBaseDTO on TypedEntityReference
Andreas Kohlbecker
04:48 PM Revision 7d539adb (cdm-dataportal): ref #9252 supressing FieldUnitDTO fields in specimen tree view
Andreas Kohlbecker
04:13 PM Revision 5830e16a (cdm-dataportal): ref #9252 adapting specimen tree view to more data coming wit...
Andreas Kohlbecker
03:38 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
now only the term related tasks are left to do Andreas Kohlbecker
03:36 PM task #9252 (In Progress): Harmonize SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker
03:35 PM Revision a9527b12 (cdmlib): ref #9252 determinig hasTypes from actual data and fixing type probel...
Andreas Kohlbecker
03:26 PM Revision 90957da7 (cdmlib-apps): latest changes to GreeceImageActivator
Andreas Müller
12:51 PM bug #9257 (Feedback): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fi...
Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type `SpecimenOrObservationType.P... Andreas Kohlbecker
12:14 PM bug #9257 (Closed): revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fiel...
see FIXME comment in method Andreas Kohlbecker
12:46 PM Revision aa52b6f0 (cdmlib): ref #9257 comments including questions on missing filtering in the Dr...
Andreas Kohlbecker
12:27 PM Revision 06b2c5f6 (cdmlib): ref #9252 ref #9257 exposing SpecimenOrObservationType filter to fact...
Andreas Kohlbecker
12:17 PM bug #9256 (Resolved): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
Katja Luther
11:58 AM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
mail WB:
ein unangenehmer (und, glaube ich, neuer) Bug in HomotypicGroup.csv:
In der Spalte „TypeSpecimenString...
Katja Luther
12:12 PM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
Andreas Kohlbecker
11:40 AM bug #9254 (Resolved): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
Applied in changeset commit:cdmlib|5a1fd3284147ad65dc6408afa94956df19fd07e1. Andreas Kohlbecker
11:39 AM bug #9254 (Closed): portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception
The request on portal/occurrence/{uuid}/fieldUnitDTO.json with the uuid of a FieldUnit fails with a ClassCast exception Andreas Kohlbecker
12:10 PM Revision 80fc1bdb (cdmlib): ref #9256: fix bug in nametypedesignation string
Katja Luther
11:43 AM task #9255 (New): DerivateDataDTO implement support for TissueSample
see TODO comment in `public static DerivateDataDTO fromEntity()` at line 62. Andreas Kohlbecker
11:40 AM Revision 5a1fd328 (cdmlib): fix #9254 removing restriction to DerivedUnit in conmroller method
Andreas Kohlbecker
11:25 AM Revision ddef3633 (cdmlib): ref #9253 todo comment
Andreas Kohlbecker
11:09 AM task #9253 (Closed): revise OccurrenceServiceImpl.findFieldUnitDTO(..)
This intended function of `FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection... Andreas Kohlbecker
08:52 AM Revision 8dcc00a3 (cdmlib): ref #9252 adapting service method no new DTO name
Andreas Kohlbecker
08:34 AM Revision a72a8bbf (taxeditor): ref #9252 adapting texedior to renamed DTO classes
Andreas Kohlbecker

10/14/2020

02:46 PM Revision ca486eb2 (cdm-dataportal): ref #9252 harmonizing SpecimenOrOberservationBase related DTO...
Andreas Kohlbecker
02:46 PM Revision 0979f889 (cdmlib): ref #9252 harmonizing SpecimenOrOberservationBase related DTOs - rena...
Andreas Kohlbecker
02:14 PM Revision 005402b8 (cdmlib): ref #9252 harmonizing SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker
02:04 PM Revision f99e8546 (cdmlib): ref #9252 harmonizing SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker
02:03 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
Problems with the current implementations:
* Naming:
* PreservedSpecimenDTO should be named DerivedUnitDTO
...
Andreas Kohlbecker
11:54 AM Revision 71a05785 (cdm-dataportal): ref #8419 refactoring to harmonize dto and entitiy code
Andreas Kohlbecker

10/13/2020

06:04 PM bug #7606 (Duplicate): compact display of CDM Point data
closing as duplicate of #3978 Andreas Kohlbecker
06:02 PM task #3978 (Closed): Specimenview path: Compact representation of exactLocation
Andreas Kohlbecker
06:02 PM task #3978 (Resolved): Specimenview path: Compact representation of exactLocation
Andreas Kohlbecker
06:00 PM task #9251 (New): Specimenview path: better representation of RecordBasis
Copied from #3978
Hallo Andreas,
Bei der Specimenanzeige gäbe es glaube ich noch einige einfache Verbesserung...
Andreas Kohlbecker
05:57 PM Revision 441f6cf1 (cdm-dataportal): ref #9249 ref #3978 using compact collection and point repres...
Andreas Kohlbecker
05:56 PM Revision 8cbcd5c2 (cdmlib): ref #9249 ref #3978 harmonization of FieldUnit and Derivate DTOs:
- using pointDTO in all webservices
- cleaning up FieldUnitDTO and DerivateDTO
- using CollectionDTO on DerivateDTO
Andreas Kohlbecker
02:17 PM Revision df6ac42d (cdmlib): ref #8774: smaller changes in termDtos
Katja Luther
12:32 PM Revision ea5bc5a6 (cdmlib): TypedEntityReference reducing factory methods to one
Andreas Kohlbecker
12:25 PM Revision 40f78baa (cdmlib): ref #3978 PointBeanProcessor: sexagesimalstring without geospacial re...
Andreas Kohlbecker
12:05 PM Revision 667fce45 (cdm-dataportal): removing empty theme file
Andreas Kohlbecker
12:03 PM Revision 7a9e4b14 (cdm-dataportal): moving fuinction to occurrences.inc
Andreas Kohlbecker

10/12/2020

06:02 PM task #7917: Revise ReferenceSystemTerms
I checked the usage of ReferenceSystemTerms in the production dbs:
~~~
cdm_production_algaterra
-- WGS84
-...
Andreas Kohlbecker
04:48 PM task #7917: Revise ReferenceSystemTerms
Andreas Kohlbecker wrote:
> I discovered that adding 'gazetteer' was an explicit requirement which was handled in #2...
Andreas Kohlbecker
03:43 PM Revision 25d3f406 (cdm-dataportal): ref #9249 better testing of compact collection rendering
Andreas Kohlbecker
03:35 PM Revision cabd5376 (cdm-dataportal): ref #9249 adapting tests to compact collection rendering
Andreas Kohlbecker
03:26 PM feature request #9249 (Closed): compact display of collection information
Andreas Kohlbecker
02:22 PM feature request #9249 (Closed): compact display of collection information
Andreas Kohlbecker
03:25 PM Revision dba9669c (cdm-dataportal): ref #9249, ref #9250 moving connection and specimen render fu...
Andreas Kohlbecker
03:24 PM Revision e430307f (cdm-dataportal): moving foonote key compare function to footnotes.inc
Andreas Kohlbecker
03:21 PM Revision ae93540f (cdm-dataportal): ref #9249, ref #9250 compact collection representation with i...
Andreas Kohlbecker
03:18 PM Revision 07e3f63c (cdmlib): fix test - last commit
Katja Luther
03:02 PM Revision 2f7b5d9b (cdmlib): fix test - last commit
Katja Luther
02:48 PM feature request #9250 (New): collection page implemented
also enable link rendering in `function render_collection($collection, $do_link = false )` by changing the default if... Andreas Kohlbecker
02:46 PM Revision 8b01b5ad (cdm-dataportal): ref #9249 compact collection representation
Andreas Kohlbecker
02:40 PM Revision b90b38e7 (cdmlib): revert change in TermNode
Katja Luther
02:37 PM Revision cb30da3c (cdmlib): fix test -continue
Katja Luther
02:21 PM Revision 74f5eff7 (cdmlib): fix test -continue
Katja Luther
02:05 PM Revision 94e640ef (cdmlib): fix test -continue
Katja Luther
01:46 PM Revision baef7a46 (cdmlib): fix test -continue
Katja Luther
01:30 PM Revision 98e7bb0d (cdmlib): fix test
Katja Luther
01:16 PM Revision 10f9c53c (cdmlib): fix test
Katja Luther
01:02 PM bug #9248 (New): ABCD import configuration is not fail save for creation of new classification
When licking on "do not create new classification for new taxa" but missing to define the classification for adding t... Katja Luther
11:15 AM Revision 3037370e (cdmlib): ref #8774: dto and service adaptions to use dtos for term tree editors
Katja Luther
10:54 AM Revision 2e1c204d (taxeditor): ref #8774: adapt term tree editors to usage of termDtos
Katja Luther
09:35 AM bug #9247 (Duplicate): Link with taxon does not work correctly
mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat ...
Katja Luther
09:24 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
mail WB:
Hallo,
wir sind ja dabei, mehrere Datenpaper vorzubereiten. Die Formate sind noch nicht ganz klar (hängt...
Katja Luther

10/09/2020

04:58 PM Revision ecc0d83e (cdm-dataportal): adapting specimen test to extended testdata
Andreas Kohlbecker
03:35 PM bug #9245 (Feedback): Creating derived units from existing derived unit is not possible in specim...
Trying to add a derived unit to an already existing derived unit is not possible because the menu entry "Add/Hinzufüg... Katja Luther
01:56 PM bug #7686 (Closed): Specimen title cache issues in data portal specimen table
to me it seems as if all issues are fixed now, except for the issue of the missing comma between two specimen type de... Andreas Kohlbecker
01:24 PM feature request #3307: optionally reduce complexity in specimen display
I think that we rather should work on a better and more concise layout than solving this with a settings option. Andreas Kohlbecker
01:19 PM feature request #2985 (Closed): Improve Specimen details display
remaining issues and suggestions from comment 23 copied to other issues.
So we can close this issue now.
Andreas Kohlbecker
12:47 PM feature request #9244 (New): Improve NamedArea page
copied from #2985#note-23
Show abbrev label, description, named area type, URI, valid period, and maybe also suppl...
Andreas Kohlbecker
11:27 AM feature request #8854 (Closed): Choose new base font size for the portal
all suggestions for further improvement have been copied to new tickets (#9242, #9243) and this issue here can thus b... Andreas Kohlbecker
11:24 AM task #9243 (New): zen_dataportal theme: Discuss reduced fontsize of headings
follow up to #8854
Walter wrote:
> Ansonsten fällt mir hier nur auf, dass die Überschriften (fact categories) e...
Andreas Kohlbecker
11:19 AM feature request #9242 (New): cdm_taxontree: strategy for better readability
follow up to #8854
walter wrote:
> caryophyllales_spp: Sieht gut aus, bis auf den Navigator – da wird’s dann zi...
Andreas Kohlbecker
09:47 AM Revision ec3ca64c (cdmlib): ref #9238 removing quick fix allied in 4d6b5667 and adapting config f...
Andreas Kohlbecker

10/08/2020

06:50 PM Revision a584de6a (cdm-dataportal): ref #7599 adapting derivate tree view to DTOs and solving cod...
Andreas Kohlbecker
06:48 PM bug #9238 (Resolved): pure entities in DerivateDTO.derivates may cause LIEs
this should be fully solved now. Ticket can be closed as long as no further problems are popping up during the testing. Andreas Kohlbecker
06:40 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
The introduction of the SpecimenTypeDesignationDTO causes a couple problems since this dto is quite incomplete so far. Andreas Kohlbecker
06:38 PM bug #9238: pure entities in DerivateDTO.derivates may cause LIEs
this issue is problematic also in the context of other controller methods where DerivateDTO is being involved.
Ada...
Andreas Kohlbecker
06:42 PM Revision 1d9ed98e (cdmlib): ref #9238 extending SpecimenTypeDesignationDTO with more fields and a...
Andreas Kohlbecker

10/07/2020

02:57 PM Revision e2334714 (cdmlib): ref #9238 replacing entitiy by SpecimenTypeDesignationDTO in DerivateDTO
Andreas Kohlbecker
01:50 PM Revision 99e578a9 (cdm-dataportal): Merge branch 'support/5.17.2' into develop
Andreas Kohlbecker
01:48 PM Revision 7dc47dea (cdm-dataportal): using new wms query form for legend queries
Andreas Kohlbecker
01:47 PM Revision 6a5d8049 (cdm-dataportal): function doc
Andreas Kohlbecker
11:32 AM Revision 1ade0e00 (cdmlib): updated cdmTest.h2.db (not sure anymore why this was necessary)
Andreas Müller
11:28 AM Revision 975cc221 (cdmlib-apps): ref #6581 adapt BerlinModelTaxonNameExport to new nomenclatural ...
Andreas Müller
11:27 AM Revision 6b217d8c (cdmlib-apps): ref #9204 some adaptation to latest dependencies to app-import
Andreas Müller

10/06/2020

05:25 PM bug #9240: nomenclatural status missing in name and registration page
Yes, it can be closed. The examples in PhycoBank are displayed perfectly. Wolf-Henning Kusber
05:01 PM bug #9240 (Resolved): nomenclatural status missing in name and registration page
default settings updated.
I think this ticket can be closed.
@Henning: Could you please review?
Andreas Kohlbecker
01:26 PM bug #9240 (In Progress): nomenclatural status missing in name and registration page
The
name render part for the nom status was missing in the default render template.
I added this to the phycob...
Andreas Kohlbecker
11:41 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
Navicula adminensis has status *nom. illeg* or *nom. superlf.*
https://www.phycobank.org/cdm_dataportal/name/26bd1...
Andreas Kohlbecker
04:57 PM Revision 77a553e1 (cdm-dataportal): drush commands to monitor name render configurations - adding...
Andreas Kohlbecker
04:06 PM Revision 3d1eea61 (cdm-dataportal): drush commands to monitor name render configurations
Andreas Kohlbecker
03:34 PM Revision e4821eeb (cdm-dataportal): ref #9240 homonym render template again separately
Andreas Kohlbecker
03:32 PM Revision 35abbad4 (cdm-dataportal): ref #9240 inntroducing class NameRenderConfiguration for all ...
Andreas Kohlbecker
02:42 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
Example: http://phycobank.org/102598 Wolf-Henning Kusber
11:27 AM feature request #9209 (Closed): name page, registration page: show annotations for names and fiel...
please enter "Etymology: " as prefix to the annotation text.
Andreas Kohlbecker
01:42 PM Revision a48a45cd (cdm-dataportal): ref #9240 merging identical render templates
Andreas Kohlbecker
01:41 PM bug #9241 (New): replace/adapt descriptionPart in render templated
after #6589 is fully solved the display of prologues in the data portal need to be adapted.
The render template de...
Andreas Kohlbecker
01:32 PM Revision 29e4bc66 (cdm-dataportal): ref #9240 adding statusPart to 'DEFAULT' and 'acceptedFor,typ...
Andreas Kohlbecker
08:58 AM Revision 3c6809f7 (cdm-dataportal): applying latest version of openlayer_map.js from develop bran...
Andreas Kohlbecker

10/05/2020

10:42 PM Revision 92178800 (cdm-dataportal): ref #9224 adapting openlayers map from jsonp to json ajax
Andreas Kohlbecker
03:38 PM Revision d3b4bec1 (cdm-dataportal): ref #7685 adapting test
Andreas Kohlbecker
03:26 PM Revision 3305483b (cdm-dataportal): ref #7685 predictive order of derivates
Andreas Kohlbecker
02:26 PM Revision 3e75dc06 (cdm-dataportal): ref #9224 error messages control with defined dom element id
Andreas Kohlbecker
02:11 PM Revision b2776a52 (cdm-dataportal): ref #9224 better error message in log
Andreas Kohlbecker
01:44 PM Revision 6a1fef21 (cdm-dataportal): no point testing for tabs
Andreas Kohlbecker
01:42 PM feature request #9239 (New): When opening bulk editor via referencing objects view the selected r...
... so that the details view (and other views) are filled automatically Andreas Müller

10/02/2020

09:39 PM Revision b34b4c6c (cdm-dataportal): ref #7685 adapting other tests to extendet test data
Andreas Kohlbecker
09:34 PM task #9231: Create statistics for Euro+Med
Zeitabhängigkeit:
~~~ sql
SELECT minYear, COUNT(*) AS n
FROM(
SELECT accId, accName.titleCache, MIN(Y) minY...
Andreas Müller
09:16 PM feature request #7685 (Closed): Add Selenium tests for specimen table in data portal
The test is fairly complete now.
Only tests for the indicator icons for DNA-sample and descriptive data are missin...
Andreas Kohlbecker
09:10 PM Revision 12178f01 (cdm-dataportal): ref #7685 testing for detail image in compressed specimen table
Andreas Kohlbecker
08:18 PM Revision 8c3d9651 (cdm-dataportal): ref #7685 test for compressed specimen table implemented, tes...
Andreas Kohlbecker
08:15 PM task #9187 (Duplicate): selenium test for specimen table view
duplicate of #7685 Andreas Kohlbecker
03:27 PM Revision 4d6b5667 (cdmlib): ref #9238 quick fix at least for the test data in reference_int Gleno...
Andreas Kohlbecker
03:26 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
this request http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/occurrence/89d36e79-3e80-4468-986e-411ca... Andreas Kohlbecker
12:15 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by co...
Andreas Kohlbecker
12:14 PM Revision 292b1ebe (cdm-dataportal): ref #7599, ref #7599 specimen tree view: fixing bug and adapt...
Andreas Kohlbecker
11:55 AM Revision 7a2bc944 (cdm-dataportal): moving functions to other file
Andreas Kohlbecker
11:54 AM Revision 430fcb76 (cdm-dataportal): refactoring, cleaning up, and bug fixing related to specimen ...
Andreas Kohlbecker
11:17 AM feature request #7599: treeView for specimen data in dataportal
[Andreas Müller wrote:]
Hallo,
wenn ich es richtig verstehe bezieht sich das auf die Derivate, die unterhalb vo...
Andreas Kohlbecker
11:17 AM feature request #7599: treeView for specimen data in dataportal
Naja, nicht ganz. Es geht auch im Tree View darum, dass in einem Derivat Baum, der aus einer Mischprobe entsteht, nic... Andreas Kohlbecker
11:15 AM feature request #7599: treeView for specimen data in dataportal
Ah ok,
das Ausblenden/Verstecken bezog sich nur auf die Compressed Table, richtig?
VG
A.
Andreas Kohlbecker
11:15 AM feature request #7599: treeView for specimen data in dataportal
[Katja wrote:]
Hallo Andreas,
die Origin derivate sollten schon angezeigt werden, auch wenn sie keine Assozia...
Andreas Kohlbecker
11:14 AM feature request #7599: treeView for specimen data in dataportal
Hallo Katja,
ich habe noch eine weitere Frage.
Soweit ich das verstanden habe gilt auch folgender Anforderung: ...
Andreas Kohlbecker
09:20 AM bug #9237 (Closed): FeatureTree SortIndex updater creates wrong sortindex
mail NK:
ich beobachte jetzt schon seit einer Weile, dass sich die Reihenfolge der Features, die ich im TaxEditor ...
Katja Luther

10/01/2020

06:18 PM feature request #9209 (Feedback): name page, registration page: show annotations for names and fi...
The annotations looks good, and the indicees are placed correctly. Some cache issues in references are remaining, but... Wolf-Henning Kusber
05:49 PM feature request #9209 (Resolved): name page, registration page: show annotations for names and fi...
Hi Henning,
please review on the test server:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datap...
Andreas Kohlbecker
06:17 PM bug #8340 (Rejected): is accepted for Footnotes missing and with wrong index
no need for any action on this issue since we decided to remove "is accepted" completely, see #8339 Andreas Kohlbecker
06:05 PM Revision 0fec6c2b (cdm-dataportal): ref #9220 adapting link creation to new registration page URL...
Andreas Kohlbecker
05:46 PM bug #9236: stopping an instance breaks the centralized logging
Further test showed that some service endpoints in fact are broken in the situation described above. Andreas Kohlbecker
05:38 PM bug #9236 (New): stopping an instance breaks the centralized logging
since switching to centralized logging through logback MDC (#7085) the logging gets broken when an cdm-webapp instanc... Andreas Kohlbecker
05:29 PM bug #6287 (Duplicate): Rolling cdmserver.log file only contains entries from startup phase
this has been solved by #7085
Closing as duplicate
Andreas Kohlbecker
04:58 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
completed. Andreas Kohlbecker
04:36 PM Revision b6e9b53a (cdm-dataportal): ref #9220 adapting link creation to new registration page URL...
Andreas Kohlbecker
04:11 PM Revision 6d5ee807 (cdm-dataportal): ref #9235 fixing copy paste bug
Andreas Kohlbecker
02:31 PM Revision f513f3ca (cdm-dataportal): ref #9235 annotations and sources as class for better merging...
Andreas Kohlbecker
01:40 PM Revision 65f9e1dc (taxeditor): restructure language preferences - continue
Katja Luther
01:35 PM Revision 4b186567 (taxeditor): restructure language preferences
Katja Luther

09/30/2020

06:13 PM Revision c1eeed43 (cdm-dataportal): fixingbug in test page error handling
Andreas Kohlbecker
05:57 PM Revision 95ef7468 (cdm-dataportal): ref #9235 annotations and sources as class for better merging...
Andreas Kohlbecker

09/29/2020

11:26 PM task #9231: Create statistics for Euro+Med
"Family" Query 4:
~~~ sql
-- E+M Families

SELECT famName, rankName, STATUS, n
FROM
(
...
Andreas Müller
09:58 PM task #9231 (In Progress): Create statistics for Euro+Med
Query for 3:
~~~ sql
-- E+M Area statistics
SELECT areaSymbol, areaName, rankName, STATUS, n
FROM
(
SELEC...
Andreas Müller
06:04 PM Revision c3e93473 (cdm-dataportal): ref #9235 adapting test to meet real expectations
Andreas Kohlbecker
05:54 PM Revision 1b6afb58 (cdm-dataportal): ref #9209 adapting to test cases to new test data with more n...
Andreas Kohlbecker
05:50 PM Revision 890f6c24 (cdm-dataportal): ref #9209 separating footnote keys with comma - preliminary s...
Andreas Kohlbecker
05:49 PM Revision faf38e61 (cdm-dataportal): adding footnotes to name relations
Andreas Kohlbecker
04:51 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
This is in principle solved but there are now potential layout problems due to the problem described in #9235.
We...
Andreas Kohlbecker
03:29 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
Editorial note on the FieldUnit of the Holotype for *Paludistella asymmetrica* is already shown in the registration a... Andreas Kohlbecker
04:49 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
Currently footnote keys are created per cdm entity. When footnote keys are created for name and taxon they need to be... Andreas Kohlbecker
04:38 PM bug #6821 (Worksforme): footnote keys without trailing dot character
Andreas Kohlbecker
03:21 PM Revision 7d926e4b (cdm-dataportal): testcase expecting either map text or map error text
Andreas Kohlbecker
02:58 PM Revision cd09cee6 (cdm-dataportal): ref #9209 removing last references to decomissioned function ...
- render_taxon_or_name() : replacing by
- compose_list_of_taxa() : refactoring duplicate code & using
to suppres...
Andreas Kohlbecker
12:22 PM bug #8567 (Worksforme): registration search results: cdm_compose_url(): missing pathParameter 0 f...
this has been fixed already in an other context Andreas Kohlbecker
12:19 PM feature request #8983: authors and team in combobox better distinguishable
evaluation need to be done rather soon so that we know how to deal with his issue for the **Phycobank ready for submi... Andreas Kohlbecker
12:00 PM bug #8579 (Worksforme): Search in PhycoBank Portal with error
this has been fixed in the context of something else. Andreas Kohlbecker
08:31 AM Revision aab5bbc7 (taxeditor): revert last commit
Katja Luther

09/28/2020

05:58 PM Revision fde231f8 (cdm-dataportal): ref #9209 removing obsoltete calls to decomissioned function ...
Andreas Kohlbecker
05:57 PM Revision af9ab4d7 (cdm-dataportal): typo and comment formatting
Andreas Kohlbecker
05:25 PM Revision 9b3f8ce8 (cdm-dataportal): ref #9209 intoducing default configuration for annotation_and...
Andreas Kohlbecker
04:55 PM Revision a764d3d1 (cdm-dataportal): ref #9234 ignoring test temporariliy
Andreas Kohlbecker
04:54 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by co...
casued by this code
~~~php
function compose_cdm_specimen_or_observation_tree_entry() {
...
...
Andreas Kohlbecker
03:43 PM Revision 69303661 (cdm-dataportal): using annotationsAndSourceConfig managed through RenderHints ...
Andreas Kohlbecker
03:42 PM Revision ebf17187 (cdm-dataportal): code cleaning of static access
Andreas Kohlbecker
03:42 PM Revision 5782f8dd (cdm-dataportal): adaping test element to modified render path
Andreas Kohlbecker
02:44 PM bug #8547 (Resolved): Default type of a newly created inReference should depend on the type of th...
The default type of the newly created inReference depends of the reference now. Please review.
Updated the title.
Katja Luther
02:40 PM Revision 2d07da9a (taxeditor): ref #8547: default type of inreference depending on ref type
Katja Luther
01:46 PM Revision 057ac9cf (cdm-dataportal): removing debug code
Andreas Kohlbecker
01:14 PM Revision d52836e7 (cdm-dataportal): improving documentation
Andreas Kohlbecker
12:54 PM Revision e97c6535 (cdm-dataportal): RenderHints can store global annotationsAndSourceConfig
Andreas Kohlbecker
12:53 PM bug #8874: move taxon is reverted when taxon is edited afterwards
this should be fixed. please review. Katja Luther
12:53 PM Revision 136d38e9 (taxeditor): ref #8874: add taxonnode to getUpdatedTaxon
Katja Luther
12:15 PM Revision a4eeef88 (cdm-dataportal): moving functions for handling annotations and sources to foot...
Andreas Kohlbecker
12:01 PM Revision dc342fe0 (cdm-dataportal): ref #9209 fixing footnote order in registration page and adap...
Andreas Kohlbecker
11:45 AM bug #8846 (Worksforme): Correctly parsed nomenclatural reference uncorrectly saved when taxon has...
This seems to be fixed, could not reproduce this problem anymore. Katja Luther

09/25/2020

04:48 PM Revision 7e3f68ec (cdm-dataportal): ref #9209 renabling previously comitted fix for missing name ...
Andreas Kohlbecker
04:38 PM Revision 1d191032 (cdm-dataportal): further claning up and harmonization of annotations_and_sourc...
Andreas Kohlbecker
04:27 PM Revision 6743dd7f (cdm-dataportal): better converstion from drupal settings to handle_annotations...
Andreas Kohlbecker
04:06 PM Revision f4ac05a8 (cdm-dataportal): moving function annotations_and_sources_config function
Andreas Kohlbecker
03:16 PM Revision f34df40f (cdm-dataportal): disabling erroneoulsy committed code
Andreas Kohlbecker
03:03 PM Revision bde9a2a3 (cdmlib): cdmLight: fix missing name of toRelationships
Katja Luther
02:51 PM Revision ec9e7738 (cdm-dataportal): further hamonization of annotations_and_sources handling - mo...
Andreas Kohlbecker
02:42 PM Revision d86468e9 (cdm-dataportal): further hamonization of annotations_and_sources handling
Andreas Kohlbecker
02:41 PM bug #4964 (Duplicate): footnotes for taxonRelationship sources and annotations should be rendered...
closing as duplicate of #8543 Andreas Kohlbecker
11:35 AM Revision c89e7b7c (taxeditor): test remove junit from taxeditor.test
Katja Luther
11:04 AM Revision 8662bcde (cdm-vaadin): ref #9105 extending init strategy for checkEmpty() in model clas...
Andreas Kohlbecker
10:17 AM task #9189 (Resolved): Move datasource view to taxeditor.local
Katja Luther
10:15 AM Revision e0674b99 (taxeditor): ref #9190: rename webapp to local
Katja Luther
10:03 AM task #9233 (In Progress): provide feedback mechanism for euro+med
Hallo,
ich habe mich daran gemacht ein Konzept für die Umsetzung der Feedbackfunktion zu entwickeln.
Wenn man d...
Andreas Kohlbecker
09:52 AM Revision aaa130b3 (taxeditor): ref #9190: rename webapp to local
Katja Luther

09/24/2020

06:58 PM Revision 8229b260 (cdm-dataportal): ref #9233 providing hook implementation to integrate modal_fo...
Andreas Kohlbecker
06:56 PM task #9233: provide feedback mechanism for euro+med

Eine weniger störende, aber wohl auch effektive Maßnahme ist es, nur eine „I am no robot“ checkbox zu haben – d...
Andreas Kohlbecker
06:51 PM task #9233 (In Progress): provide feedback mechanism for euro+med
Requirements:
* allow feedback for annonymous users per cdm content page
* store feedback in db
* feedback refer...
Andreas Kohlbecker
06:25 PM feature request #9232: Name page: taxon section improvement
Hallo,

bezüglich „Taxon for this name”:
die derzeitige Anzeige (wie auf http://cichorieae.e-taxonomy.net/p...
Andreas Kohlbecker
06:22 PM feature request #9232 (New): Name page: taxon section improvement
copied from #8391
A) distinguish taxa which are directly associated to the name and those only using the same simp...
Andreas Kohlbecker
06:17 PM feature request #8304: Name page redirects to according taxon depending on query parameter
Hi Andreas, I am voting to close this issue as it is 1. fully solved and secondly the solution is not preventing us f... Andreas Kohlbecker
06:03 PM feature request #8108 (Closed): Name page shows complete name information (I)
According my interpretation of the last comment to this ticket I am closing it now.
Please reopen if I am misinter...
Andreas Kohlbecker
05:28 PM task #9231: Create statistics for Euro+Med
Query for 2:
~~~ sql
-- EM Query Superareale
SELECT areaMarker, rankName, STATUS, n
FROM
(
SELECT 'All' AS...
Andreas Müller
05:22 PM task #9231: Create statistics for Euro+Med
Query for 1.
~~~sql
-- E+M Full Area

SELECT rankName, STATUS, n
FROM
(
SELECT 'All' A...
Andreas Müller
05:07 PM task #9231 (In Progress): Create statistics for Euro+Med
Generally absent taxa or taxa without distribution should not be included. Same for unpublished taxa and "valueless" ... Andreas Müller
05:02 PM Revision fef9465d (cdm-vaadin): ref #9124 fix altitude recommended measurement units issue in vaadin
Andreas Müller
03:36 PM bug #9124: Altitude feature should have [m] as measurement unit by default
The first implementatin of the update script had a serious bug as it filled the table DefinedTermBase_StatisticalMeas... Andreas Müller
03:30 PM Revision 892b82f3 (taxeditor): rename ICdmServerError
Andreas Müller
03:19 PM Revision c98ed132 (taxeditor): ref #9190 fix compile error in test for CdmServerInfo.getCdmServers()
Andreas Müller
03:11 PM Revision 724595b1 (taxeditor): ref #9124 fix taxeditor test H2
Andreas Müller
03:11 PM Revision 0bc9515f (taxeditor): cleanup
Andreas Müller
03:01 PM Revision 8878e1fa (cdmlib): ref #9124 fix incorrect Altituded recommended measurement unit update...
Andreas Müller
01:54 PM Revision 80528bff (cdmlib): cleanup
Andreas Müller
01:50 PM Revision aeea6b48 (taxeditor): ref #9190: continue working on extracting all local issues to an e...
Katja Luther
12:33 PM Revision 78009a08 (cdmlib): ref #9225 adapting TaxonGraphHibernateListener processor and test to ...
Andreas Kohlbecker
12:29 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
Similar problem to the already solved one with displayed unpublished names related to published names (#8328)
The ...
Wolf-Henning Kusber
10:28 AM Revision 02fcd573 (cdmlib): ref #9225 fix setNomenclaturalSource bidirectional setting
Andreas Müller

09/23/2020

02:56 PM Revision ac6ef9a3 (taxeditor): ref #9225 adapt Test H2 in taxeditor
Andreas Müller
12:14 PM Revision 3dcbcc9f (taxeditor): cleanup
Katja Luther
11:17 AM Revision 401e8678 (taxeditor): remove experimental remote package
Katja Luther

09/22/2020

07:38 PM task #9227 (Worksforme): corrected entry cannot be saved
Kind of Unit can be added in Vaadin,
if (1) this is the first step before
(2) editing other parts and (3) saving th...
Wolf-Henning Kusber
10:58 AM task #9227: corrected entry cannot be saved
![](picture360-1.png) Wolf-Henning Kusber
06:45 PM feature request #9224: openlayers map handles server error per layer and presents a user message
made available to production servers as HFX release 5.17.1.
Needs more testing though regarding error conditions ...
Andreas Kohlbecker
06:28 PM feature request #9224 (In Progress): openlayers map handles server error per layer and presents a...
Andreas Kohlbecker
06:41 PM Revision c163c10f (cdm-dataportal): Merge tag '5.17.1' into develop
5.17.1 Andreas Kohlbecker
06:41 PM Revision cfc80fd5 (cdm-dataportal): Merge branch 'hotfix/5.17.1'
Andreas Kohlbecker
06:41 PM Revision 30b0d98b (cdm-dataportal): ref #9224 preliminar implementation of map server error feedb...
Andreas Kohlbecker
06:36 PM Revision 9f2631d1 (cdm-dataportal): ref #9224 preliminar implementation of map server error feedb...
Andreas Kohlbecker
06:35 PM Revision 825d9f7a (cdm-dataportal): relabeling map server
Andreas Kohlbecker
06:26 PM bug #6356 (Resolved): taxontree sort order as in editor
Please confirm that the sort order is now as expected. Andreas Kohlbecker
06:25 PM bug #6356: taxontree sort order as in editor
The sort code in `cdm_taxontree_populate()` mentioned above is related to the no longer used special featured of the ... Andreas Kohlbecker
06:12 PM bug #6356 (In Progress): taxontree sort order as in editor
Andreas Kohlbecker
06:11 PM Revision af3fb709 (cdmlib): ref #6356 using TaxonNodeSortMode.RankAndAlphabeticalOrder as default...
Andreas Kohlbecker
05:01 PM Revision 4a8e796d (cdmlib): AutoPropertyInitializer with more type savety
Andreas Kohlbecker
04:52 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading...
tested as being fully functional Andreas Kohlbecker
04:52 PM feature request #9229 (Resolved): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loadi...
Applied in changeset commit:cdm-vaadin|84b030bfbe7c9c0df2b160149c23bb5add938b2a. Andreas Kohlbecker
02:43 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading...
due to the changes made in #6581 the setter for NomenclaturalStatus in Taxon Name checks for empty SingleSource entit... Andreas Kohlbecker
04:28 PM Revision a2e4821c (cdmlib): cleanup and improve data and docu for BeanInitializerIntegrationTest....
Andreas Müller
04:26 PM Revision 8e465f0c (cdmlib): cleanup
Andreas Müller
03:55 PM Revision 87913ce3 (cdmlib): ref #9225 fix AdvancedBeanInitializer test
Andreas Müller
02:46 PM Revision 84b030bf (cdm-vaadin): fix #9229 using NomenclaturalStatusDTO in the TaxonNameEditor
Andreas Kohlbecker
12:35 PM Revision 3c03428f (taxeditor): experimental fix for LinkageError related to javax.validation
Andreas Kohlbecker
12:35 PM Revision 2d909919 (cdmlib): ref #6581 , ref #9225 cleanup TaxonName from nomenclaturalSource hand...
Andreas Müller
12:33 PM Revision 9570db31 (cdmlib): cleanup
Andreas Müller
12:33 PM Revision 12411f3e (cdmlib): ref #9225 fix ValidationTest / 3rd Level duplicate validation for ta...
Andreas Müller

09/21/2020

04:58 PM Revision 3829682c (cdmlib): ref #9225 !! PRELIMINARY also ValidationTest
Andreas Müller
04:49 PM Revision 93cc59a0 (cdm-vaadin): ref #9225 adapt vaadin test data to new NomenclaturalSource mappi...
Andreas Müller
04:49 PM Revision adec36b1 (cdm-vaadin): cleanup
Andreas Müller
04:46 PM Revision 286f20a7 (cdmlib): ref #9225 !! PRELIMINARY ignore failing tests
Andreas Müller
04:45 PM Revision ee7148ab (cdmlib): cleanup
Andreas Müller
04:17 PM Revision 893b0a7c (cdmlib): ref #9225 revert direction of TaxonName.nomenclaturalSource -> Nomen...
Andreas Müller
03:11 PM Revision a23d2d0a (taxeditor): move string externalization
Katja Luther
01:12 PM Revision 8cd385e1 (taxeditor): add connect command to webapp
Katja Luther
12:43 PM Revision 74947d40 (taxeditor): cleanup
Katja Luther
12:23 PM Revision 821fe02d (taxeditor): create new branch webapp
Katja Luther
10:43 AM task #9228 (In Progress): Adaptations to allow editing Centaurea in Flora of Greece
It has been decided to edit Centaurea data in Flora of Greece. For making this possible a couple of issues need to be... Andreas Müller
10:33 AM task #9227: corrected entry cannot be saved
http://phycobank.org/7587 (Import of a 1999 published entry)See screen shot
In TaxEDITor the addition was possible...
Wolf-Henning Kusber
09:58 AM task #9227 (Feedback): corrected entry cannot be saved
Could you try fix the type designation in the Taxonomic Editor by adding the missing "Kind of Unit" information? Andreas Kohlbecker

09/18/2020

10:01 AM Revision 500c500e (taxeditor): ref #9189: move datasource to webapp - adapt manifest files
Katja Luther
09:37 AM Revision b33b7c33 (taxeditor): ref #9189: move datasource to webapp - adapt manifest files
Katja Luther
09:29 AM Revision 8dde8e84 (taxeditor): ref #9189: move datasource to webapp - continue
Katja Luther

09/17/2020

05:08 PM task #9227 (Worksforme): corrected entry cannot be saved
Entry from 1999 is missing the mandatory entry Kind of Unit = Specimen.
Action: Add Editorial note "PhycoBank (17 ...
Wolf-Henning Kusber
03:12 PM Revision 139caafa (cdmlib): ref #6589 add ProtologMover (not yet ready)
Andreas Müller
03:12 PM Revision ce8b5e56 (cdmlib): cleanup
Andreas Müller
03:11 PM Revision d8798a32 (cdmlib): fix logging in StructuredDescriptionAggregationTest
Andreas Müller
03:10 PM feature request #6589 (In Progress): Handle protologue as original source with URI link
Andreas Müller
01:32 PM Revision 192243b3 (taxeditor): ref #9189: move datasource to webapp
Katja Luther

09/16/2020

03:09 PM Revision 5dd900d6 (cdmlib): adding more explanation to test assertion
Andreas Kohlbecker
09:58 AM Revision d27add60 (cdmlib): ref #9225 update cached model
Andreas Müller
 

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