Activity
From 07/02/2020 to 07/31/2020
07/31/2020
- 02:52 PM bug #9175 (Closed): hide occurrence map when no data exists
- 01:58 PM bug #9175 (Resolved): hide occurrence map when no data exists
- Applied in changeset commit:cdm-dataportal|d8e5f1be0d95922b6aa1a1678d590eeff6e7599c.
- 11:33 AM bug #9175 (Closed): hide occurrence map when no data exists
- example :
http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/name/3a6d4bf2-5c89-4525-9e87...
07/30/2020
- 05:34 PM bug #9109: Search button font icon broken
- this is fixed.
please review: http://test.e-taxonomy.eu/dataportal/preview/phycobank/
- 05:33 PM bug #9109 (Resolved): Search button font icon broken
- Applied in changeset commit:cdm-dataportal|c8624e9a3f2aad086b48465b0ce3636e30631be7.
- 05:29 PM bug #9109 (In Progress): Search button font icon broken
- This is an issue in all browsers and OS.
I could not see it instantly since fontawesome in installed in my laptop ... - 03:16 PM bug #9087 (Resolved): typedesignation/{uuid}/annotations must return pager objects
- should be fully fixed.
before closing disable in ` eu.etaxonomy.dataportal.pages.PortalPage.pageHealthChecks()` :
... - 02:00 PM bug #9173: NPE when move synonym into homotypical group of accepted
- Now I could reproduce the problem. If the setting of the focus is not done, the NPE appears.
- 12:41 PM bug #9173 (Closed): NPE when move synonym into homotypical group of accepted
- Hallo,
beim Verschieben in die homot. Gruppe des Taxons, nachdem das Synonym von einem anderen Taxon hierher vorscho... - 01:11 PM bug #9171: Doubtful taxa are not found in bulkeditor
- The search is based on the titleCache and the titleCache of doubtful taxa starts with "?", we should search on the ti...
- 11:46 AM bug #9171 (Closed): Doubtful taxa are not found in bulkeditor
- merkwürdig. Ich bin im Bulk Editor für Taxa und suche (eigentlich) nach Obione chilensis. Folgendes Ergebnis:
![]... - 12:44 PM bug #9174 (Duplicate): After longer inactivity NPE for cache
- WGB:
... Wenn ich längere Zeit keinen Neustart des Editors gemacht habe (z.B. meinen Rechner über Nacht nur in Hyb... - 12:21 PM bug #8591: Multiple representations problem on setting synonym as basionym
- Hallo,
beim Verschieben eines Synonyms von einer h. Gruppe in die andere.
Taxon mit sehr vielen Synonymen (Conophytum... - 12:11 PM bug #9172 (Closed): Missing synchronisation between taxonnode wizard and name editor
- When a taxonnode is updated which is already opened in name editor, the node information is not updated in name edito...
- 11:36 AM feature request #9170 (New): DISCUSS: Workflow for 'Make taxon a synonym of another taxon'
- mail WB:
wenn man aus dem TaxonNavigator ein Taxon zu einem Synonym erklärt wird dem neuen Synonym automatisch die... - 09:29 AM bug #2602 (Worksforme): Taxon synonymy: type designation footnotes rendered together with taxon_page_synonymy footnotes
- this has been solved already earlier
- 09:28 AM bug #4964 (New): footnotes for taxonRelationship sources and annotations should be rendered together
- 09:27 AM bug #4964 (Worksforme): footnotes for taxonRelationship sources and annotations should be rendered together
- 09:21 AM task #8543 (Closed): overcome distinction of annotation and other foonotes
- verified by test and checking the result of the drupal dbupdate
- 09:12 AM task #8543: overcome distinction of annotation and other foonotes
- completed
- 09:03 AM task #8543 (In Progress): overcome distinction of annotation and other foonotes
07/29/2020
- 04:32 PM feature request #9169 (New): Check whether the class TermEditorInput is still needed
- 04:32 PM bug #9168 (Resolved): NameFeature selection in preferences are not shown
- Applied in changeset commit:taxeditor|0881e7341dea9cd5127bccae6473439442ac8814.
- 04:28 PM bug #9168 (New): NameFeature selection in preferences are not shown
- Both issues are solved, please review
- 03:08 PM bug #9168 (Resolved): NameFeature selection in preferences are not shown
- Applied in changeset commit:taxeditor|1e1ccbfcfc9f8d45eb9f30fc08ad7eee51ce7282.
- 03:07 PM bug #9168 (Closed): NameFeature selection in preferences are not shown
- The preference of the selected name features are not shown in the preference page, this is because the checkedElement...
- 01:29 PM bug #9167 (New): place "fact" footnote key after fact title
- e.g.: see footnote key on citations in http://int.e-taxonomy.eu/dataportal/integration/cichorieae/cdm_dataportal/taxo...
- 11:40 AM bug #9166: ClassCastException when editing media in taxon bulkeditor
- This exception was thrown because the correct handling of the change event for media was missing, this is fixed now.
... - 11:31 AM bug #9166 (Resolved): ClassCastException when editing media in taxon bulkeditor
- Applied in changeset commit:taxeditor|adea4e3df7091422f3341c56efdcca5231b5e7e3.
- 11:29 AM bug #9166 (Closed): ClassCastException when editing media in taxon bulkeditor
- while editing media of a taxon in bulkeditor the following exception appears:
~~~
last remote method : http://l... - 11:00 AM feature request #4372 (Closed): Selenium PortalPage class also suitable for zen-basetheme
- 07:10 AM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- Hallo,
aus meiner Sicht wurde das noch nicht abschließend bearbeitet. Der condensed string ist immer noch fehler...
07/28/2020
- 04:50 PM task #9165: Eroneous registrations, published
- Wolf-Henning Kusber wrote:
> Beschreibung:
> Fall 1: Eine Registrierung, die nicht öffentlich gemacht werden soll (... - 01:47 PM task #9165 (Feedback): Eroneous registrations, published
- Beschreibung:
Fall 1: Eine Registrierung, die nicht öffentlich gemacht werden soll (Duplikat, Neubeschreibung, die i... - 01:49 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- Please review if this ticket still is an open issue.
If not, it would make sense splitting of the remaining tasks ... - 11:23 AM bug #9028: Endless loop when opening the context menu of name facts
- the problem occured again:
Hallo,
beim Eingeben/ Anlegen eines Name-Facts. Die Eingabe des Textes ist enorm langs...
07/27/2020
- 10:51 AM feature request #8850 (Resolved): Show annotations for DerivedUnits (Fieldunits etc) in Registration and other pages
- this is solved completely. In contrast the original suggestion, I put the footnote into the registration block, since...
07/24/2020
- 11:51 AM bug #2602: Taxon synonymy: type designation footnotes rendered together with taxon_page_synonymy footnotes
- can be solved by setting the `$footnote_list_key_suggestion` parameter of `handle_annotations_and_sources()` explicit...
- 11:51 AM bug #4964: footnotes for taxonRelationship sources and annotations should be rendered together
- can be solved by setting the `$footnote_list_key_suggestion` parameter of `handle_annotations_and_sources()` explicit...
- 08:42 AM bug #9164: occurrence maps do not resprect max zoom level
- none of the tips in https://stackoverflow.com/questions/4240610/min-max-zoom-level-in-openlayers#4240724 did help so far
- 07:54 AM bug #9164 (New): occurrence maps do not resprect max zoom level
- even if the max zomm level is set to 16 occurrence maps allow for zoom levels beyond leading to broken maps.
07/23/2020
- 05:01 PM feature request #8317: Omit ex-author if ex-author=author
- I checked the update. For new entrys it is fully functionalble.
For already used names there was no automatic update... - 01:32 PM feature request #8317 (Resolved): Omit ex-author if ex-author=author
- The integration server was hung, so the update was not distributed to the test system.
I locally tested the creati... - 01:15 PM feature request #8317 (In Progress): Omit ex-author if ex-author=author
- Wolf-Henning Kusber wrote:
> Portal view as of 23 July 2020 (Test and Production). In both portals the validated des... - 12:22 PM feature request #8317: Omit ex-author if ex-author=author
- Portal view as of 23 July 2020 (Test and Production). In both portals the validated designation (= invalid name) was ...
- 08:37 AM bug #7895: registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in RegistrationWorkingSet
- I was selecting "Target version" = NONE and obviously missed the correct option.
07/22/2020
- 11:58 PM task #9163 (Closed): Remove redundant exclude notes for Flora of Greece
- 11:58 PM task #9163 (Resolved): Remove redundant exclude notes for Flora of Greece
- Applied in changeset commit:cdmlib-apps|2d1cf56bd48df49359a90fd4c4158f1febb5fe3c.
- 11:54 PM task #9163 (Closed): Remove redundant exclude notes for Flora of Greece
- 09:19 PM bug #7895: registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in RegistrationWorkingSet
- Is there a reason why you changed the target version to Fauna Europaea Portal Release?
The fixed ticket belongs to 5.9. - 01:10 PM bug #7895 (Worksforme): registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in RegistrationWorkingSet
- this has already been fixed by commit:6b0f8cd
- 03:14 PM feature request #8317: Omit ex-author if ex-author=author
- Solved and tested.
Please review.
For fixing the wrong data in the production system you may want to edit the a... - 03:13 PM feature request #8317 (Resolved): Omit ex-author if ex-author=author
- Applied in changeset commit:cdm-vaadin|ff522f12a377c61ee737ebfa2f4f5cbc95398200.
- 02:07 PM feature request #8230 (Closed): NameTypePopupEditor: genus selectable as the name type for higher ranks
- Example: http://phycobank.org/102321 (worked perfectly)
Currently no problems. Close this ticket and will only reope... - 01:35 PM feature request #8230 (Feedback): NameTypePopupEditor: genus selectable as the name type for higher ranks
- I have no problems selecting a genus as type name for a family:
![](picture817-1.png)
Also from looking into th... - 12:43 PM task #9105 (Closed): rename NodeSortMode etc to TaxonNodeSortMode
- 12:15 PM bug #9162 (Worksforme): Registration page: Typedesignation missing
- Apparently the server was hung. After rebooting the server the type designation is shown again: http://test.e-taxonom...
- 08:58 AM bug #9162 (Worksforme): Registration page: Typedesignation missing
- hier ist die Ausgabe im Testportal zu 102157:
![](picture329-1.png) - 08:41 AM task #9161: E+M shapefile with Kaukasus regions
- Hallo,
In der DB (cdm_production)_euromed_caucasus befindet sich das Vokabular (E+M Caucasus Areas)
mit den ... - 08:40 AM task #9161 (Rejected): E+M shapefile with Kaukasus regions
- Wir brauchen dafür aber keine politischen, sondern pflanzengeografische Regionen. In der Kaukasus-Instanz müssten die...
07/21/2020
- 04:24 PM bug #8310 (Resolved): Issues to solve in E+M shapefile
- I consider this as fully completed.
- 04:23 PM bug #8310: Issues to solve in E+M shapefile
- The latest run of the mapping service on edit-test (updated to the latest state of the production system) now reports...
- 03:42 PM bug #8310: Issues to solve in E+M shapefile
- Hallo,
ich habe die Name area labels jetzt teilweise umbenannt, so wie es mir sinnvoll erschien. Ob die Shapefil... - 03:41 PM bug #8310: Issues to solve in E+M shapefile
- Hallo,
zu den Arealen in den Shapefiles:
ich denke, grundsätzlich ist das jetzt richtig. Es sollte für alle ... - 03:41 PM bug #8310: Issues to solve in E+M shapefile
- [Eckard wrote:]
Hallo Andreas,
also, ich denke nicht, dass die Kartenanzeige noch sehr im Fluss und häufigen ...
07/20/2020
- 05:56 PM bug #8310: Issues to solve in E+M shapefile
- Hallo,
ja, wenn für Transcaucasia (Tcs) ein gemeinsames Polygon ohne Ländergrenzen geschaffen werden kann, ist das... - 05:55 PM bug #8310: Issues to solve in E+M shapefile
- Andreas Kohlbecker in email from Freitag, 10. Juli 2020 11:45:03:
Betrachten wir zum Beispiel den Fall Transcaucas... - 03:07 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- I modified the small thumbnails images with following sql statement:
~~~sql
UPDATE MediaRepresentationPart p set... - 02:21 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Ralf voted for cropping the images (Email from 16.07.20 17:58)
- 02:05 PM feature request #9134 (Resolved): Rule based creation of additional media representations "on the fly"
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> > Using media clones can also ... - 02:05 PM task #9160 (New): Avoid modified media entities in IMediaToolbox.filterPreferredMediaRepresentations()
- see #9134#note-15 for in depth details.
The best solution would be to use MediaDTOs
- 11:57 AM feature request #9152 (Resolved): PreferencesService caches CdmPreferences
- 11:57 AM feature request #9152: PreferencesService caches CdmPreferences
- I implemented the service level cache for cdm preferences with locking mechanism.
Please review carefully.
- 11:30 AM feature request #9152: PreferencesService caches CdmPreferences
- Caching CdmPreferences at the service class level is not straight forward and picked with a couple of pitfalls:
1.... - 10:05 AM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- The new map layer is now available:
http://edit.africamuseum.be/geoserver/topp/wms?service=WMS&version=1.1.0&requ...
07/17/2020
- 09:34 AM bug #9157 (In Progress): Further improve deduplication of names
- 09:11 AM bug #9157 (In Progress): Further improve deduplication of names
- copied from #9085
* ~~make parsing of articles and book sections stricter (only EQUAL allowed) to guarantee identi... - 09:22 AM feature request #9159 (New): Add page matching to parsed reference matching
- Parsed references usually have a detail page. This can be used to identify articles and book sections if existing mat...
- 09:19 AM feature request #9158 (New): Handle identiy matching in matching framework
- XXX_OR_xxx_NULL usually requires that at least 1 other parameter guarantees the identity of the 2 matching objects.
... - 09:13 AM feature request #9085 (Closed): Improve deduplication of parsed names
- Open issues moved to #9157
07/16/2020
- 11:50 PM bug #9156 (New): Searching for a taxon in the PolytomousKey perspective results in AssertionFailure
- using the simple taxon search
~~~
last remote method : http://api.cybertaxonomy.org:80/cyprus/remoting/polytomous... - 10:19 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
- Example:
http://phycobank.org/100005
correct: Planothidium victorii
to be corrected: Planothidium victori
The... - 08:02 PM feature request #8196 (Resolved): display ortographic corrections in name relations as 'corrected name: <nameCache>'
- 02:10 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
- I now changed `label` and `text` of the according term representation (1cbb3aac-afec-4770-bc59-006f20d65e0e') to "cor...
- 08:48 PM bug #9147 (Closed): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- With the final adaption of its subject this ticket is fully solved.
Code is perfect. - 06:14 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- the fixed default transformations as json for reference:
~~~json
[ {
"scheme" : null,
"host" : {
"repl... - 06:13 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Müller wrote:
>
> > "width" : 200,
> > "height" : 200
> > if we use &mo=crop&dw=200&dh=**147**
>
> s... - 05:56 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Müller wrote:
> * MediaUriTransformationProcessor.calculateTargetSize() does not handle maxextend trans... - 04:42 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> I implemented all of your suggestions and discovered a bug ... - 04:28 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> Using media clones can also cause problems: Rest service cl... - 04:09 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Does it make sense to use
> >
> > "width" : 200,
> > ... - 03:53 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Müller wrote:
> Does it make sense to use
>
> "width" : 200,
> "height" : 200
>
> if we use &mo=... - 03:50 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Müller wrote:
> ...
> * The MediaToolbox methods change the media itself by adding or removing representa... - 03:39 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Does it make sense to use
"width" : 200,
"height" : 200
if we use &mo=crop&dw=200&dh=**147**
Do we ne... - 01:00 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- new default transformation for digilib:
~~~json
[ {
"scheme" : null,
"host" : {
"replace" : "pictures.... - 08:36 AM feature request #8854 (In Progress): Choose new base font size for the portal
- I modified the font setting and send an email to the BGBM users to gather feedback
- 08:08 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Andreas Müller wrote:
> The above problems are all solved and discussed with Ralf so I guess we can close this ticke...
07/15/2020
- 07:40 PM feature request #9153: Handle additional information in image metadata
- As the remaining issue is related to a ticket implemented by AK I pass this ticket to AK.
If the new parameter sti... - 03:01 PM feature request #9153: Handle additional information in image metadata
- ... and existing image files need to be adapted.
- 03:01 PM feature request #9153: Handle additional information in image metadata
- Andreas Müller wrote:
> This should be implemented for imports and metadata reading.
For imports and metadata rea... - 02:54 PM feature request #9153: Handle additional information in image metadata
- RH:
Bei Bromus fasciculatus delilei (Fall bei Dir hinten unten) finde ich keine Lösung. Bei den Bildern gibt es au... - 02:50 PM feature request #9153 (New): Handle additional information in image metadata
- In rare cases the images on the image server as used for cyprus and cichorieae(?) include some more information addti...
- 07:32 PM task #9155 (Closed): Update of used person names
- 07:23 PM task #9155 (Closed): Update of used person names
- Example: more than one author with family name "Zhang" was set to Abbrv. Title = "Zhang"
Zhang, W. was used for an a... - 07:31 PM task #9132 (Resolved): Update cyprus images to Scaler default API and add thumbnails
- The above problems are all solved and discussed with Ralf so I guess we can close this ticket.
- 07:29 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- I updated data in cyprus
~~~
UPDATE MediaRepresentationPart p
SET uri = Concat(uri, '&uvfix=1')
WHERE p.uri LIK... - 04:30 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- The Universalviewer appends `?t={some-hash}` to the image URI. By this the links to the scaler api become invalid an...
- 04:14 PM feature request #9154: Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional
- AM:
wurde eingentlich mal diskutiert, ob man taxeditor.webapp nicht automatisch mit anbietet sondern als nachladba... - 03:48 PM feature request #9154: Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional
- Issue from #5752: Datasource view could be moved to taxeditor.webapp as it is only relevant together with it. (togeth...
- 03:43 PM feature request #9154 (New): Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional
- this is a follow up ticket for #5752
* remove and upgrade dependencies (mostly from taxeditor.cdmlib) (#9204)
* m... - 03:46 PM feature request #5752 (Resolved): Reduce TaxEditor size
- Many improvements have been done in this ticket. For further improvements a follow up ticket exists: #9154
Open is... - 03:41 PM feature request #5752: Reduce TaxEditor size
- cdmlib-remote-webapp is now removed from taxeditor.cdmlib which reduces the size of TaxEditor about 115 MB
- 03:24 PM bug #8814: Clean implementation for permissions with combination of Taxonnode and other permissions
- Assignee was missing for this ticket therefore it was moved to next milestone or closed in old milestone.
If this ... - 03:03 PM feature request #9146: filter image metadata by include and exclude lists of key words
- Please also have a look at #9153 when defining the default includes list
- 02:32 PM feature request #9152 (Closed): PreferencesService caches CdmPreferences
- implement as static private Map<String,String>
once the methods `public void set(CdmPreference preference)` or `pu... - 02:28 PM feature request #8989: Implement flowering periods (temporal facts) in dataportal
- As we do now already have data in production (uzbekistan) this should be implemented asap
e.g. http://portal.cybe... - 02:21 PM bug #9126 (Closed): Import Flora of Uzbekistan phenology data
- 02:20 PM bug #9126 (Resolved): Import Flora of Uzbekistan phenology data
- Applied in changeset commit:cdmlib|60451921a5902b944295844f9cb5156586971864.
07/14/2020
- 09:23 PM bug #5710: Changing the database connection must reset all caches
- Can you please test the results of the latest changes and see if the problem still exists by testing with data relate...
- 09:17 PM task #9119 (Feedback): Remove schema create and schema update functionality from datsource view
- The result looks fine. Only I wonder if we can also remove the the code that was called before to not have dead code....
- 09:14 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- There is one issue that needs to be solved:
* MediaToolbox.readTransformations is creating default preference valu... - 09:12 PM feature request #9134 (Feedback): Rule based creation of additional media representations "on the fly"
- As far as I can see this works well.
Some minor issues:
* The MediaToolbox methods change the media itself by a... - 06:01 PM feature request #9146: filter image metadata by include and exclude lists of key words
- I don't know if this is handled in this ticket or in another one. But the current implementation does not yet handle ...
- 05:52 PM feature request #9146 (Feedback): filter image metadata by include and exclude lists of key words
- Code looks fine and tests run so I guess it works, though no tests exist for "excludes".
I only have 2 architectur... - 05:12 PM bug #9151 (Closed): invalid pager information in /description/namedAreasInUse webservice
e.g.:
~~~json
http http://api.cybertaxonomy.org/euromed/description/namedAreasInUse includeAllParents==true pag...- 04:48 PM feature request #9137: IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
- I hope this is fixed now. Can you please review?
- 04:40 PM bug #9143 (Feedback): Distribution data sources are missing if multiple distributions exist
- 04:40 PM bug #9143: Distribution data sources are missing if multiple distributions exist
- The problem is already described in #4366. However, there it is handled as pure data aggregation (transmission engine...
- 04:17 PM feature request #4366 (Duplicate): Transmissionengine Distribution: implement rules for source references
- Close as duplicate for #8672 which is more general
- 04:13 PM bug #4134 (Closed): Transmissionengine Distribution seems to miss distributions for higher Taxa
- 03:38 PM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Andreas Kohlbecker wrote:
> When writing tests to compare the performance of `+` with `StringBuilder` or `StringBuff... - 03:22 PM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Interesting. I didn't know about the differences between StringBuilder and StringBuffer. I adapted the code according...
- 03:20 PM bug #9147 (Resolved): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Applied in changeset commit:cdmlib|63b2dbdb54bc105a8fa615e36eb754eeed6d3596.
- 12:54 PM bug #9147 (Feedback): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Andreas Müller wrote:
> I changed the method to use StringBuffer now.
>
> However, I tested the performance diff... - 09:52 AM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- I changed the method to use StringBuffer now.
However, I tested the performance difference and it is true that us... - 09:46 AM bug #9147 (Resolved): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Applied in changeset commit:cdmlib|8ab5e47c6a6ca132f2e495900c3bdfc7743d69c8.
- 01:03 PM task #9150 (New): Test if the overriding of setTitleCache in Media class makes really sense
- This has been implemented by NH 10 years ago. It might be a TaxEditor centric solution which results in unexpected ba...
- 12:47 PM bug #9149: NPE when saving hybrid formula
- This happens during merge on server side. The parent names do not have any data at some time when getTitleCache is ca...
- 12:06 PM bug #9149 (Duplicate): NPE when saving hybrid formula
- ~~~
last remote method : http://localhost:65480/remoting/taxonnode.service
last remote request client time : 2020-0...
07/13/2020
- 09:02 PM feature request #9137 (Resolved): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
- Applied in changeset commit:cdmlib|2e047df9e907f36f7179ebbda3a420adfa690c78.
- 08:43 PM task #9148 (Resolved): Replace sanselan library by the newer apache commons-imaging
- Should be fixed, please review
- 02:42 PM task #9148 (Closed): Replace sanselan library by the newer apache commons-imaging
- commons-imaging is based on sanselan development so not much adaptation is needed.
- 06:12 PM feature request #9146 (Resolved): filter image metadata by include and exclude lists of key words
- implemented with test
- 12:59 PM feature request #9146 (Closed): filter image metadata by include and exclude lists of key words
- Not all image metadata read from image files (stored in EXIF and ICPT data fields) it to be exposed to the public via...
- 02:17 PM bug #9147 (Feedback): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- The semantics of String.join() and StringUtils.join() is different to the one of CdmUtils.concat() especially in term...
- 02:03 PM bug #9147 (Closed): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Use `String.join()` or one of the `org.apache.commons.lang3.StringUtils.join(..)` methods instead. These methods are ...
07/11/2020
- 08:24 PM task #6606 (Closed): Import Bogota specimen data
- This can be closed as the Bogota database will not be used anyway. Cleanup import data not necessary anymore.
- 08:22 PM bug #9145 (Closed): Add sources to E+M IPNI distribution data
- 10:52 AM bug #5710: Changing the database connection must reset all caches
- This needs to be checked if this fully solves the problem
- 10:52 AM bug #5710 (Resolved): Changing the database connection must reset all caches
- There is a cache also in TermManager !!!
This is currently not emptied when connecting to a new datasource.
I a... - 10:32 AM bug #5710: Changing the database connection must reset all caches
- It looks like emptying the cache is done in CdmStoreConnector in this line
~~~
CdmStore.setInstance(applicationCo...
07/10/2020
- 09:40 PM bug #9145 (Closed): Add sources to E+M IPNI distribution data
- ... imported by #8612
- 07:50 PM task #9144 (New): Enable org.eclipse.jetty.io.ConnectionStatistics jmx bean and collect request statistics with collectd
- 1. Enable org.eclipse.jetty.io.ConnectionStatistics jmx bean https://www.eclipse.org/jetty/documentation/current/stat...
- 06:45 PM bug #9143: Distribution data sources are missing if multiple distributions exist
- so, jetzt seh ich das ein bisschen genauer. Das Problem ist, dass es sich um aggregierte Daten handelt:
![](pictur... - 05:35 PM bug #9143 (In Progress): Distribution data sources are missing if multiple distributions exist
- AM:
also da sind in der DB auch keine Quellen dran, da kann im Portal auch nichts rauskommen.
Übrigens sehen di... - 05:18 PM bug #9143 (Closed): Distribution data sources are missing if multiple distributions exist
- Distribution data sources are missing if multiple distributions exist for the same area and the same status. This is ...
- 04:48 PM feature request #9137: IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
- RH:
ihr schraubt noch an der Darstellung der Metadaten. Allerdings weiß ich nicht, wie weit Details diskutiert wor... - 10:54 AM feature request #9137 (Feedback): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
- All image metadata (EXIF, IPTC, ...) is extracted by the cdmlib. The data portal only receives this data.
So the pr... - 04:43 PM bug #9142 (Closed): The Agent search dialog shows duplicated entries
- This happens in caryo_spp.
Things like this sometimes happen due multiple language representations of a term which... - 04:12 PM task #9141 (New): setup IP connection rate limiting per IP address
- The production server frequently is brought to its limit by clients sending as too many request per second
Solutio... - 04:08 PM bug #9140 (Resolved): Deleting an image forgets moving operation
- If I move an image in the taxon media view and then also delete an image and then save the movement is not stored but...
- 04:02 PM feature request #9139 (New): When deleting a taxon with images the configuration should also handle the image
- Currently the configuration is only about taxon and name attributes and there relations.
But often media are only ... - 03:20 PM task #9138: Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId()
- AM:
wie ... erwähnt, funktioniert bei uns gerade ein Biocase Test nicht, weil wohl ein Record nicht gefunden wird... - 03:18 PM task #9138 (Closed): Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId()
- The test has been set to ignore because 1 of the 2 specimen does not exist anymore in the original data.
So we nee... - 11:45 AM bug #9000 (Closed): UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
- no more problems
- 11:33 AM bug #9000: UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
- Yes this should be fixed by the attached changesets. Please review.
- 10:46 AM bug #9000 (Resolved): UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
- Hi Andreas, I guess this is solved already.
07/09/2020
- 08:29 PM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- No, for TDWG areas the mapping is not stored in annotations but is hardcoded in the EditGeoServiceUtilities class. Se...
- 08:12 PM feature request #9137 (Closed): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
- The UV reads and displays most the EXIF metadata of an image. However, to me is not clear if this is also the case fo...
- 07:44 PM bug #9136 (New): Make Institution creatable where needed
- In the rights section (supplemental data) it is possible to add an institution as rights owner (which makes sense as ...
- 03:24 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- **TODO**: Skip the creation of a MediaRepresentation if a part with exactly the same URL already exists.
- 11:28 AM feature request #9134: Rule based creation of additional media representations "on the fly"
- please review
- 11:20 AM feature request #9134: Rule based creation of additional media representations "on the fly"
- A set of generic transformation rules for the BGBM digilib server rules will be stored in each db. This has been done...
- 11:11 AM feature request #9134 (Resolved): Rule based creation of additional media representations "on the fly"
- Applied in changeset commit:cdmlib|2a4ebda1f53750568311f67326e16fb4e3d7fa2a.
- 11:38 AM feature request #9135 (New): All media related web service end points with MediaUriTransformation and/or bestMatchingRepresentation filter
- At the time being, only some web service endpoints can filter media representation which meets requirements for size ...
07/08/2020
- 06:37 PM bug #9133: cdm_taxontree active taxon is focused after page reload
- Andreas Kohlbecker wrote:
> 1. open http://flora-of-cyprus.eu/cdm_dataportal/taxon/e9925386-b197-4d81-a4fc-137ea96e6... - 01:29 PM bug #9133 (New): cdm_taxontree active taxon is focused after page reload
1. open http://flora-of-cyprus.eu/cdm_dataportal/taxon/e9925386-b197-4d81-a4fc-137ea96e6b4f/images
2. reload the p...- 05:29 PM feature request #9134 (Closed): Rule based creation of additional media representations "on the fly"
- Often only the full sized image URIs are recorded in a db but thumbnail sized images are often required.
Based on... - 04:59 PM task #9132 (In Progress): Update cyprus images to Scaler default API and add thumbnails
- ~~~ sql
SELECT Replace(Replace(uri, 'https://pictures.bgbm.org/digilib/Scaler/IIIF/Cyprus!', ''), '/full/full/0/defa... - 04:59 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- AM:
noch ein „kleiner“ Nachtrag. Es gibt im CDM inzwischen >100 „Bilder“, die in als Datei nicht mehr existieren. ... - 11:52 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Taxon not found: Ophrys kotschyi-sphegodes
- 11:30 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Problem (Could not read block (block start: 14468, block length: 15217440, data length: 65527).) when reading metadat...
- 11:23 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Keyword has not correct format and can not be parsed: showing abscission zone for file Bromus_fasciculatus_s_delilei...
07/07/2020
- 08:35 PM task #9132 (In Progress): Update cyprus images to Scaler default API and add thumbnails
- Currently only 1 representation exists (for the full image) using the Scaler IIF API with links like:
https://pict... - 05:05 PM feature request #9131 (Worksforme): Show annotations for teams and persons in PhycoBank portal
- Henning:
Bei einigen Autoren habe ich bereits „Editorial“ Annotations, die noch nicht angezeigt werden (Beispiel... - 03:01 PM feature request #9128 (Resolved): Default copyright statement below image viewer
- Applied in changeset commit:cdm-dataportal|3025e3fad159d10338ee136f4b84abe1045230f5.
- 01:35 PM feature request #9128 (Closed): Default copyright statement below image viewer
- For portals using the FSI viewer it was possible to store a default copyright statement in the FSI Server which has b...
- 02:34 PM task #9129: cdm property to store a default copyright statement for media items
- Please review
- 02:27 PM task #9129 (Resolved): cdm property to store a default copyright statement for media items
- Applied in changeset commit:cdmlib|600a12c7c81c43398ef8ee3e9aaca7d44b2f709e.
- 02:15 PM task #9129: cdm property to store a default copyright statement for media items
- I think defaultMediaCopyright(Statement) is better as there are also many other possible types of copyright e.g. on t...
- 01:37 PM task #9129 (Closed): cdm property to store a default copyright statement for media items
- Suggested property names:
* `defaultCopyright`
* `defaultMediaCopyrightStatement`
- 01:41 PM task #9130 (New): add default copyright statment to IIIF manifest as attribution to the sequence
A. Prepend to the existing text in `sequence.attribution = ""`
or
B. replace the `sequence.attribution`compl...
07/06/2020
- 03:58 PM task #9125 (Closed): Import Flora of Uzbekistan taxon descriptions
- 12:40 PM task #9125 (Closed): Import Flora of Uzbekistan taxon descriptions
- 12:46 PM task #9127 (New): Import Flora of Uzbekistan specimen data
- type specimen and other specimen
- 12:44 PM bug #9126 (Closed): Import Flora of Uzbekistan phenology data
- 12:39 PM bug #9049 (Closed): Import Flora of Uzbekistan taxa habitats
- 10:43 AM bug #9049 (In Progress): Import Flora of Uzbekistan taxa habitats
- 10:39 AM task #9041 (Closed): Import Flora of Uzbekistan taxa altitudes
- 10:37 AM task #9041 (Resolved): Import Flora of Uzbekistan taxa altitudes
- Applied in changeset commit:cdmlib|49db4e78808aa6e0753412020e0e27895af12626.
07/04/2020
- 06:33 PM bug #9124 (Closed): Altitude feature should have [m] as measurement unit by default
- This requires that measurement units are loaded before.
Update script needed - 02:54 PM feature request #8978 (Closed): Implement measurement values as BigDecimal
- moved algorithm testing to new ticekt: #9123
Open TaxEditor ticket for matrix editing moved to: #9080 - 02:52 PM task #9123 (Closed): Fix BigDecimal algebra in aggregation algorithms
- see #8978 for details
07/03/2020
- 04:18 PM bug #8310 (In Progress): Issues to solve in E+M shapefile
- 04:15 PM feature request #2489 (Resolved): strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- 04:09 PM feature request #2489: strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- to review:
1. wait until the shapefile is available in the geoserver
2. test manually if the order of polygons w... - 04:08 PM feature request #2489: strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- the merged shapefile has been created an is available at https://github.com/cybertaxonomy/tdwg-area-shapefiles
- 04:14 PM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- I passed this issue to you since I am assuming that the mapping is defined per default for the terms.
I this is no... - 04:13 PM feature request #9122 (Feedback): update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- The csv export of the attribute tables is found at https://github.com/cybertaxonomy/tdwg-area-shapefiles/blob/master/...
- 09:12 AM feature request #9071: Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- This should be fixed now. Please review.
- 09:11 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- Applied in changeset commit:cdmlib|2327c7599e20695ff913cf4289a70e0788ef9599.
- 08:52 AM feature request #9101 (Closed): Add feature "Fruiting Period"
- Missing abbreviation is handled in #9121
- 08:51 AM feature request #9121 (Closed): Add abbreviations to Feature
- Currently the term loading for features does not allow abbreviations.
But these are needed e.g. for Flowering peri... - 08:43 AM feature request #8991 (Closed): Add feature "Flowering Period"
- Update script ticket for missing supportsTemporalData on test systems created: #9120
- 08:42 AM task #9120 (Closed): Update script for flowering period supports temporal data
- according to #8991#note-5 some flowering periods on test systems do not yet have the supportsTemporalData flag set. T...
- 08:38 AM bug #9115 (Closed): NPE in reference bulk editor
07/02/2020
- 01:17 PM bug #8310: Issues to solve in E+M shapefile
- shapefiles can be downloaded from http://download.geofabrik.de/europe.html
- 11:58 AM bug #9099 (Resolved): placemark icon in kml map not clickable
- Applied in changeset commit:cdm-dataportal|720f43681d5eefdc33bd09644d7a0f2efd58c622.
- 10:47 AM task #9119 (Resolved): Remove schema create and schema update functionality from datsource view
- please review
- 10:25 AM task #9119 (Closed): Remove schema create and schema update functionality from datsource view
- As now schema creation and schema update can be done via taxeditor-webapp (#9025), too, we do not need it anymore the...
- 09:50 AM feature request #9118 (Resolved): Change p2 update site to https in Taxeditor
- I think we can test this with the nightly builds
- 09:45 AM feature request #9118 (Closed): Change p2 update site to https in Taxeditor
- 09:00 AM feature request #9009 (Closed): Add structure to store media metadata
- The type level java doc regarding auditing was not up to date. I changed this and the ticket can be closed.
- 08:44 AM feature request #8134 (Closed): Implement verbatim type information in dataportal
- Andreas Kohlbecker wrote:
>
> So there is one last bit to do here:
>
> * show textual type information in regis... - 08:43 AM feature request #9117 (New): show textual type information in registration page
- last remaining task copied from #8134
- 08:39 AM feature request #9010 (Closed): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- Andreas Müller wrote:
> Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded ... - 08:38 AM bug #9058 (Closed): Hibernate loggs error when creating schema on MySQL due to failing index creation
- yes in deed!
- 08:37 AM bug #8682 (Closed): cdm-server debian packages configured for jemalloc
- `LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libjemalloc.so.1` removed from all servers
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