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From 09/03/2020 to 10/02/2020

10/02/2020

09:39 PM Revision b34b4c6c (cdm-dataportal): ref #7685 adapting other tests to extendet test data
Andreas Kohlbecker
09:34 PM task #9231: Create statistics for Euro+Med
Zeitabhängigkeit:
~~~ sql
SELECT minYear, COUNT(*) AS n
FROM(
SELECT accId, accName.titleCache, MIN(Y) minY...
Andreas Müller
09:16 PM feature request #7685 (Closed): Add Selenium tests for specimen table in data portal
The test is fairly complete now.
Only tests for the indicator icons for DNA-sample and descriptive data are missin...
Andreas Kohlbecker
09:10 PM Revision 12178f01 (cdm-dataportal): ref #7685 testing for detail image in compressed specimen table
Andreas Kohlbecker
08:18 PM Revision 8c3d9651 (cdm-dataportal): ref #7685 test for compressed specimen table implemented, tes...
Andreas Kohlbecker
08:15 PM task #9187 (Duplicate): selenium test for specimen table view
duplicate of #7685 Andreas Kohlbecker
03:27 PM Revision 4d6b5667 (cdmlib): ref #9238 quick fix at least for the test data in reference_int Gleno...
Andreas Kohlbecker
03:26 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
this request http://int.e-taxonomy.eu/cdmserver/integration_reference/portal/occurrence/89d36e79-3e80-4468-986e-411ca... Andreas Kohlbecker
12:15 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by co...
Andreas Kohlbecker
12:14 PM Revision 292b1ebe (cdm-dataportal): ref #7599, ref #7599 specimen tree view: fixing bug and adapt...
Andreas Kohlbecker
11:55 AM Revision 7a2bc944 (cdm-dataportal): moving functions to other file
Andreas Kohlbecker
11:54 AM Revision 430fcb76 (cdm-dataportal): refactoring, cleaning up, and bug fixing related to specimen ...
Andreas Kohlbecker
11:17 AM feature request #7599: treeView for specimen data in dataportal
[Andreas Müller wrote:]
Hallo,
wenn ich es richtig verstehe bezieht sich das auf die Derivate, die unterhalb vo...
Andreas Kohlbecker
11:17 AM feature request #7599: treeView for specimen data in dataportal
Naja, nicht ganz. Es geht auch im Tree View darum, dass in einem Derivat Baum, der aus einer Mischprobe entsteht, nic... Andreas Kohlbecker
11:15 AM feature request #7599: treeView for specimen data in dataportal
Ah ok,
das Ausblenden/Verstecken bezog sich nur auf die Compressed Table, richtig?
VG
A.
Andreas Kohlbecker
11:15 AM feature request #7599: treeView for specimen data in dataportal
[Katja wrote:]
Hallo Andreas,
die Origin derivate sollten schon angezeigt werden, auch wenn sie keine Assozia...
Andreas Kohlbecker
11:14 AM feature request #7599: treeView for specimen data in dataportal
Hallo Katja,
ich habe noch eine weitere Frage.
Soweit ich das verstanden habe gilt auch folgender Anforderung: ...
Andreas Kohlbecker
09:20 AM bug #9237 (Closed): FeatureTree SortIndex updater creates wrong sortindex
mail NK:
ich beobachte jetzt schon seit einer Weile, dass sich die Reihenfolge der Features, die ich im TaxEditor ...
Katja Luther

10/01/2020

06:18 PM feature request #9209 (Feedback): name page, registration page: show annotations for names and fi...
The annotations looks good, and the indicees are placed correctly. Some cache issues in references are remaining, but... Wolf-Henning Kusber
05:49 PM feature request #9209 (Resolved): name page, registration page: show annotations for names and fi...
Hi Henning,
please review on the test server:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datap...
Andreas Kohlbecker
06:17 PM bug #8340 (Rejected): is accepted for Footnotes missing and with wrong index
no need for any action on this issue since we decided to remove "is accepted" completely, see #8339 Andreas Kohlbecker
06:05 PM Revision 0fec6c2b (cdm-dataportal): ref #9220 adapting link creation to new registration page URL...
Andreas Kohlbecker
05:46 PM bug #9236: stopping an instance breaks the centralized logging
Further test showed that some service endpoints in fact are broken in the situation described above. Andreas Kohlbecker
05:38 PM bug #9236 (New): stopping an instance breaks the centralized logging
since switching to centralized logging through logback MDC (#7085) the logging gets broken when an cdm-webapp instanc... Andreas Kohlbecker
05:29 PM bug #6287 (Duplicate): Rolling cdmserver.log file only contains entries from startup phase
this has been solved by #7085
Closing as duplicate
Andreas Kohlbecker
04:58 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
completed. Andreas Kohlbecker
04:36 PM Revision b6e9b53a (cdm-dataportal): ref #9220 adapting link creation to new registration page URL...
Andreas Kohlbecker
04:11 PM Revision 6d5ee807 (cdm-dataportal): ref #9235 fixing copy paste bug
Andreas Kohlbecker
02:31 PM Revision f513f3ca (cdm-dataportal): ref #9235 annotations and sources as class for better merging...
Andreas Kohlbecker
01:40 PM Revision 65f9e1dc (taxeditor): restructure language preferences - continue
Katja Luther
01:35 PM Revision 4b186567 (taxeditor): restructure language preferences
Katja Luther

09/30/2020

06:13 PM Revision c1eeed43 (cdm-dataportal): fixingbug in test page error handling
Andreas Kohlbecker
05:57 PM Revision 95ef7468 (cdm-dataportal): ref #9235 annotations and sources as class for better merging...
Andreas Kohlbecker

09/29/2020

11:26 PM task #9231: Create statistics for Euro+Med
"Family" Query 4:
~~~ sql
-- E+M Families

SELECT famName, rankName, STATUS, n
FROM
(
...
Andreas Müller
09:58 PM task #9231 (In Progress): Create statistics for Euro+Med
Query for 3:
~~~ sql
-- E+M Area statistics
SELECT areaSymbol, areaName, rankName, STATUS, n
FROM
(
SELEC...
Andreas Müller
06:04 PM Revision c3e93473 (cdm-dataportal): ref #9235 adapting test to meet real expectations
Andreas Kohlbecker
05:54 PM Revision 1b6afb58 (cdm-dataportal): ref #9209 adapting to test cases to new test data with more n...
Andreas Kohlbecker
05:50 PM Revision 890f6c24 (cdm-dataportal): ref #9209 separating footnote keys with comma - preliminary s...
Andreas Kohlbecker
05:49 PM Revision faf38e61 (cdm-dataportal): adding footnotes to name relations
Andreas Kohlbecker
04:51 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
This is in principle solved but there are now potential layout problems due to the problem described in #9235.
We...
Andreas Kohlbecker
03:29 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
Editorial note on the FieldUnit of the Holotype for *Paludistella asymmetrica* is already shown in the registration a... Andreas Kohlbecker
04:49 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
Currently footnote keys are created per cdm entity. When footnote keys are created for name and taxon they need to be... Andreas Kohlbecker
04:38 PM bug #6821 (Worksforme): footnote keys without trailing dot character
Andreas Kohlbecker
03:21 PM Revision 7d926e4b (cdm-dataportal): testcase expecting either map text or map error text
Andreas Kohlbecker
02:58 PM Revision cd09cee6 (cdm-dataportal): ref #9209 removing last references to decomissioned function ...
- render_taxon_or_name() : replacing by
- compose_list_of_taxa() : refactoring duplicate code & using
to suppres...
Andreas Kohlbecker
12:22 PM bug #8567 (Worksforme): registration search results: cdm_compose_url(): missing pathParameter 0 f...
this has been fixed already in an other context Andreas Kohlbecker
12:19 PM feature request #8983: authors and team in combobox better distinguishable
evaluation need to be done rather soon so that we know how to deal with his issue for the **Phycobank ready for submi... Andreas Kohlbecker
12:00 PM bug #8579 (Worksforme): Search in PhycoBank Portal with error
this has been fixed in the context of something else. Andreas Kohlbecker
08:31 AM Revision aab5bbc7 (taxeditor): revert last commit
Katja Luther

09/28/2020

05:58 PM Revision fde231f8 (cdm-dataportal): ref #9209 removing obsoltete calls to decomissioned function ...
Andreas Kohlbecker
05:57 PM Revision af9ab4d7 (cdm-dataportal): typo and comment formatting
Andreas Kohlbecker
05:25 PM Revision 9b3f8ce8 (cdm-dataportal): ref #9209 intoducing default configuration for annotation_and...
Andreas Kohlbecker
04:55 PM Revision a764d3d1 (cdm-dataportal): ref #9234 ignoring test temporariliy
Andreas Kohlbecker
04:54 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by co...
casued by this code
~~~php
function compose_cdm_specimen_or_observation_tree_entry() {
...
...
Andreas Kohlbecker
03:43 PM Revision 69303661 (cdm-dataportal): using annotationsAndSourceConfig managed through RenderHints ...
Andreas Kohlbecker
03:42 PM Revision ebf17187 (cdm-dataportal): code cleaning of static access
Andreas Kohlbecker
03:42 PM Revision 5782f8dd (cdm-dataportal): adaping test element to modified render path
Andreas Kohlbecker
02:44 PM bug #8547 (Resolved): Default type of a newly created inReference should depend on the type of th...
The default type of the newly created inReference depends of the reference now. Please review.
Updated the title.
Katja Luther
02:40 PM Revision 2d07da9a (taxeditor): ref #8547: default type of inreference depending on ref type
Katja Luther
01:46 PM Revision 057ac9cf (cdm-dataportal): removing debug code
Andreas Kohlbecker
01:14 PM Revision d52836e7 (cdm-dataportal): improving documentation
Andreas Kohlbecker
12:54 PM Revision e97c6535 (cdm-dataportal): RenderHints can store global annotationsAndSourceConfig
Andreas Kohlbecker
12:53 PM bug #8874: move taxon is reverted when taxon is edited afterwards
this should be fixed. please review. Katja Luther
12:53 PM Revision 136d38e9 (taxeditor): ref #8874: add taxonnode to getUpdatedTaxon
Katja Luther
12:15 PM Revision a4eeef88 (cdm-dataportal): moving functions for handling annotations and sources to foot...
Andreas Kohlbecker
12:01 PM Revision dc342fe0 (cdm-dataportal): ref #9209 fixing footnote order in registration page and adap...
Andreas Kohlbecker
11:45 AM bug #8846 (Worksforme): Correctly parsed nomenclatural reference uncorrectly saved when taxon has...
This seems to be fixed, could not reproduce this problem anymore. Katja Luther

09/25/2020

04:48 PM Revision 7e3f68ec (cdm-dataportal): ref #9209 renabling previously comitted fix for missing name ...
Andreas Kohlbecker
04:38 PM Revision 1d191032 (cdm-dataportal): further claning up and harmonization of annotations_and_sourc...
Andreas Kohlbecker
04:27 PM Revision 6743dd7f (cdm-dataportal): better converstion from drupal settings to handle_annotations...
Andreas Kohlbecker
04:06 PM Revision f4ac05a8 (cdm-dataportal): moving function annotations_and_sources_config function
Andreas Kohlbecker
03:16 PM Revision f34df40f (cdm-dataportal): disabling erroneoulsy committed code
Andreas Kohlbecker
03:03 PM Revision bde9a2a3 (cdmlib): cdmLight: fix missing name of toRelationships
Katja Luther
02:51 PM Revision ec9e7738 (cdm-dataportal): further hamonization of annotations_and_sources handling - mo...
Andreas Kohlbecker
02:42 PM Revision d86468e9 (cdm-dataportal): further hamonization of annotations_and_sources handling
Andreas Kohlbecker
02:41 PM bug #4964 (Duplicate): footnotes for taxonRelationship sources and annotations should be rendered...
closing as duplicate of #8543 Andreas Kohlbecker
11:35 AM Revision c89e7b7c (taxeditor): test remove junit from taxeditor.test
Katja Luther
11:04 AM Revision 8662bcde (cdm-vaadin): ref #9105 extending init strategy for checkEmpty() in model clas...
Andreas Kohlbecker
10:17 AM task #9189 (Resolved): Move datasource view to taxeditor.local
Katja Luther
10:15 AM Revision e0674b99 (taxeditor): ref #9190: rename webapp to local
Katja Luther
10:03 AM task #9233 (In Progress): provide feedback mechanism for euro+med
Hallo,
ich habe mich daran gemacht ein Konzept für die Umsetzung der Feedbackfunktion zu entwickeln.
Wenn man d...
Andreas Kohlbecker
09:52 AM Revision aaa130b3 (taxeditor): ref #9190: rename webapp to local
Katja Luther

09/24/2020

06:58 PM Revision 8229b260 (cdm-dataportal): ref #9233 providing hook implementation to integrate modal_fo...
Andreas Kohlbecker
06:56 PM task #9233: provide feedback mechanism for euro+med

Eine weniger störende, aber wohl auch effektive Maßnahme ist es, nur eine „I am no robot“ checkbox zu haben – d...
Andreas Kohlbecker
06:51 PM task #9233 (In Progress): provide feedback mechanism for euro+med
Requirements:
* allow feedback for annonymous users per cdm content page
* store feedback in db
* feedback refer...
Andreas Kohlbecker
06:25 PM feature request #9232: Name page: taxon section improvement
Hallo,

bezüglich „Taxon for this name”:
die derzeitige Anzeige (wie auf http://cichorieae.e-taxonomy.net/p...
Andreas Kohlbecker
06:22 PM feature request #9232 (New): Name page: taxon section improvement
copied from #8391
A) distinguish taxa which are directly associated to the name and those only using the same simp...
Andreas Kohlbecker
06:17 PM feature request #8304: Name page redirects to according taxon depending on query parameter
Hi Andreas, I am voting to close this issue as it is 1. fully solved and secondly the solution is not preventing us f... Andreas Kohlbecker
06:03 PM feature request #8108 (Closed): Name page shows complete name information (I)
According my interpretation of the last comment to this ticket I am closing it now.
Please reopen if I am misinter...
Andreas Kohlbecker
05:28 PM task #9231: Create statistics for Euro+Med
Query for 2:
~~~ sql
-- EM Query Superareale
SELECT areaMarker, rankName, STATUS, n
FROM
(
SELECT 'All' AS...
Andreas Müller
05:22 PM task #9231: Create statistics for Euro+Med
Query for 1.
~~~sql
-- E+M Full Area

SELECT rankName, STATUS, n
FROM
(
SELECT 'All' A...
Andreas Müller
05:07 PM task #9231 (In Progress): Create statistics for Euro+Med
Generally absent taxa or taxa without distribution should not be included. Same for unpublished taxa and "valueless" ... Andreas Müller
05:02 PM Revision fef9465d (cdm-vaadin): ref #9124 fix altitude recommended measurement units issue in vaadin
Andreas Müller
03:36 PM bug #9124: Altitude feature should have [m] as measurement unit by default
The first implementatin of the update script had a serious bug as it filled the table DefinedTermBase_StatisticalMeas... Andreas Müller
03:30 PM Revision 892b82f3 (taxeditor): rename ICdmServerError
Andreas Müller
03:19 PM Revision c98ed132 (taxeditor): ref #9190 fix compile error in test for CdmServerInfo.getCdmServers()
Andreas Müller
03:11 PM Revision 724595b1 (taxeditor): ref #9124 fix taxeditor test H2
Andreas Müller
03:11 PM Revision 0bc9515f (taxeditor): cleanup
Andreas Müller
03:01 PM Revision 8878e1fa (cdmlib): ref #9124 fix incorrect Altituded recommended measurement unit update...
Andreas Müller
01:54 PM Revision 80528bff (cdmlib): cleanup
Andreas Müller
01:50 PM Revision aeea6b48 (taxeditor): ref #9190: continue working on extracting all local issues to an e...
Katja Luther
12:33 PM Revision 78009a08 (cdmlib): ref #9225 adapting TaxonGraphHibernateListener processor and test to ...
Andreas Kohlbecker
12:29 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
Similar problem to the already solved one with displayed unpublished names related to published names (#8328)
The ...
Wolf-Henning Kusber
10:28 AM Revision 02fcd573 (cdmlib): ref #9225 fix setNomenclaturalSource bidirectional setting
Andreas Müller

09/23/2020

02:56 PM Revision ac6ef9a3 (taxeditor): ref #9225 adapt Test H2 in taxeditor
Andreas Müller
12:14 PM Revision 3dcbcc9f (taxeditor): cleanup
Katja Luther
11:17 AM Revision 401e8678 (taxeditor): remove experimental remote package
Katja Luther

09/22/2020

07:38 PM task #9227 (Worksforme): corrected entry cannot be saved
Kind of Unit can be added in Vaadin,
if (1) this is the first step before
(2) editing other parts and (3) saving th...
Wolf-Henning Kusber
10:58 AM task #9227: corrected entry cannot be saved
![](picture360-1.png) Wolf-Henning Kusber
06:45 PM feature request #9224: openlayers map handles server error per layer and presents a user message
made available to production servers as HFX release 5.17.1.
Needs more testing though regarding error conditions ...
Andreas Kohlbecker
06:28 PM feature request #9224 (In Progress): openlayers map handles server error per layer and presents a...
Andreas Kohlbecker
06:41 PM Revision c163c10f (cdm-dataportal): Merge tag '5.17.1' into develop
5.17.1 Andreas Kohlbecker
06:41 PM Revision cfc80fd5 (cdm-dataportal): Merge branch 'hotfix/5.17.1'
Andreas Kohlbecker
06:41 PM Revision 30b0d98b (cdm-dataportal): ref #9224 preliminar implementation of map server error feedb...
Andreas Kohlbecker
06:36 PM Revision 9f2631d1 (cdm-dataportal): ref #9224 preliminar implementation of map server error feedb...
Andreas Kohlbecker
06:35 PM Revision 825d9f7a (cdm-dataportal): relabeling map server
Andreas Kohlbecker
06:26 PM bug #6356 (Resolved): taxontree sort order as in editor
Please confirm that the sort order is now as expected. Andreas Kohlbecker
06:25 PM bug #6356: taxontree sort order as in editor
The sort code in `cdm_taxontree_populate()` mentioned above is related to the no longer used special featured of the ... Andreas Kohlbecker
06:12 PM bug #6356 (In Progress): taxontree sort order as in editor
Andreas Kohlbecker
06:11 PM Revision af3fb709 (cdmlib): ref #6356 using TaxonNodeSortMode.RankAndAlphabeticalOrder as default...
Andreas Kohlbecker
05:01 PM Revision 4a8e796d (cdmlib): AutoPropertyInitializer with more type savety
Andreas Kohlbecker
04:52 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading...
tested as being fully functional Andreas Kohlbecker
04:52 PM feature request #9229 (Resolved): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loadi...
Applied in changeset commit:cdm-vaadin|84b030bfbe7c9c0df2b160149c23bb5add938b2a. Andreas Kohlbecker
02:43 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading...
due to the changes made in #6581 the setter for NomenclaturalStatus in Taxon Name checks for empty SingleSource entit... Andreas Kohlbecker
04:28 PM Revision a2e4821c (cdmlib): cleanup and improve data and docu for BeanInitializerIntegrationTest....
Andreas Müller
04:26 PM Revision 8e465f0c (cdmlib): cleanup
Andreas Müller
03:55 PM Revision 87913ce3 (cdmlib): ref #9225 fix AdvancedBeanInitializer test
Andreas Müller
02:46 PM Revision 84b030bf (cdm-vaadin): fix #9229 using NomenclaturalStatusDTO in the TaxonNameEditor
Andreas Kohlbecker
12:35 PM Revision 3c03428f (taxeditor): experimental fix for LinkageError related to javax.validation
Andreas Kohlbecker
12:35 PM Revision 2d909919 (cdmlib): ref #6581 , ref #9225 cleanup TaxonName from nomenclaturalSource hand...
Andreas Müller
12:33 PM Revision 9570db31 (cdmlib): cleanup
Andreas Müller
12:33 PM Revision 12411f3e (cdmlib): ref #9225 fix ValidationTest / 3rd Level duplicate validation for ta...
Andreas Müller

09/21/2020

04:58 PM Revision 3829682c (cdmlib): ref #9225 !! PRELIMINARY also ValidationTest
Andreas Müller
04:49 PM Revision 93cc59a0 (cdm-vaadin): ref #9225 adapt vaadin test data to new NomenclaturalSource mappi...
Andreas Müller
04:49 PM Revision adec36b1 (cdm-vaadin): cleanup
Andreas Müller
04:46 PM Revision 286f20a7 (cdmlib): ref #9225 !! PRELIMINARY ignore failing tests
Andreas Müller
04:45 PM Revision ee7148ab (cdmlib): cleanup
Andreas Müller
04:17 PM Revision 893b0a7c (cdmlib): ref #9225 revert direction of TaxonName.nomenclaturalSource -> Nomen...
Andreas Müller
03:11 PM Revision a23d2d0a (taxeditor): move string externalization
Katja Luther
01:12 PM Revision 8cd385e1 (taxeditor): add connect command to webapp
Katja Luther
12:43 PM Revision 74947d40 (taxeditor): cleanup
Katja Luther
12:23 PM Revision 821fe02d (taxeditor): create new branch webapp
Katja Luther
10:43 AM task #9228 (In Progress): Adaptations to allow editing Centaurea in Flora of Greece
It has been decided to edit Centaurea data in Flora of Greece. For making this possible a couple of issues need to be... Andreas Müller
10:33 AM task #9227: corrected entry cannot be saved
http://phycobank.org/7587 (Import of a 1999 published entry)See screen shot
In TaxEDITor the addition was possible...
Wolf-Henning Kusber
09:58 AM task #9227 (Feedback): corrected entry cannot be saved
Could you try fix the type designation in the Taxonomic Editor by adding the missing "Kind of Unit" information? Andreas Kohlbecker

09/18/2020

10:01 AM Revision 500c500e (taxeditor): ref #9189: move datasource to webapp - adapt manifest files
Katja Luther
09:37 AM Revision b33b7c33 (taxeditor): ref #9189: move datasource to webapp - adapt manifest files
Katja Luther
09:29 AM Revision 8dde8e84 (taxeditor): ref #9189: move datasource to webapp - continue
Katja Luther

09/17/2020

05:08 PM task #9227 (Worksforme): corrected entry cannot be saved
Entry from 1999 is missing the mandatory entry Kind of Unit = Specimen.
Action: Add Editorial note "PhycoBank (17 ...
Wolf-Henning Kusber
03:12 PM Revision 139caafa (cdmlib): ref #6589 add ProtologMover (not yet ready)
Andreas Müller
03:12 PM Revision ce8b5e56 (cdmlib): cleanup
Andreas Müller
03:11 PM Revision d8798a32 (cdmlib): fix logging in StructuredDescriptionAggregationTest
Andreas Müller
03:10 PM feature request #6589 (In Progress): Handle protologue as original source with URI link
Andreas Müller
01:32 PM Revision 192243b3 (taxeditor): ref #9189: move datasource to webapp
Katja Luther

09/16/2020

03:09 PM Revision 5dd900d6 (cdmlib): adding more explanation to test assertion
Andreas Kohlbecker
09:58 AM Revision d27add60 (cdmlib): ref #9225 update cached model
Andreas Müller

09/15/2020

10:24 PM bug #9223 (Feedback): make changes of nomenclatural references detectable again in TaxonGraphBefo...
Andreas Kohlbecker
10:24 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransacti...
Solved, and can be closed.
@Andreas Müller: can you think of a situation which is not yet covered by the [new imp...
Andreas Kohlbecker
10:21 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBefo...
Applied in changeset commit:cdmlib|16b01d149133e36d735b05203a5b26d701a97d93. Andreas Kohlbecker
10:02 AM bug #9223 (In Progress): make changes of nomenclatural references detectable again in TaxonGraphB...
we decided to implement b) . This has been done in #9225 so we can continue here now. Andreas Müller
10:21 PM Revision 16b01d14 (cdmlib): fix #9223 TaxonGraphBeforeTransactionCompleteProcess using Noemclatur...
Andreas Kohlbecker
04:44 PM feature request #9226 (Duplicate): DisabledException should be caught
This is a duplicate for #8944 Andreas Müller
02:35 PM feature request #9226 (Duplicate): DisabledException should be caught
When a disabled user tries to connect to a cdm instance the DisabledException is thrown, this exception should be cau... Katja Luther
11:18 AM Revision f5d9192a (taxeditor): ref #9225: adapt editor to new NomenclaturalCource
Katja Luther
11:03 AM Revision 2c6b7b29 (cdmlib): Revert "temporarily unignore failing test"
This reverts commit e488332815bad4f7e3de2844f22cf8e36b82314c. Andreas Müller
11:02 AM Revision e4883328 (cdmlib): temporarily unignore failing test
Andreas Müller
10:48 AM feature request #4383: multiple issues with de-duplication of references in bibliography
I think we should reasses the priority of this ticket as it is reported from time to time Andreas Müller
10:46 AM feature request #4383: multiple issues with de-duplication of references in bibliography
Same problem reported by Sophia:
mir ist gerade aufgefallen dass im Portal der Flora Cuba die Referenzen, die bei ...
Andreas Müller
10:28 AM Revision 79deca9c (taxeditor): avoid NPE in taxonnodedetail element
Katja Luther
10:21 AM Revision 05767456 (taxeditor): cleanup navigation fragment
Katja Luther
10:01 AM feature request #9225 (In Progress): Make TaxonName.nomenclaturalSource a new DescriptionElementS...
This is implemented but there are still tests failing in vaading which seems to be related to this change. Andreas Müller
09:33 AM Revision 19deb7da (cdmlib): ref #9225 implement NomenclaturalSource (cleanup and update script)
Andreas Müller
09:25 AM Revision 7c1e42bf (cdmlib): cleanup
Andreas Müller
09:23 AM Revision 2dc2379c (cdmlib): deprecate printDataSetWithNull
Andreas Müller

09/14/2020

12:31 AM Revision 7793d2a5 (cdm-vaadin): cleanup
Andreas Müller
12:30 AM Revision 9d33a6ec (cdm-vaadin): ref #9225 adapt vaadin test data to NomenclaturalSource
Andreas Müller
11:03 PM Revision 50c1d6f4 (cdmlib): cleanup
Andreas Müller
11:03 PM Revision f694f9a2 (cdmlib): ref #9225 implement NomenclaturalSource
Andreas Müller
11:03 PM Revision 3a5f3569 (cdmlib): cleanup
Andreas Müller
11:03 PM Revision cdbbcaaf (cdmlib): ref #6581 add listener to TaxonName.nomenclaturalSource (cont.)
Andreas Müller
11:03 PM Revision fb36cce9 (cdmlib): ref #3547 remove created and updated in CdmEntityDaoBaseTest
Andreas Müller
11:03 PM Revision 8def7553 (cdmlib): cleanup
Andreas Müller
11:02 PM Revision 9e4028e0 (cdmlib): ref #6581 add listener to TaxonName.nomenclaturalSource
Andreas Müller
10:39 PM feature request #9225 (Closed): Make TaxonName.nomenclaturalSource a new DescriptionElementSource...
copied from #6581 and #9223
This is required for nomenclatural (detail) reference state change handling
Andreas Müller
03:25 PM bug #9143 (New): Distribution data sources are missing if multiple distributions exist
Andreas Müller
01:08 PM feature request #9224 (Closed): openlayers map handles server error per layer and presents a user...
in `openlayers_layers.js` error handlers need to be implemented that allow for presenting user messages in case of se... Andreas Kohlbecker
08:38 AM Revision 4ea4c60e (cdm-dataportal): additional map server url http://geocatalogue.africamuseum.be...
Andreas Kohlbecker

09/11/2020

05:57 PM bug #9223 (Feedback): make changes of nomenclatural references detectable again in TaxonGraphBefo...
Update!
d) und c) scheiden aus denn bei einem SessionFlush, ohne saveOrUpdate(taxonName) wird der TaxonGraphBefore...
Andreas Kohlbecker
05:57 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransacti...
Hallo,
die sicherste und einfachste Lösung a) wäre eine neue DescriptionSource zu erzeugen wenn sich die citation ...
Andreas Kohlbecker
05:56 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransacti...
Hallo Andreas
die Umstellung auf Single-Source-Referenzen bei TaxonName verträgt sich mit dem TaxonGraphBeforeTran...
Andreas Kohlbecker
05:53 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBefo...
due to the model modifications made for #6581 the `TaxonGraphHibernateListenerTest.testChangeNomRef()` fails since th... Andreas Kohlbecker
04:19 PM Revision a38340e1 (cdmlib): ref #6581 fixing means to get bean property
Andreas Kohlbecker
01:22 PM task #7862 (Closed): improve documentation on TaxonGraphHibernateListener and related classes
Andreas Kohlbecker
01:22 PM task #7862 (Resolved): improve documentation on TaxonGraphHibernateListener and related classes
Applied in changeset commit:cdmlib|a38e2585039171f028d1ca790949860b74f852be. Andreas Kohlbecker
01:22 PM Revision a38e2585 (cdmlib): fix #7862 full documentation on TaxonGraphHibernateListener, TaxonGra...
Andreas Kohlbecker
11:57 AM Revision 93f3d033 (cdm-dataportal): ref #9034 removing preliminar life span code with extensions
Andreas Kohlbecker

09/10/2020

05:31 PM Revision dfb24d50 (cdm-dataportal): improving message and fixing invalid medthod name in calling ...
Andreas Kohlbecker
02:15 PM Revision aa8405de (cdmlib): cleanup
Andreas Müller
02:14 PM Revision e7eb9f3d (cdmlib): ref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.x...
Andreas Müller
02:13 PM Revision d39d9fcd (cdmlib): ref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml
Andreas Müller
02:13 PM Revision d1dade1e (cdm-vaadin): ref #9105 extending init strategy for checkEmpty() in model classes
Andreas Kohlbecker
02:07 PM Revision 002ce68d (cdm-dataportal): name page 'Taxa for this name' title also in singular form
Andreas Kohlbecker
01:26 PM Revision 53cc93c6 (cdmlib): cleanup and some java doc
Andreas Müller
12:50 PM Revision cbd1fe7a (cdm-vaadin): ref #6581 fixing erroneously changes DTP field name
Andreas Kohlbecker
11:09 AM Revision 5a5c5045 (cdm-dataportal): page health check for Drupal errors and warnings configurable
Andreas Kohlbecker
09:37 AM Revision 66cd127d (cdmlib): cleanup
Andreas Müller
09:31 AM Revision 7058de02 (cdm-vaadin): ref #6581 adapt vaadin to new nomenclatural source handling
Andreas Müller
08:34 AM Revision 98505c5e (cdmlib): ref #6581 ref #9222 fixing NPE in TaxonPortalController
Andreas Kohlbecker
08:24 AM Revision 96847705 (cdmlib): ref #6581 ref #9222 fixing init strategy in TaxonPortalController
Andreas Kohlbecker

09/09/2020

10:24 PM Revision 9f76b617 (cdmlib): fix TaxonName.getCitationString()
Andreas Müller
10:24 PM Revision f132fe1d (cdmlib): cleanup
Andreas Müller
06:16 PM Revision 84d9a25e (cdmlib): ref #6581 ref #9222 adding PolytomousKeyNodePortalController and miss...
Andreas Kohlbecker
06:13 PM Revision a9a297f6 (cdm-dataportal): ref #9222 fixing bug in polytomous key rendering related to s...
Andreas Kohlbecker
04:42 PM Revision e9c8c928 (cdmlib): remove method rectifyNameCacheStrategy and some cleanup
Andreas Müller
04:37 PM Revision 6d399b0d (cdmlib): cleanup
Andreas Müller
03:45 PM Revision ee0b6690 (cdmlib): fix return type of clone methods in CdmBase classes and some cleanup
Andreas Müller
02:31 PM Revision 8850b8e7 (cdmlib): cleanup
Andreas Müller
02:31 PM Revision 19d5d18b (cdmlib): ref #9204 adapt all spring application context xml configuration file...
Andreas Müller
01:47 PM Revision afb1f504 (cdm-dataportal): ref #9222 adapting tests to more data being visible in the sp...
Andreas Kohlbecker
12:45 PM Revision 7d19ee1c (cdmlib): ref #9222 adapting dataportal and tests to single sourced classes - t...
Andreas Kohlbecker
12:44 PM Revision 46a93d1e (cdm-dataportal): ref #9222 adapting specimens and typedesignations to single s...
Andreas Kohlbecker
11:05 AM Revision f02e26e1 (cdm-dataportal): adapting remainig tests to new date formating
Andreas Kohlbecker
10:12 AM Revision 6679207a (cdm-dataportal): ref #9222 adapting dataportal and tests to single sourced cla...
Andreas Kohlbecker
10:07 AM Revision 4dee6d44 (cdmlib): ref #9222 ref #6581 adapting web services to single sourced classes
Andreas Kohlbecker

09/08/2020

05:05 PM task #9222 (Closed): Adapt dataportal to switch to originalSource for remaining single sourced cl...
this affects all single sources classes (#6581) except for TaxonNode which has been handled earlier already Andreas Kohlbecker
02:28 PM Revision ad6ad4c6 (cdm-dataportal): cleaning unused variable
Andreas Kohlbecker
02:27 PM Revision 43a2f169 (cdm-dataportal): ref #9087 restoring erroneously removed error check
Andreas Kohlbecker
09:55 AM feature request #9221: New preferences for 'project metadata'
I think the storing location still needs to be discussed. It could also be a new CDM table "project" or maybe CdmMeta... Andreas Müller
09:13 AM feature request #9221 (New): New preferences for 'project metadata'
For cdmLight/GfBio and DwC-A we need some meta data of the project, to avoid to enter them for each export we should ... Katja Luther
09:10 AM feature request #9110: Add additional informations to metadata table of cdmLight
Andreas Müller wrote:
> Some of these new data seem to be very GfBio specific so I wonder if we should have them in ...
Katja Luther

09/07/2020

12:45 AM Revision df19b88a (cdmlib-apps): update BgbmInstancesUpdater to current state
Andreas Müller
10:38 PM Revision e29ed013 (cdmlib): adapt TestModelUpdate
Andreas Müller
10:37 PM Revision c754177e (cdmlib): ref #6581 fix detail handling with single quote character
Andreas Müller
10:34 PM Revision cc651bea (cdmlib): ref #9124 skip altitude adder if altitude feature does not yet exist
Andreas Müller
10:32 PM Revision e830b16f (cdmlib): cleanup
Andreas Müller
06:37 PM Revision 5a407e53 (cdmlib-apps): update image imports to new apache commons imaging
Andreas Müller
06:19 PM Revision 01146fd8 (cdmlib-apps): cleanup
Andreas Müller
06:11 PM Revision aea2f0ea (cdm-dataportal): ref #9220 registratin page using query param 'identifier' to ...
Andreas Kohlbecker
05:52 PM Revision ec8b3c45 (cdmlib): fix #8964 update reverse label for later homonym (update script)
Andreas Müller
05:52 PM Revision 5a3638fe (cdmlib): fix #8326 update label for blocking name and isonym relationships (up...
Andreas Müller
05:52 PM Revision d7bb67dd (cdmlib): fix #9124 add meter to altitude (update script)
Andreas Müller
05:52 PM Revision 662d3c82 (cdmlib): fix #9120 update flowering period as supports temporal data (update s...
Andreas Müller
05:52 PM Revision 91f64efa (cdmlib): fix #9121 add abbrevLabel and symbol to features flowering and fruiti...
Andreas Müller
05:52 PM Revision 062d3624 (cdmlib): fix #9062 remove StatisticalMeasurementValue.value_old
Andreas Müller
05:52 PM Revision 2c2fb8fe (cdmlib): fix #9082 fix empty partials_start and partials_end handling
Andreas Müller
05:52 PM Revision 3bcb7fc8 (cdmlib): fix #9094 update TaxonNode.source from IdentifiableSource to Descript...
Andreas Müller
05:52 PM Revision f800c017 (cdmlib): ref #6581 move references to sources for NomenclaturalStatus, NameRel...
Andreas Müller
05:52 PM Revision 5b113fbe (cdmlib): add base functionality for model update 5.15.2 -> 5.18.0
Andreas Müller
05:52 PM Revision 5b34cfd9 (cdmlib): ref #9121 and ref #9124 add abbreviations to feature and add measurem...
Andreas Müller
05:52 PM Revision e68e45bd (cdmlib): fix DefaultTermInitializerTest in Suite
Andreas Müller
05:25 PM bug #9220 (Resolved): adapt dataportal to /registrationDTO now using identifier as query paramet...
Applied in changeset commit:cdm-dataportal|bd15166b63c77d27c4d30e3d9b881fc6f776b9a2. Andreas Kohlbecker
04:52 PM bug #9220 (Closed): adapt dataportal to /registrationDTO now using identifier as query parameter...
A)
the registration page must be secured against [CVE-2007-0450](https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE...
Andreas Kohlbecker
05:25 PM Revision bd15166b (cdm-dataportal): fix #9220 dataportal adapted to registration controllers now ...
Andreas Kohlbecker
05:24 PM bug #9218 (Resolved): Change /registrationDTO/identifier/... signatures to use query parameters i...
Applied in changeset commit:cdmlib|ab4c6c1209ce78cbcce640a6dcbce1e4b1241195. Andreas Kohlbecker
04:14 PM bug #9218 (Closed): Change /registrationDTO/identifier/... signatures to use query parameters ins...
Using slashes, double slashes, back slashes in URLs has security implications (see [CVE-2007-0450](https://cve.mitre.... Andreas Kohlbecker
05:24 PM Revision ab4c6c12 (cdmlib): fix #9218 RegistrationController and RegistrationDTOController confor...
Andreas Kohlbecker
05:18 PM feature request #9110 (Feedback): Add additional informations to metadata table of cdmLight
Some of these new data seem to be very GfBio specific so I wonder if we should have them in the ordinary workflow or ... Andreas Müller
04:49 PM task #9219 (New): Revert: requests with %2F in URL are rejected by apache
remove the `AllowEncodedSlashes On` made for #7563 from apache configurations:
~~~
#
# NOTE: AllowEncodedSla...
Andreas Kohlbecker
03:24 PM Revision b68da265 (cdmlib): ref #9103 adding missing init strategy element to TaxonController
Andreas Kohlbecker
02:13 PM bug #9214: It is not possible to create a new schema in h2 database
Andreas Kohlbecker wrote:
> From reading the stack trace it seems as if you attempted to create the db from within t...
Katja Luther
01:00 PM bug #9214 (New): It is not possible to create a new schema in h2 database
Andreas Müller
12:59 PM bug #9214: It is not possible to create a new schema in h2 database
Andreas Kohlbecker wrote:
> From reading the stack trace it seems as if you attempted to create the db from within t...
Andreas Müller
09:52 AM bug #9214 (Feedback): It is not possible to create a new schema in h2 database
From reading the stack trace it seems as if you attempted to create the db from within the taxeditor datasources view... Andreas Kohlbecker
02:01 PM bug #9217 (New): swagger-ui slow in Cromium and freezes Firefox
Firefox can no longer render the swagger-ui due to massive performance problems, the Chromium browser succeeds render... Andreas Kohlbecker
01:42 PM feature request #9216 (New): Derivate tree view should merge branches to multiple root elements i...
Note: The root of non-cyclic directed graph of derivation events can either be a FieldUnit or a DerivedUnit
The fo...
Andreas Kohlbecker
01:31 PM feature request #7704: Dataportal specimen table should be able to show DerivedUnits without a Fi...
We discussed this topic in the EDIT standup today ... updating the ticket description with the outcome. Andreas Kohlbecker

09/04/2020

03:45 PM Revision 43cd5dcc (cdmlib): cleanup
Andreas Müller

09/03/2020

01:58 PM Revision f4935a73 (cdmlib): avoid multiple representation exception for source
Katja Luther
01:55 PM bug #9215: Drop down for empty rank does not work
please review Katja Luther
01:54 PM bug #9215 (Resolved): Drop down for empty rank does not work
Applied in changeset commit:taxeditor|cdd296d810fa3b1873c2442fadd65903f139b747. Katja Luther
01:48 PM bug #9215 (Closed): Drop down for empty rank does not work
For an empty rank the combo box does not keep open to select a rank, it is necessary to enter a character to get a se... Katja Luther
01:54 PM Revision cdd296d8 (taxeditor): fix #9215: fire property change event only when something is selec...
Katja Luther
12:55 PM bug #8964: Improve label for homonym relationships
The reverse labels were still missing the change. This will come with v5.18 Andreas Müller
12:39 PM bug #8326 (Resolved): update labels for is blocking name and is isonym
Andreas Müller
12:02 PM bug #9124 (Resolved): Altitude feature should have [m] as measurement unit by default
Andreas Müller
10:06 AM bug #9214 (New): It is not possible to create a new schema in h2 database
Trying to create a schema in an emtpy h2 database results in an exception:
~~~
client error time : 2020-09-03...
Katja Luther
09:26 AM task #9120 (Resolved): Update script for flowering period supports temporal data
Andreas Müller
06:35 AM Revision 616de8d6 (cdmlib): fix compile error in DefaultTermInitializerTest
Andreas Müller
06:29 AM Revision 49a38456 (cdmlib): close csv reader for TermLoader
Andreas Müller
06:29 AM Revision da93d83b (cdmlib): ref #9211 add TODO on Classification.source
Andreas Müller
06:29 AM Revision f9390be8 (cdmlib): cleanup
Andreas Müller
06:29 AM Revision 6364fc79 (cdmlib): revert ignore for EditGeoServiceTest
Andreas Müller
06:20 AM feature request #9121 (Resolved): Add abbreviations to Feature
Andreas Müller
 

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