Activity

From 06/23/2020 to 07/22/2020

07/22/2020

11:58 PM task #9163 (Closed): Remove redundant exclude notes for Flora of Greece: Andreas Müller
11:58 PM task #9163 (Resolved): Remove redundant exclude notes for Flora of Greece: Applied in changeset commit:cdmlib-apps|2d1cf56bd48df49359a90fd4c4158f1febb5fe3c. Andreas Müller
11:54 PM task #9163 (Closed): Remove redundant exclude notes for Flora of Greece: Andreas Müller
09:19 PM bug #7895: registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in RegistrationWorkingSet: Is there a reason why you changed the target version to Fauna Europaea Portal Release?
The fixed ticket belongs to 5.9. Andreas Müller
01:10 PM bug #7895 (Worksforme): registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in RegistrationWorkingSet: this has already been fixed by commit:6b0f8cd Andreas Kohlbecker
03:14 PM feature request #8317: Omit ex-author if ex-author=author: Solved and tested.
Please review.
For fixing the wrong data in the production system you may want to edit the a... Andreas Kohlbecker
03:13 PM feature request #8317 (Resolved): Omit ex-author if ex-author=author: Applied in changeset commit:cdm-vaadin|ff522f12a377c61ee737ebfa2f4f5cbc95398200. Andreas Kohlbecker
02:07 PM feature request #8230 (Closed): NameTypePopupEditor: genus selectable as the name type for higher ranks: Example: http://phycobank.org/102321 (worked perfectly)
Currently no problems. Close this ticket and will only reope... Wolf-Henning Kusber
01:35 PM feature request #8230 (Feedback): NameTypePopupEditor: genus selectable as the name type for higher ranks: I have no problems selecting a genus as type name for a family:
![](picture817-1.png)
Also from looking into th... Andreas Kohlbecker
12:43 PM task #9105 (Closed): rename NodeSortMode etc to TaxonNodeSortMode: Andreas Kohlbecker
12:15 PM bug #9162 (Worksforme): Registration page: Typedesignation missing: Apparently the server was hung. After rebooting the server the type designation is shown again: http://test.e-taxonom... Andreas Kohlbecker
08:58 AM bug #9162 (Worksforme): Registration page: Typedesignation missing: hier ist die Ausgabe im Testportal zu 102157:
![](picture329-1.png) Andreas Kohlbecker
08:41 AM task #9161: E+M shapefile with Kaukasus regions: Hallo,

In der DB (cdm_production)_euromed_caucasus befindet sich das Vokabular (E+M Caucasus Areas)
mit den ... Andreas Kohlbecker
08:40 AM task #9161 (Rejected): E+M shapefile with Kaukasus regions: Wir brauchen dafür aber keine politischen, sondern pflanzengeografische Regionen. In der Kaukasus-Instanz müssten die... Andreas Kohlbecker

07/21/2020

04:24 PM bug #8310 (Resolved): Issues to solve in E+M shapefile: I consider this as fully completed. Andreas Kohlbecker
04:23 PM bug #8310: Issues to solve in E+M shapefile: The latest run of the mapping service on edit-test (updated to the latest state of the production system) now reports... Andreas Kohlbecker
03:42 PM bug #8310: Issues to solve in E+M shapefile: Hallo,
ich habe die Name area labels jetzt teilweise umbenannt, so wie es mir sinnvoll erschien. Ob die Shapefil... Andreas Kohlbecker
03:41 PM bug #8310: Issues to solve in E+M shapefile: Hallo,

zu den Arealen in den Shapefiles:
ich denke, grundsätzlich ist das jetzt richtig. Es sollte für alle ... Andreas Kohlbecker
03:41 PM bug #8310: Issues to solve in E+M shapefile: [Eckard wrote:]
Hallo Andreas,
also, ich denke nicht, dass die Kartenanzeige noch sehr im Fluss und häufigen ... Andreas Kohlbecker

07/20/2020

05:56 PM bug #8310: Issues to solve in E+M shapefile: Hallo,
ja, wenn für Transcaucasia (Tcs) ein gemeinsames Polygon ohne Ländergrenzen geschaffen werden kann, ist das... Andreas Kohlbecker
05:55 PM bug #8310: Issues to solve in E+M shapefile: Andreas Kohlbecker in email from Freitag, 10. Juli 2020 11:45:03:
Betrachten wir zum Beispiel den Fall Transcaucas... Andreas Kohlbecker
03:07 PM task #9132: Update cyprus images to Scaler default API and add thumbnails: I modified the small thumbnails images with following sql statement:
~~~sql
UPDATE MediaRepresentationPart p set... Andreas Kohlbecker
02:21 PM task #9132: Update cyprus images to Scaler default API and add thumbnails: Ralf voted for cropping the images (Email from 16.07.20 17:58)
Andreas Kohlbecker
02:05 PM feature request #9134 (Resolved): Rule based creation of additional media representations "on the fly": Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> > Using media clones can also ... Andreas Kohlbecker
02:05 PM task #9160 (New): Avoid modified media entities in IMediaToolbox.filterPreferredMediaRepresentations(): see #9134#note-15 for in depth details.
The best solution would be to use MediaDTOs
Andreas Kohlbecker
11:57 AM feature request #9152 (Resolved): PreferencesService caches CdmPreferences: Andreas Kohlbecker
11:57 AM feature request #9152: PreferencesService caches CdmPreferences: I implemented the service level cache for cdm preferences with locking mechanism.
Please review carefully.
Andreas Kohlbecker
11:30 AM feature request #9152: PreferencesService caches CdmPreferences: Caching CdmPreferences at the service class level is not straight forward and picked with a couple of pitfalls:
1.... Andreas Kohlbecker
10:05 AM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4: The new map layer is now available:
http://edit.africamuseum.be/geoserver/topp/wms?service=WMS&version=1.1.0&requ... Andreas Kohlbecker

07/17/2020

09:34 AM bug #9157 (In Progress): Further improve deduplication of names: Andreas Müller
09:11 AM bug #9157 (In Progress): Further improve deduplication of names: copied from #9085
* ~~make parsing of articles and book sections stricter (only EQUAL allowed) to guarantee identi... Andreas Müller
09:22 AM feature request #9159 (New): Add page matching to parsed reference matching: Parsed references usually have a detail page. This can be used to identify articles and book sections if existing mat... Andreas Müller
09:19 AM feature request #9158 (New): Handle identiy matching in matching framework: XXX_OR_xxx_NULL usually requires that at least 1 other parameter guarantees the identity of the 2 matching objects.
... Andreas Müller
09:13 AM feature request #9085 (Closed): Improve deduplication of parsed names: Open issues moved to #9157 Andreas Müller

07/16/2020

11:50 PM bug #9156 (New): Searching for a taxon in the PolytomousKey perspective results in AssertionFailure: using the simple taxon search
~~~
last remote method : http://api.cybertaxonomy.org:80/cyprus/remoting/polytomous... Andreas Müller
10:19 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>': Example:
http://phycobank.org/100005
correct: Planothidium victorii
to be corrected: Planothidium victori
The... Wolf-Henning Kusber
08:02 PM feature request #8196 (Resolved): display ortographic corrections in name relations as 'corrected name: <nameCache>': Andreas Kohlbecker
02:10 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>': I now changed `label` and `text` of the according term representation (1cbb3aac-afec-4770-bc59-006f20d65e0e') to "cor... Andreas Kohlbecker
08:48 PM bug #9147 (Closed): Use StringBuilder in CdmUtils.concat() to avoid performance penalties: With the final adaption of its subject this ticket is fully solved.
Code is perfect. Andreas Kohlbecker
06:14 PM feature request #9134: Rule based creation of additional media representations "on the fly": the fixed default transformations as json for reference:
~~~json
[ {
"scheme" : null,
"host" : {
"repl... Andreas Kohlbecker
06:13 PM feature request #9134: Rule based creation of additional media representations "on the fly": Andreas Müller wrote:
>
> > "width" : 200,
> > "height" : 200
> > if we use &mo=crop&dw=200&dh=**147**
>
> s... Andreas Kohlbecker
05:56 PM feature request #9134: Rule based creation of additional media representations "on the fly": Andreas Müller wrote:

> * MediaUriTransformationProcessor.calculateTargetSize() does not handle maxextend trans... Andreas Kohlbecker
04:42 PM feature request #9134: Rule based creation of additional media representations "on the fly": Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> I implemented all of your suggestions and discovered a bug ... Andreas Müller
04:28 PM feature request #9134: Rule based creation of additional media representations "on the fly": Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> Using media clones can also cause problems: Rest service cl... Andreas Müller
04:09 PM feature request #9134: Rule based creation of additional media representations "on the fly": Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Does it make sense to use
> >
> > "width" : 200,
> > ... Andreas Müller
03:53 PM feature request #9134: Rule based creation of additional media representations "on the fly": Andreas Müller wrote:
> Does it make sense to use
>
> "width" : 200,
> "height" : 200
>
> if we use &mo=... Andreas Kohlbecker
03:50 PM feature request #9134: Rule based creation of additional media representations "on the fly": Andreas Müller wrote:
> ...
> * The MediaToolbox methods change the media itself by adding or removing representa... Andreas Kohlbecker
03:39 PM feature request #9134: Rule based creation of additional media representations "on the fly": Does it make sense to use
"width" : 200,
"height" : 200
if we use &mo=crop&dw=200&dh=**147**
Do we ne... Andreas Müller
01:00 PM feature request #9134: Rule based creation of additional media representations "on the fly": new default transformation for digilib:
~~~json
[ {
"scheme" : null,
"host" : {
"replace" : "pictures.... Andreas Kohlbecker
08:36 AM feature request #8854 (In Progress): Choose new base font size for the portal: I modified the font setting and send an email to the BGBM users to gather feedback Andreas Kohlbecker
08:08 AM task #9132: Update cyprus images to Scaler default API and add thumbnails: Andreas Müller wrote:
> The above problems are all solved and discussed with Ralf so I guess we can close this ticke... Andreas Kohlbecker

07/15/2020

07:40 PM feature request #9153: Handle additional information in image metadata: As the remaining issue is related to a ticket implemented by AK I pass this ticket to AK.
If the new parameter sti... Andreas Müller
03:01 PM feature request #9153: Handle additional information in image metadata: ... and existing image files need to be adapted. Andreas Müller
03:01 PM feature request #9153: Handle additional information in image metadata: Andreas Müller wrote:
> This should be implemented for imports and metadata reading.
For imports and metadata rea... Andreas Müller
02:54 PM feature request #9153: Handle additional information in image metadata: RH:
Bei Bromus fasciculatus delilei (Fall bei Dir hinten unten) finde ich keine Lösung. Bei den Bildern gibt es au... Andreas Müller
02:50 PM feature request #9153 (New): Handle additional information in image metadata: In rare cases the images on the image server as used for cyprus and cichorieae(?) include some more information addti... Andreas Müller
07:32 PM task #9155 (Closed): Update of used person names: Wolf-Henning Kusber
07:23 PM task #9155 (Closed): Update of used person names: Example: more than one author with family name "Zhang" was set to Abbrv. Title = "Zhang"
Zhang, W. was used for an a... Wolf-Henning Kusber
07:31 PM task #9132 (Resolved): Update cyprus images to Scaler default API and add thumbnails: The above problems are all solved and discussed with Ralf so I guess we can close this ticket. Andreas Müller
07:29 PM task #9132: Update cyprus images to Scaler default API and add thumbnails: I updated data in cyprus
~~~
UPDATE MediaRepresentationPart p
SET uri = Concat(uri, '&uvfix=1')
WHERE p.uri LIK... Andreas Müller
04:30 PM task #9132: Update cyprus images to Scaler default API and add thumbnails: The Universalviewer appends `?t={some-hash}` to the image URI. By this the links to the scaler api become invalid an... Andreas Kohlbecker
04:14 PM feature request #9154: Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional: AM:
wurde eingentlich mal diskutiert, ob man taxeditor.webapp nicht automatisch mit anbietet sondern als nachladba... Andreas Müller
03:48 PM feature request #9154: Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional: Issue from #5752: Datasource view could be moved to taxeditor.webapp as it is only relevant together with it. (togeth... Andreas Müller
03:43 PM feature request #9154 (New): Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional: this is a follow up ticket for #5752
* remove and upgrade dependencies (mostly from taxeditor.cdmlib) (#9204)
* m... Andreas Müller
03:46 PM feature request #5752 (Resolved): Reduce TaxEditor size: Many improvements have been done in this ticket. For further improvements a follow up ticket exists: #9154
Open is... Andreas Müller
03:41 PM feature request #5752: Reduce TaxEditor size: cdmlib-remote-webapp is now removed from taxeditor.cdmlib which reduces the size of TaxEditor about 115 MB Andreas Müller
03:24 PM bug #8814: Clean implementation for permissions with combination of Taxonnode and other permissions: Assignee was missing for this ticket therefore it was moved to next milestone or closed in old milestone.
If this ... Andreas Müller
03:03 PM feature request #9146: filter image metadata by include and exclude lists of key words: Please also have a look at #9153 when defining the default includes list Andreas Müller
02:32 PM feature request #9152 (Closed): PreferencesService caches CdmPreferences: implement as static private Map<String,String>
once the methods `public void set(CdmPreference preference)` or `pu... Andreas Kohlbecker
02:28 PM feature request #8989: Implement flowering periods (temporal facts) in dataportal: As we do now already have data in production (uzbekistan) this should be implemented asap
e.g. http://portal.cybe... Andreas Müller
02:21 PM bug #9126 (Closed): Import Flora of Uzbekistan phenology data: Andreas Müller
02:20 PM bug #9126 (Resolved): Import Flora of Uzbekistan phenology data: Applied in changeset commit:cdmlib|60451921a5902b944295844f9cb5156586971864. Andreas Müller

07/14/2020

09:23 PM bug #5710: Changing the database connection must reset all caches: Can you please test the results of the latest changes and see if the problem still exists by testing with data relate... Andreas Müller
09:17 PM task #9119 (Feedback): Remove schema create and schema update functionality from datsource view: The result looks fine. Only I wonder if we can also remove the the code that was called before to not have dead code.... Andreas Müller
09:14 PM feature request #9134: Rule based creation of additional media representations "on the fly": There is one issue that needs to be solved:
* MediaToolbox.readTransformations is creating default preference valu... Andreas Müller
09:12 PM feature request #9134 (Feedback): Rule based creation of additional media representations "on the fly": As far as I can see this works well.
Some minor issues:
* The MediaToolbox methods change the media itself by a... Andreas Müller
06:01 PM feature request #9146: filter image metadata by include and exclude lists of key words: I don't know if this is handled in this ticket or in another one. But the current implementation does not yet handle ... Andreas Müller
05:52 PM feature request #9146 (Feedback): filter image metadata by include and exclude lists of key words: Code looks fine and tests run so I guess it works, though no tests exist for "excludes".
I only have 2 architectur... Andreas Müller
05:12 PM bug #9151 (Closed): invalid pager information in /description/namedAreasInUse webservice: e.g.:
~~~json
http http://api.cybertaxonomy.org/euromed/description/namedAreasInUse includeAllParents==true pag... Andreas Kohlbecker
04:48 PM feature request #9137: IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet: I hope this is fixed now. Can you please review? Andreas Müller
04:40 PM bug #9143 (Feedback): Distribution data sources are missing if multiple distributions exist: Andreas Müller
04:40 PM bug #9143: Distribution data sources are missing if multiple distributions exist: The problem is already described in #4366. However, there it is handled as pure data aggregation (transmission engine... Andreas Müller
04:17 PM feature request #4366 (Duplicate): Transmissionengine Distribution: implement rules for source references: Close as duplicate for #8672 which is more general Andreas Müller
04:13 PM bug #4134 (Closed): Transmissionengine Distribution seems to miss distributions for higher Taxa: Andreas Müller
03:38 PM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties: Andreas Kohlbecker wrote:
> When writing tests to compare the performance of `+` with `StringBuilder` or `StringBuff... Andreas Müller
03:22 PM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties: Interesting. I didn't know about the differences between StringBuilder and StringBuffer. I adapted the code according... Andreas Müller
03:20 PM bug #9147 (Resolved): Use StringBuilder in CdmUtils.concat() to avoid performance penalties: Applied in changeset commit:cdmlib|63b2dbdb54bc105a8fa615e36eb754eeed6d3596. Andreas Müller
12:54 PM bug #9147 (Feedback): Use StringBuilder in CdmUtils.concat() to avoid performance penalties: Andreas Müller wrote:
> I changed the method to use StringBuffer now.
>
> However, I tested the performance diff... Andreas Kohlbecker
09:52 AM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties: I changed the method to use StringBuffer now.
However, I tested the performance difference and it is true that us... Andreas Müller
09:46 AM bug #9147 (Resolved): Use StringBuilder in CdmUtils.concat() to avoid performance penalties: Applied in changeset commit:cdmlib|8ab5e47c6a6ca132f2e495900c3bdfc7743d69c8. Andreas Müller
01:03 PM task #9150 (New): Test if the overriding of setTitleCache in Media class makes really sense: This has been implemented by NH 10 years ago. It might be a TaxEditor centric solution which results in unexpected ba... Andreas Müller
12:47 PM bug #9149: NPE when saving hybrid formula: This happens during merge on server side. The parent names do not have any data at some time when getTitleCache is ca... Andreas Müller
12:06 PM bug #9149 (Duplicate): NPE when saving hybrid formula: ~~~
last remote method : http://localhost:65480/remoting/taxonnode.service
last remote request client time : 2020-0... Andreas Müller

07/13/2020

09:02 PM feature request #9137 (Resolved): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet: Applied in changeset commit:cdmlib|2e047df9e907f36f7179ebbda3a420adfa690c78. Andreas Müller
08:43 PM task #9148 (Resolved): Replace sanselan library by the newer apache commons-imaging: Should be fixed, please review Andreas Müller
02:42 PM task #9148 (Closed): Replace sanselan library by the newer apache commons-imaging: commons-imaging is based on sanselan development so not much adaptation is needed. Andreas Müller
06:12 PM feature request #9146 (Resolved): filter image metadata by include and exclude lists of key words: implemented with test Andreas Kohlbecker
12:59 PM feature request #9146 (Closed): filter image metadata by include and exclude lists of key words: Not all image metadata read from image files (stored in EXIF and ICPT data fields) it to be exposed to the public via... Andreas Kohlbecker
02:17 PM bug #9147 (Feedback): Use StringBuilder in CdmUtils.concat() to avoid performance penalties: The semantics of String.join() and StringUtils.join() is different to the one of CdmUtils.concat() especially in term... Andreas Müller
02:03 PM bug #9147 (Closed): Use StringBuilder in CdmUtils.concat() to avoid performance penalties: Use `String.join()` or one of the `org.apache.commons.lang3.StringUtils.join(..)` methods instead. These methods are ... Andreas Kohlbecker

07/11/2020

08:24 PM task #6606 (Closed): Import Bogota specimen data: This can be closed as the Bogota database will not be used anyway. Cleanup import data not necessary anymore. Andreas Müller
08:22 PM bug #9145 (Closed): Add sources to E+M IPNI distribution data: Andreas Müller
10:52 AM bug #5710: Changing the database connection must reset all caches: This needs to be checked if this fully solves the problem Andreas Müller
10:52 AM bug #5710 (Resolved): Changing the database connection must reset all caches: There is a cache also in TermManager !!!
This is currently not emptied when connecting to a new datasource.
I a... Andreas Müller
10:32 AM bug #5710: Changing the database connection must reset all caches: It looks like emptying the cache is done in CdmStoreConnector in this line
~~~
CdmStore.setInstance(applicationCo... Andreas Müller

07/10/2020

09:40 PM bug #9145 (Closed): Add sources to E+M IPNI distribution data: ... imported by #8612 Andreas Müller
07:50 PM task #9144 (New): Enable org.eclipse.jetty.io.ConnectionStatistics jmx bean and collect request statistics with collectd: 1. Enable org.eclipse.jetty.io.ConnectionStatistics jmx bean https://www.eclipse.org/jetty/documentation/current/stat... Andreas Kohlbecker
06:45 PM bug #9143: Distribution data sources are missing if multiple distributions exist: so, jetzt seh ich das ein bisschen genauer. Das Problem ist, dass es sich um aggregierte Daten handelt:
![](pictur... Andreas Müller
05:35 PM bug #9143 (In Progress): Distribution data sources are missing if multiple distributions exist: AM:
also da sind in der DB auch keine Quellen dran, da kann im Portal auch nichts rauskommen.
Übrigens sehen di... Andreas Kohlbecker
05:18 PM bug #9143 (Closed): Distribution data sources are missing if multiple distributions exist: Distribution data sources are missing if multiple distributions exist for the same area and the same status. This is ... Andreas Kohlbecker
04:48 PM feature request #9137: IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet: RH:
ihr schraubt noch an der Darstellung der Metadaten. Allerdings weiß ich nicht, wie weit Details diskutiert wor... Andreas Müller
10:54 AM feature request #9137 (Feedback): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet: All image metadata (EXIF, IPTC, ...) is extracted by the cdmlib. The data portal only receives this data.
So the pr... Andreas Kohlbecker
04:43 PM bug #9142 (Closed): The Agent search dialog shows duplicated entries: This happens in caryo_spp.
Things like this sometimes happen due multiple language representations of a term which... Andreas Müller
04:12 PM task #9141 (New): setup IP connection rate limiting per IP address: The production server frequently is brought to its limit by clients sending as too many request per second
Solutio... Andreas Kohlbecker
04:08 PM bug #9140 (Resolved): Deleting an image forgets moving operation: If I move an image in the taxon media view and then also delete an image and then save the movement is not stored but... Andreas Müller
04:02 PM feature request #9139 (New): When deleting a taxon with images the configuration should also handle the image: Currently the configuration is only about taxon and name attributes and there relations.
But often media are only ... Andreas Müller
03:20 PM task #9138: Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId(): AM:
wie ... erwähnt, funktioniert bei uns gerade ein Biocase Test nicht, weil wohl ein Record nicht gefunden wird... Andreas Müller
03:18 PM task #9138 (Closed): Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId(): The test has been set to ignore because 1 of the 2 specimen does not exist anymore in the original data.
So we nee... Andreas Müller
11:45 AM bug #9000 (Closed): UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org: no more problems Andreas Kohlbecker
11:33 AM bug #9000: UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org: Yes this should be fixed by the attached changesets. Please review. Andreas Müller
10:46 AM bug #9000 (Resolved): UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org: Hi Andreas, I guess this is solved already. Andreas Kohlbecker

07/09/2020

08:29 PM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4: No, for TDWG areas the mapping is not stored in annotations but is hardcoded in the EditGeoServiceUtilities class. Se... Andreas Müller
08:12 PM feature request #9137 (Closed): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet: The UV reads and displays most the EXIF metadata of an image. However, to me is not clear if this is also the case fo... Andreas Müller
07:44 PM bug #9136 (New): Make Institution creatable where needed: In the rights section (supplemental data) it is possible to add an institution as rights owner (which makes sense as ... Andreas Müller
03:24 PM feature request #9134: Rule based creation of additional media representations "on the fly": **TODO**: Skip the creation of a MediaRepresentation if a part with exactly the same URL already exists. Andreas Kohlbecker
11:28 AM feature request #9134: Rule based creation of additional media representations "on the fly": please review Andreas Kohlbecker
11:20 AM feature request #9134: Rule based creation of additional media representations "on the fly": A set of generic transformation rules for the BGBM digilib server rules will be stored in each db. This has been done... Andreas Kohlbecker
11:11 AM feature request #9134 (Resolved): Rule based creation of additional media representations "on the fly": Applied in changeset commit:cdmlib|2a4ebda1f53750568311f67326e16fb4e3d7fa2a. Andreas Kohlbecker
11:38 AM feature request #9135 (New): All media related web service end points with MediaUriTransformation and/or bestMatchingRepresentation filter: At the time being, only some web service endpoints can filter media representation which meets requirements for size ... Andreas Kohlbecker

07/08/2020

06:37 PM bug #9133: cdm_taxontree active taxon is focused after page reload: Andreas Kohlbecker wrote:
> 1. open http://flora-of-cyprus.eu/cdm_dataportal/taxon/e9925386-b197-4d81-a4fc-137ea96e6... Andreas Müller
01:29 PM bug #9133 (New): cdm_taxontree active taxon is focused after page reload: 1. open http://flora-of-cyprus.eu/cdm_dataportal/taxon/e9925386-b197-4d81-a4fc-137ea96e6b4f/images
2. reload the p... Andreas Kohlbecker
05:29 PM feature request #9134 (Closed): Rule based creation of additional media representations "on the fly": Often only the full sized image URIs are recorded in a db but thumbnail sized images are often required.
Based on... Andreas Kohlbecker
04:59 PM task #9132 (In Progress): Update cyprus images to Scaler default API and add thumbnails: ~~~ sql
SELECT Replace(Replace(uri, 'https://pictures.bgbm.org/digilib/Scaler/IIIF/Cyprus!', ''), '/full/full/0/defa... Andreas Müller
04:59 PM task #9132: Update cyprus images to Scaler default API and add thumbnails: AM:
noch ein „kleiner“ Nachtrag. Es gibt im CDM inzwischen >100 „Bilder“, die in als Datei nicht mehr existieren. ... Andreas Müller
11:52 AM task #9132: Update cyprus images to Scaler default API and add thumbnails: Taxon not found: Ophrys kotschyi-sphegodes
Andreas Müller
11:30 AM task #9132: Update cyprus images to Scaler default API and add thumbnails: Problem (Could not read block (block start: 14468, block length: 15217440, data length: 65527).) when reading metadat... Andreas Müller
11:23 AM task #9132: Update cyprus images to Scaler default API and add thumbnails: Keyword has not correct format and can not be parsed: showing abscission zone for file Bromus_fasciculatus_s_delilei... Andreas Müller

07/07/2020

08:35 PM task #9132 (In Progress): Update cyprus images to Scaler default API and add thumbnails: Currently only 1 representation exists (for the full image) using the Scaler IIF API with links like:
https://pict... Andreas Müller
05:05 PM feature request #9131 (Worksforme): Show annotations for teams and persons in PhycoBank portal: Henning:
Bei einigen Autoren habe ich bereits „Editorial“ Annotations, die noch nicht angezeigt werden (Beispiel... Andreas Kohlbecker
03:01 PM feature request #9128 (Resolved): Default copyright statement below image viewer: Applied in changeset commit:cdm-dataportal|3025e3fad159d10338ee136f4b84abe1045230f5. Andreas Kohlbecker
01:35 PM feature request #9128 (Closed): Default copyright statement below image viewer: For portals using the FSI viewer it was possible to store a default copyright statement in the FSI Server which has b... Andreas Kohlbecker
02:34 PM task #9129: cdm property to store a default copyright statement for media items: Please review Andreas Müller
02:27 PM task #9129 (Resolved): cdm property to store a default copyright statement for media items: Applied in changeset commit:cdmlib|600a12c7c81c43398ef8ee3e9aaca7d44b2f709e. Andreas Müller
02:15 PM task #9129: cdm property to store a default copyright statement for media items: I think defaultMediaCopyright(Statement) is better as there are also many other possible types of copyright e.g. on t... Andreas Müller
01:37 PM task #9129 (Closed): cdm property to store a default copyright statement for media items: Suggested property names:
* `defaultCopyright`
* `defaultMediaCopyrightStatement`
Andreas Kohlbecker
01:41 PM task #9130 (New): add default copyright statment to IIIF manifest as attribution to the sequence: A. Prepend to the existing text in `sequence.attribution = ""`
or
B. replace the `sequence.attribution`compl... Andreas Kohlbecker

06/25/2020

07:03 PM feature request #9101: Add feature "Fruiting Period": Applied in changeset commit:cdmlib|33ab47c40c8cc58e91294096f72d770f71d398b8. Andreas Müller
06:54 PM feature request #9101 (Resolved): Add feature "Fruiting Period": Andreas Müller
06:23 PM feature request #9101 (Closed): Add feature "Fruiting Period": similar to flowering period #8991 Andreas Müller
06:50 PM feature request #8991: Add feature "Flowering Period": Applied in changeset commit:cdmlib|25e3014d375dbc2951b2ff2053a1925e2c5a8a47. Andreas Müller
06:42 PM feature request #8991: Add feature "Flowering Period": Andreas Müller wrote:
> Still need to check if supportsTemporalData is autoamtically created on production (on test ... Andreas Müller
06:47 PM bug #9092: Multiple Representation Exception when editing factual data: As the problems comes with source and referenceForParentChildRelation I tried to revert the changes for the reference... Katja Luther
12:47 PM bug #9092: Multiple Representation Exception when editing factual data: deeper debugging results that the multiple representation does not come from the sec reference but from the descripti... Katja Luther
06:29 PM bug #9102 (Closed): taxonNode status icon breaks sort order in taxontree: for example in the cihorieae portal *Incertae sedis* and *Nomina excludenda* should come as last in the tree:
![](... Andreas Kohlbecker
06:22 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}: moreover the whole reference object as serialized in webservice responses can be simplified a lot. The `authorship` ... Andreas Kohlbecker
05:57 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}: the cause for this bug was not related to #7331 but is caused by an unexpected behavior of ` AdvancedBeanInitializer.... Andreas Kohlbecker
01:08 PM bug #9095 (Resolved): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}: solved by catching the exception in the `TeamOrPersonBaseBeanProcessor` since a real solution (#7331) may need some m... Andreas Kohlbecker
12:13 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}: this problem is potentially highly related to #7331 since the init strategy includes the `sources.citation.authorshi... Andreas Kohlbecker
11:59 AM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}: it apends at `DistributionInfoDTO.tree.children.children.children.data.sources.citation.authorship.nomenclaturalTitle... Andreas Kohlbecker
08:36 AM bug #9095 (Closed): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}: test links:
* https://europlusmed.org/cdm_dataportal/taxon/7c8012f2-bbda-4e51-83cd-39a06994098c
* http://cichorie... Andreas Kohlbecker
06:15 PM feature request #9100 (New): Improve temporal facts data model: AM (an WGB):
ich [bin im Cubaportal] auf die Phenology-Daten gestolpert.
Z.B. http://portal.cybertaxonomy.org/... Andreas Müller
01:06 PM bug #9096 (Duplicate): LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon(): Andreas Kohlbecker
01:05 PM bug #9096: LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon(): duplicate of #9095 Andreas Kohlbecker
08:44 AM bug #9096 (Duplicate): LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon(): test link https://europlusmed.org/cdm_dataportal/taxon/7c8012f2-bbda-4e51-83cd-39a06994098c
~~~
08:42:18.346 ... Andreas Kohlbecker
12:16 PM task #7330: TitleAndNameCacheAutoInitializer misses out References: potentially a duplicate of #7331 - needs to be checked, though!!! Andreas Kohlbecker
11:38 AM bug #9099 (Closed): placemark icon in kml map not clickable: as long the error radius diameter exceeds the placemark icon the icon can not be clicked
http://test.e-taxonomy.e... Andreas Kohlbecker
11:35 AM bug #9097: specimen coordinate links in maps to geohack service broken: example link for testing http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/ec22a1f9-9fd5-4cc... Andreas Kohlbecker
11:32 AM bug #9097 (Resolved): specimen coordinate links in maps to geohack service broken: Applied in changeset commit:cdmlib|00a1503b7cf1c77079368394dfcc3375c6d733f9. Andreas Kohlbecker
11:23 AM bug #9097 (In Progress): specimen coordinate links in maps to geohack service broken: Andreas Kohlbecker
09:05 AM bug #9097 (Closed): specimen coordinate links in maps to geohack service broken: the service api has changed, links should now be like
https://geohack.toolforge.org/geohack.php?language=en&params... Andreas Kohlbecker

06/24/2020

09:53 PM bug #9092: Multiple Representation Exception when editing factual data: Katja Luther wrote:
> mail Sophia:
>
> hab gerade noch festgestellt, dass der Fehler nur bei Arten kommt, bei G... Katja Luther
09:38 PM bug #9092: Multiple Representation Exception when editing factual data: Now I could reproduce the exception and it was again the sec reference of the taxon.
The steps to reproduce are:
... Katja Luther
09:29 PM bug #9092: Multiple Representation Exception when editing factual data: mail Sophia:
Generell übertrage ich halt im Moment immer von der Druckversion der Flora Cuba die Daten. Also norma... Katja Luther
02:51 PM bug #9092: Multiple Representation Exception when editing factual data: In this case the reference which has multiple representations was [Reference [type=WebPage, title=The Spermatophyta o... Katja Luther
10:56 AM bug #9092: Multiple Representation Exception when editing factual data: mail Sophia:
es passiert sowohl wenn ich nur eine Sache eingegeben habe als auch wenn es mehrere waren, normalerwe... Katja Luther
06:59 AM bug #9092 (Closed): Multiple Representation Exception when editing factual data: Hallo liebes Edit Team,
seit dem Update bekomme ich diese Fehlermeldung super häufig wenn ich bei den Factual Data i... Katja Luther
03:45 PM task #9094 (Closed): Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource: This is only required on test servers which have been updated during development of 5.15. Most DBs have already been ... Andreas Müller
12:24 PM bug #9093 (New): Exception after deleting two references: mail WB:
Hallo
im Bulk Editor – ich habe eine Ref. gelöscht, anschl. nicht gespeichert, die nächste gelöscht (nac... Katja Luther
10:56 AM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page: Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded and unplaced taxa should ... Andreas Müller
06:58 AM feature request #7580: User wishes: CharacterMatrix: these issues are not solved yet. Katja Luther
06:56 AM task #8130: Check if related feature data is cleared when supported facts type is changed: we need to decide how to handle this. Katja Luther

06/23/2020

04:20 PM feature request #8134 (Resolved): Implement verbatim type information in dataportal: Andreas Kohlbecker
04:19 PM feature request #8165: enable logback jmx for cdm-server: we switched to logback for the cdm-server Andreas Kohlbecker
03:16 PM feature request #9064 (Closed): Add ExternalLinks to IdentifiableEntities: Andreas Müller
03:15 PM feature request #9090: Implement external links for identifiable entities in TaxEditor: Once this is implemented for references we may further discuss #7984 Andreas Müller
03:08 PM feature request #9090 (New): Implement external links for identifiable entities in TaxEditor: This is most important for references.
Minimum implementation should be in supplemental data view.
But at least f... Andreas Müller
03:13 PM feature request #9091 (New): Show external links for identifiable entites in dataportal: Most important for references Andreas Müller
03:02 PM feature request #9043 (Closed): Add feature "Altitude": Andreas Müller
03:01 PM task #9037 (Closed): Remove old Feature.supportedXXX columns: Andreas Müller
03:01 PM task #9036 (Closed): Remove old TaxonNode.unplaced/doubtful/excluded columns: Andreas Müller
03:00 PM feature request #9004 (Closed): Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source: Andreas Müller
02:18 PM bug #9055 (Feedback): Relabel "Type Designation" to "Type Information": Needs final discussion Andreas Müller
01:43 PM task #9017 (Resolved): Update image link for FoG Willing images: Andreas Müller

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