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From 07/19/2020 to 08/17/2020

08/17/2020

09:24 PM bug #9103 (Resolved): missing exception handling in TaxoNodeDto
Ok, so we should fix this right after the release by a proper implementation which
1. checks for `taxonNode.getCl...
Andreas Kohlbecker
08:30 AM bug #9103: missing exception handling in TaxoNodeDto
sorry, I don't know anymore why I did this. Katja Luther
09:16 PM task #9195 (Duplicate): Map TDWG area term to new layer tdwg_levels_1_4
duplicate of #9122 Andreas Kohlbecker
09:15 PM task #9195 (Duplicate): Map TDWG area term to new layer tdwg_levels_1_4
The new layer is here http://edit.africamuseum.be/geoserver/topp/wms?service=WMS&version=1.1.0&request=GetMap&layers... Andreas Kohlbecker
09:16 PM feature request #2489 (Closed): strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
the new shape file works and the layer order is correct as the following links demonstrates:
http://edit.africamus...
Andreas Kohlbecker
08:22 PM feature request #8317 (Closed): Omit ex-author if ex-author=author
Wolf-Henning Kusber wrote:
> I checked the update. For new entrys it is fully functionalble.
> For already used nam...
Andreas Kohlbecker
07:47 PM bug #9143: Distribution data sources are missing if multiple distributions exist
Andreas Müller wrote:
> The problem is already described in #4366. However, there it is handled as pure data aggrega...
Andreas Kohlbecker
07:28 PM feature request #9146: filter image metadata by include and exclude lists of key words
Andreas Müller wrote:
> 1. Wouldn't it be better to have the includes and excludes list within the signature of th...
Andreas Kohlbecker
05:50 PM feature request #9137: IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
In case of the images from Ralf the ICPT keywords field contains structured data:
![](icpt-keywords.png)
These...
Andreas Kohlbecker
05:22 PM feature request #9118 (Closed): Change p2 update site to https in Taxeditor
ticket can be closed Andreas Kohlbecker
02:49 PM feature request #9065 (Resolved): Add derived unit media to DerivedUnitFacade details view
Andreas Müller
12:19 PM feature request #9065: Add derived unit media to DerivedUnitFacade details view
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > For this wizard, maybe the image should ...
Katja Luther
02:48 PM bug #5710: Changing the database connection must reset all caches
Nicht wirklich, es sollte aber überall dort funktionieren, wo möglichst viele Terme sich in ihrer ID unterscheiden, w... Andreas Müller
10:25 AM bug #5710: Changing the database connection must reset all caches
Hast Du Beispiel Datenbanken mit denen ich testen kann? Katja Luther
02:40 PM feature request #5752 (Closed): Reduce TaxEditor size
The size reduction was about 120MB. Most of it (110MB) related to the removed remote-webapp.war file in taxeditor.cdm... Andreas Müller
09:14 AM feature request #5752 (Feedback): Reduce TaxEditor size
Can you please add a summary to the ticked description on the amount of the size reduction?
This could be valuable ...
Andreas Kohlbecker
08:47 AM feature request #5752 (Closed): Reduce TaxEditor size
I checked all removed dependencies and they are not used anyhwere and I did not get any problems while working with t... Katja Luther
02:24 PM feature request #9194 (Closed): Make RelationshipBase and NomenclaturalStatus reference OriginalSource
copied from #6581
This is a subticket for #6581 handling RelationshipBase and NomenclaturalStatus
Andreas Müller
02:07 PM feature request #7599: treeView for specimen data in dataportal
![](picture588-1.png)
this is a screenshot of algaterra-new with a derivate view containing dna derivates and sibl...
Katja Luther
02:06 PM bug #9193 (Resolved): LazyInitializationException (LIE) in portal/taxon/{uuid} web service
Applied in changeset commit:cdmlib|3e7265a1d69b8d05150effa407f1365f63f49e7a. Andreas Kohlbecker
01:49 PM bug #9193 (Closed): LazyInitializationException (LIE) in portal/taxon/{uuid} web service

~~~
13:46:48.411 [euromed] [qtp527446182-30437] INFO e.e.c.r.controller.BaseController - doGet() /euromed/por...
Andreas Kohlbecker
10:47 AM feature request #9128 (Closed): Default copyright statement below image viewer
this ticket is solved and has already been included into the hotfix 5.16.1 Andreas Kohlbecker
10:41 AM bug #9099 (Closed): placemark icon in kml map not clickable
works as expected Andreas Kohlbecker
09:45 AM bug #9171: Doubtful taxa are not found in bulkeditor
Andreas Müller wrote:
> Generally the search works now. But there are the following issues:
>
> * the overriden m...
Katja Luther
09:41 AM task #9119 (Closed): Remove schema create and schema update functionality from datsource view
code removed Katja Luther

08/14/2020

06:06 PM feature request #7599: treeView for specimen data in dataportal
![](derivate-tree-testdata-in-portal.png)
(screen shot for above report)
Andreas Kohlbecker
05:59 PM feature request #7599: treeView for specimen data in dataportal
developing the test for the derivate tree view I found a potential problems.
As far as my understanding of the der...
Andreas Kohlbecker
05:38 PM feature request #9116 (Resolved): Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
Katja Luther
03:49 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
Andreas Müller wrote:
> * External links can not be added, a "+" button is missing
>
> ![](picture319-1.png)
> ...
Katja Luther
01:21 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
Katja Luther wrote:
> This is only as long as you did not enter a reference and therefore a descriptionElementSource...
Andreas Müller
01:15 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
When selecting the placement source the "Additional information" section collapses. This should not happen.
Also w...
Andreas Müller
01:13 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
Andreas Müller wrote:
> * External links can not be added, a "+" button is missing
>
> ![](picture319-1.png)
> ...
Katja Luther
01:12 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxonnode.service
last remote ...
Andreas Müller
01:11 PM feature request #9116 (Feedback): Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
* External links can not be added, a "+" button is missing
![](picture319-1.png)
* There is empty space betwee...
Andreas Müller
12:12 PM feature request #9116 (Resolved): Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
The layout issues should be fixed and also the missing fields. Katja Luther
05:37 PM feature request #9192 (Closed): Layout issues for source in taxonnode details
~~There is empty space between "Advanced" and "Id in Source"~~ => with Name in Source on top this is not an issue any... Katja Luther
05:11 PM task #9191 (Closed): selenium test for specimen tree view (bottom up)
Andreas Kohlbecker
05:11 PM task #9191 (Resolved): selenium test for specimen tree view (bottom up)
Applied in changeset commit:cdm-dataportal|09762fdeff349272d36d32c1272ec0b47e2f441d. Andreas Kohlbecker
07:31 AM task #9191 (Closed): selenium test for specimen tree view (bottom up)
Andreas Kohlbecker
12:54 PM bug #9173 (Closed): NPE when move synonym into homotypical group of accepted
I guess this can be closed now. Andreas Müller
09:00 AM bug #9173 (Resolved): NPE when move synonym into homotypical group of accepted
Katja Luther
12:53 PM feature request #9065: Add derived unit media to DerivedUnitFacade details view
Andreas Müller wrote:
> Katja Luther wrote:
> > For this wizard, maybe the image should not be loaded otherwise the...
Katja Luther
12:13 PM feature request #9065: Add derived unit media to DerivedUnitFacade details view
Katja Luther wrote:
> For this wizard, maybe the image should not be loaded otherwise the time for creating the wiza...
Andreas Müller
11:38 AM feature request #9065: Add derived unit media to DerivedUnitFacade details view
For this wizard, maybe the image should not be loaded otherwise the time for creating the wizard for editing and afte... Katja Luther
12:46 PM bug #9168 (Closed): NameFeature selection in preferences are not shown
This seems to work now. Andreas Müller
10:03 AM bug #9168 (Resolved): NameFeature selection in preferences are not shown
this should be fixed with the last commit, could not reproduce it anymore in nightly. Katja Luther
11:29 AM feature request #9188 (Closed): selenium web element wrapper for dynabox
Andreas Kohlbecker
07:33 AM feature request #9188 (Resolved): selenium web element wrapper for dynabox
Applied in changeset commit:cdm-dataportal|7dff5369cbd948d9235b7d91e4f29524498e68c9. Andreas Kohlbecker
07:33 AM task #9186 (Closed): selenium test for specimen top down view (aka devivate_path view)
Andreas Kohlbecker
07:33 AM task #9186 (Resolved): selenium test for specimen top down view (aka devivate_path view)
Applied in changeset commit:cdm-dataportal|bcc70074782b97ae41c501cda2575d7d07e296a8. Andreas Kohlbecker

08/13/2020

04:59 PM feature request #5752: Reduce TaxEditor size
Can you please review if you think all up-to-now changes (removing of dependencies etc) are ok. I think you do not ne... Andreas Müller
04:46 PM feature request #9190 (In Progress): Make taxeditor.local a loadable plugin not installed by default
copied from #9154 Andreas Müller
04:38 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
OK. It was assigned to me before therefore I asked.
So is the status "Resolved" correct or is there still work to do?
Andreas Müller
02:35 PM task #9132 (Resolved): Update cyprus images to Scaler default API and add thumbnails
This is a complicated issue which required quite some time for a comprehensive explanation comment 15 contains all in... Andreas Kohlbecker
02:20 PM task #9132 (Feedback): Update cyprus images to Scaler default API and add thumbnails
Can you explain this a bit more? I do not yet understand what the exact problem is. Andreas Müller
04:29 PM task #9189 (Closed): Move datasource view to taxeditor.local
As the datasource view is only needed for local mgd. it can be moved to taxeditor.webapp
This way maybe the dataso...
Andreas Müller
03:30 PM feature request #9065 (Feedback): Add derived unit media to DerivedUnitFacade details view
Andreas Müller
03:30 PM feature request #9065: Add derived unit media to DerivedUnitFacade details view
If the derived unit facade is used in a specimen dialogue (e.g. when editing a type specimen) the media section is st... Andreas Müller
11:31 AM feature request #9065 (Resolved): Add derived unit media to DerivedUnitFacade details view
now the media view for list viewer is disabled and the media section in details view for the tree view as well. Katja Luther
10:25 AM feature request #9065: Add derived unit media to DerivedUnitFacade details view
Andreas Müller wrote:
> In the specimen list editor it is now possible to also edit media in the media gallery view....
Katja Luther
03:22 PM feature request #9152: PreferencesService caches CdmPreferences
I would suggest to add a separator in the cacheKey(key) method to clearly distinguish the subject and the predicate. ... Andreas Müller
03:18 PM feature request #9152 (Feedback): PreferencesService caches CdmPreferences
There was a critical thing missing as the cacheIsComplete was never set to true (and therefore the cache was not real... Andreas Müller
03:05 PM feature request #9152: PreferencesService caches CdmPreferences
This generally seems to work. One issue that is kind of unclear to me:
* is there a reason why you use the treeind...
Andreas Müller
02:46 PM feature request #9188 (Closed): selenium web element wrapper for dynabox
new super class of `BaseElement` with option to click the dynabox.
Use `WebdriverWait` or `FluentWait` to pause the ...
Andreas Kohlbecker
12:00 PM feature request #9134 (Feedback): Rule based creation of additional media representations "on the fly"
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
>
> > * MediaUriTransformationProcessor.calculateTargetSiz...
Andreas Müller
11:37 AM feature request #9134: Rule based creation of additional media representations "on the fly"
Andreas Kohlbecker wrote:
> I modified the code a bit so that there is only one method left which actually modifies ...
Andreas Müller
11:25 AM feature request #9134: Rule based creation of additional media representations "on the fly"
Andreas Müller wrote:
> * MediaToolbox is only logging JsonExceptions but not throwing them. Is this wanted (I am no...
Andreas Müller
11:08 AM feature request #9134: Rule based creation of additional media representations "on the fly"
The class SearchReplace is undocumented.
Also I wonder if we should maybe move it to cdmlib-common as it is context ...
Andreas Müller
10:50 AM feature request #9134: Rule based creation of additional media representations "on the fly"
Andreas Kohlbecker wrote:
> **TODO**: Skip the creation of a MediaRepresentation if a part with exactly the same URL...
Andreas Müller
11:55 AM task #9187 (Duplicate): selenium test for specimen table view
Andreas Kohlbecker
11:54 AM task #9186 (Closed): selenium test for specimen top down view (aka devivate_path view)
Andreas Kohlbecker
11:35 AM feature request #9181 (Closed): set and get drupal variables from selenium test suite
Andreas Kohlbecker
07:38 AM task #8420 (Closed): improve admin settings for specimens representations
variable migration successfully tested on edit-test
Andreas Kohlbecker

08/12/2020

10:03 PM task #8420 (In Progress): improve admin settings for specimens representations
Andreas Kohlbecker
05:54 PM feature request #9065 (Feedback): Add derived unit media to DerivedUnitFacade details view
In the specimen list editor it is now possible to also edit media in the media gallery view. This should not be possi... Andreas Müller
05:26 PM feature request #9065: Add derived unit media to DerivedUnitFacade details view
Generally this seems to work. However, there is an issue:
The new media section is also shown in the specimen tree...
Andreas Müller
05:47 PM feature request #9116 (Feedback): Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
About the new original source section:
* The "detail" field is missing
* There is empty space between "Advanced" ...
Andreas Müller
01:21 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
I will switch back to "In Progress" once I have reviewed this part. Andreas Müller
01:20 PM feature request #9116 (Resolved): Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
Andreas Müller
01:13 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
AM please have a look whether the taxon node details view is ok, in some places the internationalization is still mis... Katja Luther
04:37 PM feature request #9040 (Closed): Implement open button for ORCIDs
seems to work as expected Andreas Müller
04:05 PM bug #9166 (Closed): ClassCastException when editing media in taxon bulkeditor
Seems to work as expected Andreas Müller
03:58 PM bug #9168: NameFeature selection in preferences are not shown
The new code (even the 'cleaned code') contains a lot of commented code. Can we remove this code (or leave a note why... Andreas Müller
03:53 PM bug #9168 (Feedback): NameFeature selection in preferences are not shown
when adding a new name fact (after changing the preferences) I got:
~~~
last remote method : http://test.e-taxono...
Andreas Müller
03:24 PM bug #9171: Doubtful taxa are not found in bulkeditor
Also the implementation for findByTitleWithRestrictions and findByTitle differs a bit in terms of handling "numberOfR... Andreas Müller
03:21 PM bug #9171 (Feedback): Doubtful taxa are not found in bulkeditor
Generally the search works now. But there are the following issues:
* the overriden methods findByTitleWithRestric...
Andreas Müller
03:24 PM bug #9172 (Closed): Missing synchronisation between taxonnode wizard and name editor
Upps, sorry, wrong ticket. Andreas Müller
03:23 PM bug #9172 (Feedback): Missing synchronisation between taxonnode wizard and name editor
~~Also the implementation for findByTitleWithRestrictions and findByTitle differs a bit in terms of handling "numberO... Andreas Müller
02:43 PM bug #9172 (Closed): Missing synchronisation between taxonnode wizard and name editor
Seems to work Andreas Müller
02:49 PM bug #9173: NPE when move synonym into homotypical group of accepted
Andreas Müller wrote:
> I can't reproduce the NPE (but I don't know if I could before).
>
> From the changeset it...
Katja Luther
02:35 PM bug #9173 (Feedback): NPE when move synonym into homotypical group of accepted
I can't reproduce the NPE (but I don't know if I could before).
From the changeset it does not become clear how fa...
Andreas Müller
07:44 AM bug #9185: DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404 HTTP response
can this minor problem be solved by changing the order in DateHeaderFilter.doFilter() like this?
~~~java
@Overrid...
Andreas Kohlbecker
07:17 AM bug #9185 (Closed): DateHeaderFilter.doFilter(..) causes NPE in FrameworkServlet.processRequest(..) on 404 HTTP response
~~~
00:00:05.479 [flora-malesiana] [qtp527446182-27609] INFO e.e.c.r.controller.BaseController - doGetMethod()[doGe...
Andreas Kohlbecker
06:45 AM bug #9184 (In Progress): WSOD in advanced search cdm_dataportal/search
Andreas Kohlbecker
06:45 AM bug #9184 (Closed): WSOD in advanced search cdm_dataportal/search

* http://cichorieae.e-taxonomy.net/portal/cdm_dataportal/search
* http://www.palmweb.org/cdm_dataportal/search
...
Andreas Kohlbecker

08/11/2020

03:23 PM bug #9183: New Registration View: prevent user from continuing to Registration for which permissions are not sufficient
Filtering by restrictions seems to be the root of the problem:
~~~java
Criterion uuidRestriction = Restrictions.i...
Andreas Kohlbecker
02:51 PM bug #9183 (New): New Registration View: prevent user from continuing to Registration for which permissions are not sufficient
Users can select references in the new registration view even if permissions to edit them are not suficcient. Clickin... Andreas Kohlbecker
02:27 PM bug #9171 (Resolved): Doubtful taxa are not found in bulkeditor
this should be fixed, please review. Katja Luther
12:06 PM feature request #9182: Sub-collection and Collection vs. Collection and Super-Collection
done. please review once the test servers updated (12.08.2020) Andreas Kohlbecker
11:24 AM feature request #9182 (Resolved): Sub-collection and Collection vs. Collection and Super-Collection
Applied in changeset commit:cdm-vaadin|d99b930ca98f5b14d402d7fccb356d1e9a6ff589. Andreas Kohlbecker
12:01 PM feature request #8156 (Closed): Registration items show type status in bold letters
Andreas Kohlbecker
12:00 PM feature request #8156 (Resolved): Registration items show type status in bold letters
Applied in changeset commit:cdm-vaadin|0aaa3f0595f5c0414d0e6a2de2ed94d49ffede91. Andreas Kohlbecker
11:32 AM feature request #8196 (Closed): display ortographic corrections in name relations as 'corrected name: <nameCache>'
Andreas Kohlbecker
11:15 AM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
Andreas, can we close this ticket? Andreas Müller
11:18 AM feature request #9065 (Resolved): Add derived unit media to DerivedUnitFacade details view
Katja Luther

08/10/2020

06:40 PM feature request #9182 (Closed): Sub-collection and Collection vs. Collection and Super-Collection
In PhycoBank there are Collections in Herbaria (c. 30%), but only c.2% Collection in Supercollections.
I call a Coll...
Wolf-Henning Kusber
02:54 PM feature request #9177: Make the order in drop down for status and namerelationships configurable
I guess this is a feature many users prefer to have and hope it is not too difficult to implement. Therefore I move i... Andreas Müller
02:53 PM feature request #9177: Make the order in drop down for status and namerelationships configurable
I also think that we do not need a completely new ordering but a "recently used"-list as Walter suggests in #note-2. ... Andreas Müller
02:49 PM feature request #9177: Make the order in drop down for status and namerelationships configurable
KL:
in den drop downs gibt es seit einiger Zeit auch ein pattern matching, wenn du also z.B. „ill“ eingibst, dann ...
Andreas Müller
02:48 PM feature request #9177: Make the order in drop down for status and namerelationships configurable
WGB:
The order of drop down items should be configurable, with the possibility to insert a separator between top i...
Andreas Müller
10:20 AM feature request #9177 (New): Make the order in drop down for status and namerelationships configurable
The order of drop down items should be configurable, therefore we need to think about how to create an UI for definin... Katja Luther
02:34 PM feature request #9181: set and get drupal variables from selenium test suite
fully implemented and teseted Andreas Kohlbecker
02:32 PM feature request #9181 (Resolved): set and get drupal variables from selenium test suite
Applied in changeset commit:cdm-dataportal|20ceff0b10d1079c0463112a482bbe5c51cc54cc. Andreas Kohlbecker
01:57 PM feature request #9181 (Closed): set and get drupal variables from selenium test suite
for testing the dataportal with varying settings it must be possible to modify and check the drupal variables.
Thi...
Andreas Kohlbecker
02:16 PM bug #9171: Doubtful taxa are not found in bulkeditor
As this issue comes up from time to time I put it to the current milestone. Maybe oral discussion is needed. Andreas Müller
02:15 PM bug #9171: Doubtful taxa are not found in bulkeditor
Katja Luther wrote:
> The search is based on the titleCache and the titleCache of doubtful taxa starts with "?", we ...
Andreas Müller
12:40 PM feature request #9040: Implement open button for ORCIDs
this is implemented, please review. Katja Luther
12:40 PM feature request #9040 (Resolved): Implement open button for ORCIDs
Applied in changeset commit:taxeditor|2ab321a1b743b9193d313e9a78ba702c86a2da54. Katja Luther
12:26 PM feature request #9180 (New): Add clickable link to reference detail element
The reference detail element should show also the URL link to avoid opening the details wizard. Katja Luther
12:16 PM feature request #9110 (Closed): Add additional informations to metadata table of cdmLight
Katja Luther
10:29 AM feature request #9179 (New): Add a possibilty to enter a list of taxa
Similar to the possibility to enter a list of synonyms in the nameeditor it should be possible to enter a list of tax... Katja Luther
10:22 AM feature request #9178 (New): Make the name and type of a namerelationship editable
At the moment only rule and reference can be edited for a namerelationship, but also the type and the related name sh... Katja Luther
10:10 AM feature request #9176 (New): New Taxon as own menu item in navigator context menu
The new taxon menu item should be available as own context menu entry to avoid an additional click (new -> taxon).
...
Katja Luther
07:09 AM feature request #8854: Choose new base font size for the portal
Hallo Andreas,

... Ich finde die größeren Zeilenabstände und die größere Schrift gut. Alles ist angenehmer zu les...
Andreas Kohlbecker
07:08 AM feature request #8854: Choose new base font size for the portal
Hallo Andreas,
vielen Dank! Im Cichorieae-Portal empfinde ich die größere Schrift tatsächlich sehr wohltuend und s...
Andreas Kohlbecker
07:07 AM feature request #8854: Choose new base font size for the portal
Hallo,
flora-cuba [Checklist]: Ich habe das Test-Portal mit dem Produktionsportal abgeglichen, jetzt lassen die...
Andreas Kohlbecker
07:07 AM feature request #8854: Choose new base font size for the portal
Hallo,
vielen Dank, es ist wirklich sehr wichtig, dass wir uns um solche „kosmetischen“ Fragen auch kümmern.

...
Andreas Kohlbecker

08/05/2020

01:36 PM feature request #9110 (Resolved): Add additional informations to metadata table of cdmLight
The additional wizard page is ready, too. Katja Luther
01:07 PM feature request #9110: Add additional informations to metadata table of cdmLight
The changes in cdmlib are done. Katja Luther
01:07 PM feature request #9110 (In Progress): Add additional informations to metadata table of cdmLight
Katja Luther

08/04/2020

02:48 PM feature request #9065 (In Progress): Add derived unit media to DerivedUnitFacade details view
Katja Luther

08/03/2020

02:58 PM task #9138 (Closed): Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId()
Added working unit IDs and close this ticket. Katja Luther
02:35 PM task #9138 (Resolved): Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId()
Applied in changeset commit:cdmlib|bac9135c77b531f4541bb1b2bc9f5f921644f080. Katja Luther
01:54 PM bug #9172 (Resolved): Missing synchronisation between taxonnode wizard and name editor
Now there is a check for changes before opening the taxonnode wizard and after closing the node wizard the name edito... Katja Luther
12:43 PM bug #9173 (Resolved): NPE when move synonym into homotypical group of accepted
this should be fixed because the method call causing the NPE is not used anymore. Please review. Katja Luther

07/31/2020

02:52 PM bug #9175 (Closed): hide occurrence map when no data exists
Andreas Kohlbecker
01:58 PM bug #9175 (Resolved): hide occurrence map when no data exists
Applied in changeset commit:cdm-dataportal|d8e5f1be0d95922b6aa1a1678d590eeff6e7599c. Andreas Kohlbecker
11:33 AM bug #9175 (Closed): hide occurrence map when no data exists
example :
http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/name/3a6d4bf2-5c89-4525-9e87...
Andreas Kohlbecker

07/30/2020

05:34 PM bug #9109: Search button font icon broken
this is fixed.
please review: http://test.e-taxonomy.eu/dataportal/preview/phycobank/
Andreas Kohlbecker
05:33 PM bug #9109 (Resolved): Search button font icon broken
Applied in changeset commit:cdm-dataportal|c8624e9a3f2aad086b48465b0ce3636e30631be7. Andreas Kohlbecker
05:29 PM bug #9109 (In Progress): Search button font icon broken
This is an issue in all browsers and OS.
I could not see it instantly since fontawesome in installed in my laptop ...
Andreas Kohlbecker
03:16 PM bug #9087 (Resolved): typedesignation/{uuid}/annotations must return pager objects
should be fully fixed.
before closing disable in ` eu.etaxonomy.dataportal.pages.PortalPage.pageHealthChecks()` :
...
Andreas Kohlbecker
02:00 PM bug #9173: NPE when move synonym into homotypical group of accepted
Now I could reproduce the problem. If the setting of the focus is not done, the NPE appears. Katja Luther
12:41 PM bug #9173 (Closed): NPE when move synonym into homotypical group of accepted
Hallo,
beim Verschieben in die homot. Gruppe des Taxons, nachdem das Synonym von einem anderen Taxon hierher vorscho...
Katja Luther
01:11 PM bug #9171: Doubtful taxa are not found in bulkeditor
The search is based on the titleCache and the titleCache of doubtful taxa starts with "?", we should search on the ti... Katja Luther
11:46 AM bug #9171 (Closed): Doubtful taxa are not found in bulkeditor
merkwürdig. Ich bin im Bulk Editor für Taxa und suche (eigentlich) nach Obione chilensis. Folgendes Ergebnis:
![]...
Katja Luther
12:44 PM bug #9174 (Duplicate): After longer inactivity NPE for cache
WGB:
... Wenn ich längere Zeit keinen Neustart des Editors gemacht habe (z.B. meinen Rechner über Nacht nur in Hyb...
Katja Luther
12:21 PM bug #8591: Multiple representations problem on setting synonym as basionym
Hallo,
beim Verschieben eines Synonyms von einer h. Gruppe in die andere.
Taxon mit sehr vielen Synonymen (Conophyt...
Katja Luther
12:11 PM bug #9172 (Closed): Missing synchronisation between taxonnode wizard and name editor
When a taxonnode is updated which is already opened in name editor, the node information is not updated in name edito... Katja Luther
11:36 AM feature request #9170 (New): DISCUSS: Workflow for 'Make taxon a synonym of another taxon'
mail WB:
wenn man aus dem TaxonNavigator ein Taxon zu einem Synonym erklärt wird dem neuen Synonym automatisch die...
Katja Luther
09:29 AM bug #2602 (Worksforme): Taxon synonymy: type designation footnotes rendered together with taxon_page_synonymy footnotes
this has been solved already earlier Andreas Kohlbecker
09:28 AM bug #4964 (New): footnotes for taxonRelationship sources and annotations should be rendered together
Andreas Kohlbecker
09:27 AM bug #4964 (Worksforme): footnotes for taxonRelationship sources and annotations should be rendered together
Andreas Kohlbecker
09:21 AM task #8543 (Closed): overcome distinction of annotation and other foonotes
verified by test and checking the result of the drupal dbupdate Andreas Kohlbecker
09:12 AM task #8543: overcome distinction of annotation and other foonotes
completed Andreas Kohlbecker
09:03 AM task #8543 (In Progress): overcome distinction of annotation and other foonotes
Andreas Kohlbecker

07/29/2020

04:32 PM feature request #9169 (New): Check whether the class TermEditorInput is still needed
Katja Luther
04:32 PM bug #9168 (Resolved): NameFeature selection in preferences are not shown
Applied in changeset commit:taxeditor|0881e7341dea9cd5127bccae6473439442ac8814. Katja Luther
04:28 PM bug #9168 (New): NameFeature selection in preferences are not shown
Both issues are solved, please review Katja Luther
03:08 PM bug #9168 (Resolved): NameFeature selection in preferences are not shown
Applied in changeset commit:taxeditor|1e1ccbfcfc9f8d45eb9f30fc08ad7eee51ce7282. Katja Luther
03:07 PM bug #9168 (Closed): NameFeature selection in preferences are not shown
The preference of the selected name features are not shown in the preference page, this is because the checkedElement... Katja Luther
01:29 PM bug #9167 (New): place "fact" footnote key after fact title
e.g.: see footnote key on citations in http://int.e-taxonomy.eu/dataportal/integration/cichorieae/cdm_dataportal/taxo... Andreas Kohlbecker
11:40 AM bug #9166: ClassCastException when editing media in taxon bulkeditor
This exception was thrown because the correct handling of the change event for media was missing, this is fixed now.
...
Katja Luther
11:31 AM bug #9166 (Resolved): ClassCastException when editing media in taxon bulkeditor
Applied in changeset commit:taxeditor|adea4e3df7091422f3341c56efdcca5231b5e7e3. Katja Luther
11:29 AM bug #9166 (Closed): ClassCastException when editing media in taxon bulkeditor
while editing media of a taxon in bulkeditor the following exception appears:
~~~
last remote method : http://l...
Katja Luther
11:00 AM feature request #4372 (Closed): Selenium PortalPage class also suitable for zen-basetheme
Andreas Kohlbecker
07:10 AM feature request #3907: EuroMed: implement condensed "status" string of distribution information
Hallo,
aus meiner Sicht wurde das noch nicht abschließend bearbeitet. Der condensed string ist immer noch fehler...
Andreas Kohlbecker

07/28/2020

04:50 PM task #9165: Eroneous registrations, published
Wolf-Henning Kusber wrote:
> Beschreibung:
> Fall 1: Eine Registrierung, die nicht öffentlich gemacht werden soll (...
Wolf-Henning Kusber
01:47 PM task #9165 (Feedback): Eroneous registrations, published
Beschreibung:
Fall 1: Eine Registrierung, die nicht öffentlich gemacht werden soll (Duplikat, Neubeschreibung, die i...
Wolf-Henning Kusber
01:49 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
Please review if this ticket still is an open issue.
If not, it would make sense splitting of the remaining tasks ...
Andreas Kohlbecker
11:23 AM bug #9028: Endless loop when opening the context menu of name facts
the problem occured again:
Hallo,
beim Eingeben/ Anlegen eines Name-Facts. Die Eingabe des Textes ist enorm langs...
Katja Luther

07/27/2020

10:51 AM feature request #8850 (Resolved): Show annotations for DerivedUnits (Fieldunits etc) in Registration and other pages
this is solved completely. In contrast the original suggestion, I put the footnote into the registration block, since... Andreas Kohlbecker

07/24/2020

11:51 AM bug #2602: Taxon synonymy: type designation footnotes rendered together with taxon_page_synonymy footnotes
can be solved by setting the `$footnote_list_key_suggestion` parameter of `handle_annotations_and_sources()` explicit... Andreas Kohlbecker
11:51 AM bug #4964: footnotes for taxonRelationship sources and annotations should be rendered together
can be solved by setting the `$footnote_list_key_suggestion` parameter of `handle_annotations_and_sources()` explicit... Andreas Kohlbecker
08:42 AM bug #9164: occurrence maps do not resprect max zoom level
none of the tips in https://stackoverflow.com/questions/4240610/min-max-zoom-level-in-openlayers#4240724 did help so far Andreas Kohlbecker
07:54 AM bug #9164 (New): occurrence maps do not resprect max zoom level
even if the max zomm level is set to 16 occurrence maps allow for zoom levels beyond leading to broken maps. Andreas Kohlbecker

07/23/2020

05:01 PM feature request #8317: Omit ex-author if ex-author=author
I checked the update. For new entrys it is fully functionalble.
For already used names there was no automatic update...
Wolf-Henning Kusber
01:32 PM feature request #8317 (Resolved): Omit ex-author if ex-author=author
The integration server was hung, so the update was not distributed to the test system.
I locally tested the creati...
Andreas Kohlbecker
01:15 PM feature request #8317 (In Progress): Omit ex-author if ex-author=author
Wolf-Henning Kusber wrote:
> Portal view as of 23 July 2020 (Test and Production). In both portals the validated des...
Andreas Kohlbecker
12:22 PM feature request #8317: Omit ex-author if ex-author=author
Portal view as of 23 July 2020 (Test and Production). In both portals the validated designation (= invalid name) was ... Wolf-Henning Kusber
08:37 AM bug #7895: registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in RegistrationWorkingSet
I was selecting "Target version" = NONE and obviously missed the correct option. Andreas Kohlbecker

07/22/2020

11:58 PM task #9163 (Closed): Remove redundant exclude notes for Flora of Greece
Andreas Müller
11:58 PM task #9163 (Resolved): Remove redundant exclude notes for Flora of Greece
Applied in changeset commit:cdmlib-apps|2d1cf56bd48df49359a90fd4c4158f1febb5fe3c. Andreas Müller
11:54 PM task #9163 (Closed): Remove redundant exclude notes for Flora of Greece
Andreas Müller
09:19 PM bug #7895: registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in RegistrationWorkingSet
Is there a reason why you changed the target version to Fauna Europaea Portal Release?
The fixed ticket belongs to 5.9.
Andreas Müller
01:10 PM bug #7895 (Worksforme): registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in RegistrationWorkingSet
this has already been fixed by commit:6b0f8cd Andreas Kohlbecker
03:14 PM feature request #8317: Omit ex-author if ex-author=author
Solved and tested.
Please review.
For fixing the wrong data in the production system you may want to edit the a...
Andreas Kohlbecker
03:13 PM feature request #8317 (Resolved): Omit ex-author if ex-author=author
Applied in changeset commit:cdm-vaadin|ff522f12a377c61ee737ebfa2f4f5cbc95398200. Andreas Kohlbecker
02:07 PM feature request #8230 (Closed): NameTypePopupEditor: genus selectable as the name type for higher ranks
Example: http://phycobank.org/102321 (worked perfectly)
Currently no problems. Close this ticket and will only reope...
Wolf-Henning Kusber
01:35 PM feature request #8230 (Feedback): NameTypePopupEditor: genus selectable as the name type for higher ranks
I have no problems selecting a genus as type name for a family:
![](picture817-1.png)
Also from looking into th...
Andreas Kohlbecker
12:43 PM task #9105 (Closed): rename NodeSortMode etc to TaxonNodeSortMode
Andreas Kohlbecker
12:15 PM bug #9162 (Worksforme): Registration page: Typedesignation missing
Apparently the server was hung. After rebooting the server the type designation is shown again: http://test.e-taxonom... Andreas Kohlbecker
08:58 AM bug #9162 (Worksforme): Registration page: Typedesignation missing
hier ist die Ausgabe im Testportal zu 102157:
![](picture329-1.png)
Andreas Kohlbecker
08:41 AM task #9161: E+M shapefile with Kaukasus regions
Hallo,

In der DB (cdm_production)_euromed_caucasus befindet sich das Vokabular (E+M Caucasus Areas)
mit den ...
Andreas Kohlbecker
08:40 AM task #9161 (New): E+M shapefile with Kaukasus regions
Wir brauchen dafür aber keine politischen, sondern pflanzengeografische Regionen. In der Kaukasus-Instanz müssten die... Andreas Kohlbecker

07/21/2020

04:24 PM bug #8310 (Resolved): Issues to solve in E+M shapefile
I consider this as fully completed. Andreas Kohlbecker
04:23 PM bug #8310: Issues to solve in E+M shapefile
The latest run of the mapping service on edit-test (updated to the latest state of the production system) now reports... Andreas Kohlbecker
03:42 PM bug #8310: Issues to solve in E+M shapefile
Hallo,
ich habe die Name area labels jetzt teilweise umbenannt, so wie es mir sinnvoll erschien. Ob die Shapefil...
Andreas Kohlbecker
03:41 PM bug #8310: Issues to solve in E+M shapefile
Hallo,

zu den Arealen in den Shapefiles:
ich denke, grundsätzlich ist das jetzt richtig. Es sollte für alle ...
Andreas Kohlbecker
03:41 PM bug #8310: Issues to solve in E+M shapefile
[Eckard wrote:]
Hallo Andreas,
also, ich denke nicht, dass die Kartenanzeige noch sehr im Fluss und häufigen ...
Andreas Kohlbecker

07/20/2020

05:56 PM bug #8310: Issues to solve in E+M shapefile
Hallo,
ja, wenn für Transcaucasia (Tcs) ein gemeinsames Polygon ohne Ländergrenzen geschaffen werden kann, ist das...
Andreas Kohlbecker
05:55 PM bug #8310: Issues to solve in E+M shapefile
Andreas Kohlbecker in email from Freitag, 10. Juli 2020 11:45:03:
Betrachten wir zum Beispiel den Fall Transcaucas...
Andreas Kohlbecker
03:07 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
I modified the small thumbnails images with following sql statement:
~~~sql
UPDATE MediaRepresentationPart p set...
Andreas Kohlbecker
02:21 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
Ralf voted for cropping the images (Email from 16.07.20 17:58)
Andreas Kohlbecker
02:05 PM feature request #9134 (Resolved): Rule based creation of additional media representations "on the fly"
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> > Using media clones can also ...
Andreas Kohlbecker
02:05 PM task #9160 (New): Avoid modified media entities in IMediaToolbox.filterPreferredMediaRepresentations()
see #9134#note-15 for in depth details.
The best solution would be to use MediaDTOs
Andreas Kohlbecker
11:57 AM feature request #9152 (Resolved): PreferencesService caches CdmPreferences
Andreas Kohlbecker
11:57 AM feature request #9152: PreferencesService caches CdmPreferences
I implemented the service level cache for cdm preferences with locking mechanism.
Please review carefully.
Andreas Kohlbecker
11:30 AM feature request #9152: PreferencesService caches CdmPreferences
Caching CdmPreferences at the service class level is not straight forward and picked with a couple of pitfalls:
1....
Andreas Kohlbecker
10:05 AM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
The new map layer is now available:
http://edit.africamuseum.be/geoserver/topp/wms?service=WMS&version=1.1.0&requ...
Andreas Kohlbecker
 

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