Activity
From 09/01/2020 to 09/30/2020
09/30/2020
- 06:13 PM Revision c1eeed43 (cdm-dataportal): fixingbug in test page error handling
- 05:57 PM Revision 95ef7468 (cdm-dataportal): ref #9235 annotations and sources as class for better merging of footnote keys of multiple enities
09/29/2020
- 11:26 PM task #9231: Create statistics for Euro+Med
- "Family" Query 4:
~~~ sql
-- E+M Families
SELECT famName, rankName, STATUS, n
FROM
(
... - 09:58 PM task #9231 (In Progress): Create statistics for Euro+Med
- Query for 3:
~~~ sql
-- E+M Area statistics
SELECT areaSymbol, areaName, rankName, STATUS, n
FROM
(
SELEC... - 06:04 PM Revision c3e93473 (cdm-dataportal): ref #9235 adapting test to meet real expectations
- 05:54 PM Revision 1b6afb58 (cdm-dataportal): ref #9209 adapting to test cases to new test data with more name annotations and to the code which shows more annotations
- 05:50 PM Revision 890f6c24 (cdm-dataportal): ref #9209 separating footnote keys with comma - preliminary solution
- 05:49 PM Revision faf38e61 (cdm-dataportal): adding footnotes to name relations
- 04:51 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- This is in principle solved but there are now potential layout problems due to the problem described in #9235.
We... - 03:29 PM feature request #9209: name page, registration page: show annotations for names and fieldunits
- Editorial note on the FieldUnit of the Holotype for *Paludistella asymmetrica* is already shown in the registration a...
- 04:49 PM bug #9235 (Closed): Footnote key for multiple cdm entities need to be rendered together
- Currently footnote keys are created per cdm entity. When footnote keys are created for name and taxon they need to be...
- 04:38 PM bug #6821 (Worksforme): footnote keys without trailing dot character
- 03:21 PM Revision 7d926e4b (cdm-dataportal): testcase expecting either map text or map error text
- 02:58 PM Revision cd09cee6 (cdm-dataportal): ref #9209 removing last references to decomissioned function render_taxon_and_name_footnotes()
- - render_taxon_or_name() : replacing by
- compose_list_of_taxa() : refactoring duplicate code & using
to suppres... - 12:22 PM bug #8567 (Worksforme): registration search results: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
- this has been fixed already in an other context
- 12:19 PM feature request #8983: authors and team in combobox better distinguishable
- evaluation need to be done rather soon so that we know how to deal with his issue for the **Phycobank ready for submi...
- 12:00 PM bug #8579 (Worksforme): Search in PhycoBank Portal with error
- this has been fixed in the context of something else.
- 08:31 AM Revision aab5bbc7 (taxeditor): revert last commit
09/28/2020
- 05:58 PM Revision fde231f8 (cdm-dataportal): ref #9209 removing obsoltete calls to decomissioned function render_taxon_and_name_footnotes()
- 05:57 PM Revision af9ab4d7 (cdm-dataportal): typo and comment formatting
- 05:25 PM Revision 9b3f8ce8 (cdm-dataportal): ref #9209 intoducing default configuration for annotation_and_sources & preliminar solution for joining footnotes with separator
- 04:55 PM Revision a764d3d1 (cdm-dataportal): ref #9234 ignoring test temporariliy
- 04:54 PM bug #9234 (Closed): Error: Object of class stdClass could not be converted to string caused by compose_cdm_specimen_or_observation_tree_entry()
- casued by this code
~~~php
function compose_cdm_specimen_or_observation_tree_entry() {
...
... - 03:43 PM Revision 69303661 (cdm-dataportal): using annotationsAndSourceConfig managed through RenderHints in all situations
- 03:42 PM Revision ebf17187 (cdm-dataportal): code cleaning of static access
- 03:42 PM Revision 5782f8dd (cdm-dataportal): adaping test element to modified render path
- 02:44 PM bug #8547 (Resolved): Default type of a newly created inReference should depend on the type of the reference
- The default type of the newly created inReference depends of the reference now. Please review.
Updated the title. - 02:40 PM Revision 2d07da9a (taxeditor): ref #8547: default type of inreference depending on ref type
- 01:46 PM Revision 057ac9cf (cdm-dataportal): removing debug code
- 01:14 PM Revision d52836e7 (cdm-dataportal): improving documentation
- 12:54 PM Revision e97c6535 (cdm-dataportal): RenderHints can store global annotationsAndSourceConfig
- 12:53 PM bug #8874: move taxon is reverted when taxon is edited afterwards
- this should be fixed. please review.
- 12:53 PM Revision 136d38e9 (taxeditor): ref #8874: add taxonnode to getUpdatedTaxon
- 12:15 PM Revision a4eeef88 (cdm-dataportal): moving functions for handling annotations and sources to footnotes.inc
- 12:01 PM Revision dc342fe0 (cdm-dataportal): ref #9209 fixing footnote order in registration page and adapting tests to latest changes
- 11:45 AM bug #8846 (Worksforme): Correctly parsed nomenclatural reference uncorrectly saved when taxon has relationship
- This seems to be fixed, could not reproduce this problem anymore.
09/25/2020
- 04:48 PM Revision 7e3f68ec (cdm-dataportal): ref #9209 renabling previously comitted fix for missing name and taxon annotation and source footnotes
- 04:38 PM Revision 1d191032 (cdm-dataportal): further claning up and harmonization of annotations_and_sources code
- 04:27 PM Revision 6743dd7f (cdm-dataportal): better converstion from drupal settings to handle_annotations_and_sources_config
- 04:06 PM Revision f4ac05a8 (cdm-dataportal): moving function annotations_and_sources_config function
- 03:16 PM Revision f34df40f (cdm-dataportal): disabling erroneoulsy committed code
- 03:03 PM Revision bde9a2a3 (cdmlib): cdmLight: fix missing name of toRelationships
- 02:51 PM Revision ec9e7738 (cdm-dataportal): further hamonization of annotations_and_sources handling - moving methods and a new one
- 02:42 PM Revision d86468e9 (cdm-dataportal): further hamonization of annotations_and_sources handling
- 02:41 PM bug #4964 (Duplicate): footnotes for taxonRelationship sources and annotations should be rendered together
- closing as duplicate of #8543
- 11:35 AM Revision c89e7b7c (taxeditor): test remove junit from taxeditor.test
- 11:04 AM Revision 8662bcde (cdm-vaadin): ref #9105 extending init strategy for checkEmpty() in model classes - restoring lost chnaged from earlier
- 10:17 AM task #9189 (Resolved): Move datasource view to taxeditor.local
- 10:15 AM Revision e0674b99 (taxeditor): ref #9190: rename webapp to local
- 10:03 AM task #9233 (In Progress): Provide feedback mechanism for dataportals
- Hallo,
ich habe mich daran gemacht ein Konzept für die Umsetzung der Feedbackfunktion zu entwickeln.
Wenn man d... - 09:52 AM Revision aaa130b3 (taxeditor): ref #9190: rename webapp to local
09/24/2020
- 06:58 PM Revision 8229b260 (cdm-dataportal): ref #9233 providing hook implementation to integrate modal_form with simple_feedback
- 06:56 PM task #9233: Provide feedback mechanism for dataportals
Eine weniger störende, aber wohl auch effektive Maßnahme ist es, nur eine „I am no robot“ checkbox zu haben – d...- 06:51 PM task #9233 (New): Provide feedback mechanism for dataportals
- Requirements:
* allow feedback for annonymous users per cdm content page
* store feedback in db
* feedback refer... - 06:25 PM feature request #9232: Name page: taxon section improvement
- Hallo,
bezüglich „Taxon for this name”:
die derzeitige Anzeige (wie auf http://cichorieae.e-taxonomy.net/p... - 06:22 PM feature request #9232 (New): Name page: taxon section improvement
- copied from #8391
A) distinguish taxa which are directly associated to the name and those only using the same simp... - 06:17 PM feature request #8304: Name page redirects to according taxon depending on query parameter
- Hi Andreas, I am voting to close this issue as it is 1. fully solved and secondly the solution is not preventing us f...
- 06:03 PM feature request #8108 (Closed): Name page shows complete name information (I)
- According my interpretation of the last comment to this ticket I am closing it now.
Please reopen if I am misinter... - 05:28 PM task #9231: Create statistics for Euro+Med
- Query for 2:
~~~ sql
-- EM Query Superareale
SELECT areaMarker, rankName, STATUS, n
FROM
(
SELECT 'All' AS... - 05:22 PM task #9231: Create statistics for Euro+Med
- Query for 1.
~~~sql
-- E+M Full Area
SELECT rankName, STATUS, n
FROM
(
SELECT 'All' A... - 05:07 PM task #9231 (In Progress): Create statistics for Euro+Med
- Generally absent taxa or taxa without distribution should not be included. Same for unpublished taxa and "valueless" ...
- 05:02 PM Revision fef9465d (cdm-vaadin): ref #9124 fix altitude recommended measurement units issue in vaadin
- 03:36 PM bug #9124: Altitude feature should have [m] as measurement unit by default
- The first implementatin of the update script had a serious bug as it filled the table DefinedTermBase_StatisticalMeas...
- 03:30 PM Revision 892b82f3 (taxeditor): rename ICdmServerError
- 03:19 PM Revision c98ed132 (taxeditor): ref #9190 fix compile error in test for CdmServerInfo.getCdmServers()
- 03:11 PM Revision 724595b1 (taxeditor): ref #9124 fix taxeditor test H2
- 03:11 PM Revision 0bc9515f (taxeditor): cleanup
- 03:01 PM Revision 8878e1fa (cdmlib): ref #9124 fix incorrect Altituded recommended measurement unit update script
- 01:54 PM Revision 80528bff (cdmlib): cleanup
- 01:50 PM Revision aeea6b48 (taxeditor): ref #9190: continue working on extracting all local issues to an extra plugin
- 12:33 PM Revision 78009a08 (cdmlib): ref #9225 adapting TaxonGraphHibernateListener processor and test to changed mapping of TaxonName.nomenclaturalSource
- 12:29 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
- Similar problem to the already solved one with displayed unpublished names related to published names (#8328)
The ... - 10:28 AM Revision 02fcd573 (cdmlib): ref #9225 fix setNomenclaturalSource bidirectional setting
09/23/2020
- 02:56 PM Revision ac6ef9a3 (taxeditor): ref #9225 adapt Test H2 in taxeditor
- 12:14 PM Revision 3dcbcc9f (taxeditor): cleanup
- 11:17 AM Revision 401e8678 (taxeditor): remove experimental remote package
09/22/2020
- 07:38 PM task #9227 (Worksforme): corrected entry cannot be saved
- Kind of Unit can be added in Vaadin,
if (1) this is the first step before
(2) editing other parts and (3) saving th... - 10:58 AM task #9227: corrected entry cannot be saved
- 
- 06:45 PM feature request #9224: openlayers map handles server error per layer and presents a user message
- made available to production servers as HFX release 5.17.1.
Needs more testing though regarding error conditions ... - 06:28 PM feature request #9224 (In Progress): openlayers map handles server error per layer and presents a user message
- 06:41 PM Revision c163c10f (cdm-dataportal): Merge tag '5.17.1' into develop
- 5.17.1
- 06:41 PM Revision cfc80fd5 (cdm-dataportal): Merge branch 'hotfix/5.17.1'
- 06:41 PM Revision 30b0d98b (cdm-dataportal): ref #9224 preliminar implementation of map server error feedback to users
- 06:36 PM Revision 9f2631d1 (cdm-dataportal): ref #9224 preliminar implementation of map server error feedback to users
- 06:35 PM Revision 825d9f7a (cdm-dataportal): relabeling map server
- 06:26 PM bug #6356 (Resolved): taxontree sort order as in editor
- Please confirm that the sort order is now as expected.
- 06:25 PM bug #6356: taxontree sort order as in editor
- The sort code in `cdm_taxontree_populate()` mentioned above is related to the no longer used special featured of the ...
- 06:12 PM bug #6356 (In Progress): taxontree sort order as in editor
- 06:11 PM Revision af3fb709 (cdmlib): ref #6356 using TaxonNodeSortMode.RankAndAlphabeticalOrder as default in all contollers
- 05:01 PM Revision 4a8e796d (cdmlib): AutoPropertyInitializer with more type savety
- 04:52 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- tested as being fully functional
- 04:52 PM feature request #9229 (Resolved): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- Applied in changeset commit:cdm-vaadin|84b030bfbe7c9c0df2b160149c23bb5add938b2a.
- 02:43 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
- due to the changes made in #6581 the setter for NomenclaturalStatus in Taxon Name checks for empty SingleSource entit...
- 04:28 PM Revision a2e4821c (cdmlib): cleanup and improve data and docu for BeanInitializerIntegrationTest.testInitializeManyToOneProperty
- 04:26 PM Revision 8e465f0c (cdmlib): cleanup
- 03:55 PM Revision 87913ce3 (cdmlib): ref #9225 fix AdvancedBeanInitializer test
- 02:46 PM Revision 84b030bf (cdm-vaadin): fix #9229 using NomenclaturalStatusDTO in the TaxonNameEditor
- 12:35 PM Revision 3c03428f (taxeditor): experimental fix for LinkageError related to javax.validation
- 12:35 PM Revision 2d909919 (cdmlib): ref #6581 , ref #9225 cleanup TaxonName from nomenclaturalSource handling
- 12:33 PM Revision 9570db31 (cdmlib): cleanup
- 12:33 PM Revision 12411f3e (cdmlib): ref #9225 fix ValidationTest / 3rd Level duplicate validation for taxon names
09/21/2020
- 04:58 PM Revision 3829682c (cdmlib): ref #9225 !! PRELIMINARY also ValidationTest
- 04:49 PM Revision 93cc59a0 (cdm-vaadin): ref #9225 adapt vaadin test data to new NomenclaturalSource mapping direction
- 04:49 PM Revision adec36b1 (cdm-vaadin): cleanup
- 04:46 PM Revision 286f20a7 (cdmlib): ref #9225 !! PRELIMINARY ignore failing tests
- 04:45 PM Revision ee7148ab (cdmlib): cleanup
- 04:17 PM Revision 893b0a7c (cdmlib): ref #9225 revert direction of TaxonName.nomenclaturalSource -> NomenclaturalSource.sourcedName mapping and some related issues
- 03:11 PM Revision a23d2d0a (taxeditor): move string externalization
- 01:12 PM Revision 8cd385e1 (taxeditor): add connect command to webapp
- 12:43 PM Revision 74947d40 (taxeditor): cleanup
- 12:23 PM Revision 821fe02d (taxeditor): create new branch webapp
- 10:43 AM task #9228 (In Progress): Adaptations to allow editing Centaurea in Flora of Greece
- It has been decided to edit Centaurea data in Flora of Greece. For making this possible a couple of issues need to be...
- 10:33 AM task #9227: corrected entry cannot be saved
- http://phycobank.org/7587 (Import of a 1999 published entry)See screen shot
In TaxEDITor the addition was possible... - 09:58 AM task #9227 (Feedback): corrected entry cannot be saved
- Could you try fix the type designation in the Taxonomic Editor by adding the missing "Kind of Unit" information?
09/18/2020
- 10:01 AM Revision 500c500e (taxeditor): ref #9189: move datasource to webapp - adapt manifest files
- 09:37 AM Revision b33b7c33 (taxeditor): ref #9189: move datasource to webapp - adapt manifest files
- 09:29 AM Revision 8dde8e84 (taxeditor): ref #9189: move datasource to webapp - continue
09/17/2020
- 05:08 PM task #9227 (Worksforme): corrected entry cannot be saved
- Entry from 1999 is missing the mandatory entry Kind of Unit = Specimen.
Action: Add Editorial note "PhycoBank (17 ... - 03:12 PM Revision 139caafa (cdmlib): ref #6589 add ProtologMover (not yet ready)
- 03:12 PM Revision ce8b5e56 (cdmlib): cleanup
- 03:11 PM Revision d8798a32 (cdmlib): fix logging in StructuredDescriptionAggregationTest
- 03:10 PM feature request #6589 (In Progress): Handle protologue as original source with URI link
- 01:32 PM Revision 192243b3 (taxeditor): ref #9189: move datasource to webapp
09/16/2020
- 03:09 PM Revision 5dd900d6 (cdmlib): adding more explanation to test assertion
- 09:58 AM Revision d27add60 (cdmlib): ref #9225 update cached model
09/15/2020
- 10:24 PM bug #9223 (Feedback): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- 10:24 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- Solved, and can be closed.
@Andreas Müller: can you think of a situation which is not yet covered by the [new imp... - 10:21 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- Applied in changeset commit:cdmlib|16b01d149133e36d735b05203a5b26d701a97d93.
- 10:02 AM bug #9223 (In Progress): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- we decided to implement b) . This has been done in #9225 so we can continue here now.
- 10:21 PM Revision 16b01d14 (cdmlib): fix #9223 TaxonGraphBeforeTransactionCompleteProcess using NoemclaturalSource to detect nomRef changes
- 04:44 PM feature request #9226 (Duplicate): DisabledException should be caught
- This is a duplicate for #8944
- 02:35 PM feature request #9226 (Duplicate): DisabledException should be caught
- When a disabled user tries to connect to a cdm instance the DisabledException is thrown, this exception should be cau...
- 11:18 AM Revision f5d9192a (taxeditor): ref #9225: adapt editor to new NomenclaturalCource
- 11:03 AM Revision 2c6b7b29 (cdmlib): Revert "temporarily unignore failing test"
- This reverts commit e488332815bad4f7e3de2844f22cf8e36b82314c.
- 11:02 AM Revision e4883328 (cdmlib): temporarily unignore failing test
- 10:48 AM feature request #4383: multiple issues with de-duplication of references in bibliography
- I think we should reasses the priority of this ticket as it is reported from time to time
- 10:46 AM feature request #4383: multiple issues with de-duplication of references in bibliography
- Same problem reported by Sophia:
mir ist gerade aufgefallen dass im Portal der Flora Cuba die Referenzen, die bei ... - 10:28 AM Revision 79deca9c (taxeditor): avoid NPE in taxonnodedetail element
- 10:21 AM Revision 05767456 (taxeditor): cleanup navigation fragment
- 10:01 AM feature request #9225 (In Progress): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
- This is implemented but there are still tests failing in vaading which seems to be related to this change.
- 09:33 AM Revision 19deb7da (cdmlib): ref #9225 implement NomenclaturalSource (cleanup and update script)
- 09:25 AM Revision 7c1e42bf (cdmlib): cleanup
- 09:23 AM Revision 2dc2379c (cdmlib): deprecate printDataSetWithNull
- 12:31 AM Revision 7793d2a5 (cdm-vaadin): cleanup
- 12:30 AM Revision 9d33a6ec (cdm-vaadin): ref #9225 adapt vaadin test data to NomenclaturalSource
09/14/2020
- 11:03 PM Revision 50c1d6f4 (cdmlib): cleanup
- 11:03 PM Revision f694f9a2 (cdmlib): ref #9225 implement NomenclaturalSource
- 11:03 PM Revision 3a5f3569 (cdmlib): cleanup
- 11:03 PM Revision cdbbcaaf (cdmlib): ref #6581 add listener to TaxonName.nomenclaturalSource (cont.)
- 11:03 PM Revision fb36cce9 (cdmlib): ref #3547 remove created and updated in CdmEntityDaoBaseTest
- 11:03 PM Revision 8def7553 (cdmlib): cleanup
- 11:02 PM Revision 9e4028e0 (cdmlib): ref #6581 add listener to TaxonName.nomenclaturalSource
- 10:39 PM feature request #9225 (Closed): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
- copied from #6581 and #9223
This is required for nomenclatural (detail) reference state change handling - 03:25 PM bug #9143 (New): Distribution data sources are missing if multiple distributions exist
- 01:08 PM feature request #9224 (Closed): openlayers map handles server error per layer and presents a user message
- in `openlayers_layers.js` error handlers need to be implemented that allow for presenting user messages in case of se...
- 08:38 AM Revision 4ea4c60e (cdm-dataportal): additional map server url http://geocatalogue.africamuseum.be for testing migration
09/11/2020
- 05:57 PM bug #9223 (Feedback): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- Update!
d) und c) scheiden aus denn bei einem SessionFlush, ohne saveOrUpdate(taxonName) wird der TaxonGraphBefore... - 05:57 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- Hallo,
die sicherste und einfachste Lösung a) wäre eine neue DescriptionSource zu erzeugen wenn sich die citation ... - 05:56 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- Hallo Andreas
die Umstellung auf Single-Source-Referenzen bei TaxonName verträgt sich mit dem TaxonGraphBeforeTran... - 05:53 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
- due to the model modifications made for #6581 the `TaxonGraphHibernateListenerTest.testChangeNomRef()` fails since th...
- 04:19 PM Revision a38340e1 (cdmlib): ref #6581 fixing means to get bean property
- 01:22 PM task #7862 (Closed): Improve documentation on TaxonGraphHibernateListener and related classes
- 01:22 PM task #7862 (Resolved): Improve documentation on TaxonGraphHibernateListener and related classes
- Applied in changeset commit:cdmlib|a38e2585039171f028d1ca790949860b74f852be.
- 01:22 PM Revision a38e2585 (cdmlib): fix #7862 full documentation on TaxonGraphHibernateListener, TaxonGraphBeforeTransactionCompleteProcess etc.
- 11:57 AM Revision 93f3d033 (cdm-dataportal): ref #9034 removing preliminar life span code with extensions
09/10/2020
- 05:31 PM Revision dfb24d50 (cdm-dataportal): improving message and fixing invalid medthod name in calling function
- 02:15 PM Revision aa8405de (cdmlib): cleanup
- 02:14 PM Revision e7eb9f3d (cdmlib): ref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml (cont.)
- 02:13 PM Revision d39d9fcd (cdmlib): ref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml
- 02:13 PM Revision d1dade1e (cdm-vaadin): ref #9105 extending init strategy for checkEmpty() in model classes
- 02:07 PM Revision 002ce68d (cdm-dataportal): name page 'Taxa for this name' title also in singular form
- 01:26 PM Revision 53cc93c6 (cdmlib): cleanup and some java doc
- 12:50 PM Revision cbd1fe7a (cdm-vaadin): ref #6581 fixing erroneously changes DTP field name
- 11:09 AM Revision 5a5c5045 (cdm-dataportal): page health check for Drupal errors and warnings configurable
- 09:37 AM Revision 66cd127d (cdmlib): cleanup
- 09:31 AM Revision 7058de02 (cdm-vaadin): ref #6581 adapt vaadin to new nomenclatural source handling
- 08:34 AM Revision 98505c5e (cdmlib): ref #6581 ref #9222 fixing NPE in TaxonPortalController
- 08:24 AM Revision 96847705 (cdmlib): ref #6581 ref #9222 fixing init strategy in TaxonPortalController
09/09/2020
- 10:24 PM Revision 9f76b617 (cdmlib): fix TaxonName.getCitationString()
- 10:24 PM Revision f132fe1d (cdmlib): cleanup
- 06:16 PM Revision 84d9a25e (cdmlib): ref #6581 ref #9222 adding PolytomousKeyNodePortalController and missing name.nomenclaturalSource init strategys in TaxonPortalController
- 06:13 PM Revision a9a297f6 (cdm-dataportal): ref #9222 fixing bug in polytomous key rendering related to single source classes and speeding up polytomous keys in general by reducing web service calls
- 04:42 PM Revision e9c8c928 (cdmlib): remove method rectifyNameCacheStrategy and some cleanup
- 04:37 PM Revision 6d399b0d (cdmlib): cleanup
- 03:45 PM Revision ee0b6690 (cdmlib): fix return type of clone methods in CdmBase classes and some cleanup
- 02:31 PM Revision 8850b8e7 (cdmlib): cleanup
- 02:31 PM Revision 19d5d18b (cdmlib): ref #9204 adapt all spring application context xml configuration files to spring schema version 4.3
- 01:47 PM Revision afb1f504 (cdm-dataportal): ref #9222 adapting tests to more data being visible in the specimen views
- 12:45 PM Revision 7d19ee1c (cdmlib): ref #9222 adapting dataportal and tests to single sourced classes - typedesignations
- 12:44 PM Revision 46a93d1e (cdm-dataportal): ref #9222 adapting specimens and typedesignations to single sourced
- 11:05 AM Revision f02e26e1 (cdm-dataportal): adapting remainig tests to new date formating
- 10:12 AM Revision 6679207a (cdm-dataportal): ref #9222 adapting dataportal and tests to single sourced classes
- 10:07 AM Revision 4dee6d44 (cdmlib): ref #9222 ref #6581 adapting web services to single sourced classes
09/08/2020
- 05:05 PM task #9222 (Closed): Adapt dataportal to switch to originalSource for remaining single sourced classes
- this affects all single sources classes (#6581) except for TaxonNode which has been handled earlier already
- 02:28 PM Revision ad6ad4c6 (cdm-dataportal): cleaning unused variable
- 02:27 PM Revision 43a2f169 (cdm-dataportal): ref #9087 restoring erroneously removed error check
- 09:55 AM feature request #9221: New preferences for 'project metadata'
- I think the storing location still needs to be discussed. It could also be a new CDM table "project" or maybe CdmMeta...
- 09:13 AM feature request #9221 (New): New preferences for 'project metadata'
- For cdmLight/GfBio and DwC-A we need some meta data of the project, to avoid to enter them for each export we should ...
- 09:10 AM feature request #9110: Add additional informations to metadata table of cdmLight
- Andreas Müller wrote:
> Some of these new data seem to be very GfBio specific so I wonder if we should have them in ... - 12:45 AM Revision df19b88a (cdmlib-apps): update BgbmInstancesUpdater to current state
09/07/2020
- 10:38 PM Revision e29ed013 (cdmlib): adapt TestModelUpdate
- 10:37 PM Revision c754177e (cdmlib): ref #6581 fix detail handling with single quote character
- 10:34 PM Revision cc651bea (cdmlib): ref #9124 skip altitude adder if altitude feature does not yet exist
- 10:32 PM Revision e830b16f (cdmlib): cleanup
- 06:37 PM Revision 5a407e53 (cdmlib-apps): update image imports to new apache commons imaging
- 06:19 PM Revision 01146fd8 (cdmlib-apps): cleanup
- 06:11 PM Revision aea2f0ea (cdm-dataportal): ref #9220 registratin page using query param 'identifier' to protect against CVE-2007-0450 vulnerability
- 05:52 PM Revision ec8b3c45 (cdmlib): fix #8964 update reverse label for later homonym (update script)
- 05:52 PM Revision 5a3638fe (cdmlib): fix #8326 update label for blocking name and isonym relationships (update script)
- 05:52 PM Revision d7bb67dd (cdmlib): fix #9124 add meter to altitude (update script)
- 05:52 PM Revision 662d3c82 (cdmlib): fix #9120 update flowering period as supports temporal data (update script)
- 05:52 PM Revision 91f64efa (cdmlib): fix #9121 add abbrevLabel and symbol to features flowering and fruiting (update script)
- 05:52 PM Revision 062d3624 (cdmlib): fix #9062 remove StatisticalMeasurementValue.value_old
- 05:52 PM Revision 2c2fb8fe (cdmlib): fix #9082 fix empty partials_start and partials_end handling
- 05:52 PM Revision 3bcb7fc8 (cdmlib): fix #9094 update TaxonNode.source from IdentifiableSource to DescriptionElementSource
- 05:52 PM Revision f800c017 (cdmlib): ref #6581 move references to sources for NomenclaturalStatus, NameRelationship, TaxonRelationship, HybridRelationship, TypeDesignation and TaxonName.nomenclaturalReference
- 05:52 PM Revision 5b113fbe (cdmlib): add base functionality for model update 5.15.2 -> 5.18.0
- 05:52 PM Revision 5b34cfd9 (cdmlib): ref #9121 and ref #9124 add abbreviations to feature and add measurement unit to feature altitude
- 05:52 PM Revision e68e45bd (cdmlib): fix DefaultTermInitializerTest in Suite
- 05:25 PM bug #9220 (Resolved): adapt dataportal to /registrationDTO now using identifier as query parameter and secure against CVE-2007-0450 vulnerability
- Applied in changeset commit:cdm-dataportal|bd15166b63c77d27c4d30e3d9b881fc6f776b9a2.
- 04:52 PM bug #9220 (Closed): adapt dataportal to /registrationDTO now using identifier as query parameter and secure against CVE-2007-0450 vulnerability
- A)
the registration page must be secured against [CVE-2007-0450](https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE... - 05:25 PM Revision bd15166b (cdm-dataportal): fix #9220 dataportal adapted to registration controllers now using identifier as query parameter
- 05:24 PM bug #9218 (Resolved): Change /registrationDTO/identifier/... signatures to use query parameters instead
- Applied in changeset commit:cdmlib|ab4c6c1209ce78cbcce640a6dcbce1e4b1241195.
- 04:14 PM bug #9218 (Closed): Change /registrationDTO/identifier/... signatures to use query parameters instead
- Using slashes, double slashes, back slashes in URLs has security implications (see [CVE-2007-0450](https://cve.mitre....
- 05:24 PM Revision ab4c6c12 (cdmlib): fix #9218 RegistrationController and RegistrationDTOController conform to CVE-2007-0450
- 05:18 PM feature request #9110 (Feedback): Add additional informations to metadata table of cdmLight
- Some of these new data seem to be very GfBio specific so I wonder if we should have them in the ordinary workflow or ...
- 04:49 PM task #9219 (New): Revert: requests with %2F in URL are rejected by apache
- remove the `AllowEncodedSlashes On` made for #7563 from apache configurations:
~~~
#
# NOTE: AllowEncodedSla... - 03:24 PM Revision b68da265 (cdmlib): ref #9103 adding missing init strategy element to TaxonController
- 02:13 PM bug #9214: It is not possible to create a new schema in h2 database
- Andreas Kohlbecker wrote:
> From reading the stack trace it seems as if you attempted to create the db from within t... - 01:00 PM bug #9214 (New): It is not possible to create a new schema in h2 database
- 12:59 PM bug #9214: It is not possible to create a new schema in h2 database
- Andreas Kohlbecker wrote:
> From reading the stack trace it seems as if you attempted to create the db from within t... - 09:52 AM bug #9214 (Feedback): It is not possible to create a new schema in h2 database
- From reading the stack trace it seems as if you attempted to create the db from within the taxeditor datasources view...
- 02:01 PM bug #9217 (New): swagger-ui slow in Cromium and freezes Firefox
- Firefox can no longer render the swagger-ui due to massive performance problems, the Chromium browser succeeds render...
- 01:42 PM feature request #9216 (New): Derivate tree view should merge branches to multiple root elements into one branch
- Note: The root of non-cyclic directed graph of derivation events can either be a FieldUnit or a DerivedUnit
The fo... - 01:31 PM feature request #7704: Dataportal specimen table should be able to show DerivedUnits without a FieldUnit
- We discussed this topic in the EDIT standup today ... updating the ticket description with the outcome.
09/04/2020
- 03:45 PM Revision 43cd5dcc (cdmlib): cleanup
09/03/2020
- 01:58 PM Revision f4935a73 (cdmlib): avoid multiple representation exception for source
- 01:55 PM bug #9215: Drop down for empty rank does not work
- please review
- 01:54 PM bug #9215 (Resolved): Drop down for empty rank does not work
- Applied in changeset commit:taxeditor|cdd296d810fa3b1873c2442fadd65903f139b747.
- 01:48 PM bug #9215 (Closed): Drop down for empty rank does not work
- For an empty rank the combo box does not keep open to select a rank, it is necessary to enter a character to get a se...
- 01:54 PM Revision cdd296d8 (taxeditor): fix #9215: fire property change event only when something is selected in term combo element
- 12:55 PM bug #8964: Improve label for homonym relationships
- The reverse labels were still missing the change. This will come with v5.18
- 12:39 PM bug #8326 (Resolved): update labels for is blocking name and is isonym
- 12:02 PM bug #9124 (Resolved): Altitude feature should have [m] as measurement unit by default
- 10:06 AM bug #9214 (New): It is not possible to create a new schema in h2 database
- Trying to create a schema in an emtpy h2 database results in an exception:
~~~
client error time : 2020-09-03... - 09:26 AM task #9120 (Resolved): Update script for flowering period supports temporal data
- 06:35 AM Revision 616de8d6 (cdmlib): fix compile error in DefaultTermInitializerTest
- 06:29 AM Revision 49a38456 (cdmlib): close csv reader for TermLoader
- 06:29 AM Revision da93d83b (cdmlib): ref #9211 add TODO on Classification.source
- 06:29 AM Revision f9390be8 (cdmlib): cleanup
- 06:29 AM Revision 6364fc79 (cdmlib): revert ignore for EditGeoServiceTest
- 06:20 AM feature request #9121 (Resolved): Add abbreviations to Feature
09/02/2020
- 06:11 PM bug #9213: specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists
- The real problem for the missing specimen information in the portal for *Lactuca serriola* in the Cichoriae portal i...
- 05:52 PM bug #9213: specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists
- `taxon/85176c77-e4b6-4899-a08b-e257ab09350a/fieldUnitDTOs` seems to be broken due to problems in the method `FieldUni...
- 05:08 PM bug #9213 (Closed): specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists
- Former Subject *portal/taxon/{taxon_uuid}/associatedFieldUnits and taxon/{uuid}/fieldUnitDTOs.json return empty pager...
- 05:36 PM task #9062 (Resolved): Remove StatisticalMeasurementValue.value_old
- 05:27 PM Revision 815d2806 (cdmlib): ref #9212 logging more information in preparation for fixing this bug
- 03:59 PM Revision 761f281b (cdmlib): removing unused taglib dependencies
- 03:53 PM bug #9212 (New): swagger-ui invalid try out URLs under HTTPS
- when accessing the swagger UI with HTTP scheme, the generated links are invalid since they have port 80 set explicit...
- 03:13 PM task #9082 (Resolved): Update script for old empty Partials handling
- 02:27 PM task #9094 (Resolved): Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource
- 02:19 PM Revision 61b09b70 (cdmlib): cleanup
- 02:16 PM feature request #9211 (Closed): Handle source(s) for Classification
- In #6581 we replaced reference links by sources (e.g. for SingleSourcedEntityBase). Classification is already Identif...
- 01:39 PM Revision 700d5eee (taxeditor): ref #9204 remove solr dependencies from taxeditor.cdmlib
- 01:39 PM Revision 7acd5ac9 (taxeditor): ref #9204 update to commons-codec 1.15 in taxeditor.cdmlib
- 01:37 PM Revision 7894c090 (cdmlib): ref #9204 update to commons-codec 1.15 in cdmlib
- 10:01 AM Revision d7f577db (cdmlib): cleanup
- 08:48 AM bug #9143: Distribution data sources are missing if multiple distributions exist
- Andreas Müller wrote:
> Andreas Müller wrote:
> > The problem is already described in #4366. However, there it is h... - 01:24 AM Revision b3a189f4 (cdmlib): cleanup
- 01:24 AM Revision 0afeecdf (cdmlib): ref #9204 revert removing xml-apis from cdmlib
- 01:08 AM Revision 0c3e6f86 (cdmlib): ref #9204 fix parent pom
- 01:08 AM Revision a589b634 (cdmlib): ref #9204 remove xml-apis from cdmlib as it is included in java8 (cont.)
- 12:56 AM Revision 0319ea6d (cdmlib): ref #9204 remove xml-apis from cdmlib as it is included in java8
- 12:29 AM Revision ec02ae73 (cdmlib): ref #9204 remove stax from cdmlib as it is included in java8
09/01/2020
- 10:07 PM Revision fc24a0af (taxeditor): ref #9204 remove jaxb-api and javax.activation-api from taxeditor.cdmlib
- 09:58 PM Revision 7cb734eb (cdmlib): ref #9204 replace jaxb-api by jakarta.xml.bind-api in cdmlib
- 09:12 PM Revision 6aef3b0e (taxeditor): ref #9204 remove odfdom and odfdom-java from taxeditor.cdmlib (if at all needed in cdmlib-print)
- 09:08 PM Revision ca64773c (taxeditor): ref #9204 remove docx4j and dependencies from taxeditor.cdmlib
- 08:56 PM Revision 8905d679 (cdmlib): cleanup
- 08:56 PM Revision 61311054 (cdmlib): ref #9204 remove aspectjrt and some other cleanup related to aspectj
- 05:34 PM bug #9210 (Closed): invalid format string usage in MediaAutoInitializer
- 04:44 PM bug #9210 (Resolved): invalid format string usage in MediaAutoInitializer
- Applied in changeset commit:cdmlib|0ff88328598e579703420b77a4d18435ae086348.
- 04:30 PM bug #9210 (Closed): invalid format string usage in MediaAutoInitializer
- The format string as being used in
~~~
String.format(" LEFT JOIN FETCH %s.representations LEFT JOIN FETCH %s.tit... - 04:44 PM Revision 0ff88328 (cdmlib): fix #9210 adding indexed format specifiers and fixing hql issues
- 04:27 PM Revision d1bd1389 (cdmlib): ref #9204 update maven-resources-plugin to 2.7 (v3.x.x is available but needs adaptation) and cleanup
- 04:12 PM Revision 2a910618 (cdmlib): ref #9204 preliminary revert maven-antrun-plugin version in cdmlib-model
- 04:10 PM task #8865: more external-links to be implemented
- Hallo,
zu den External Links für Images sollten wir neben Google und flickr auf jeden Fall den folgenden aufnehm... - 03:59 PM Revision cd1b1721 (cdmlib): ref #9204 update maven-jar-plugin to v 3.2.0
- 03:58 PM Revision 4f851db4 (cdmlib): ref #9204 move and comment hibernate3-maven-plugin for 001_cdm.ddl creation to cdmlib-test
- 03:49 PM Revision cbb1ecbb (cdmlib): cleanup
- 03:48 PM Revision 6a052b69 (cdmlib): ref #9204fix version in maven-antrun-plugin
- 03:35 PM Revision c643903d (cdmlib): ref #9204 update maven-antrun-plugin to v 3.0.0
- 03:33 PM Revision 6e0b3ca8 (cdmlib): update maven-surefire-plugin to latest version
- 03:31 PM Revision b4349f25 (cdmlib): cleanup
- 03:18 PM Revision e0b7f901 (cdmlib): ref #9204 upgrade osgi.core to v7 and upgrade maven-bundle-plugin to 5.1.1
- 02:33 PM task #9201: Titelcache creation for nested collections - DISCUSS
- Example in Test-PhycoBank
Abas vulgaris
Given A. Kohlbecker has stored his samples at two places:
"Coll. Kohlbec... - 02:18 PM task #8928 (Closed): Swap menu entries for specimen bulk editors
- 12:36 PM task #8928 (Resolved): Swap menu entries for specimen bulk editors
- I think this is fixed. I already reviewed and it looks fine. I also attached the commit to ticket. So please feel fre...
- 02:14 PM Revision e290270f (cdmlib): cleanup
- 02:13 PM Revision c3149512 (cdmlib): ref #9204 try to remove org.ecipse:osgi from cdmlib-service and upgrade org.osgi.core to v6
- 01:50 PM feature request #9209 (Closed): name page, registration page: show annotations for names and fieldunits
Beispiel: Etymology & Editorial Note zum korrigierten Namen Entomoneis annagodhei:
* https://www.phycobank.or...- 01:19 PM Revision cef595a2 (cdmlib): ref #9204 remove ooxml-schemas-1.4 from cdmlib-io (keep only poi-ooxml-schemas)
- 09:52 AM Revision f06abdc2 (taxeditor): ref #9204 revert removing dao packages from taxeditor.cdmlib MANIFEST.MF
- 12:25 AM Revision 6fd96475 (taxeditor): cleanup
- 12:25 AM Revision 180bb38e (taxeditor): ref #9204 revert removing cdmlib-persistencefrom MANIFEST.MF in taxeditor.cdmlib
- 12:12 AM Revision 7933db8c (taxeditor): ref #9204 remove persistence.dao from MANIFEST.MF export in taxeditor.cdmlib
- 12:11 AM Revision c8d6f9c4 (taxeditor): cleanup
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