Project

General

Profile

Activity

From 08/26/2020 to 09/24/2020

09/24/2020

06:56 PM task #9233: Provide feedback mechanism for dataportals

Eine weniger störende, aber wohl auch effektive Maßnahme ist es, nur eine „I am no robot“ checkbox zu haben – d...
Andreas Kohlbecker
06:51 PM task #9233 (New): Provide feedback mechanism for dataportals
Requirements:
* allow feedback for annonymous users per cdm content page
* store feedback in db
* feedback refer...
Andreas Kohlbecker
06:25 PM feature request #9232: Name page: taxon section improvement
Hallo,

bezüglich „Taxon for this name”:
die derzeitige Anzeige (wie auf http://cichorieae.e-taxonomy.net/p...
Andreas Kohlbecker
06:22 PM feature request #9232 (New): Name page: taxon section improvement
copied from #8391
A) distinguish taxa which are directly associated to the name and those only using the same simp...
Andreas Kohlbecker
06:17 PM feature request #8304: Name page redirects to according taxon depending on query parameter
Hi Andreas, I am voting to close this issue as it is 1. fully solved and secondly the solution is not preventing us f... Andreas Kohlbecker
06:03 PM feature request #8108 (Closed): Name page shows complete name information (I)
According my interpretation of the last comment to this ticket I am closing it now.
Please reopen if I am misinter...
Andreas Kohlbecker
05:28 PM task #9231: Create statistics for Euro+Med
Query for 2:
~~~ sql
-- EM Query Superareale
SELECT areaMarker, rankName, STATUS, n
FROM
(
SELECT 'All' AS...
Andreas Müller
05:22 PM task #9231: Create statistics for Euro+Med
Query for 1.
~~~sql
-- E+M Full Area

SELECT rankName, STATUS, n
FROM
(
SELECT 'All' A...
Andreas Müller
05:07 PM task #9231 (In Progress): Create statistics for Euro+Med
Generally absent taxa or taxa without distribution should not be included. Same for unpublished taxa and "valueless" ... Andreas Müller
03:36 PM bug #9124: Altitude feature should have [m] as measurement unit by default
The first implementatin of the update script had a serious bug as it filled the table DefinedTermBase_StatisticalMeas... Andreas Müller
12:29 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
Similar problem to the already solved one with displayed unpublished names related to published names (#8328)
The ...
Wolf-Henning Kusber

09/22/2020

07:38 PM task #9227 (Worksforme): corrected entry cannot be saved
Kind of Unit can be added in Vaadin,
if (1) this is the first step before
(2) editing other parts and (3) saving th...
Wolf-Henning Kusber
10:58 AM task #9227: corrected entry cannot be saved
![](picture360-1.png) Wolf-Henning Kusber
06:45 PM feature request #9224: openlayers map handles server error per layer and presents a user message
made available to production servers as HFX release 5.17.1.
Needs more testing though regarding error conditions ...
Andreas Kohlbecker
06:28 PM feature request #9224 (In Progress): openlayers map handles server error per layer and presents a user message
Andreas Kohlbecker
06:26 PM bug #6356 (Resolved): taxontree sort order as in editor
Please confirm that the sort order is now as expected. Andreas Kohlbecker
06:25 PM bug #6356: taxontree sort order as in editor
The sort code in `cdm_taxontree_populate()` mentioned above is related to the no longer used special featured of the ... Andreas Kohlbecker
06:12 PM bug #6356 (In Progress): taxontree sort order as in editor
Andreas Kohlbecker
04:52 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
tested as being fully functional Andreas Kohlbecker
04:52 PM feature request #9229 (Resolved): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
Applied in changeset commit:cdm-vaadin|84b030bfbe7c9c0df2b160149c23bb5add938b2a. Andreas Kohlbecker
02:43 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName
due to the changes made in #6581 the setter for NomenclaturalStatus in Taxon Name checks for empty SingleSource entit... Andreas Kohlbecker

09/21/2020

10:43 AM task #9228 (In Progress): Adaptations to allow editing Centaurea in Flora of Greece
It has been decided to edit Centaurea data in Flora of Greece. For making this possible a couple of issues need to be... Andreas Müller
10:33 AM task #9227: corrected entry cannot be saved
http://phycobank.org/7587 (Import of a 1999 published entry)See screen shot
In TaxEDITor the addition was possible...
Wolf-Henning Kusber
09:58 AM task #9227 (Feedback): corrected entry cannot be saved
Could you try fix the type designation in the Taxonomic Editor by adding the missing "Kind of Unit" information? Andreas Kohlbecker

09/17/2020

05:08 PM task #9227 (Worksforme): corrected entry cannot be saved
Entry from 1999 is missing the mandatory entry Kind of Unit = Specimen.
Action: Add Editorial note "PhycoBank (17 ...
Wolf-Henning Kusber
03:10 PM feature request #6589 (In Progress): Handle protologue as original source with URI link
Andreas Müller

09/15/2020

10:24 PM bug #9223 (Feedback): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
Andreas Kohlbecker
10:24 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
Solved, and can be closed.
@Andreas Müller: can you think of a situation which is not yet covered by the [new imp...
Andreas Kohlbecker
10:21 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
Applied in changeset commit:cdmlib|16b01d149133e36d735b05203a5b26d701a97d93. Andreas Kohlbecker
10:02 AM bug #9223 (In Progress): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
we decided to implement b) . This has been done in #9225 so we can continue here now. Andreas Müller
04:44 PM feature request #9226 (Duplicate): DisabledException should be caught
This is a duplicate for #8944 Andreas Müller
02:35 PM feature request #9226 (Duplicate): DisabledException should be caught
When a disabled user tries to connect to a cdm instance the DisabledException is thrown, this exception should be cau... Katja Luther
10:48 AM feature request #4383: multiple issues with de-duplication of references in bibliography
I think we should reasses the priority of this ticket as it is reported from time to time Andreas Müller
10:46 AM feature request #4383: multiple issues with de-duplication of references in bibliography
Same problem reported by Sophia:
mir ist gerade aufgefallen dass im Portal der Flora Cuba die Referenzen, die bei ...
Andreas Müller
10:01 AM feature request #9225 (In Progress): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
This is implemented but there are still tests failing in vaading which seems to be related to this change. Andreas Müller

09/14/2020

10:39 PM feature request #9225 (Closed): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
copied from #6581 and #9223
This is required for nomenclatural (detail) reference state change handling
Andreas Müller
03:25 PM bug #9143 (New): Distribution data sources are missing if multiple distributions exist
Andreas Müller
01:08 PM feature request #9224 (Closed): openlayers map handles server error per layer and presents a user message
in `openlayers_layers.js` error handlers need to be implemented that allow for presenting user messages in case of se... Andreas Kohlbecker

09/11/2020

05:57 PM bug #9223 (Feedback): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
Update!
d) und c) scheiden aus denn bei einem SessionFlush, ohne saveOrUpdate(taxonName) wird der TaxonGraphBefore...
Andreas Kohlbecker
05:57 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
Hallo,
die sicherste und einfachste Lösung a) wäre eine neue DescriptionSource zu erzeugen wenn sich die citation ...
Andreas Kohlbecker
05:56 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
Hallo Andreas
die Umstellung auf Single-Source-Referenzen bei TaxonName verträgt sich mit dem TaxonGraphBeforeTran...
Andreas Kohlbecker
05:53 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess
due to the model modifications made for #6581 the `TaxonGraphHibernateListenerTest.testChangeNomRef()` fails since th... Andreas Kohlbecker
01:22 PM task #7862 (Closed): Improve documentation on TaxonGraphHibernateListener and related classes
Andreas Kohlbecker
01:22 PM task #7862 (Resolved): Improve documentation on TaxonGraphHibernateListener and related classes
Applied in changeset commit:cdmlib|a38e2585039171f028d1ca790949860b74f852be. Andreas Kohlbecker

09/08/2020

05:05 PM task #9222 (Closed): Adapt dataportal to switch to originalSource for remaining single sourced classes
this affects all single sources classes (#6581) except for TaxonNode which has been handled earlier already Andreas Kohlbecker
09:55 AM feature request #9221: New preferences for 'project metadata'
I think the storing location still needs to be discussed. It could also be a new CDM table "project" or maybe CdmMeta... Andreas Müller
09:13 AM feature request #9221 (New): New preferences for 'project metadata'
For cdmLight/GfBio and DwC-A we need some meta data of the project, to avoid to enter them for each export we should ... Katja Luther
09:10 AM feature request #9110: Add additional informations to metadata table of cdmLight
Andreas Müller wrote:
> Some of these new data seem to be very GfBio specific so I wonder if we should have them in ...
Katja Luther

09/07/2020

05:25 PM bug #9220 (Resolved): adapt dataportal to /registrationDTO now using identifier as query parameter and secure against CVE-2007-0450 vulnerability
Applied in changeset commit:cdm-dataportal|bd15166b63c77d27c4d30e3d9b881fc6f776b9a2. Andreas Kohlbecker
04:52 PM bug #9220 (Closed): adapt dataportal to /registrationDTO now using identifier as query parameter and secure against CVE-2007-0450 vulnerability
A)
the registration page must be secured against [CVE-2007-0450](https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE...
Andreas Kohlbecker
05:24 PM bug #9218 (Resolved): Change /registrationDTO/identifier/... signatures to use query parameters instead
Applied in changeset commit:cdmlib|ab4c6c1209ce78cbcce640a6dcbce1e4b1241195. Andreas Kohlbecker
04:14 PM bug #9218 (Closed): Change /registrationDTO/identifier/... signatures to use query parameters instead
Using slashes, double slashes, back slashes in URLs has security implications (see [CVE-2007-0450](https://cve.mitre.... Andreas Kohlbecker
05:18 PM feature request #9110 (Feedback): Add additional informations to metadata table of cdmLight
Some of these new data seem to be very GfBio specific so I wonder if we should have them in the ordinary workflow or ... Andreas Müller
04:49 PM task #9219 (New): Revert: requests with %2F in URL are rejected by apache
remove the `AllowEncodedSlashes On` made for #7563 from apache configurations:
~~~
#
# NOTE: AllowEncodedSla...
Andreas Kohlbecker
02:13 PM bug #9214: It is not possible to create a new schema in h2 database
Andreas Kohlbecker wrote:
> From reading the stack trace it seems as if you attempted to create the db from within t...
Katja Luther
01:00 PM bug #9214 (New): It is not possible to create a new schema in h2 database
Andreas Müller
12:59 PM bug #9214: It is not possible to create a new schema in h2 database
Andreas Kohlbecker wrote:
> From reading the stack trace it seems as if you attempted to create the db from within t...
Andreas Müller
09:52 AM bug #9214 (Feedback): It is not possible to create a new schema in h2 database
From reading the stack trace it seems as if you attempted to create the db from within the taxeditor datasources view... Andreas Kohlbecker
02:01 PM bug #9217 (New): swagger-ui slow in Cromium and freezes Firefox
Firefox can no longer render the swagger-ui due to massive performance problems, the Chromium browser succeeds render... Andreas Kohlbecker
01:42 PM feature request #9216 (New): Derivate tree view should merge branches to multiple root elements into one branch
Note: The root of non-cyclic directed graph of derivation events can either be a FieldUnit or a DerivedUnit
The fo...
Andreas Kohlbecker
01:31 PM feature request #7704: Dataportal specimen table should be able to show DerivedUnits without a FieldUnit
We discussed this topic in the EDIT standup today ... updating the ticket description with the outcome. Andreas Kohlbecker

09/03/2020

01:55 PM bug #9215: Drop down for empty rank does not work
please review Katja Luther
01:54 PM bug #9215 (Resolved): Drop down for empty rank does not work
Applied in changeset commit:taxeditor|cdd296d810fa3b1873c2442fadd65903f139b747. Katja Luther
01:48 PM bug #9215 (Closed): Drop down for empty rank does not work
For an empty rank the combo box does not keep open to select a rank, it is necessary to enter a character to get a se... Katja Luther
12:55 PM bug #8964: Improve label for homonym relationships
The reverse labels were still missing the change. This will come with v5.18 Andreas Müller
12:39 PM bug #8326 (Resolved): update labels for is blocking name and is isonym
Andreas Müller
12:02 PM bug #9124 (Resolved): Altitude feature should have [m] as measurement unit by default
Andreas Müller
10:06 AM bug #9214 (New): It is not possible to create a new schema in h2 database
Trying to create a schema in an emtpy h2 database results in an exception:
~~~
client error time : 2020-09-03...
Katja Luther
09:26 AM task #9120 (Resolved): Update script for flowering period supports temporal data
Andreas Müller
06:20 AM feature request #9121 (Resolved): Add abbreviations to Feature
Andreas Müller

09/02/2020

06:11 PM bug #9213: specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists
The real problem for the missing specimen information in the portal for *Lactuca serriola* in the Cichoriae portal i... Andreas Kohlbecker
05:52 PM bug #9213: specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists
`taxon/85176c77-e4b6-4899-a08b-e257ab09350a/fieldUnitDTOs` seems to be broken due to problems in the method `FieldUni... Andreas Kohlbecker
05:08 PM bug #9213 (Closed): specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists
Former Subject *portal/taxon/{taxon_uuid}/associatedFieldUnits and taxon/{uuid}/fieldUnitDTOs.json return empty pager... Andreas Kohlbecker
05:36 PM task #9062 (Resolved): Remove StatisticalMeasurementValue.value_old
Andreas Müller
03:53 PM bug #9212 (New): swagger-ui invalid try out URLs under HTTPS
when accessing the swagger UI with HTTP scheme, the generated links are invalid since they have port 80 set explicit... Andreas Kohlbecker
03:13 PM task #9082 (Resolved): Update script for old empty Partials handling
Andreas Müller
02:27 PM task #9094 (Resolved): Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource
Andreas Müller
02:16 PM feature request #9211 (Closed): Handle source(s) for Classification
In #6581 we replaced reference links by sources (e.g. for SingleSourcedEntityBase). Classification is already Identif... Andreas Müller
08:48 AM bug #9143: Distribution data sources are missing if multiple distributions exist
Andreas Müller wrote:
> Andreas Müller wrote:
> > The problem is already described in #4366. However, there it is h...
Andreas Kohlbecker

09/01/2020

05:34 PM bug #9210 (Closed): invalid format string usage in MediaAutoInitializer
Andreas Kohlbecker
04:44 PM bug #9210 (Resolved): invalid format string usage in MediaAutoInitializer
Applied in changeset commit:cdmlib|0ff88328598e579703420b77a4d18435ae086348. Andreas Kohlbecker
04:30 PM bug #9210 (Closed): invalid format string usage in MediaAutoInitializer
The format string as being used in
~~~
String.format(" LEFT JOIN FETCH %s.representations LEFT JOIN FETCH %s.tit...
Andreas Kohlbecker
04:10 PM task #8865: more external-links to be implemented
Hallo,
zu den External Links für Images sollten wir neben Google und flickr auf jeden Fall den folgenden aufnehm...
Andreas Kohlbecker
02:33 PM task #9201: Titelcache creation for nested collections - DISCUSS
Example in Test-PhycoBank
Abas vulgaris
Given A. Kohlbecker has stored his samples at two places:
"Coll. Kohlbec...
Wolf-Henning Kusber
02:18 PM task #8928 (Closed): Swap menu entries for specimen bulk editors
Katja Luther
12:36 PM task #8928 (Resolved): Swap menu entries for specimen bulk editors
I think this is fixed. I already reviewed and it looks fine. I also attached the commit to ticket. So please feel fre... Andreas Müller
01:50 PM feature request #9209 (Closed): name page, registration page: show annotations for names and fieldunits

Beispiel: Etymology & Editorial Note zum korrigierten Namen Entomoneis annagodhei:
* https://www.phycobank.or...
Andreas Kohlbecker

08/26/2020

02:47 PM task #9189 (In Progress): Move datasource view to taxeditor.local
Katja Luther
12:27 PM bug #9199 (In Progress): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
adapted are the following elements:
* Nomenclatural Status
* Nomenclatural Reference
* Taxonrelationships/NameRe...
Katja Luther
 

Also available in: Atom