Activity
From 06/18/2020 to 07/17/2020
07/17/2020
- 09:34 AM bug #9157 (In Progress): Further improve deduplication of names
- 09:11 AM bug #9157 (In Progress): Further improve deduplication of names
- copied from #9085
* ~~make parsing of articles and book sections stricter (only EQUAL allowed) to guarantee identi... - 09:33 AM Revision c80fe770 (cdmlib): ref #9157 handle articles and book sections matching stricter
- 09:22 AM feature request #9159 (New): Add page matching to parsed reference matching
- Parsed references usually have a detail page. This can be used to identify articles and book sections if existing mat...
- 09:19 AM feature request #9158 (New): Handle identiy matching in matching framework
- XXX_OR_xxx_NULL usually requires that at least 1 other parameter guarantees the identity of the 2 matching objects.
... - 09:13 AM feature request #9085 (Closed): Improve deduplication of parsed names
- Open issues moved to #9157
- 08:23 AM Revision c9a6552a (cdmlib): cleanup
07/16/2020
- 11:50 PM bug #9156 (New): Searching for a taxon in the PolytomousKey perspective results in AssertionFailure
- using the simple taxon search
~~~
last remote method : http://api.cybertaxonomy.org:80/cyprus/remoting/polytomous... - 10:19 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
- Example:
http://phycobank.org/100005
correct: Planothidium victorii
to be corrected: Planothidium victori
The... - 08:02 PM feature request #8196 (Resolved): display ortographic corrections in name relations as 'corrected name: <nameCache>'
- 02:10 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
- I now changed `label` and `text` of the according term representation (1cbb3aac-afec-4770-bc59-006f20d65e0e') to "cor...
- 08:48 PM bug #9147 (Closed): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- With the final adaption of its subject this ticket is fully solved.
Code is perfect. - 06:14 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- the fixed default transformations as json for reference:
~~~json
[ {
"scheme" : null,
"host" : {
"repl... - 06:13 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Müller wrote:
>
> > "width" : 200,
> > "height" : 200
> > if we use &mo=crop&dw=200&dh=**147**
>
> s... - 05:56 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Müller wrote:
> * MediaUriTransformationProcessor.calculateTargetSize() does not handle maxextend trans... - 04:42 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> I implemented all of your suggestions and discovered a bug ... - 04:28 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> Using media clones can also cause problems: Rest service cl... - 04:09 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Does it make sense to use
> >
> > "width" : 200,
> > ... - 03:53 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Müller wrote:
> Does it make sense to use
>
> "width" : 200,
> "height" : 200
>
> if we use &mo=... - 03:50 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Andreas Müller wrote:
> ...
> * The MediaToolbox methods change the media itself by adding or removing representa... - 03:39 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- Does it make sense to use
"width" : 200,
"height" : 200
if we use &mo=crop&dw=200&dh=**147**
Do we ne... - 01:00 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- new default transformation for digilib:
~~~json
[ {
"scheme" : null,
"host" : {
"replace" : "pictures.... - 06:07 PM Revision bf5abe7d (cdmlib): ref #9134 fixing bug in default transformation creation
- 05:47 PM Revision 896e7ef8 (cdmlib): ref #9134 fixing calculation of croped thumbnail images and adding tests
- 04:07 PM Revision 5ccd238c (cdmlib): ref #9134 fixing bug with adding entiies to a collection
- 01:24 PM Revision 8165e2b9 (cdmlib): ref #9134 no longer storing DefaultMediaTransformations in the db, better exception handling and more documentation
- 08:36 AM feature request #8854 (In Progress): Choose new base font size for the portal
- I modified the font setting and send an email to the BGBM users to gather feedback
- 08:21 AM Revision b233e13b (cdm-dataportal): ref #8854 base line height to 1.6 * base-font-size
- 08:16 AM Revision 4c0d08da (cdm-dataportal): ref #8854 base font size set to 14px
- 08:08 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Andreas Müller wrote:
> The above problems are all solved and discussed with Ralf so I guess we can close this ticke...
07/15/2020
- 10:30 PM Revision 2455d1e1 (taxeditor): cleanup
- 10:29 PM Revision 2f0d9de4 (taxeditor): fix compile error
- 10:21 PM Revision 20de2ce5 (cdmlib): ref #9071 add test for equal months to ExtendedTimePeriodFormatterTest
- 10:19 PM Revision 6a757427 (cdmlib): add empty factory method to TemporalData
- 10:19 PM Revision 086a1ba9 (cdmlib): DeleteNonReferencedReferencesUpdater uses ReferencingObjectsCount instead of ReferencingObjects
- 10:17 PM Revision bc75c3c7 (cdmlib): cleanup
- 08:33 PM Revision 81f1b374 (cdmlib): cleanup
- 08:32 PM Revision 767ce19d (cdmlib-apps): cleanup
- 07:40 PM feature request #9153: Handle additional information in image metadata
- As the remaining issue is related to a ticket implemented by AK I pass this ticket to AK.
If the new parameter sti... - 03:01 PM feature request #9153: Handle additional information in image metadata
- ... and existing image files need to be adapted.
- 03:01 PM feature request #9153: Handle additional information in image metadata
- Andreas Müller wrote:
> This should be implemented for imports and metadata reading.
For imports and metadata rea... - 02:54 PM feature request #9153: Handle additional information in image metadata
- RH:
Bei Bromus fasciculatus delilei (Fall bei Dir hinten unten) finde ich keine Lösung. Bei den Bildern gibt es au... - 02:50 PM feature request #9153 (New): Handle additional information in image metadata
- In rare cases the images on the image server as used for cyprus and cichorieae(?) include some more information addti...
- 07:32 PM task #9155 (Closed): Update of used person names
- 07:23 PM task #9155 (Closed): Update of used person names
- Example: more than one author with family name "Zhang" was set to Abbrv. Title = "Zhang"
Zhang, W. was used for an a... - 07:31 PM task #9132 (Resolved): Update cyprus images to Scaler default API and add thumbnails
- The above problems are all solved and discussed with Ralf so I guess we can close this ticket.
- 07:29 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- I updated data in cyprus
~~~
UPDATE MediaRepresentationPart p
SET uri = Concat(uri, '&uvfix=1')
WHERE p.uri LIK... - 04:30 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- The Universalviewer appends `?t={some-hash}` to the image URI. By this the links to the scaler api become invalid an...
- 07:29 PM Revision 15d27f3d (cdmlib-apps): ref #9132 add uvfix parameter to Cyprus image import code
- 04:14 PM feature request #9154: Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional
- AM:
wurde eingentlich mal diskutiert, ob man taxeditor.webapp nicht automatisch mit anbietet sondern als nachladba... - 03:48 PM feature request #9154: Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional
- Issue from #5752: Datasource view could be moved to taxeditor.webapp as it is only relevant together with it. (togeth...
- 03:43 PM feature request #9154 (New): Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional
- this is a follow up ticket for #5752
* remove and upgrade dependencies (mostly from taxeditor.cdmlib) (#9204)
* m... - 03:46 PM feature request #5752 (Resolved): Reduce TaxEditor size
- Many improvements have been done in this ticket. For further improvements a follow up ticket exists: #9154
Open is... - 03:41 PM feature request #5752: Reduce TaxEditor size
- cdmlib-remote-webapp is now removed from taxeditor.cdmlib which reduces the size of TaxEditor about 115 MB
- 03:24 PM bug #8814: Clean implementation for permissions with combination of Taxonnode and other permissions
- Assignee was missing for this ticket therefore it was moved to next milestone or closed in old milestone.
If this ... - 03:03 PM feature request #9146: filter image metadata by include and exclude lists of key words
- Please also have a look at #9153 when defining the default includes list
- 02:32 PM feature request #9152 (Closed): PreferencesService caches CdmPreferences
- implement as static private Map<String,String>
once the methods `public void set(CdmPreference preference)` or `pu... - 02:28 PM feature request #8989: Implement flowering periods (temporal facts) in dataportal
- As we do now already have data in production (uzbekistan) this should be implemented asap
e.g. http://portal.cybe... - 02:21 PM bug #9126 (Closed): Import Flora of Uzbekistan phenology data
- 02:20 PM bug #9126 (Resolved): Import Flora of Uzbekistan phenology data
- Applied in changeset commit:cdmlib|60451921a5902b944295844f9cb5156586971864.
- 02:20 PM Revision f26883cb (cdmlib): cleanup
- 02:19 PM Revision 60451921 (cdmlib): fix #9126 implement phenology import
- 02:18 PM Revision 650e6222 (cdmlib-apps): ref 9126 UzbekistanPhenologyActivator added
- 02:17 PM Revision 7f47ea90 (cdmlib-apps): cleanup
- 02:06 PM Revision 92fdeae1 (cdmlib-apps): rename ImageInfo to CdmImageInfo and replace CdmUtils.str2uri
07/14/2020
- 09:23 PM bug #5710: Changing the database connection must reset all caches
- Can you please test the results of the latest changes and see if the problem still exists by testing with data relate...
- 09:17 PM task #9119 (Feedback): Remove schema create and schema update functionality from datsource view
- The result looks fine. Only I wonder if we can also remove the the code that was called before to not have dead code....
- 09:14 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- There is one issue that needs to be solved:
* MediaToolbox.readTransformations is creating default preference valu... - 09:12 PM feature request #9134 (Feedback): Rule based creation of additional media representations "on the fly"
- As far as I can see this works well.
Some minor issues:
* The MediaToolbox methods change the media itself by a... - 09:10 PM Revision 193bfc9a (cdmlib): ref #9134 fix transformation for non-square maxextend transformations
- 09:07 PM Revision 6e48a80a (cdmlib): cleanup
- 07:13 PM Revision ae5cf321 (cdmlib): cleanup
- 06:01 PM feature request #9146: filter image metadata by include and exclude lists of key words
- I don't know if this is handled in this ticket or in another one. But the current implementation does not yet handle ...
- 05:52 PM feature request #9146 (Feedback): filter image metadata by include and exclude lists of key words
- Code looks fine and tests run so I guess it works, though no tests exist for "excludes".
I only have 2 architectur... - 05:34 PM Revision 0b6d2193 (cdm-dataportal): typo and array initialization
- 05:12 PM bug #9151 (Closed): invalid pager information in /description/namedAreasInUse webservice
e.g.:
~~~json
http http://api.cybertaxonomy.org/euromed/description/namedAreasInUse includeAllParents==true pag...- 04:48 PM feature request #9137: IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
- I hope this is fixed now. Can you please review?
- 04:40 PM bug #9143 (Feedback): Distribution data sources are missing if multiple distributions exist
- 04:40 PM bug #9143: Distribution data sources are missing if multiple distributions exist
- The problem is already described in #4366. However, there it is handled as pure data aggregation (transmission engine...
- 04:17 PM feature request #4366 (Duplicate): Transmissionengine Distribution: implement rules for source references
- Close as duplicate for #8672 which is more general
- 04:13 PM bug #4134 (Closed): Transmissionengine Distribution seems to miss distributions for higher Taxa
- 03:38 PM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Andreas Kohlbecker wrote:
> When writing tests to compare the performance of `+` with `StringBuilder` or `StringBuff... - 03:22 PM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Interesting. I didn't know about the differences between StringBuilder and StringBuffer. I adapted the code according...
- 03:20 PM bug #9147 (Resolved): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Applied in changeset commit:cdmlib|63b2dbdb54bc105a8fa615e36eb754eeed6d3596.
- 12:54 PM bug #9147 (Feedback): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Andreas Müller wrote:
> I changed the method to use StringBuffer now.
>
> However, I tested the performance diff... - 09:52 AM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- I changed the method to use StringBuffer now.
However, I tested the performance difference and it is true that us... - 09:46 AM bug #9147 (Resolved): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Applied in changeset commit:cdmlib|8ab5e47c6a6ca132f2e495900c3bdfc7743d69c8.
- 03:20 PM Revision 63b2dbdb (cdmlib): fix #9147 use StringBuilder instead of StringBuffer
- 03:19 PM Revision e0553f4a (cdmlib): cleanup
- 01:03 PM task #9150 (New): Test if the overriding of setTitleCache in Media class makes really sense
- This has been implemented by NH 10 years ago. It might be a TaxEditor centric solution which results in unexpected ba...
- 12:47 PM bug #9149: NPE when saving hybrid formula
- This happens during merge on server side. The parent names do not have any data at some time when getTitleCache is ca...
- 12:06 PM bug #9149 (Duplicate): NPE when saving hybrid formula
- ~~~
last remote method : http://localhost:65480/remoting/taxonnode.service
last remote request client time : 2020-0... - 10:43 AM Revision 9d87f0e6 (cdmlib): cleanup
- 09:46 AM Revision 8ab5e47c (cdmlib): fix #9147 use StringBuffer in concat()
07/13/2020
- 09:02 PM feature request #9137 (Resolved): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
- Applied in changeset commit:cdmlib|2e047df9e907f36f7179ebbda3a420adfa690c78.
- 09:01 PM Revision 2e047df9 (cdmlib): fix #9137 IPTC keywords read by CdmImageInfo
- 08:43 PM task #9148 (Resolved): Replace sanselan library by the newer apache commons-imaging
- Should be fixed, please review
- 02:42 PM task #9148 (Closed): Replace sanselan library by the newer apache commons-imaging
- commons-imaging is based on sanselan development so not much adaptation is needed.
- 08:02 PM Revision 234333cc (taxeditor): ref #9148 add commons-imaging-1.0-alpha1 to TaxEditor dependencies and remove sanselan-0.97-incubator (cont. II)
- 06:38 PM Revision 4a943fb5 (taxeditor): cleanup
- 06:36 PM Revision 74cfb8fa (taxeditor): ref #9148 add commons-imaging-1.0-alpha1 to TaxEditor dependencies and remove sanselan-0.97-incubator (cont.)
- 06:12 PM feature request #9146 (Resolved): filter image metadata by include and exclude lists of key words
- implemented with test
- 12:59 PM feature request #9146 (Closed): filter image metadata by include and exclude lists of key words
- Not all image metadata read from image files (stored in EXIF and ICPT data fields) it to be exposed to the public via...
- 06:11 PM Revision 2eb4c6b4 (cdmlib): ref #9146 media metadata service method with cdm property based include and exclude filter definitions - test
- 06:06 PM Revision adb62052 (taxeditor): cleanup
- 06:06 PM Revision 0b4fe3ea (taxeditor): ref #9148 add commons-imaging-1.0-alpha1 to TaxEditor dependencies and remove sanselan-0.97-incubator
- 05:41 PM Revision 664c8b2a (taxeditor): ref #9148 rename ImageInfo to CdmImageInfo in TaxEditor
- 03:49 PM Revision 2a235907 (cdmlib-apps): cleanup
- 03:48 PM Revision e76ff5da (cdmlib-apps): ref #9145 final changes for IpniSourcesImport
- 03:43 PM Revision 16c69e07 (cdmlib): ref #9148 adapt MediaController and MediaServiceImpl to the new naming CdmImageInfo
- 03:43 PM Revision 9d43097c (cdmlib): ref #9148 change the name of CDM class ImageInfo to CdmImageInfo to avoid name calsh with commons-imaging/ImageInfo
- 03:34 PM Revision 1c0438e9 (cdmlib): ref #9146 typo
- 03:32 PM Revision 036b973d (cdmlib): ref #9146 media metadata service method with cdm property based include and exclude filter definitions
- 03:18 PM Revision a1257e7e (cdmlib): ref #9148 exchange sanselan by commons-imaging and adapt CDM ImageInfo
- 02:17 PM bug #9147 (Feedback): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- The semantics of String.join() and StringUtils.join() is different to the one of CdmUtils.concat() especially in term...
- 02:03 PM bug #9147 (Closed): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
- Use `String.join()` or one of the `org.apache.commons.lang3.StringUtils.join(..)` methods instead. These methods are ...
- 02:05 PM Revision 11c127bf (cdmlib): ref #9147 deprecating and commenting CdmUtils.concat()
- 01:12 PM Revision 551c4f43 (cdmlib): ref #9134 adding ducumentation for MediaUriTransformationProcessor and Mediatoolbox
- 12:36 PM Revision d0142787 (cdmlib): cleanup
07/11/2020
- 08:24 PM task #6606 (Closed): Import Bogota specimen data
- This can be closed as the Bogota database will not be used anyway. Cleanup import data not necessary anymore.
- 08:22 PM bug #9145 (Closed): Add sources to E+M IPNI distribution data
- 12:48 PM Revision 8e8e9251 (cdmlib): cleanup
- 12:18 PM Revision 482d17ed (cdmlib): cleanup
- 12:18 PM Revision 964efbfc (cdmlib): try to improve DefinedTermBase.clone() (cont. II)
- 12:03 PM Revision 63ed6f1b (cdmlib): try to improve DefinedTermBase.clone() (cont.)
- 10:52 AM bug #5710: Changing the database connection must reset all caches
- This needs to be checked if this fully solves the problem
- 10:52 AM bug #5710 (Resolved): Changing the database connection must reset all caches
- There is a cache also in TermManager !!!
This is currently not emptied when connecting to a new datasource.
I a... - 10:32 AM bug #5710: Changing the database connection must reset all caches
- It looks like emptying the cache is done in CdmStoreConnector in this line
~~~
CdmStore.setInstance(applicationCo... - 10:51 AM Revision 83d93c4c (cdmlib): cleanup
- 10:50 AM Revision 9d700cfc (taxeditor): ref #5710 add reset to TermManager after reconnect
- 10:49 AM Revision 16cafda4 (taxeditor): cleanup
- 09:40 AM Revision e6c92114 (cdmlib): try to improve DefinedTermBase.clone()
- 09:30 AM Revision dd06fef0 (taxeditor): remove @Component annotation from CdmServiceCacher
- 09:15 AM Revision 8e8c7741 (taxeditor): cleanup
- 08:57 AM Revision 321468f8 (taxeditor): remove springframework.context 3.2.2 from taxeditor.tests (cont.)
- 08:49 AM Revision f63b9760 (taxeditor): remove springframework.context 3.2.2 from taxeditor.test
- 01:15 AM Revision 55a5d551 (cdmlib-apps): ref #9145 add IpniSourcesImport for E+M IPNI data
07/10/2020
- 11:05 PM Revision 2ef06d1e (cdmlib): cleanup
- 10:35 PM Revision fa073bc8 (cdmlib): improve generics for list... and findTaxaByName
- 09:40 PM bug #9145 (Closed): Add sources to E+M IPNI distribution data
- ... imported by #8612
- 07:50 PM task #9144 (New): Enable org.eclipse.jetty.io.ConnectionStatistics jmx bean and collect request statistics with collectd
- 1. Enable org.eclipse.jetty.io.ConnectionStatistics jmx bean https://www.eclipse.org/jetty/documentation/current/stat...
- 06:45 PM bug #9143: Distribution data sources are missing if multiple distributions exist
- so, jetzt seh ich das ein bisschen genauer. Das Problem ist, dass es sich um aggregierte Daten handelt:
: Distribution data sources are missing if multiple distributions exist
- AM:
also da sind in der DB auch keine Quellen dran, da kann im Portal auch nichts rauskommen.
Übrigens sehen di... - 05:18 PM bug #9143 (Closed): Distribution data sources are missing if multiple distributions exist
- Distribution data sources are missing if multiple distributions exist for the same area and the same status. This is ...
- 04:48 PM feature request #9137: IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
- RH:
ihr schraubt noch an der Darstellung der Metadaten. Allerdings weiß ich nicht, wie weit Details diskutiert wor... - 10:54 AM feature request #9137 (Feedback): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
- All image metadata (EXIF, IPTC, ...) is extracted by the cdmlib. The data portal only receives this data.
So the pr... - 04:43 PM bug #9142 (Closed): The Agent search dialog shows duplicated entries
- This happens in caryo_spp.
Things like this sometimes happen due multiple language representations of a term which... - 04:29 PM Revision 0365ce03 (cdmlib-apps): ugrade version in cdmlib-app poms
- 04:12 PM task #9141 (New): setup IP connection rate limiting per IP address
- The production server frequently is brought to its limit by clients sending as too many request per second
Solutio... - 04:08 PM bug #9140 (Resolved): Deleting an image forgets moving operation
- If I move an image in the taxon media view and then also delete an image and then save the movement is not stored but...
- 04:02 PM feature request #9139 (New): When deleting a taxon with images the configuration should also handle the image
- Currently the configuration is only about taxon and name attributes and there relations.
But often media are only ... - 03:37 PM Revision 5cea7914 (cdmlib): ref #9138 add ignore docu to ignored test in BioCaseQueryServiceWrapperTest
- 03:37 PM Revision 9b778698 (cdmlib): cleanup
- 03:20 PM task #9138: Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId()
- AM:
wie ... erwähnt, funktioniert bei uns gerade ein Biocase Test nicht, weil wohl ein Record nicht gefunden wird... - 03:18 PM task #9138 (Closed): Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId()
- The test has been set to ignore because 1 of the 2 specimen does not exist anymore in the original data.
So we nee... - 11:45 AM bug #9000 (Closed): UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
- no more problems
- 11:33 AM bug #9000: UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
- Yes this should be fixed by the attached changesets. Please review.
- 10:46 AM bug #9000 (Resolved): UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
- Hi Andreas, I guess this is solved already.
07/09/2020
- 08:29 PM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- No, for TDWG areas the mapping is not stored in annotations but is hardcoded in the EditGeoServiceUtilities class. Se...
- 08:12 PM feature request #9137 (Closed): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
- The UV reads and displays most the EXIF metadata of an image. However, to me is not clear if this is also the case fo...
- 07:44 PM bug #9136 (New): Make Institution creatable where needed
- In the rights section (supplemental data) it is possible to add an institution as rights owner (which makes sense as ...
- 03:24 PM feature request #9134: Rule based creation of additional media representations "on the fly"
- **TODO**: Skip the creation of a MediaRepresentation if a part with exactly the same URL already exists.
- 11:28 AM feature request #9134: Rule based creation of additional media representations "on the fly"
- please review
- 11:20 AM feature request #9134: Rule based creation of additional media representations "on the fly"
- A set of generic transformation rules for the BGBM digilib server rules will be stored in each db. This has been done...
- 11:11 AM feature request #9134 (Resolved): Rule based creation of additional media representations "on the fly"
- Applied in changeset commit:cdmlib|2a4ebda1f53750568311f67326e16fb4e3d7fa2a.
- 11:38 AM feature request #9135 (New): All media related web service end points with MediaUriTransformation and/or bestMatchingRepresentation filter
- At the time being, only some web service endpoints can filter media representation which meets requirements for size ...
- 11:26 AM Revision 2f0cabf1 (cdmlib): fix #9134 solving merge conflict and avoiding field solving serialization in SearchReplace
- 11:11 AM Revision 2a4ebda1 (cdmlib): fix #9134 MediaUriTransformation for rule based creation of additional media representations 'on the fly'
07/08/2020
- 06:37 PM bug #9133: cdm_taxontree active taxon is focused after page reload
- Andreas Kohlbecker wrote:
> 1. open http://flora-of-cyprus.eu/cdm_dataportal/taxon/e9925386-b197-4d81-a4fc-137ea96e6... - 01:29 PM bug #9133 (New): cdm_taxontree active taxon is focused after page reload
1. open http://flora-of-cyprus.eu/cdm_dataportal/taxon/e9925386-b197-4d81-a4fc-137ea96e6b4f/images
2. reload the p...- 06:26 PM Revision ebf4cc77 (taxeditor): update httpmime to 4.5.12
- 06:05 PM Revision 09522b16 (taxeditor): update to httpclient 4.5.12 (cont.)
- 05:57 PM Revision 3185cbdd (taxeditor): update to httpclient 4.5.12, commons-lang3 3.10 and commons-codec 1.14
- 05:29 PM feature request #9134 (Closed): Rule based creation of additional media representations "on the fly"
- Often only the full sized image URIs are recorded in a db but thumbnail sized images are often required.
Based on... - 05:07 PM Revision ce667d87 (cdmlib): update version for dependencies httpcomponents, commons-lang3, httpcore and commons-codec
- 04:59 PM task #9132 (In Progress): Update cyprus images to Scaler default API and add thumbnails
- ~~~ sql
SELECT Replace(Replace(uri, 'https://pictures.bgbm.org/digilib/Scaler/IIIF/Cyprus!', ''), '/full/full/0/defa... - 04:59 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
- AM:
noch ein „kleiner“ Nachtrag. Es gibt im CDM inzwischen >100 „Bilder“, die in als Datei nicht mehr existieren. ... - 11:52 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Taxon not found: Ophrys kotschyi-sphegodes
- 11:30 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Problem (Could not read block (block start: 14468, block length: 15217440, data length: 65527).) when reading metadat...
- 11:23 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
- Keyword has not correct format and can not be parsed: showing abscission zone for file Bromus_fasciculatus_s_delilei...
- 12:22 PM Revision dd789975 (taxeditor): Revert "remove mysql-connector-java from taxeditor-cdmlib" and use latest mysql-connector version instead
- This reverts commit 439eb660e3682cbdd4dafbeed7dd81ef52e6f326.
- 09:56 AM Revision 40d1f836 (cdmlib-apps): ref #9132 Cyprus images updated for IIIF and Scaler API
- 09:53 AM Revision e7c688e7 (cdmlib-apps): cleanup
- 09:25 AM Revision 6583c830 (cdmlib): preliminary ignore BioCaseQueryServiceWrapperTest
- 09:24 AM Revision 89dad6a3 (cdmlib): cleanup
- 09:18 AM Revision 684783aa (cdmlib): ref #9132 improve length reading for URI based images
07/07/2020
- 08:35 PM task #9132 (In Progress): Update cyprus images to Scaler default API and add thumbnails
- Currently only 1 representation exists (for the full image) using the Scaler IIF API with links like:
https://pict... - 05:05 PM feature request #9131 (Worksforme): Show annotations for teams and persons in PhycoBank portal
- Henning:
Bei einigen Autoren habe ich bereits „Editorial“ Annotations, die noch nicht angezeigt werden (Beispiel... - 03:47 PM Revision d35a91f7 (cdmlib): Revert "Revert "cleanup" and "fix #9129 add AdditionalMediaCopyright preference predicate""
- This reverts commit c209fbc15a181c5be945a00cef29768f468ad12b.
- 03:25 PM Revision c209fbc1 (cdmlib): Revert "cleanup" and "fix #9129 add AdditionalMediaCopyright preference predicate"
- This reverts commit eaf633c931f45f5c95f1656bce0afe7c4c84dc56 and 600a12c7c81c43398ef8ee3e9aaca7d44b2f709e
- 03:16 PM Revision 880b8403 (cdm-dataportal): Merge tag '5.16.1' into develop
- tagging hotfix 5.16.1
- 03:16 PM Revision 4abc915f (cdm-dataportal): Merge branch 'hotfix/5.16.1'
- 03:16 PM Revision b32e80cd (cdm-dataportal): fix #9128 setting for additional copyright statement and display below the universalviewer
- 03:01 PM feature request #9128 (Resolved): Default copyright statement below image viewer
- Applied in changeset commit:cdm-dataportal|3025e3fad159d10338ee136f4b84abe1045230f5.
- 01:35 PM feature request #9128 (Closed): Default copyright statement below image viewer
- For portals using the FSI viewer it was possible to store a default copyright statement in the FSI Server which has b...
- 03:01 PM Revision 3025e3fa (cdm-dataportal): fix #9128 setting for additional copyright statement and display below the universalviewer
- 02:34 PM task #9129: cdm property to store a default copyright statement for media items
- Please review
- 02:27 PM task #9129 (Resolved): cdm property to store a default copyright statement for media items
- Applied in changeset commit:cdmlib|600a12c7c81c43398ef8ee3e9aaca7d44b2f709e.
- 02:15 PM task #9129: cdm property to store a default copyright statement for media items
- I think defaultMediaCopyright(Statement) is better as there are also many other possible types of copyright e.g. on t...
- 01:37 PM task #9129 (Closed): cdm property to store a default copyright statement for media items
- Suggested property names:
* `defaultCopyright`
* `defaultMediaCopyrightStatement`
- 02:26 PM Revision 600a12c7 (cdmlib): fix #9129 add AdditionalMediaCopyright preference predicate
- 02:25 PM Revision eaf633c9 (cdmlib): cleanup
- 01:41 PM task #9130 (New): add default copyright statment to IIIF manifest as attribution to the sequence
A. Prepend to the existing text in `sequence.attribution = ""`
or
B. replace the `sequence.attribution`compl...- 08:30 AM Revision 0e23e026 (cdmlib): cleanup
07/06/2020
- 03:58 PM task #9125 (Closed): Import Flora of Uzbekistan taxon descriptions
- 12:40 PM task #9125 (Closed): Import Flora of Uzbekistan taxon descriptions
- 03:53 PM Revision 593defdd (cdmlib-apps): ref #9041, ref #9049, ref #8996 add create report to Fl. Uzbekistan imports
- 03:52 PM Revision 156f2413 (cdmlib-apps): ref #9125 add UzbekistanDescriptionsActivator
- 03:14 PM Revision 36dd4544 (cdmlib): ref #9025 implement TextDataExcelImport
- 03:13 PM Revision beab7c7b (cdmlib): cleanup
- 12:58 PM Revision 45b0aa5d (cdmlib): cleanup
- 12:58 PM Revision 0109b340 (cdmlib): ref #9049 final changes to Fl. Uzbekistan habitat import (and change column label langauge to default)
- 12:46 PM task #9127 (New): Import Flora of Uzbekistan specimen data
- type specimen and other specimen
- 12:44 PM bug #9126 (Closed): Import Flora of Uzbekistan phenology data
- 12:39 PM bug #9049 (Closed): Import Flora of Uzbekistan taxa habitats
- 10:43 AM bug #9049 (In Progress): Import Flora of Uzbekistan taxa habitats
- 10:42 AM Revision 965ce443 (cdmlib-apps): ref #9049 add Fl. Uzbekistan habitat import activator
- 10:39 AM task #9041 (Closed): Import Flora of Uzbekistan taxa altitudes
- 10:37 AM task #9041 (Resolved): Import Flora of Uzbekistan taxa altitudes
- Applied in changeset commit:cdmlib|49db4e78808aa6e0753412020e0e27895af12626.
- 10:38 AM Revision 8725320d (cdmlib-apps): ref #9041 adapt UzbekistanAltitudeActivator to correct handling for H2
- 10:36 AM Revision 7b58ff14 (cdmlib): ref #9049 first implementation for Fl. Uzbekistan habitat import
- 10:35 AM Revision fd88fb6a (cdmlib): fix #9041 final changes to AltitudeExcelImport
- 10:30 AM Revision 5cf1f8e1 (cdmlib): ref #9061 some further steps for an import analyze framework
- 10:27 AM Revision 49db4e78 (cdmlib): fix #9041 final changes to AltitudeExcelImport
- 10:26 AM Revision 2eb8c59a (cdmlib): cleanup
07/04/2020
- 06:33 PM bug #9124 (Closed): Altitude feature should have [m] as measurement unit by default
- This requires that measurement units are loaded before.
Update script needed - 05:28 PM Revision 525e9751 (cdmlib): fix TimePeriodParserTest for UTF-8
- 05:21 PM Revision 0c0a92d1 (cdmlib-apps): Minor change to GreeceImageActivator
- 05:00 PM Revision fe2939a3 (taxeditor): remove space arround nameInSource in fact label
- 03:17 PM Revision 1da03adc (cdmlib): ref 5752 Revert "update H2 to v1.4.200"
- This reverts commit b23d992e2b6dda7180fd15339dc565c6038bd347.
- 02:54 PM feature request #8978 (Closed): Implement measurement values as BigDecimal
- moved algorithm testing to new ticekt: #9123
Open TaxEditor ticket for matrix editing moved to: #9080 - 02:52 PM task #9123 (Closed): Fix BigDecimal algebra in aggregation algorithms
- see #8978 for details
- 02:40 PM Revision b23d992e (cdmlib): update H2 to v1.4.200
- 02:39 PM Revision 4e0067c2 (cdmlib): cleanup
07/03/2020
- 04:18 PM bug #8310 (In Progress): Issues to solve in E+M shapefile
- 04:15 PM feature request #2489 (Resolved): strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- 04:09 PM feature request #2489: strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- to review:
1. wait until the shapefile is available in the geoserver
2. test manually if the order of polygons w... - 04:08 PM feature request #2489: strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- the merged shapefile has been created an is available at https://github.com/cybertaxonomy/tdwg-area-shapefiles
- 04:14 PM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- I passed this issue to you since I am assuming that the mapping is defined per default for the terms.
I this is no... - 04:13 PM feature request #9122 (Feedback): update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- The csv export of the attribute tables is found at https://github.com/cybertaxonomy/tdwg-area-shapefiles/blob/master/...
- 09:12 AM feature request #9071: Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- This should be fixed now. Please review.
- 09:11 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- Applied in changeset commit:cdmlib|2327c7599e20695ff913cf4289a70e0788ef9599.
- 09:11 AM Revision 7b6bcfa7 (cdmlib): fix UTF8 in TimePeriodParserTest
- 09:11 AM Revision 2327c759 (cdmlib): fix #9071 fix incorrect formatting for empty but not null partials
- 08:52 AM feature request #9101 (Closed): Add feature "Fruiting Period"
- Missing abbreviation is handled in #9121
- 08:51 AM feature request #9121 (Closed): Add abbreviations to Feature
- Currently the term loading for features does not allow abbreviations.
But these are needed e.g. for Flowering peri... - 08:43 AM feature request #8991 (Closed): Add feature "Flowering Period"
- Update script ticket for missing supportsTemporalData on test systems created: #9120
- 08:42 AM task #9120 (Closed): Update script for flowering period supports temporal data
- according to #8991#note-5 some flowering periods on test systems do not yet have the supportsTemporalData flag set. T...
- 08:38 AM bug #9115 (Closed): NPE in reference bulk editor
- 12:29 AM Revision 13a0c855 (taxeditor): cleanup
- 12:29 AM Revision e5a23c6b (taxeditor): ref #5752 remove xom and springfox-swagger-common-2.3.1 and springfox-swagger2-2.3.1
- 12:05 AM Revision 7536e2e2 (taxeditor): ref #5752 remove hibernate-cglib-repack-2.1_3, hibernate-ehcache-5.0.7.Final
- 12:04 AM Revision b31e1c21 (taxeditor): ref #5752 remove dozer-5.3.0
07/02/2020
- 11:55 PM Revision bd41d7a4 (taxeditor): ref #5752 remove spring-security-oauth2 including jackson-mapper-asl and jackson-core-asl
- 11:45 PM Revision ab49c2fa (taxeditor): ref #5752 remove spring-security-web
- 11:36 PM Revision e7ffaed2 (taxeditor): ref #5752 remove spring-modules-cache and dependeny concurrent-1.3.4
- 11:29 PM Revision 6fa33238 (taxeditor): ref #5752 remove javax.servlet-api and spring-webmvc
- 03:53 PM Revision 333c6d77 (taxeditor): improve ping test
- 03:42 PM Revision 6ab24623 (taxeditor): add logging for server ping tests
- 03:26 PM Revision f24afdfe (taxeditor): cleanup
- 03:15 PM Revision 773143f9 (taxeditor): ref #5752 use taxeditor.webapp cdmlib-remote-webapp.war for taxeditor tests
- 02:53 PM Revision e6ec6b67 (taxeditor): reorder the included artifactIds
- 01:44 PM Revision 67e82e6c (taxeditor): remove redundant version for antrun-plugin
- 01:40 PM Revision e2f6663b (taxeditor): ref #5752 add h2-1.4.200 to taxeditor.test
- 01:20 PM Revision c38b8384 (taxeditor): ref #5752 remove easymock-2.3, easymockclassextension-2.3, h2-1.4.190, h2mig_pagestore_addon, hsqldb-2.3.3, junit-benchmarks-0.7.2, ognl-2.6.9, yip-controller-api-redist from taxeditor.cdmlib
- 01:17 PM bug #8310: Issues to solve in E+M shapefile
- shapefiles can be downloaded from http://download.geofabrik.de/europe.html
- 12:45 PM Revision ae1769f4 (taxeditor): ref #5752 remove cdmlib-remote-webapp.war from taxeditor.cdmlib (cont.)
- 12:01 PM Revision 096d7d2f (taxeditor): ref #5752 remove cdmlib-remote-webapp.war from taxeditor.cdmlib (cont.)
- 11:58 AM bug #9099 (Resolved): placemark icon in kml map not clickable
- Applied in changeset commit:cdm-dataportal|720f43681d5eefdc33bd09644d7a0f2efd58c622.
- 11:58 AM Revision 720f4368 (cdm-dataportal): fix #9099 disabling click events for error radius svg paths
- 11:36 AM Revision 93381d65 (taxeditor): ref #5752 remove cdmlib-remote-webapp.war from taxeditor.cdmlib
- 10:49 AM Revision faf4235f (taxeditor): ref #9119: remove update and create datasource from datasource view context menu
- 10:47 AM task #9119 (Resolved): Remove schema create and schema update functionality from datsource view
- please review
- 10:25 AM task #9119 (Closed): Remove schema create and schema update functionality from datsource view
- As now schema creation and schema update can be done via taxeditor-webapp (#9025), too, we do not need it anymore the...
- 09:50 AM feature request #9118 (Resolved): Change p2 update site to https in Taxeditor
- I think we can test this with the nightly builds
- 09:45 AM feature request #9118 (Closed): Change p2 update site to https in Taxeditor
- 09:46 AM Revision 81efea27 (taxeditor): ref #9118 change link to update site to https
- 09:21 AM Revision 5cd207e3 (taxeditor): update mysql-connector to 8.0.20 in taxeditor-webapp
- 09:00 AM feature request #9009 (Closed): Add structure to store media metadata
- The type level java doc regarding auditing was not up to date. I changed this and the ticket can be closed.
- 09:00 AM Revision 439eb660 (taxeditor): remove mysql-connector-java from taxeditor-cdmlib
- 08:59 AM Revision e59aa8bb (cdmlib): ref #9009 updating class doc regarding auditing
- 08:56 AM Revision fc99c3a2 (cdmlib): upgrade mysql-connector to 8.0.20
- 08:44 AM feature request #8134 (Closed): Implement verbatim type information in dataportal
- Andreas Kohlbecker wrote:
>
> So there is one last bit to do here:
>
> * show textual type information in regis... - 08:43 AM feature request #9117 (New): show textual type information in registration page
- last remaining task copied from #8134
- 08:39 AM feature request #9010 (Closed): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- Andreas Müller wrote:
> Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded ... - 08:38 AM bug #9058 (Closed): Hibernate loggs error when creating schema on MySQL due to failing index creation
- yes in deed!
- 08:37 AM bug #8682 (Closed): cdm-server debian packages configured for jemalloc
- `LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libjemalloc.so.1` removed from all servers
07/01/2020
- 11:00 PM Revision 1fd65fb3 (taxeditor): remove xstream and dependencies xpp3(_min) and xmlpull from taxeditor.cdmlib plugin
- 10:54 PM Revision 89930bbc (cdmlib): cleanup
- 10:54 PM Revision c47aa823 (cdmlib): Upgrade xstream from 1.4.7 to 1.4.12
- 10:51 PM Revision e056c52c (cdmlib): remove commented db dependencies from remote pom
- 03:06 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
- Note2: In the TaxEditor most elements implementing such single source refer to ReferencedEntityBase/IReferencedEntity...
- 02:58 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
- Note: At the moment nomenclatural reference is not really a source yet but nom ref and nom source exist in parallel. ...
- 01:05 PM feature request #9116 (Closed): Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
- e.g TaxonName.nomenclaturalSource and TaxonName.source. For a complete list of all such places see #6581
Nomenclat... - 01:21 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> Katja Luther wrote:
> > For terms we have to have a deeper look because inspecting the vola... - 12:16 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Katja Luther wrote:
> For terms we have to have a deeper look because inspecting the volatileCache shows a lot of te... - 12:15 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Katja Luther wrote:
> Another thing I recognized, when entering a nomenclatural reference in the freetext editor for... - 11:57 AM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- 11:57 AM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- For terms we have to have a deeper look because inspecting the volatileCache shows a lot of terms of type UNKNOWN.
... - 09:31 AM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> > > Please decide who wants to revie... - 11:15 AM feature request #9071 (Feedback): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- 11:12 AM feature request #9071: Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- when deleting the end year (and no month and day was entered) a second "-" respectively a m-dash appears in the forma...
- 09:53 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- 09:47 AM feature request #9071 (Feedback): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
06/30/2020
- 10:15 PM bug #9115 (Resolved): NPE in reference bulk editor
- please review
- 10:14 PM bug #9115 (Closed): NPE in reference bulk editor
- Hallo
im Bulk Editor – ich habe eine Ref. gelöscht, anschl. nicht gespeichert, die nächste gelöscht (nach OK für Spe... - 05:53 PM Revision f719c88c (cdm-server): Merge branch 'release/5.16.0' into develop
- 05:53 PM Revision 7327ff50 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 05:52 PM Revision af1eb1a9 (cdm-server): updating poms for branch'release/5.16.0' with non-snapshot versions
- 05:51 PM Revision c522a018 (cdm-webapp): Merge branch 'release/5.16.0' into develop
- 05:51 PM Revision e0723049 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 05:51 PM Revision 55c17fa5 (cdm-webapp): updating poms for branch'release/5.16.0' with non-snapshot versions
- 05:50 PM Revision 98334074 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.16.0
- 05:26 PM Revision 2676eff5 (cdm-vaadin): Merge branch 'release/5.16.0' into develop
- 05:26 PM Revision 4fa5b615 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 05:25 PM Revision 86f053e0 (cdmlib): use UTF8 for separator in 2 tests
- 05:22 PM Revision 8f5a007c (taxeditor): Merge branch 'release/5.16.0' into develop
- 05:22 PM Revision ddfc908b (taxeditor): Merge branch 'release/5.16.0'
- 05:22 PM Revision a519a001 (cdm-vaadin): updating poms for branch'release/5.16.0' with non-snapshot versions
- 05:22 PM Revision 09aa2c7d (cdm-vaadin): jenkins bumping cdmlib.version to 5.16.0
- 05:22 PM Revision d74de2e7 (cdm-dataportal): Merge branch 'release/5.16.0' into develop
- 05:22 PM Revision eec0f287 (cdm-dataportal): updating poms for branch'release/5.16.0' with non-snapshot versions
- 05:21 PM Revision 824de571 (cdm-dataportal): release-preparation: production level css
- 05:21 PM Revision a2784753 (cdmlib): Updating develop poms back to pre merge state
- 05:21 PM Revision 70091156 (cdmlib): Merge branch 'master' into develop
- 05:21 PM Revision c0d6a0f1 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 05:21 PM Revision dc304ee0 (cdmlib): Merge branch 'release/5.16.0'
- 05:06 PM feature request #6429 (Worksforme): Reconstruct Admin Preferences
- yes this is implemented a long time ago.
- 04:05 PM feature request #6429: Reconstruct Admin Preferences
- Can you check this?
- 04:57 PM Revision 62e21dc4 (cdmlib): updating poms for branch'release/5.16.0' with non-snapshot versions
- 04:53 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Please decide who wants to review this ticket.
> >
> > By ... - 04:26 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> Please decide who wants to review this ticket.
>
> By the way: I adapted the session insp... - 03:14 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Please decide who wants to review this ticket.
By the way: I adapted the session inspection dialog in TaxEditor in... - 03:11 PM bug #7709 (Resolved): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- This should be fixed now. The transient entity cacher handles now both transient and volatile objects via the same UI...
- 04:44 PM Revision bf6a153d (cdm-dataportal): updating poms for 5.17.0-SNAPSHOT development
- 04:43 PM Revision 3354ffdb (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.16.0-SNAPSHOT
- 04:43 PM Revision 9c3bb185 (cdm-webapp): updating poms for 5.17.0-SNAPSHOT development
- 04:43 PM Revision 549fa784 (cdm-webapp): updating poms for 5.16.0 branch with snapshot versions
- 04:42 PM Revision 72018033 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.17.0-SNAPSHOT
- 04:41 PM Revision ace1ec64 (taxeditor): Updated version in pom / project files to taxeditor version : 5.17.0-SNAPSHOT and cdmlib version : 5.17.0-SNAPSHOT
- 04:40 PM Revision dd650a1e (taxeditor): Updated version in pom / project files to taxeditor version : 5.16.0 and cdmlib version : 5.16.0
- 04:40 PM Revision 2b84f0ee (cdm-vaadin): jenkins bumping cdmlib.version to 5.16.0-SNAPSHOT
- 04:40 PM Revision 0d1207fe (cdm-vaadin): updating poms for 5.17.0-SNAPSHOT development
- 04:40 PM Revision 5f3270f9 (cdm-vaadin): updating poms for 5.16.0 branch with snapshot versions
- 04:40 PM Revision 4b51b4a2 (cdm-vaadin): jenkins bumping cdmlib.version to 5.17.0-SNAPSHOT
- 04:40 PM Revision 531d176e (cdm-server): updating poms for 5.17.0-SNAPSHOT development
- 04:36 PM Revision 3903c1b1 (cdmlib): updating poms for 5.17.0-SNAPSHOT development
- 04:25 PM feature request #9111 (Closed): Handle Malformed URIs
- This works well. I created a new ticket for moving the code to cdmlib: #9114
- 03:42 PM feature request #9111 (Resolved): Handle Malformed URIs
- please review.
- 03:41 PM feature request #9111: Handle Malformed URIs
- We already have the UrlUtf8Coder in cdmlib.commons
- 03:40 PM feature request #9111: Handle Malformed URIs
- suggestion of AK:
ich halte es schon für richtig, generell URIs zu verwenden, sollten aber nicht erlaubte Zeichen ... - 03:39 PM feature request #9111 (Rejected): Handle Malformed URIs
- mail WB:
ich habe hier wieder so eine URL die ich nicht als URI abspeichern kann:
https://bioone.org/journals/Cac... - 04:23 PM feature request #9114 (Closed): Handle malformed URIs in user type
- The fix for #9111 should be moved to a new URI user type wrapper that is used instead of the current URI class. Other...
- 04:19 PM bug #9112 (Closed): Widget is disposed when closing factual data view
- Don't know if this is easy to reproduce. But I did not get an exception when closing the facts view.
- 03:46 PM bug #9112 (Resolved): Widget is disposed when closing factual data view
- please review or close the ticket.
- 03:45 PM bug #9112 (Closed): Widget is disposed when closing factual data view
- mail WB:
Hallo, nach dem Schließen des Fact-views nach Eingabe einer Citation beim Speichern des Taxons. Der neue ... - 04:18 PM bug #6276 (Closed): Nomenclatural references show parsed date string instead of publication year
- from what I've seen during the last days, this seems to be solved completely.
- 04:18 PM bug #9113 (Closed): NPE when deleting classification
- This is fixed.
- 03:50 PM bug #9113 (Resolved): NPE when deleting classification
- please review
- 03:48 PM bug #9113 (Closed): NPE when deleting classification
- mail AM:
Hallo,
Beim Löschen einer Classification habe ich den Fehler unten bekommen. Im Code unten wurde wohl ... - 04:14 PM feature request #8585 (Closed): Factual Data View: new DesctiptionElements shoud be selected immediately
- This works very well know. Nice new workflow improvement.
- 04:11 PM bug #9097 (Closed): specimen coordinate links in maps to geohack service broken
- works as expected
- 04:04 PM bug #9102 (Closed): taxonNode status icon breaks sort order in taxontree
- 04:01 PM bug #9095 (Closed): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- 03:46 PM bug #9095 (Resolved): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- 12:25 PM bug #9095 (In Progress): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- the last commit:a8905b5d also causes Problems since `TeamAutoInitializer` needs to distinguish Team and Person to avo...
- 03:37 PM Revision b6bea419 (cdmlib): ref #9095 improving AdvancedBeanInitializer performance by using Optional instead of Exceptions
- 03:36 PM feature request #9078 (Closed): Handle name parsing and deduplication on server side
- Tested:
Authors, the author is correctly deduplicated for persons with same abbrevTitle, also if the already exist... - 03:02 PM feature request #9078: Handle name parsing and deduplication on server side
- This should work now. Can you please review.
- 03:28 PM bug #5710 (In Progress): Changing the database connection must reset all caches
- 03:11 PM Revision d2a8e3bf (cdmlib): ref #9095 falling back to explicite bean property intialization for TeamOrPersonBase
- 02:59 PM Revision cc71e44c (taxeditor): encode invalid character in URI
- 02:54 PM Revision ee500fb8 (taxeditor): ref #9078 fix caching for deduplicated name in ParseHandler
- 02:53 PM Revision 8a286db5 (taxeditor): Exclude ignored entities from session expection
- 02:50 PM Revision 3a6a6dab (taxeditor): cleanup
- 02:49 PM Revision 3fbb8717 (taxeditor): Adapt ICdmEntitySession to new includeIgnored parameter
- 02:45 PM Revision 8e692c4e (cdm-vaadin): adapt EntityCacheDebuggerComponent to new includeIgnored parameter
- 02:40 PM Revision 86d726ac (cdmlib): add includeIgnore parameter to EntityCacherDebugResult and minor refactoring
- 02:40 PM Revision be3c44be (cdmlib): cleanup and improve logging in EntityCacherDebugResult
- 02:31 PM Revision b8404854 (cdmlib): improve logging in CacheLoader
- 01:12 PM feature request #9110 (Feedback): Add additional informations to metadata table of cdmLight
- For the usage of cdmLight in GfBio we need some more information in the metaData table:
* creationDate
* Base URL... - 12:05 PM bug #9109 (Closed): Search button font icon broken
- 
even if https://www.phycobank.org/sites/phycobank/modules/cdm_dataportal/fonts/fontawesome-f... - 11:33 AM bug #8167 (Resolved): Permission denied for Submitter when adding section to newly created journal
- bitte testen
- 11:16 AM EDIT Platform Etablierung task #9108 (Closed): Prepare Kurs Borsch
- Voraussichtlich soll der Kurs von Thomas Borsch wieder stattfinden.
Rechtzeitige Vorbereitung ist wichtig.
**Astr... - 11:09 AM task #9106 (New): Quick person entry via identifier (ORCID, IPNI, ...) for phycobank
- The data entry for persons could be simplified by a mechanism which fetches the details from an authority after entry...
- 10:41 AM task #9105 (Closed): rename NodeSortMode etc to TaxonNodeSortMode
- die Enums NodeSortMode und NodeDtoSortMode sind etwas zu allgemein bennant. Besser: TaxonNodeSortMode und
TaxonNodeD...
06/29/2020
- 11:55 PM Revision cf186d49 (cdmlib): revert load with update only
- 11:08 PM Revision 08fc65ee (cdmlib): revert moving loadRecursive maps and collections
- 10:33 PM Revision dc307095 (cdmlib): remove redundant code (cont.)
- 10:08 PM Revision cd1129cb (cdmlib): remove redundant code
- 06:26 PM Revision 951591a8 (taxeditor): add loading of default language to CdmStoreConnector
- 06:26 PM Revision caceb054 (taxeditor): cleanup
- 06:09 PM Revision 2203967c (cdm-dataportal): ref #9102 proper conversion of block to render array and avoiding duplicate bibliography blocks
- 05:43 PM Revision ab8cbdf4 (taxeditor): upgrading common-beanutils to 1.9.4
- 05:41 PM Revision 7eef3600 (cdmlib): upgrading common-beanutils to 1.9.4 and opting out from BEANUTILS_520
- 05:08 PM Revision faf574aa (cdmlib): adapt Language to store cached default language term locally as static variable
- 05:07 PM Revision 39a33a72 (cdmlib): handle update without recursion correctly in CacheLoader
- 05:04 PM Revision 344a782d (cdmlib): cleanup and rename methods and fix Fixme in ProxyUtils
- 04:37 PM Revision 9a9d9186 (taxeditor): beanutils 1.9.2
- 04:14 PM Revision 525e9e11 (cdmlib): ref #9102 TaxonNodeDto with statusNote, nodeStatus as status and status as TaxonStatus
- 04:13 PM Revision 54164245 (cdm-dataportal): ref #9102 adapting to modified TaxonNodeDto
- 02:40 PM Revision 6157a0af (taxeditor): managing commons-beanutils-1.9.2.jar via maven
- 02:25 PM Revision 687bfc97 (taxeditor): avoid NPE and fix closing of obsolete editors when deleting classification
- 02:03 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
- Katja Luther wrote:
> Andreas Müller wrote:
> > I am sure there is a duplicate ticket for this already. Can you ple... - 01:25 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
- Andreas Müller wrote:
> I am sure there is a duplicate ticket for this already. Can you please check.
I only foun... - 01:24 PM feature request #8585 (Resolved): Factual Data View: new DesctiptionElements shoud be selected immediately
- this is fixed. Please review.
- 01:52 PM Revision a936868b (taxeditor): ref #8585: remove not necessary method
- 01:48 PM Revision ffb73e56 (taxeditor): avoid widget is disposed exception
- 01:22 PM Revision b3860b27 (taxeditor): set selection after facts creation
- 01:10 PM Revision 9b8eb609 (cdm-dataportal): ref #9102 fixing TaxonNode.source footnote missing & generalizing creation of bibliography block
- 12:58 PM Revision 713fff1d (taxeditor): cleanup
- 12:47 PM Revision d4180c93 (cdmlib): ref #9078 allow ignoring recursive loading of terms (cont.)
- 12:46 PM Revision e0788e20 (cdmlib): cleanup
- 12:43 PM Revision 323606bc (cdmlib): rename internal loadRecursive calls to distinguish them more clearly
- 12:28 PM Revision 7ccb6888 (cdm-dataportal): whitespace
- 11:54 AM Revision 3049fdcd (cdm-dataportal): ref #9102 convering both cases for taxon in current classification test: TaxonNode and TaxonNodeDto
- 11:10 AM Revision 8db5e42f (cdm-dataportal): adapting tests
- 09:49 AM Revision 9722b576 (cdmlib): Revert "upgrade commons-beanutils from 1.9.2 to 1.9.4"
- This reverts commit 8f08a3aec70ba12d48ab061327524a69d766a109.
- 09:36 AM Revision 8c2c68ce (taxeditor): fix NPE in reference bulk editor
- 09:24 AM Revision 68405a5a (taxeditor): cleanup
- 09:24 AM Revision 0dd61d7a (taxeditor): rename deproxy to deproxyIfInitialized
- 09:22 AM Revision 18efc5a7 (cdmlib): rename deproxy to deproxyIfInitialized
- 02:31 AM Revision 7c37f7fa (taxeditor): cleanup
- 02:29 AM Revision fd280052 (taxeditor): cleanup CdmEntitySessionAwareTest
- 12:58 AM Revision efd33966 (cdm-vaadin): rename CdmCacher to CdmCacherBase
- 12:57 AM feature request #9078 (Resolved): Handle name parsing and deduplication on server side
- Applied in changeset commit:taxeditor|b6f9eb474c27f732c7f2cdc0d0fd5a6a5e45d174.
- 12:56 AM Revision b6f9eb47 (taxeditor): fix #9078 finally switch to new deduplication handling (but keep old code until fully reviewed)
- 12:52 AM Revision c86eab33 (taxeditor): ref #9078 include Representation to permanent cache
- 12:51 AM Revision 42d09199 (taxeditor): cleanup
- 12:50 AM Revision 71f697d9 (taxeditor): rename CdmCacher to CdmCacherBase
- 12:48 AM Revision 0c63c580 (cdmlib): ref #9078 allow ignoring recursive loading of terms
06/28/2020
- 11:47 PM Revision 1edf162a (cdmlib): improve logging for CacheLoader
- 10:06 PM Revision 4b2b6fc7 (cdmlib): rename CdmCacher to CdmCacherBase
- 10:02 PM Revision 22c3bea0 (cdmlib): renaming "putToCache" and "entityAlreadyVisisted" "classFields", fix logging text and extract method for field handling
- 08:51 PM Revision 7c0aeabf (cdmlib): cleanup
- 04:12 PM Revision 36b21d6e (taxeditor): cleanup
- 03:30 PM Revision b31b98ce (taxeditor): remove unitils dependencies
- 03:23 PM Revision 8d5dc888 (taxeditor): upgrade commons-beanutils from 1.9.2 to 1.9.4
- 03:00 PM Revision 8f08a3ae (cdmlib): upgrade commons-beanutils from 1.9.2 to 1.9.4
06/27/2020
- 06:49 PM Revision ec6ac40a (taxeditor): cleanup getService
- 06:33 PM bug #9070: Adapt preference page to feature.isAvailableFor...
- Looks like this was fixed during 5.15 already. Should we move it back?
- 06:29 PM Revision 4b24820e (cdmlib): ref #9071 improve with-month-name period parsing
- 06:05 PM Revision 287b0222 (taxeditor): ref #9071 update MANIFEST.MF to include format.common package
- 11:54 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- An ExtendedTimePeriodFormatter exists now. Details might be improved in future.
I implemented formatters for all 3 T... - 11:52 AM Revision b93b6f69 (taxeditor): ref #9071 use ExtendedTimePeriodFormatter in DescriptionHelper and improve formatting for CategoricalData
- 11:45 AM Revision 2f4f765e (cdmlib): add preferred languages to DesciptionElementFormatterBase
- 11:20 AM Revision e25cc9dd (cdmlib): cleanup
- 11:20 AM Revision 3ee87683 (cdmlib): ref #9071 add formatter for VerbatimTimePeriod
- 11:08 AM Revision dea49164 (cdmlib): ref #9071 add formatter in ExtendedTimePeriod.toString
- 11:01 AM Revision 16f88eb2 (cdmlib): cleanup
- 11:01 AM Revision d846e295 (cdmlib): ref #9071 add additional ExtendedTimePeriodFormatter test
- 10:51 AM Revision 6d7ea74e (cdmlib): ref #9071 create TimePeriodFormatter and ExtendedTimePeriodFormatter and move toString methods
- 10:47 AM Revision 80466da5 (cdmlib): move some formatter tests to correct package
- 09:45 AM Revision 8fe64a0b (cdmlib): ref #9071, ref #6276 improve TimePeriod parsing with continued
- 09:44 AM Revision 20e45ee8 (cdmlib): cleanup
- 09:09 AM Revision e90c7158 (cdm-dataportal): ref #6276, ref 9071 adapt dataportal tests to new TimePeriod formatting (cont.)
- 09:06 AM bug #6276 (Resolved): Nomenclatural references show parsed date string instead of publication year
- This should be fixed now.
- 09:03 AM Revision def46519 (cdmlib): ref #9071, ref #6276 improve TimePeriod parsing for periods with shared year or month and some other
- 08:43 AM Revision b0ceec1a (cdm-dataportal): ref #6276, ref 9071 adapt dataportal tests to new TimePeriod formatting
06/26/2020
- 11:21 PM Revision b486d565 (cdmlib): ref #7709 rename newEntity to volatileEntity
- 11:12 PM Revision ac3d6e3a (taxeditor): ref #7709 use load() for newEntities
- 11:11 PM Revision 997dddd5 (taxeditor): cleanup
- 11:10 PM Revision 8991d6e9 (cdmlib): ref #7709 rename addNewEntity to putNewEntity and check for existing entity
- 11:09 PM Revision b4c19aff (cdmlib): cleanup
- 11:09 PM Revision d7be01af (cdmlib): ref #7709 rename putMethods in cacher
- 11:05 PM Revision 1d2c4048 (cdmlib): ref #9104 add NatrualLanguageTerm to hibernate.cfg.xml and recompile model cache
- 10:25 PM feature request #9104 (New): NaturalLanguageTerm
- Add NaturalLanguageTerm to the loaded terms. Currently it is loaded on the fly (which creates overhead in TaxEditor a...
- 08:50 PM Revision 8d388c9a (cdmlib): add newEntitiesMap.clear to Cacher.clear
- 08:50 PM Revision b51bec3a (cdmlib): rename load to put
- 08:50 PM Revision db6e8702 (cdmlib): cleanup
- 07:36 PM Revision 56a4e7d4 (taxeditor): cleanup
- 07:35 PM Revision 5b336515 (taxeditor): removing unnecessary class parameters from deproxy and remove usage of load(cdmBase, clazz)
- 06:48 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- By the way, there is already a UUID based cacher in cdmlib-services (eu.etaxonomy.cdm.api.cache.CdmCacher)
- 05:44 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- To me it is not clear anymore, why the CdmTransientEntityCacher should handle only transient but not volatile objects...
- 05:46 PM Revision 281ec7b2 (cdm-dataportal): ref #9102 adapting tests
- 03:52 PM bug #9102 (Resolved): taxonNode status icon breaks sort order in taxontree
- 03:51 PM Revision f959fedb (cdmlib): ref #9102 using TaxonNodeDto instead of TaxonNodeDtoBeanProcessor for multiple webservices and adding sortMode parameter - bug fix
- 03:32 PM bug #9103 (Feedback): missing exception handling in TaxoNodeDto
- 03:32 PM bug #9103: missing exception handling in TaxoNodeDto
- @Katja: has far as I could see, this stems from you, was there any urgent reason for this?
- 03:31 PM bug #9103 (Closed): missing exception handling in TaxoNodeDto
- see
~~~java
try{
TaxonNode parent = taxonNode.getParent();
parentUUID = parent... - 03:28 PM Revision 562acef2 (cdmlib): using TaxonNodeDto instead of TaxonNodeDtoBeanProcessot for multiple webservices and adding sortMode parameter
- 03:27 PM Revision 64cfdac1 (cdm-dataportal): switching portal to real TaxonNodeDTOs
- 12:10 PM Revision 42c3d8cd (cdmlib): cleanup
- 11:51 AM Revision c844706d (taxeditor): fix possible concurrent modification exception
- 11:20 AM feature request #3097 (Worksforme): disable editors if a user has insufficient grants for a taxon or taxon node.
- Andreas Müller wrote:
> I am not sure if I understand what is meant here with "enabled".
> Currently it seems possi... - 10:08 AM bug #9092 (Closed): Multiple Representation Exception when editing factual data
- The problems were caused by a missing modelCache update, this is done and it works as expected.
- 03:04 AM Revision ac1b1365 (cdmlib): update cached cdm model to 5.15.2
- 03:03 AM Revision 6197d70a (cdmlib): cleanup
- 01:47 AM Revision 62661acc (taxeditor): ref #9071 use toString() instead of getTimePeriod()
- 01:46 AM Revision 6876aa51 (cdmlib): ref #9071 remove ExtendedTimePeriodPartialFormatter which is no longer needed
- - ExtendedTimePeriod.toString() should be enough
- 01:43 AM Revision b3b61969 (taxeditor): cleanup
- 01:42 AM Revision ffd7b090 (taxeditor): ref #9071 use getTimePeriod instead of ExtendedTimePeriodPartialFormatter
- 01:22 AM Revision fddcac5e (cdmlib): ref #9071, ref #6276 fix order of TimePeriodFormatting to DD MMM YYYY (cont.)
- 01:21 AM Revision f7d206b6 (cdmlib): cleanup
- 01:20 AM Revision ce666ef3 (cdmlib): ref #9071, ref #6276 fix order of TimePeriodFormatting to DD MMM YYYY
- 12:58 AM bug #6276 (In Progress): Nomenclatural references show parsed date string instead of publication year
- 12:56 AM Revision d6eec685 (cdmlib): ref #9071 use new partial formatting also in ExtendedTimePeriodPartialFormatter
- 12:50 AM Revision fb5527b8 (cdmlib): cleanup
- 12:47 AM Revision bf3b1132 (cdmlib): ref #9071, ref #6276 Change TimePeriodFormatting to YYYY-MMM-DD
06/25/2020
- 07:03 PM feature request #9101: Add feature "Fruiting Period"
- Applied in changeset commit:cdmlib|33ab47c40c8cc58e91294096f72d770f71d398b8.
- 06:54 PM feature request #9101 (Resolved): Add feature "Fruiting Period"
- 06:23 PM feature request #9101 (Closed): Add feature "Fruiting Period"
- similar to flowering period #8991
- 07:03 PM Revision 33ab47c4 (cdmlib): fix #9101 fix compile error
- 06:50 PM feature request #8991: Add feature "Flowering Period"
- Applied in changeset commit:cdmlib|25e3014d375dbc2951b2ff2053a1925e2c5a8a47.
- 06:42 PM feature request #8991: Add feature "Flowering Period"
- Andreas Müller wrote:
> Still need to check if supportsTemporalData is autoamtically created on production (on test ... - 06:50 PM Revision 6f4cffe6 (cdmlib): cleanup
- 06:50 PM Revision 25e3014d (cdmlib): fix #8991 fruiting period added
- 06:47 PM bug #9092: Multiple Representation Exception when editing factual data
- As the problems comes with source and referenceForParentChildRelation I tried to revert the changes for the reference...
- 12:47 PM bug #9092: Multiple Representation Exception when editing factual data
- deeper debugging results that the multiple representation does not come from the sec reference but from the descripti...
- 06:29 PM bug #9102 (Closed): taxonNode status icon breaks sort order in taxontree
- for example in the cihorieae portal *Incertae sedis* and *Nomina excludenda* should come as last in the tree:
 in portal/description/distributionInfoFor/{uuid}
- moreover the whole reference object as serialized in webservice responses can be simplified a lot. The `authorship` ...
- 05:57 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- the cause for this bug was not related to #7331 but is caused by an unexpected behavior of ` AdvancedBeanInitializer....
- 01:08 PM bug #9095 (Resolved): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- solved by catching the exception in the `TeamOrPersonBaseBeanProcessor` since a real solution (#7331) may need some m...
- 12:13 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- this problem is potentially highly related to #7331 since the init strategy includes the `sources.citation.authorshi...
- 11:59 AM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- it apends at `DistributionInfoDTO.tree.children.children.children.data.sources.citation.authorship.nomenclaturalTitle...
- 08:36 AM bug #9095 (Closed): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- test links:
* https://europlusmed.org/cdm_dataportal/taxon/7c8012f2-bbda-4e51-83cd-39a06994098c
* http://cichorie... - 06:15 PM feature request #9100 (New): Improve temporal facts data model
- AM (an WGB):
ich [bin im Cubaportal] auf die Phenology-Daten gestolpert.
Z.B. http://portal.cybertaxonomy.org/... - 06:10 PM Revision e7f3789b (cdm-dataportal): refactoring theme_cdm_reference to cdm_reference_markup
- 05:40 PM Revision a8905b5d (cdmlib): reverting commit last for ref #9095, ref #9096, ref #7331 for a better solution
- 01:59 PM Revision 927a1c72 (cdmlib): ref #7331 restoring lost test methods comment
- 01:06 PM bug #9096 (Duplicate): LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon()
- 01:05 PM bug #9096: LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon()
- duplicate of #9095
- 08:44 AM bug #9096 (Duplicate): LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon()
test link https://europlusmed.org/cdm_dataportal/taxon/7c8012f2-bbda-4e51-83cd-39a06994098c
~~~
08:42:18.346 ...- 12:22 PM Revision af4969c8 (cdmlib): ref #9095, ref #9096 catching LIEs at Team.members in TeamOrPersonBaseBeanProcessor to handle problems potentially originating from bug ref #7331
- 12:16 PM task #7330: TitleAndNameCacheAutoInitializer misses out References
- potentially a duplicate of #7331 - needs to be checked, though!!!
- 11:38 AM bug #9099 (Closed): placemark icon in kml map not clickable
- as long the error radius diameter exceeds the placemark icon the icon can not be clicked
http://test.e-taxonomy.e... - 11:35 AM bug #9097: specimen coordinate links in maps to geohack service broken
- example link for testing http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/ec22a1f9-9fd5-4cc...
- 11:32 AM bug #9097 (Resolved): specimen coordinate links in maps to geohack service broken
- Applied in changeset commit:cdmlib|00a1503b7cf1c77079368394dfcc3375c6d733f9.
- 11:23 AM bug #9097 (In Progress): specimen coordinate links in maps to geohack service broken
- 09:05 AM bug #9097 (Closed): specimen coordinate links in maps to geohack service broken
- the service api has changed, links should now be like
https://geohack.toolforge.org/geohack.php?language=en¶ms... - 11:32 AM Revision 00a1503b (cdmlib): fix #9097 updating to new geohack API
- 10:47 AM Revision 652b7ffc (cdm-dataportal): typos
- 01:56 AM Revision 84bff3eb (taxeditor): cleanup
- 01:55 AM Revision 1871c770 (taxeditor): revert removing findWithUpdate
- 01:53 AM Revision 2d3429b0 (cdmlib): revert removing findWithUpdate
- 01:11 AM Revision 3886664b (taxeditor): cleanup
- 12:48 AM Revision 31cfe10f (taxeditor): javadoc
- 12:47 AM Revision 270dbad4 (taxeditor): remove findWithUpdate from CommonService
- 12:40 AM Revision 604437b2 (cdmlib): remove redundant method findWithUpdate() from ICommonService (use find() instead).
- 12:39 AM Revision d8792e71 (cdmlib): cleanup
- 12:17 AM Revision e0cc4f18 (taxeditor): ref #9078 further improve null entity handling in ConversationalTransientEntityCacher (just in case)
- 12:10 AM Revision d6969ebf (taxeditor): ref #9078 fix null entity handling in ConversationalTransientEntityCacher
06/24/2020
- 11:53 PM Revision d6d15f6c (taxeditor): ref #9078 remove commented code in ParseHandler
- 11:53 PM Revision ffe41dcd (taxeditor): cleanup
- 11:49 PM Revision 2d71110d (taxeditor): ref #9078 adapt ParseHandler to new serverside deduplication
- 11:48 PM Revision 02e380e6 (taxeditor): ref #9078 improve UpdateResult handling in CdmTransientEntityCacher
- - include result entity to the updated objects
- load updated objects also if they their ID does not yet exist in Ca... - 11:48 PM Revision d990fa03 (taxeditor): cleanup
- 11:35 PM Revision a19d8b1b (cdmlib): cleanup
- 10:55 PM Revision 6f33eb6e (taxeditor): cleanup
- 09:53 PM bug #9092: Multiple Representation Exception when editing factual data
- Katja Luther wrote:
> mail Sophia:
>
> hab gerade noch festgestellt, dass der Fehler nur bei Arten kommt, bei G... - 09:38 PM bug #9092: Multiple Representation Exception when editing factual data
- Now I could reproduce the exception and it was again the sec reference of the taxon.
The steps to reproduce are:
... - 09:29 PM bug #9092: Multiple Representation Exception when editing factual data
- mail Sophia:
Generell übertrage ich halt im Moment immer von der Druckversion der Flora Cuba die Daten. Also norma... - 02:51 PM bug #9092: Multiple Representation Exception when editing factual data
- In this case the reference which has multiple representations was [Reference [type=WebPage, title=The Spermatophyta o...
- 10:56 AM bug #9092: Multiple Representation Exception when editing factual data
- mail Sophia:
es passiert sowohl wenn ich nur eine Sache eingegeben habe als auch wenn es mehrere waren, normalerwe... - 06:59 AM bug #9092 (Closed): Multiple Representation Exception when editing factual data
- Hallo liebes Edit Team,
seit dem Update bekomme ich diese Fehlermeldung super häufig wenn ich bei den Factual Data i... - 03:45 PM task #9094 (Closed): Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource
- This is only required on test servers which have been updated during development of 5.15. Most DBs have already been ...
- 12:24 PM bug #9093 (New): Exception after deleting two references
- mail WB:
Hallo
im Bulk Editor – ich habe eine Ref. gelöscht, anschl. nicht gespeichert, die nächste gelöscht (nac... - 12:11 PM Revision 81443195 (cdm-dataportal): improving labels for image viewers, adding description
- 11:55 AM Revision 97104b10 (cdm-dataportal): Merge tag '5.15.1' into develop
- tagging release 1.15.1
- 11:54 AM Revision 5426f097 (cdm-dataportal): Merge branch 'hotfix/5.15.1'
- 11:54 AM Revision 3a81b245 (cdm-dataportal): ref #8134 using other error message channel
- 11:26 AM Revision ff28ae45 (cdmlib): ref #9010 proper initialization of TaxonNode.source
- 11:25 AM Revision 178d1ae6 (cdm-dataportal): ref #9010 solving some problems regarding sources and annotations for TaxonNodes
- 10:56 AM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded and unplaced taxa should ...
- 06:58 AM feature request #7580: User wishes: CharacterMatrix
- these issues are not solved yet.
- 06:56 AM task #8130: Check if related feature data is cleared when supported facts type is changed
- we need to decide how to handle this.
06/23/2020
- 11:51 PM Revision cfc9fe89 (taxeditor): cleanup
- 11:48 PM Revision a0cc1cd6 (cdmlib-apps): ref #9041 adapt UzbekistanAltitudeActivator to latest changes
- 11:48 PM Revision f9582330 (cdmlib-apps): adapt some Activators to new permission package position
- 11:46 PM Revision 968fbd9e (cdmlib-apps): cleanup
- 10:32 PM Revision 9803e871 (cdm-dataportal): adding missing space in citation - adapting tests
- 04:20 PM feature request #8134 (Resolved): Implement verbatim type information in dataportal
- 04:19 PM feature request #8165: enable logback jmx for cdm-server
- we switched to logback for the cdm-server
- 03:16 PM feature request #9064 (Closed): Add ExternalLinks to IdentifiableEntities
- 03:15 PM feature request #9090: Implement external links for identifiable entities in TaxEditor
- Once this is implemented for references we may further discuss #7984
- 03:08 PM feature request #9090 (New): Implement external links for identifiable entities in TaxEditor
- This is most important for references.
Minimum implementation should be in supplemental data view.
But at least f... - 03:13 PM feature request #9091 (New): Show external links for identifiable entites in dataportal
- Most important for references
- 03:02 PM feature request #9043 (Closed): Add feature "Altitude"
- 03:01 PM task #9037 (Closed): Remove old Feature.supportedXXX columns
- 03:01 PM task #9036 (Closed): Remove old TaxonNode.unplaced/doubtful/excluded columns
- 03:00 PM feature request #9004 (Closed): Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
- 02:43 PM Revision a866450a (cdm-server): Merge branch 'release/5.15.0' into develop
- 02:43 PM Revision 0ca65bf5 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 02:42 PM Revision 259163e9 (cdm-server): updating poms for branch'release/5.15.0' with non-snapshot versions
- 02:42 PM Revision e4627748 (cdm-webapp): Merge branch 'release/5.15.0' into develop
- 02:42 PM Revision db4a0cdc (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 02:41 PM Revision 89552d01 (cdm-webapp): updating poms for branch'release/5.15.0' with non-snapshot versions
- 02:41 PM Revision d8109b58 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.15.0
- 02:35 PM Revision 6d1d2edb (cdm-vaadin): Merge branch 'release/5.15.0' into develop
- 02:35 PM Revision 32b08ce0 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 02:31 PM Revision 6b943263 (cdm-vaadin): updating poms for branch'release/5.15.0' with non-snapshot versions
- 02:31 PM Revision 921f557e (cdm-vaadin): jenkins bumping cdmlib.version to 5.15.0
- 02:31 PM Revision c6e1129a (taxeditor): Merge branch 'release/5.15.0' into develop
- 02:31 PM Revision 146177b1 (taxeditor): Merge branch 'release/5.15.0'
- 02:30 PM Revision 86229aab (cdm-dataportal): Merge branch 'release/5.15.0' into develop
- 02:30 PM Revision 99cdc7e2 (cdm-dataportal): updating poms for branch'release/5.15.0' with non-snapshot versions
- 02:30 PM Revision 68527ca1 (cdm-dataportal): release-preparation: production level css
- 02:28 PM Revision c60806e6 (cdmlib): Updating develop poms back to pre merge state
- 02:28 PM Revision 7e1550c6 (cdmlib): Merge branch 'master' into develop
- 02:28 PM Revision 98a29650 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 02:27 PM Revision 2a1dcb48 (cdmlib): Merge branch 'release/5.15.0'
- 02:18 PM bug #9055 (Feedback): Relabel "Type Designation" to "Type Information"
- Needs final discussion
- 02:08 PM Revision d80ee113 (cdmlib): updating poms for branch'release/5.15.0' with non-snapshot versions
- 02:01 PM Revision 652a9ae4 (taxeditor): Updated version in pom / project files to taxeditor version : 5.16.0-SNAPSHOT and cdmlib version : 5.16.0-SNAPSHOT
- 02:00 PM Revision dbe17643 (taxeditor): Updated version in pom / project files to taxeditor version : 5.15.0 and cdmlib version : 5.15.0
- 01:43 PM task #9017 (Resolved): Update image link for FoG Willing images
- 01:42 PM Revision 670c32ca (cdm-dataportal): updating poms for 5.16.0-SNAPSHOT development
- 01:41 PM Revision 0cce624e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.15.0-SNAPSHOT
- 01:41 PM Revision 131402e0 (cdm-webapp): updating poms for 5.16.0-SNAPSHOT development
- 01:41 PM Revision 3d9191b1 (cdm-webapp): updating poms for 5.15.0 branch with snapshot versions
- 01:41 PM Revision 0722cc46 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.16.0-SNAPSHOT
- 01:37 PM Revision b4c7e84e (cdm-vaadin): jenkins bumping cdmlib.version to 5.15.0-SNAPSHOT
- 01:37 PM Revision 83c5ba8d (cdm-vaadin): updating poms for 5.16.0-SNAPSHOT development
- 01:37 PM Revision e8f112a8 (cdm-vaadin): updating poms for 5.15.0 branch with snapshot versions
- 01:37 PM Revision 8937df82 (cdm-vaadin): jenkins bumping cdmlib.version to 5.16.0-SNAPSHOT
- 01:37 PM Revision 6a03a31e (cdm-server): updating poms for 5.16.0-SNAPSHOT development
- 01:19 PM Revision 4f768aa9 (cdmlib): updating poms for 5.16.0-SNAPSHOT development
- 01:19 PM Revision 558fcaf1 (cdmlib): updating poms for 5.15.0 branch with snapshot versions
- 01:19 PM Revision 394d8d07 (cdm-dataportal): adding missing space in citation
- 01:07 PM Revision e5a89a58 (cdm-dataportal): ref #8134 deterministic sort order for type designations - bug fix
- 12:52 PM Revision f639f3b7 (cdm-dataportal): ref #8134 deterministic sort order for type designations - adapting test
- 12:52 PM Revision 04d5812b (cdm-dataportal): ref #8134 deterministic sort order for type designations
- 10:09 AM Revision d4e27dd5 (cdm-dataportal): adapting test to changes made in a6c4c53c
- 09:30 AM Revision 867d1f58 (cdm-dataportal): ref #8134 fixing missing render_type_designations()
- 09:06 AM Revision aab00a6d (cdmlib): ref #9078, ref #9085 fix deduplication of nom.ref. author
- 08:54 AM Revision 4eab6eeb (cdm-dataportal): moving methods from theme to inc file
- 08:36 AM Revision fcf4e915 (cdmlib): cleanup
- 08:36 AM Revision a9bd2165 (cdmlib): ref #9078, ref #9085 improve deduplication of teams nom.ref. authors
06/22/2020
- 11:46 PM Revision 45ecfdaa (cdmlib): cleanup
- 11:25 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Hmm, this behavior definitely needs further discussion. I do not remember that we had decided to implement it this wa...
- 10:57 PM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- However, it was somehow difficult to test this ticket as the behavior was not always reproducable. One time selecting...
- 10:28 PM feature request #9084: Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- Katja Luther wrote:
> Did you try this with different descriptions?
> I never got this exception, maybe you remove... - 09:41 PM feature request #9084: Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- Did you try this with different descriptions?
I never got this exception, maybe you removed the descriptionElementS... - 08:08 PM feature request #9084 (Feedback): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- When I tried to delete a description from matrix without deleting from specimen I got the following exception:
~~~... - 10:52 PM Revision cab7b403 (cdmlib): fix NPE during specimen clone for matrix
- 10:51 PM Revision 3c2c69c6 (cdmlib): cleanup
- 09:06 PM Revision 42d15fca (cdmlib): add specimen to updateResult
- 09:01 PM Revision c04426d1 (taxeditor): ref #8785:update facts view after searching
- 08:58 PM Revision 5c9a95f8 (taxeditor): fix CCE in descriptive dataset editor
- 08:02 PM feature request #9089 (New): Show descriptive datasets in description details view
- Currently it is necessary to open the referencing objects view to know if a description is part of a descriptive data...
- 06:29 PM bug #9088 (Closed): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
~~~
last remote method : http://localhost:8080/remoting/name.service
last remote request client time : 2020-06-22...- 06:25 PM feature request #8134: Implement verbatim type information in dataportal
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > TextualTypeDesignation are not supposed to contain validly pu... - 05:04 PM feature request #8134: Implement verbatim type information in dataportal
- Andreas Kohlbecker wrote:
> TextualTypeDesignation are not supposed to contain validly published type designations, ... - 04:45 PM feature request #8134: Implement verbatim type information in dataportal
- TextualTypeDesignation are not supposed to contain validly published type designations, therefore it makes no sense t...
- 01:48 PM feature request #8134: Implement verbatim type information in dataportal
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The textual type designation are now at least shown in the ta... - 06:18 PM bug #9087 (Closed): typedesignation/{uuid}/annotations must return pager objects
- see commit:cdm-dataportal|45b496bc -> cdm_api.module which fixes the problem for #8134
Test page `reference_int/cd... - 06:13 PM Revision 45b496bc (cdmlib): ref #8134 fixing missing initialization of TaonNode.statusNode and source.citation
- 06:11 PM Revision a6c4c53c (cdm-dataportal): ref #8134 dealing with web service problems returning list instead of pagers and better placement of footnotes
- 06:09 PM Revision e26fd740 (cdmlib): ref #9078 adapt return type of service.parseName
- 05:30 PM Revision 60009dff (cdmlib): ref #9004 change source type to DescriptionElementSource for TaxonNode.source
- 04:55 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- The source can be edited via the taxon node wizard ("placement source") but only reference (and if a new node is crea...
- 01:15 PM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- display of status notes, source and annotations is implemented.
Is there any way to edit source and annotations ... - 04:24 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> Andreas Müller wrote:
> > There is also another strange behavior. When I do "reattache" the s... - 10:00 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- 03:43 PM Revision 1ce6e8ce (cdm-dataportal): ref #8134 trimming text
- 03:43 PM Revision 6325c7ad (cdm-dataportal): ref #8134 test for TextualTypeDesignation (requires new page class: NamePage)
- 03:09 PM Revision 4123dbbc (taxeditor): update facts view after searching
- 02:09 PM Revision 829d7f26 (cdm-dataportal): ref #8134 render_type_designations() cleaning code
- 02:07 PM Revision 79904336 (cdm-dataportal): ref #8134 moving render_type_designations() to include file
- 02:06 PM Revision 0c720425 (cdm-dataportal): ref #8134 refactoring theme to render function
- 01:13 PM Revision 95e00758 (cdm-dataportal): ref #9010 showing status notes, source and annotations
- 11:46 AM Revision d4db3c89 (taxeditor): ref #8785: adapt to changes in method signature of mergeDescriptions
- 11:45 AM Revision 4aa29834 (cdmlib): ref #8785: mergeDescriptions returns updateResult
06/21/2020
06/20/2020
- 11:00 AM Revision eeff4578 (taxeditor): ref #8785: fix saving of newly created descriptions for descriptive dataset
- 10:56 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Now add and delete should work. But if a specimen contains more than one description that could be used for cloning, ...
- 10:55 AM Revision 831a079e (cdmlib): ref #8785: fix saving of newly created descriptions for descriptive dataset
- 09:34 AM Revision 0020d108 (cdmlib): rf #9078 add parsing for existing names
- 09:33 AM Revision 8ce66ade (cdmlib): ref #9078 remove logging for deduplication
- 09:31 AM Revision d285f18d (cdmlib): ref #9085 improve X_OR_FIRST_NULL handling
- 09:23 AM bug #8959 (Closed): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Now it seems to work as expected
- 08:47 AM bug #9058 (Feedback): Hibernate loggs error when creating schema on MySQL due to failing index creation
- I copied the exception handling to a new ticket #9086.
I think the real issue of this ticket (exceptions are throw... - 08:45 AM feature request #9086 (New): Throw exception during schema generation if an exception occurrs
- copied from #9058
for a detailed description see there.
Different solutions exist by either finding a way to ru... - 08:37 AM bug #8857 (Closed): NonUniqueObjectException when creating new taxon
- That was because #9078 was set as blocker.
- 07:50 AM bug #8857: NonUniqueObjectException when creating new taxon
- I can't close the ticket because the closed status is not available
- 07:49 AM bug #8857: NonUniqueObjectException when creating new taxon
- tested it with a author and reference already in database and it works like expected.
- 08:35 AM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- this is done.
- 08:34 AM feature request #9085 (In Progress): Improve deduplication of parsed names
- 02:21 AM Revision c8f12e19 (taxeditor): cleanup
- 12:59 AM Revision 97a2bbb9 (taxeditor): ref #8754: adapt description for delete descriptions
- 12:57 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> So back to original issue of this ticket.
>
> The configurator now looks like
>
> ![]... - 12:44 AM Revision 1de7515f (taxeditor): ref #8785: smaller issues in character matrix - add and remove descriptions
06/19/2020
- 11:35 PM bug #8857 (Resolved): NonUniqueObjectException when creating new taxon
- With the changes for #9078 this is fixed now. Katja can you please again check and close the ticket if it works
- 11:26 PM Revision c078cfb8 (cdmlib): ref #9085 improvements to MatchStrategyFactory and switch order of match parameters, some improvements to TimePeriod matching
- 11:16 PM feature request #9085 (Closed): Improve deduplication of parsed names
- Special methods have been implemented during E+M import for improved deduplication (references+authors) of parsed nam...
- 09:39 PM Revision 8f2b3bc1 (cdmlib): ref #8785: reuse compatible description when adding specimen to character matrix
- 09:38 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> The main issue I originally wanted to test was how the deleting and adding of specimens in... - 06:24 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Did you save before you "reattache"?
Yes, sometimes I even did restart the TaxEditor. Almos... - 05:33 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Copied from #8754#note-22
>
> There is also another strange behavior. When I do "reattach... - 05:31 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Copied from #8754#note-22
There is also another strange behavior. When I do "reattache" the specimen to the matrix... - 05:05 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Upps sorry, I have overridden your changes accidentely. But maybe it is better to handle this in another ticket. What...
- 05:03 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Maybe we also need a configurator here for the removal of specimens(descriptions) from the matrix. Same issue as at #...
- 04:51 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- 10:37 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- I think all issues are fixed, please review.
- 10:37 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Now, when entering a value at "Specimen Filter" you sometimes get more values then when ente... - 10:35 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Katja Luther wrote:
> > The specimen list is loaded only the first time the dialog is opene... - 10:20 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Generally the layout should be improved. The "Taxon filter" and the "Specimen filter" look v... - 10:18 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> The layout the legend was corrupted by adding the new filter:
>
> 
... - 09:30 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> The specimen list is loaded only the first time the dialog is opened and added to a cache, the... - 09:25 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Generally the layout should be improved. The "Taxon filter" and the "Specimen filter" look very different at the mome...
- 09:24 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Now, when entering a value at "Specimen Filter" you sometimes get more values then when ente... - 09:20 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Now, when entering a value at "Specimen Filter" you sometimes get more values then when entering no value. This behav...
- 09:05 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- The new filter should be called "Taxonomic Group" filter or "Taxonomic Subtree" filter as it filters not only on 1 ta...
- 09:02 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- The layout the legend was corrupted by adding the new filter:
 - 08:58 AM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Now the nameCaches of the selected taxa are shown on top of the dialog, and a button for remov... - 09:32 PM Revision 205bdec4 (taxeditor): ref #9084: add config to delete description in character matrix
- 07:25 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
>
> This depends on the rank defined in the descriptive dataset. If you do not define a max ra... - 06:54 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> I watched another strange behavior about the selected taxon. I created a new DDS in rem_conf... - 06:51 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- I watched another strange behavior about the selected taxon. I created a new DDS in rem_conf_am and added the taxon n...
- 05:33 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- I moved #note-22 to #8785 as it belongs to this ticket (I added it accidentely here)
- 05:12 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- So back to original issue of this ticket.
The configurator now looks like
so the user... - 04:57 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> I could not test it, yet, but maybe this is a problem of synchronisation between the two edito... - 04:49 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> There is also another strange behavior. When I do "reattache" the specimen to the matrix the... - 04:40 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > now the configuration is available. plea... - 04:38 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- ~~There is also another strange behavior. When I do "reattache" the specimen to the matrix the old record seems to be...
- 04:14 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> Katja Luther wrote:
> > now the configuration is available. please review
>
> Something ... - 03:57 PM bug #8754 (Feedback): DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> now the configuration is available. please review
Something still is wrong here. What I did... - 05:05 PM feature request #9084 (In Progress): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- 05:03 PM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- copied from #8785, see also #8754#note-20
Maybe we also need a configurator here for the removal of specimens(desc... - 02:29 PM bug #8593 (Duplicate): Name editor: wrong context menu for synonyms
- this is the same problem as in #8959 because in the video demonstration the heterotypic synonym is moved to the homot...
- 02:19 PM Revision 079cd0bf (taxeditor): set location of login dialog to center of application
- 01:28 PM Revision 3617f84b (taxeditor): menu issues character matrix and descriptive dataset editor
- 11:50 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Katja Luther wrote:
> Applied in changeset commit:taxeditor|9d01ebe78d471b0203107cc8ebaac5ead4f1b2ee.
this should... - 11:35 AM bug #8959 (Resolved): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Applied in changeset commit:taxeditor|9d01ebe78d471b0203107cc8ebaac5ead4f1b2ee.
- 11:37 AM Revision 9d01ebe7 (taxeditor): fix #8959: fix correct focus after move syn
- 10:39 AM bug #9081 (Closed): Handle empty Partials correctly
- the code looks good and the tests work as expected, so we can close this ticket.
- 12:04 AM bug #9081: Handle empty Partials correctly
- should be fixed. Please review.
- 10:37 AM Revision 31bb0295 (taxeditor): ref #8785: layout issues
- 09:56 AM Revision 5f54eb62 (taxeditor): ref #8785: fix specimen selection for no filter and layout issue
- 09:53 AM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
- 08:38 AM bug #8849 (Closed): NPE in synonym DetailsViewer for synonyms without accepted taxon
- Andreas Müller wrote:
> Good points.
>
> I suggest to split the ticket. The NPE is fixed so this ticket can be cl... - 08:37 AM bug #9083 (New): Improve authorization handling in synonym details view (and generally)
- from #8849#note-7
Generally for permission checks the class CdmUserHelper should be used which provides a couple o... - 12:31 AM Revision 2953f2bf (cdmlib): fix failing test and cleanup
- 12:29 AM Revision 251dd204 (cdmlib): fix failing test and cleanup
- 12:21 AM Revision f7d4f55f (cdmlib): fix #9081 cleaning up tests using "00000000" (cont. 2)
- 12:19 AM Revision 60e7f76c (cdmlib): fix #9081 cleaning up tests using "00000000" (cont.)
- 12:08 AM task #9082 (In Progress): Update script for old empty Partials handling
- 12:08 AM task #9082 (Closed): Update script for old empty Partials handling
- Especially for Person.lifespan_end and Person.lifespan_start the problem existed. See #9081
~~~
UPDATE AgentBase ... - 12:02 AM Revision 359fd14e (cdmlib): cleanup
- 12:02 AM Revision 4c4faa00 (cdmlib): fix #9081 cleaning up tests using "00000000"
06/18/2020
- 11:54 PM bug #9081 (Resolved): Handle empty Partials correctly
- Applied in changeset commit:cdmlib|15f01b88c23a2d398aaa3dda81f0a6954a57da64.
- 06:12 PM bug #9081 (Closed): Handle empty Partials correctly
- Currently empty partials are stored as "00000000" in the database. This results in a situation where an hql query lik...
- 11:54 PM Revision 15f01b88 (cdmlib): fix #9081 fix handling of empty Partial during save and in Person.get/setLifespan
- 10:38 PM feature request #4298: refresh views after changing rights
- No it is the user him- or herself. So in this situation some windows might be open and functionality enabled which sh...
- 04:28 PM feature request #4298: refresh views after changing rights
- The description is not really clear.
Does the user itself changes his rights? Or the administrator? - 03:33 PM feature request #4298: refresh views after changing rights
- Andreas Kohlbecker wrote:
> I guess that this ticket has been erroneously assigned to me.
This ticket was created... - 02:05 PM feature request #4298: refresh views after changing rights
- I guess that this ticket has been erroneously assigned to me.
- 05:33 PM bug #8593: Name editor: wrong context menu for synonyms
- this is still an open issue
- 03:23 PM bug #8593 (Feedback): Name editor: wrong context menu for synonyms
- Can you check if this ticket is still open beside the remaining issue described in #8959 ?
I did not have this pr... - 05:14 PM bug #9058: Hibernate loggs error when creating schema on MySQL due to failing index creation
- > make it possible to activate holdOnError flag in SchemaExport to allow throwing Exceptions if problems occur during...
- 04:53 PM feature request #9078 (In Progress): Handle name parsing and deduplication on server side
- There is a problem with effectively deduplicating classes having a timePeriod attribute as empty Partials are sometim...
- 04:44 PM Revision 014ff426 (cdmlib): cleanup
- 04:43 PM Revision 0f9d8bd0 (taxeditor): cleanup
- 04:35 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- Thank you, I think we can close this ticket now.
- 04:04 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- I added the relevant tickets
- 02:02 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- please see the last comment
- 04:33 PM feature request #9034 (Closed): simple agent list page with filter function
- 04:32 PM Revision 77451b2a (cdm-dataportal): ref #9034 fixing uninitialized variable bugs and completing pager function
- 04:22 PM Revision 99fab853 (taxeditor): ref #8785: add remove filter button and title containing the selected taxa
- 04:20 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Generally this works.
> > >
> > > T... - 01:46 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > Generally this works.
> >
> > There is 1 open issue which is a b... - 01:26 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > ... however, the value was stored in the... - 12:00 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Generally this works.
>
> There is 1 open issue which is a bit critical: it is only possi... - 11:45 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > ... however, the value was stored in the DB, so maybe the error occ... - 08:55 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> ... however, the value was stored in the DB, so maybe the error occurred during save for AUD... - 08:53 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Kohlbecker wrote:
> "Das Label im Kontextmenü "Add Specimen Descriptions" ist zwar inhaltlich richtig aber "... - 04:10 PM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- 04:10 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The new field seems not to be used for... - 01:30 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Katja Luther wrote:
> Andreas Müller wrote:
> > The new field seems not to be used for entering values in the dialo... - 10:02 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Andreas Müller wrote:
> The new field seems not to be used for entering values in the dialogs for the descriptive ma... - 04:09 PM feature request #9080 (New): Use detailElement of quantitative data in dialog of character matrix
- see #9038#note-19 and #9038#note-20
- 04:05 PM feature request #3095 (New): protect taxa and nodes
- 03:58 PM feature request #8968: filter Bulk editor for created by
- createdBy AND updatedBy would be great!
- 03:56 PM feature request #8968: filter Bulk editor for created by
- As the sort function for columns already exists we only need to add the createdBy (and updatedBy?) column. This shoul...
- 03:53 PM feature request #8968: filter Bulk editor for created by
- A sort function would be fine for administering user's entries by the curator.
- 03:49 PM feature request #8968: filter Bulk editor for created by
- Needs discussion if this should be implemented for the search or for simply filtering the resulting table , see #8181...
- 03:44 PM feature request #8181: Further features for bulk editors
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > @Andreas: can you explain what you mean by MarkerType? Should... - 03:02 PM feature request #8181: Further features for bulk editors
- Andreas Müller wrote:
> @Andreas: can you explain what you mean by MarkerType? Should there be a concatenated list o... - 03:27 PM feature request #3683 (Closed): add /etc/default/cdmserver to debian package
- can be closed
- 03:25 PM bug #8682: cdm-server debian packages configured for jemalloc
- Andreas Kohlbecker wrote:
> can be closed if
>
> 1. there are no problems on the test or int server
> 2. all `LD... - 03:20 PM feature request #6878 (Closed): choose a base font for the portal and deliver it from the drupal module or theme
- works as expected
- 03:19 PM Revision 23c0bb1f (cdm-dataportal): ref #6878 using noto sans also for relationship symbols
- 01:59 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- I linked a tightly related issue: #8593
- 01:57 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Katja Luther wrote:
> Andreas K., can you also check if you can reproduce this?
Yes, this is reliably reproducibl... - 08:56 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Andreas K., can you also check if you can reproduce this?
- 01:31 PM feature request #3385: install enable and configure WYSIWYG editors be default
- attaching a test feature which has been created from http://edit.test/d7/phycobank/admin/structure/features/create
- 01:21 PM feature request #3385: install enable and configure WYSIWYG editors be default
- The [Features](https://www.drupal.org/project/features) apparently has all the functionality needed: "*Features focus...
- 12:18 PM Revision 607296e9 (taxeditor): ref #8785: add button to specimen sel dialog to remove filter
- 11:46 AM Revision 1d008f73 (cdmlib): ref #8785: fix sql exception by fixing nullSafeSet
- 09:16 AM feature request #9032 (Closed): Implement Feature.availableFor in TaxEditor
- Andreas Müller wrote:
> Looks much better now.
>
> I just wonder if it is not maybe better to handle Supports and... - 09:16 AM feature request #9079 (New): Move supported and available for parts of feature detail element to sections
- from #9032:
I just wonder if it is not maybe better to handle Supports and Available for also as Sections (they ha... - 09:02 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- now the configuration is available. please review
- 08:55 AM Revision 2d8bc492 (taxeditor): ref #8785: smaller label issues
- 08:55 AM Revision 40425911 (taxeditor): avoid widget is disposed exception when clicking on finish and open
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