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From 06/16/2020 to 07/15/2020

07/15/2020

10:30 PM Revision 2455d1e1 (taxeditor): cleanup
Andreas Müller
10:29 PM Revision 2f0d9de4 (taxeditor): fix compile error
Andreas Müller
10:21 PM Revision 20de2ce5 (cdmlib): ref #9071 add test for equal months to ExtendedTimePeriodFormatterTest
Andreas Müller
10:19 PM Revision 6a757427 (cdmlib): add empty factory method to TemporalData
Andreas Müller
10:19 PM Revision 086a1ba9 (cdmlib): DeleteNonReferencedReferencesUpdater uses ReferencingObjectsCount instead of ReferencingObjects
Andreas Müller
10:17 PM Revision bc75c3c7 (cdmlib): cleanup
Andreas Müller
08:33 PM Revision 81f1b374 (cdmlib): cleanup
Andreas Müller
08:32 PM Revision 767ce19d (cdmlib-apps): cleanup
Andreas Müller
07:40 PM feature request #9153: Handle additional information in image metadata
As the remaining issue is related to a ticket implemented by AK I pass this ticket to AK.
If the new parameter sti...
Andreas Müller
03:01 PM feature request #9153: Handle additional information in image metadata
... and existing image files need to be adapted. Andreas Müller
03:01 PM feature request #9153: Handle additional information in image metadata
Andreas Müller wrote:
> This should be implemented for imports and metadata reading.
For imports and metadata rea...
Andreas Müller
02:54 PM feature request #9153: Handle additional information in image metadata
RH:
Bei Bromus fasciculatus delilei (Fall bei Dir hinten unten) finde ich keine Lösung. Bei den Bildern gibt es au...
Andreas Müller
02:50 PM feature request #9153 (New): Handle additional information in image metadata
In rare cases the images on the image server as used for cyprus and cichorieae(?) include some more information addti... Andreas Müller
07:32 PM task #9155 (Closed): Update of used person names
Wolf-Henning Kusber
07:23 PM task #9155 (Closed): Update of used person names
Example: more than one author with family name "Zhang" was set to Abbrv. Title = "Zhang"
Zhang, W. was used for an a...
Wolf-Henning Kusber
07:31 PM task #9132 (Resolved): Update cyprus images to Scaler default API and add thumbnails
The above problems are all solved and discussed with Ralf so I guess we can close this ticket. Andreas Müller
07:29 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
I updated data in cyprus
~~~
UPDATE MediaRepresentationPart p
SET uri = Concat(uri, '&uvfix=1')
WHERE p.uri LIK...
Andreas Müller
04:30 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
The Universalviewer appends `?t={some-hash}` to the image URI. By this the links to the scaler api become invalid an... Andreas Kohlbecker
07:29 PM Revision 15d27f3d (cdmlib-apps): ref #9132 add uvfix parameter to Cyprus image import code
Andreas Müller
04:14 PM feature request #9154: Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional
AM:
wurde eingentlich mal diskutiert, ob man taxeditor.webapp nicht automatisch mit anbietet sondern als nachladba...
Andreas Müller
03:48 PM feature request #9154: Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional
Issue from #5752: Datasource view could be moved to taxeditor.webapp as it is only relevant together with it. (togeth... Andreas Müller
03:43 PM feature request #9154 (New): Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional
this is a follow up ticket for #5752
* remove and upgrade dependencies (mostly from taxeditor.cdmlib) (#9204)
* m...
Andreas Müller
03:46 PM feature request #5752 (Resolved): Reduce TaxEditor size
Many improvements have been done in this ticket. For further improvements a follow up ticket exists: #9154
Open is...
Andreas Müller
03:41 PM feature request #5752: Reduce TaxEditor size
cdmlib-remote-webapp is now removed from taxeditor.cdmlib which reduces the size of TaxEditor about 115 MB Andreas Müller
03:24 PM bug #8814: Clean implementation for permissions with combination of Taxonnode and other permissions
Assignee was missing for this ticket therefore it was moved to next milestone or closed in old milestone.
If this ...
Andreas Müller
03:03 PM feature request #9146: filter image metadata by include and exclude lists of key words
Please also have a look at #9153 when defining the default includes list Andreas Müller
02:32 PM feature request #9152 (Closed): PreferencesService caches CdmPreferences
implement as static private Map<String,String>
once the methods `public void set(CdmPreference preference)` or `pu...
Andreas Kohlbecker
02:28 PM feature request #8989: Implement flowering periods (temporal facts) in dataportal
As we do now already have data in production (uzbekistan) this should be implemented asap
e.g. http://portal.cybe...
Andreas Müller
02:21 PM bug #9126 (Closed): Import Flora of Uzbekistan phenology data
Andreas Müller
02:20 PM bug #9126 (Resolved): Import Flora of Uzbekistan phenology data
Applied in changeset commit:cdmlib|60451921a5902b944295844f9cb5156586971864. Andreas Müller
02:20 PM Revision f26883cb (cdmlib): cleanup
Andreas Müller
02:19 PM Revision 60451921 (cdmlib): fix #9126 implement phenology import
Andreas Müller
02:18 PM Revision 650e6222 (cdmlib-apps): ref 9126 UzbekistanPhenologyActivator added
Andreas Müller
02:17 PM Revision 7f47ea90 (cdmlib-apps): cleanup
Andreas Müller
02:06 PM Revision 92fdeae1 (cdmlib-apps): rename ImageInfo to CdmImageInfo and replace CdmUtils.str2uri
Andreas Müller

07/14/2020

09:23 PM bug #5710: Changing the database connection must reset all caches
Can you please test the results of the latest changes and see if the problem still exists by testing with data relate... Andreas Müller
09:17 PM task #9119 (Feedback): Remove schema create and schema update functionality from datsource view
The result looks fine. Only I wonder if we can also remove the the code that was called before to not have dead code.... Andreas Müller
09:14 PM feature request #9134: Rule based creation of additional media representations "on the fly"
There is one issue that needs to be solved:
* MediaToolbox.readTransformations is creating default preference valu...
Andreas Müller
09:12 PM feature request #9134 (Feedback): Rule based creation of additional media representations "on the fly"
As far as I can see this works well.
Some minor issues:
* The MediaToolbox methods change the media itself by a...
Andreas Müller
09:10 PM Revision 193bfc9a (cdmlib): ref #9134 fix transformation for non-square maxextend transformations
Andreas Müller
09:07 PM Revision 6e48a80a (cdmlib): cleanup
Andreas Müller
07:13 PM Revision ae5cf321 (cdmlib): cleanup
Andreas Müller
06:01 PM feature request #9146: filter image metadata by include and exclude lists of key words
I don't know if this is handled in this ticket or in another one. But the current implementation does not yet handle ... Andreas Müller
05:52 PM feature request #9146 (Feedback): filter image metadata by include and exclude lists of key words
Code looks fine and tests run so I guess it works, though no tests exist for "excludes".
I only have 2 architectur...
Andreas Müller
05:34 PM Revision 0b6d2193 (cdm-dataportal): typo and array initialization
Andreas Kohlbecker
05:12 PM bug #9151 (Closed): invalid pager information in /description/namedAreasInUse webservice

e.g.:
~~~json
http http://api.cybertaxonomy.org/euromed/description/namedAreasInUse includeAllParents==true pag...
Andreas Kohlbecker
04:48 PM feature request #9137: IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
I hope this is fixed now. Can you please review? Andreas Müller
04:40 PM bug #9143 (Feedback): Distribution data sources are missing if multiple distributions exist
Andreas Müller
04:40 PM bug #9143: Distribution data sources are missing if multiple distributions exist
The problem is already described in #4366. However, there it is handled as pure data aggregation (transmission engine... Andreas Müller
04:17 PM feature request #4366 (Duplicate): Transmissionengine Distribution: implement rules for source references
Close as duplicate for #8672 which is more general Andreas Müller
04:13 PM bug #4134 (Closed): Transmissionengine Distribution seems to miss distributions for higher Taxa
Andreas Müller
03:38 PM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties
Andreas Kohlbecker wrote:
> When writing tests to compare the performance of `+` with `StringBuilder` or `StringBuff...
Andreas Müller
03:22 PM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties
Interesting. I didn't know about the differences between StringBuilder and StringBuffer. I adapted the code according... Andreas Müller
03:20 PM bug #9147 (Resolved): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
Applied in changeset commit:cdmlib|63b2dbdb54bc105a8fa615e36eb754eeed6d3596. Andreas Müller
12:54 PM bug #9147 (Feedback): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
Andreas Müller wrote:
> I changed the method to use StringBuffer now.
>
> However, I tested the performance diff...
Andreas Kohlbecker
09:52 AM bug #9147: Use StringBuilder in CdmUtils.concat() to avoid performance penalties
I changed the method to use StringBuffer now.
However, I tested the performance difference and it is true that us...
Andreas Müller
09:46 AM bug #9147 (Resolved): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
Applied in changeset commit:cdmlib|8ab5e47c6a6ca132f2e495900c3bdfc7743d69c8. Andreas Müller
03:20 PM Revision 63b2dbdb (cdmlib): fix #9147 use StringBuilder instead of StringBuffer
Andreas Müller
03:19 PM Revision e0553f4a (cdmlib): cleanup
Andreas Müller
01:03 PM task #9150 (New): Test if the overriding of setTitleCache in Media class makes really sense
This has been implemented by NH 10 years ago. It might be a TaxEditor centric solution which results in unexpected ba... Andreas Müller
12:47 PM bug #9149: NPE when saving hybrid formula
This happens during merge on server side. The parent names do not have any data at some time when getTitleCache is ca... Andreas Müller
12:06 PM bug #9149 (Duplicate): NPE when saving hybrid formula
~~~
last remote method : http://localhost:65480/remoting/taxonnode.service
last remote request client time : 2020-0...
Andreas Müller
10:43 AM Revision 9d87f0e6 (cdmlib): cleanup
Andreas Müller
09:46 AM Revision 8ab5e47c (cdmlib): fix #9147 use StringBuffer in concat()
Andreas Müller

07/13/2020

09:02 PM feature request #9137 (Resolved): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
Applied in changeset commit:cdmlib|2e047df9e907f36f7179ebbda3a420adfa690c78. Andreas Müller
09:01 PM Revision 2e047df9 (cdmlib): fix #9137 IPTC keywords read by CdmImageInfo
Andreas Müller
08:43 PM task #9148 (Resolved): Replace sanselan library by the newer apache commons-imaging
Should be fixed, please review Andreas Müller
02:42 PM task #9148 (Closed): Replace sanselan library by the newer apache commons-imaging
commons-imaging is based on sanselan development so not much adaptation is needed. Andreas Müller
08:02 PM Revision 234333cc (taxeditor): ref #9148 add commons-imaging-1.0-alpha1 to TaxEditor dependencies and remove sanselan-0.97-incubator (cont. II)
Andreas Müller
06:38 PM Revision 4a943fb5 (taxeditor): cleanup
Andreas Müller
06:36 PM Revision 74cfb8fa (taxeditor): ref #9148 add commons-imaging-1.0-alpha1 to TaxEditor dependencies and remove sanselan-0.97-incubator (cont.)
Andreas Müller
06:12 PM feature request #9146 (Resolved): filter image metadata by include and exclude lists of key words
implemented with test Andreas Kohlbecker
12:59 PM feature request #9146 (Closed): filter image metadata by include and exclude lists of key words
Not all image metadata read from image files (stored in EXIF and ICPT data fields) it to be exposed to the public via... Andreas Kohlbecker
06:11 PM Revision 2eb4c6b4 (cdmlib): ref #9146 media metadata service method with cdm property based include and exclude filter definitions - test
Andreas Kohlbecker
06:06 PM Revision adb62052 (taxeditor): cleanup
Andreas Müller
06:06 PM Revision 0b4fe3ea (taxeditor): ref #9148 add commons-imaging-1.0-alpha1 to TaxEditor dependencies and remove sanselan-0.97-incubator
Andreas Müller
05:41 PM Revision 664c8b2a (taxeditor): ref #9148 rename ImageInfo to CdmImageInfo in TaxEditor
Andreas Müller
03:49 PM Revision 2a235907 (cdmlib-apps): cleanup
Andreas Müller
03:48 PM Revision e76ff5da (cdmlib-apps): ref #9145 final changes for IpniSourcesImport
Andreas Müller
03:43 PM Revision 16c69e07 (cdmlib): ref #9148 adapt MediaController and MediaServiceImpl to the new naming CdmImageInfo
Andreas Müller
03:43 PM Revision 9d43097c (cdmlib): ref #9148 change the name of CDM class ImageInfo to CdmImageInfo to avoid name calsh with commons-imaging/ImageInfo
Andreas Müller
03:34 PM Revision 1c0438e9 (cdmlib): ref #9146 typo
Andreas Kohlbecker
03:32 PM Revision 036b973d (cdmlib): ref #9146 media metadata service method with cdm property based include and exclude filter definitions
Andreas Kohlbecker
03:18 PM Revision a1257e7e (cdmlib): ref #9148 exchange sanselan by commons-imaging and adapt CDM ImageInfo
Andreas Müller
02:17 PM bug #9147 (Feedback): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
The semantics of String.join() and StringUtils.join() is different to the one of CdmUtils.concat() especially in term... Andreas Müller
02:03 PM bug #9147 (Closed): Use StringBuilder in CdmUtils.concat() to avoid performance penalties
Use `String.join()` or one of the `org.apache.commons.lang3.StringUtils.join(..)` methods instead. These methods are ... Andreas Kohlbecker
02:05 PM Revision 11c127bf (cdmlib): ref #9147 deprecating and commenting CdmUtils.concat()
Andreas Kohlbecker
01:12 PM Revision 551c4f43 (cdmlib): ref #9134 adding ducumentation for MediaUriTransformationProcessor and Mediatoolbox
Andreas Kohlbecker
12:36 PM Revision d0142787 (cdmlib): cleanup
Andreas Müller

07/11/2020

08:24 PM task #6606 (Closed): Import Bogota specimen data
This can be closed as the Bogota database will not be used anyway. Cleanup import data not necessary anymore. Andreas Müller
08:22 PM bug #9145 (Closed): Add sources to E+M IPNI distribution data
Andreas Müller
12:48 PM Revision 8e8e9251 (cdmlib): cleanup
Andreas Müller
12:18 PM Revision 482d17ed (cdmlib): cleanup
Andreas Müller
12:18 PM Revision 964efbfc (cdmlib): try to improve DefinedTermBase.clone() (cont. II)
Andreas Müller
12:03 PM Revision 63ed6f1b (cdmlib): try to improve DefinedTermBase.clone() (cont.)
Andreas Müller
10:52 AM bug #5710: Changing the database connection must reset all caches
This needs to be checked if this fully solves the problem Andreas Müller
10:52 AM bug #5710 (Resolved): Changing the database connection must reset all caches
There is a cache also in TermManager !!!
This is currently not emptied when connecting to a new datasource.
I a...
Andreas Müller
10:32 AM bug #5710: Changing the database connection must reset all caches
It looks like emptying the cache is done in CdmStoreConnector in this line
~~~
CdmStore.setInstance(applicationCo...
Andreas Müller
10:51 AM Revision 83d93c4c (cdmlib): cleanup
Andreas Müller
10:50 AM Revision 9d700cfc (taxeditor): ref #5710 add reset to TermManager after reconnect
Andreas Müller
10:49 AM Revision 16cafda4 (taxeditor): cleanup
Andreas Müller
09:40 AM Revision e6c92114 (cdmlib): try to improve DefinedTermBase.clone()
Andreas Müller
09:30 AM Revision dd06fef0 (taxeditor): remove @Component annotation from CdmServiceCacher
Andreas Müller
09:15 AM Revision 8e8c7741 (taxeditor): cleanup
Andreas Müller
08:57 AM Revision 321468f8 (taxeditor): remove springframework.context 3.2.2 from taxeditor.tests (cont.)
Andreas Müller
08:49 AM Revision f63b9760 (taxeditor): remove springframework.context 3.2.2 from taxeditor.test
Andreas Müller
01:15 AM Revision 55a5d551 (cdmlib-apps): ref #9145 add IpniSourcesImport for E+M IPNI data
Andreas Müller

07/10/2020

11:05 PM Revision 2ef06d1e (cdmlib): cleanup
Andreas Müller
10:35 PM Revision fa073bc8 (cdmlib): improve generics for list... and findTaxaByName
Andreas Müller
09:40 PM bug #9145 (Closed): Add sources to E+M IPNI distribution data
... imported by #8612 Andreas Müller
07:50 PM task #9144 (New): Enable org.eclipse.jetty.io.ConnectionStatistics jmx bean and collect request statistics with collectd
1. Enable org.eclipse.jetty.io.ConnectionStatistics jmx bean https://www.eclipse.org/jetty/documentation/current/stat... Andreas Kohlbecker
06:45 PM bug #9143: Distribution data sources are missing if multiple distributions exist
so, jetzt seh ich das ein bisschen genauer. Das Problem ist, dass es sich um aggregierte Daten handelt:
![](pictur...
Andreas Müller
05:35 PM bug #9143 (In Progress): Distribution data sources are missing if multiple distributions exist
AM:
also da sind in der DB auch keine Quellen dran, da kann im Portal auch nichts rauskommen.
Übrigens sehen di...
Andreas Kohlbecker
05:18 PM bug #9143 (Closed): Distribution data sources are missing if multiple distributions exist
Distribution data sources are missing if multiple distributions exist for the same area and the same status. This is ... Andreas Kohlbecker
04:48 PM feature request #9137: IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
RH:
ihr schraubt noch an der Darstellung der Metadaten. Allerdings weiß ich nicht, wie weit Details diskutiert wor...
Andreas Müller
10:54 AM feature request #9137 (Feedback): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
All image metadata (EXIF, IPTC, ...) is extracted by the cdmlib. The data portal only receives this data.
So the pr...
Andreas Kohlbecker
04:43 PM bug #9142 (Closed): The Agent search dialog shows duplicated entries
This happens in caryo_spp.
Things like this sometimes happen due multiple language representations of a term which...
Andreas Müller
04:29 PM Revision 0365ce03 (cdmlib-apps): ugrade version in cdmlib-app poms
Andreas Müller
04:12 PM task #9141 (New): setup IP connection rate limiting per IP address
The production server frequently is brought to its limit by clients sending as too many request per second
Solutio...
Andreas Kohlbecker
04:08 PM bug #9140 (Resolved): Deleting an image forgets moving operation
If I move an image in the taxon media view and then also delete an image and then save the movement is not stored but... Andreas Müller
04:02 PM feature request #9139 (New): When deleting a taxon with images the configuration should also handle the image
Currently the configuration is only about taxon and name attributes and there relations.
But often media are only ...
Andreas Müller
03:37 PM Revision 5cea7914 (cdmlib): ref #9138 add ignore docu to ignored test in BioCaseQueryServiceWrapperTest
Andreas Müller
03:37 PM Revision 9b778698 (cdmlib): cleanup
Andreas Müller
03:20 PM task #9138: Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId()
AM:
wie ... erwähnt, funktioniert bei uns gerade ein Biocase Test nicht, weil wohl ein Record nicht gefunden wird...
Andreas Müller
03:18 PM task #9138 (Closed): Reenable BioCaseQueryServiceWrapperTest.testQueryForUnitId()
The test has been set to ignore because 1 of the 2 specimen does not exist anymore in the original data.
So we nee...
Andreas Müller
11:45 AM bug #9000 (Closed): UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
no more problems Andreas Kohlbecker
11:33 AM bug #9000: UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
Yes this should be fixed by the attached changesets. Please review. Andreas Müller
10:46 AM bug #9000 (Resolved): UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
Hi Andreas, I guess this is solved already. Andreas Kohlbecker

07/09/2020

08:29 PM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
No, for TDWG areas the mapping is not stored in annotations but is hardcoded in the EditGeoServiceUtilities class. Se... Andreas Müller
08:12 PM feature request #9137 (Closed): IPTC Keywords (and maybe other information) is not shown in Universal Viewer yet
The UV reads and displays most the EXIF metadata of an image. However, to me is not clear if this is also the case fo... Andreas Müller
07:44 PM bug #9136 (New): Make Institution creatable where needed
In the rights section (supplemental data) it is possible to add an institution as rights owner (which makes sense as ... Andreas Müller
03:24 PM feature request #9134: Rule based creation of additional media representations "on the fly"
**TODO**: Skip the creation of a MediaRepresentation if a part with exactly the same URL already exists. Andreas Kohlbecker
11:28 AM feature request #9134: Rule based creation of additional media representations "on the fly"
please review Andreas Kohlbecker
11:20 AM feature request #9134: Rule based creation of additional media representations "on the fly"
A set of generic transformation rules for the BGBM digilib server rules will be stored in each db. This has been done... Andreas Kohlbecker
11:11 AM feature request #9134 (Resolved): Rule based creation of additional media representations "on the fly"
Applied in changeset commit:cdmlib|2a4ebda1f53750568311f67326e16fb4e3d7fa2a. Andreas Kohlbecker
11:38 AM feature request #9135 (New): All media related web service end points with MediaUriTransformation and/or bestMatchingRepresentation filter
At the time being, only some web service endpoints can filter media representation which meets requirements for size ... Andreas Kohlbecker
11:26 AM Revision 2f0cabf1 (cdmlib): fix #9134 solving merge conflict and avoiding field solving serialization in SearchReplace
Andreas Kohlbecker
11:11 AM Revision 2a4ebda1 (cdmlib): fix #9134 MediaUriTransformation for rule based creation of additional media representations 'on the fly'
Andreas Kohlbecker

07/08/2020

06:37 PM bug #9133: cdm_taxontree active taxon is focused after page reload
Andreas Kohlbecker wrote:
> 1. open http://flora-of-cyprus.eu/cdm_dataportal/taxon/e9925386-b197-4d81-a4fc-137ea96e6...
Andreas Müller
01:29 PM bug #9133 (New): cdm_taxontree active taxon is focused after page reload

1. open http://flora-of-cyprus.eu/cdm_dataportal/taxon/e9925386-b197-4d81-a4fc-137ea96e6b4f/images
2. reload the p...
Andreas Kohlbecker
06:26 PM Revision ebf4cc77 (taxeditor): update httpmime to 4.5.12
Andreas Müller
06:05 PM Revision 09522b16 (taxeditor): update to httpclient 4.5.12 (cont.)
Andreas Müller
05:57 PM Revision 3185cbdd (taxeditor): update to httpclient 4.5.12, commons-lang3 3.10 and commons-codec 1.14
Andreas Müller
05:29 PM feature request #9134 (Closed): Rule based creation of additional media representations "on the fly"
Often only the full sized image URIs are recorded in a db but thumbnail sized images are often required.
Based on...
Andreas Kohlbecker
05:07 PM Revision ce667d87 (cdmlib): update version for dependencies httpcomponents, commons-lang3, httpcore and commons-codec
Andreas Müller
04:59 PM task #9132 (In Progress): Update cyprus images to Scaler default API and add thumbnails
~~~ sql
SELECT Replace(Replace(uri, 'https://pictures.bgbm.org/digilib/Scaler/IIIF/Cyprus!', ''), '/full/full/0/defa...
Andreas Müller
04:59 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
AM:
noch ein „kleiner“ Nachtrag. Es gibt im CDM inzwischen >100 „Bilder“, die in als Datei nicht mehr existieren. ...
Andreas Müller
11:52 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
Taxon not found: Ophrys kotschyi-sphegodes
Andreas Müller
11:30 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
Problem (Could not read block (block start: 14468, block length: 15217440, data length: 65527).) when reading metadat... Andreas Müller
11:23 AM task #9132: Update cyprus images to Scaler default API and add thumbnails
Keyword has not correct format and can not be parsed: showing abscission zone for file Bromus_fasciculatus_s_delilei... Andreas Müller
12:22 PM Revision dd789975 (taxeditor): Revert "remove mysql-connector-java from taxeditor-cdmlib" and use latest mysql-connector version instead
This reverts commit 439eb660e3682cbdd4dafbeed7dd81ef52e6f326. Andreas Müller
09:56 AM Revision 40d1f836 (cdmlib-apps): ref #9132 Cyprus images updated for IIIF and Scaler API
Andreas Müller
09:53 AM Revision e7c688e7 (cdmlib-apps): cleanup
Andreas Müller
09:25 AM Revision 6583c830 (cdmlib): preliminary ignore BioCaseQueryServiceWrapperTest
Andreas Müller
09:24 AM Revision 89dad6a3 (cdmlib): cleanup
Andreas Müller
09:18 AM Revision 684783aa (cdmlib): ref #9132 improve length reading for URI based images
Andreas Müller

07/07/2020

08:35 PM task #9132 (In Progress): Update cyprus images to Scaler default API and add thumbnails
Currently only 1 representation exists (for the full image) using the Scaler IIF API with links like:
https://pict...
Andreas Müller
05:05 PM feature request #9131 (Worksforme): Show annotations for teams and persons in PhycoBank portal
Henning:
Bei einigen Autoren habe ich bereits „Editorial“ Annotations, die noch nicht angezeigt werden (Beispiel...
Andreas Kohlbecker
03:47 PM Revision d35a91f7 (cdmlib): Revert "Revert "cleanup" and "fix #9129 add AdditionalMediaCopyright preference predicate""
This reverts commit c209fbc15a181c5be945a00cef29768f468ad12b. Andreas Müller
03:25 PM Revision c209fbc1 (cdmlib): Revert "cleanup" and "fix #9129 add AdditionalMediaCopyright preference predicate"
This reverts commit eaf633c931f45f5c95f1656bce0afe7c4c84dc56 and 600a12c7c81c43398ef8ee3e9aaca7d44b2f709e Andreas Müller
03:16 PM Revision 880b8403 (cdm-dataportal): Merge tag '5.16.1' into develop
tagging hotfix 5.16.1 Andreas Kohlbecker
03:16 PM Revision 4abc915f (cdm-dataportal): Merge branch 'hotfix/5.16.1'
Andreas Kohlbecker
03:16 PM Revision b32e80cd (cdm-dataportal): fix #9128 setting for additional copyright statement and display below the universalviewer
Andreas Kohlbecker
03:01 PM feature request #9128 (Resolved): Default copyright statement below image viewer
Applied in changeset commit:cdm-dataportal|3025e3fad159d10338ee136f4b84abe1045230f5. Andreas Kohlbecker
01:35 PM feature request #9128 (Closed): Default copyright statement below image viewer
For portals using the FSI viewer it was possible to store a default copyright statement in the FSI Server which has b... Andreas Kohlbecker
03:01 PM Revision 3025e3fa (cdm-dataportal): fix #9128 setting for additional copyright statement and display below the universalviewer
Andreas Kohlbecker
02:34 PM task #9129: cdm property to store a default copyright statement for media items
Please review Andreas Müller
02:27 PM task #9129 (Resolved): cdm property to store a default copyright statement for media items
Applied in changeset commit:cdmlib|600a12c7c81c43398ef8ee3e9aaca7d44b2f709e. Andreas Müller
02:15 PM task #9129: cdm property to store a default copyright statement for media items
I think defaultMediaCopyright(Statement) is better as there are also many other possible types of copyright e.g. on t... Andreas Müller
01:37 PM task #9129 (Closed): cdm property to store a default copyright statement for media items
Suggested property names:
* `defaultCopyright`
* `defaultMediaCopyrightStatement`
Andreas Kohlbecker
02:26 PM Revision 600a12c7 (cdmlib): fix #9129 add AdditionalMediaCopyright preference predicate
Andreas Müller
02:25 PM Revision eaf633c9 (cdmlib): cleanup
Andreas Müller
01:41 PM task #9130 (New): add default copyright statment to IIIF manifest as attribution to the sequence

A. Prepend to the existing text in `sequence.attribution = ""`
or
B. replace the `sequence.attribution`compl...
Andreas Kohlbecker
08:30 AM Revision 0e23e026 (cdmlib): cleanup
Andreas Müller

07/06/2020

03:58 PM task #9125 (Closed): Import Flora of Uzbekistan taxon descriptions
Andreas Müller
12:40 PM task #9125 (Closed): Import Flora of Uzbekistan taxon descriptions
Andreas Müller
03:53 PM Revision 593defdd (cdmlib-apps): ref #9041, ref #9049, ref #8996 add create report to Fl. Uzbekistan imports
Andreas Müller
03:52 PM Revision 156f2413 (cdmlib-apps): ref #9125 add UzbekistanDescriptionsActivator
Andreas Müller
03:14 PM Revision 36dd4544 (cdmlib): ref #9025 implement TextDataExcelImport
Andreas Müller
03:13 PM Revision beab7c7b (cdmlib): cleanup
Andreas Müller
12:58 PM Revision 45b0aa5d (cdmlib): cleanup
Andreas Müller
12:58 PM Revision 0109b340 (cdmlib): ref #9049 final changes to Fl. Uzbekistan habitat import (and change column label langauge to default)
Andreas Müller
12:46 PM task #9127 (New): Import Flora of Uzbekistan specimen data
type specimen and other specimen Andreas Müller
12:44 PM bug #9126 (Closed): Import Flora of Uzbekistan phenology data
Andreas Müller
12:39 PM bug #9049 (Closed): Import Flora of Uzbekistan taxa habitats
Andreas Müller
10:43 AM bug #9049 (In Progress): Import Flora of Uzbekistan taxa habitats
Andreas Müller
10:42 AM Revision 965ce443 (cdmlib-apps): ref #9049 add Fl. Uzbekistan habitat import activator
Andreas Müller
10:39 AM task #9041 (Closed): Import Flora of Uzbekistan taxa altitudes
Andreas Müller
10:37 AM task #9041 (Resolved): Import Flora of Uzbekistan taxa altitudes
Applied in changeset commit:cdmlib|49db4e78808aa6e0753412020e0e27895af12626. Andreas Müller
10:38 AM Revision 8725320d (cdmlib-apps): ref #9041 adapt UzbekistanAltitudeActivator to correct handling for H2
Andreas Müller
10:36 AM Revision 7b58ff14 (cdmlib): ref #9049 first implementation for Fl. Uzbekistan habitat import
Andreas Müller
10:35 AM Revision fd88fb6a (cdmlib): fix #9041 final changes to AltitudeExcelImport
Andreas Müller
10:30 AM Revision 5cf1f8e1 (cdmlib): ref #9061 some further steps for an import analyze framework
Andreas Müller
10:27 AM Revision 49db4e78 (cdmlib): fix #9041 final changes to AltitudeExcelImport
Andreas Müller
10:26 AM Revision 2eb8c59a (cdmlib): cleanup
Andreas Müller

07/04/2020

06:33 PM bug #9124 (Closed): Altitude feature should have [m] as measurement unit by default
This requires that measurement units are loaded before.
Update script needed
Andreas Müller
05:28 PM Revision 525e9751 (cdmlib): fix TimePeriodParserTest for UTF-8
Andreas Müller
05:21 PM Revision 0c0a92d1 (cdmlib-apps): Minor change to GreeceImageActivator
Andreas Müller
05:00 PM Revision fe2939a3 (taxeditor): remove space arround nameInSource in fact label
Andreas Müller
03:17 PM Revision 1da03adc (cdmlib): ref 5752 Revert "update H2 to v1.4.200"
This reverts commit b23d992e2b6dda7180fd15339dc565c6038bd347. Andreas Müller
02:54 PM feature request #8978 (Closed): Implement measurement values as BigDecimal
moved algorithm testing to new ticekt: #9123
Open TaxEditor ticket for matrix editing moved to: #9080
Andreas Müller
02:52 PM task #9123 (Closed): Fix BigDecimal algebra in aggregation algorithms
see #8978 for details Andreas Müller
02:40 PM Revision b23d992e (cdmlib): update H2 to v1.4.200
Andreas Müller
02:39 PM Revision 4e0067c2 (cdmlib): cleanup
Andreas Müller

07/03/2020

04:18 PM bug #8310 (In Progress): Issues to solve in E+M shapefile
Andreas Kohlbecker
04:15 PM feature request #2489 (Resolved): strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
Andreas Kohlbecker
04:09 PM feature request #2489: strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
to review:
1. wait until the shapefile is available in the geoserver
2. test manually if the order of polygons w...
Andreas Kohlbecker
04:08 PM feature request #2489: strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
the merged shapefile has been created an is available at https://github.com/cybertaxonomy/tdwg-area-shapefiles
Andreas Kohlbecker
04:14 PM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
I passed this issue to you since I am assuming that the mapping is defined per default for the terms.
I this is no...
Andreas Kohlbecker
04:13 PM feature request #9122 (Feedback): update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
The csv export of the attribute tables is found at https://github.com/cybertaxonomy/tdwg-area-shapefiles/blob/master/... Andreas Kohlbecker
09:12 AM feature request #9071: Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
This should be fixed now. Please review. Andreas Müller
09:11 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
Applied in changeset commit:cdmlib|2327c7599e20695ff913cf4289a70e0788ef9599. Andreas Müller
09:11 AM Revision 7b6bcfa7 (cdmlib): fix UTF8 in TimePeriodParserTest
Andreas Müller
09:11 AM Revision 2327c759 (cdmlib): fix #9071 fix incorrect formatting for empty but not null partials
Andreas Müller
08:52 AM feature request #9101 (Closed): Add feature "Fruiting Period"
Missing abbreviation is handled in #9121 Andreas Müller
08:51 AM feature request #9121 (Closed): Add abbreviations to Feature
Currently the term loading for features does not allow abbreviations.
But these are needed e.g. for Flowering peri...
Andreas Müller
08:43 AM feature request #8991 (Closed): Add feature "Flowering Period"
Update script ticket for missing supportsTemporalData on test systems created: #9120 Andreas Müller
08:42 AM task #9120 (Closed): Update script for flowering period supports temporal data
according to #8991#note-5 some flowering periods on test systems do not yet have the supportsTemporalData flag set. T... Andreas Müller
08:38 AM bug #9115 (Closed): NPE in reference bulk editor
Andreas Müller
12:29 AM Revision 13a0c855 (taxeditor): cleanup
Andreas Müller
12:29 AM Revision e5a23c6b (taxeditor): ref #5752 remove xom and springfox-swagger-common-2.3.1 and springfox-swagger2-2.3.1
Andreas Müller
12:05 AM Revision 7536e2e2 (taxeditor): ref #5752 remove hibernate-cglib-repack-2.1_3, hibernate-ehcache-5.0.7.Final
Andreas Müller
12:04 AM Revision b31e1c21 (taxeditor): ref #5752 remove dozer-5.3.0
Andreas Müller

07/02/2020

11:55 PM Revision bd41d7a4 (taxeditor): ref #5752 remove spring-security-oauth2 including jackson-mapper-asl and jackson-core-asl
Andreas Müller
11:45 PM Revision ab49c2fa (taxeditor): ref #5752 remove spring-security-web
Andreas Müller
11:36 PM Revision e7ffaed2 (taxeditor): ref #5752 remove spring-modules-cache and dependeny concurrent-1.3.4
Andreas Müller
11:29 PM Revision 6fa33238 (taxeditor): ref #5752 remove javax.servlet-api and spring-webmvc
Andreas Müller
03:53 PM Revision 333c6d77 (taxeditor): improve ping test
Andreas Müller
03:42 PM Revision 6ab24623 (taxeditor): add logging for server ping tests
Andreas Müller
03:26 PM Revision f24afdfe (taxeditor): cleanup
Andreas Müller
03:15 PM Revision 773143f9 (taxeditor): ref #5752 use taxeditor.webapp cdmlib-remote-webapp.war for taxeditor tests
Andreas Müller
02:53 PM Revision e6ec6b67 (taxeditor): reorder the included artifactIds
Andreas Müller
01:44 PM Revision 67e82e6c (taxeditor): remove redundant version for antrun-plugin
Andreas Müller
01:40 PM Revision e2f6663b (taxeditor): ref #5752 add h2-1.4.200 to taxeditor.test
Andreas Müller
01:20 PM Revision c38b8384 (taxeditor): ref #5752 remove easymock-2.3, easymockclassextension-2.3, h2-1.4.190, h2mig_pagestore_addon, hsqldb-2.3.3, junit-benchmarks-0.7.2, ognl-2.6.9, yip-controller-api-redist from taxeditor.cdmlib
Andreas Müller
01:17 PM bug #8310: Issues to solve in E+M shapefile
shapefiles can be downloaded from http://download.geofabrik.de/europe.html Andreas Kohlbecker
12:45 PM Revision ae1769f4 (taxeditor): ref #5752 remove cdmlib-remote-webapp.war from taxeditor.cdmlib (cont.)
Andreas Müller
12:01 PM Revision 096d7d2f (taxeditor): ref #5752 remove cdmlib-remote-webapp.war from taxeditor.cdmlib (cont.)
Andreas Müller
11:58 AM bug #9099 (Resolved): placemark icon in kml map not clickable
Applied in changeset commit:cdm-dataportal|720f43681d5eefdc33bd09644d7a0f2efd58c622. Andreas Kohlbecker
11:58 AM Revision 720f4368 (cdm-dataportal): fix #9099 disabling click events for error radius svg paths
Andreas Kohlbecker
11:36 AM Revision 93381d65 (taxeditor): ref #5752 remove cdmlib-remote-webapp.war from taxeditor.cdmlib
Andreas Müller
10:49 AM Revision faf4235f (taxeditor): ref #9119: remove update and create datasource from datasource view context menu
Katja Luther
10:47 AM task #9119 (Resolved): Remove schema create and schema update functionality from datsource view
please review Katja Luther
10:25 AM task #9119 (Closed): Remove schema create and schema update functionality from datsource view
As now schema creation and schema update can be done via taxeditor-webapp (#9025), too, we do not need it anymore the... Andreas Müller
09:50 AM feature request #9118 (Resolved): Change p2 update site to https in Taxeditor
I think we can test this with the nightly builds Andreas Müller
09:45 AM feature request #9118 (Closed): Change p2 update site to https in Taxeditor
Andreas Müller
09:46 AM Revision 81efea27 (taxeditor): ref #9118 change link to update site to https
Andreas Müller
09:21 AM Revision 5cd207e3 (taxeditor): update mysql-connector to 8.0.20 in taxeditor-webapp
Andreas Müller
09:00 AM feature request #9009 (Closed): Add structure to store media metadata
The type level java doc regarding auditing was not up to date. I changed this and the ticket can be closed. Andreas Kohlbecker
09:00 AM Revision 439eb660 (taxeditor): remove mysql-connector-java from taxeditor-cdmlib
Andreas Müller
08:59 AM Revision e59aa8bb (cdmlib): ref #9009 updating class doc regarding auditing
Andreas Kohlbecker
08:56 AM Revision fc99c3a2 (cdmlib): upgrade mysql-connector to 8.0.20
Andreas Müller
08:44 AM feature request #8134 (Closed): Implement verbatim type information in dataportal
Andreas Kohlbecker wrote:
>
> So there is one last bit to do here:
>
> * show textual type information in regis...
Andreas Kohlbecker
08:43 AM feature request #9117 (New): show textual type information in registration page
last remaining task copied from #8134 Andreas Kohlbecker
08:39 AM feature request #9010 (Closed): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
Andreas Müller wrote:
> Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded ...
Andreas Kohlbecker
08:38 AM bug #9058 (Closed): Hibernate loggs error when creating schema on MySQL due to failing index creation
yes in deed! Andreas Kohlbecker
08:37 AM bug #8682 (Closed): cdm-server debian packages configured for jemalloc
`LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libjemalloc.so.1` removed from all servers
Andreas Kohlbecker

07/01/2020

11:00 PM Revision 1fd65fb3 (taxeditor): remove xstream and dependencies xpp3(_min) and xmlpull from taxeditor.cdmlib plugin
Andreas Müller
10:54 PM Revision 89930bbc (cdmlib): cleanup
Andreas Müller
10:54 PM Revision c47aa823 (cdmlib): Upgrade xstream from 1.4.7 to 1.4.12
Andreas Müller
10:51 PM Revision e056c52c (cdmlib): remove commented db dependencies from remote pom
Andreas Müller
03:06 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
Note2: In the TaxEditor most elements implementing such single source refer to ReferencedEntityBase/IReferencedEntity... Andreas Müller
02:58 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
Note: At the moment nomenclatural reference is not really a source yet but nom ref and nom source exist in parallel. ... Andreas Müller
01:05 PM feature request #9116 (Closed): Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
e.g TaxonName.nomenclaturalSource and TaxonName.source. For a complete list of all such places see #6581
Nomenclat...
Katja Luther
01:21 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Müller wrote:
> Katja Luther wrote:
> > For terms we have to have a deeper look because inspecting the vola...
Katja Luther
12:16 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Katja Luther wrote:
> For terms we have to have a deeper look because inspecting the volatileCache shows a lot of te...
Andreas Müller
12:15 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Katja Luther wrote:
> Another thing I recognized, when entering a nomenclatural reference in the freetext editor for...
Andreas Müller
11:57 AM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Katja Luther
11:57 AM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
For terms we have to have a deeper look because inspecting the volatileCache shows a lot of terms of type UNKNOWN.
...
Katja Luther
09:31 AM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> > > Please decide who wants to revie...
Andreas Kohlbecker
11:15 AM feature request #9071 (Feedback): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
Katja Luther
11:12 AM feature request #9071: Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
when deleting the end year (and no month and day was entered) a second "-" respectively a m-dash appears in the forma... Katja Luther
09:53 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
Katja Luther
09:47 AM feature request #9071 (Feedback): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
Katja Luther

06/30/2020

10:15 PM bug #9115 (Resolved): NPE in reference bulk editor
please review Katja Luther
10:14 PM bug #9115 (Closed): NPE in reference bulk editor
Hallo
im Bulk Editor – ich habe eine Ref. gelöscht, anschl. nicht gespeichert, die nächste gelöscht (nach OK für Spe...
Katja Luther
05:53 PM Revision f719c88c (cdm-server): Merge branch 'release/5.16.0' into develop
jenkins
05:53 PM Revision 7327ff50 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
05:52 PM Revision af1eb1a9 (cdm-server): updating poms for branch'release/5.16.0' with non-snapshot versions
jenkins
05:51 PM Revision c522a018 (cdm-webapp): Merge branch 'release/5.16.0' into develop
jenkins
05:51 PM Revision e0723049 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
05:51 PM Revision 55c17fa5 (cdm-webapp): updating poms for branch'release/5.16.0' with non-snapshot versions
jenkins
05:50 PM Revision 98334074 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.16.0
jenkins
05:26 PM Revision 2676eff5 (cdm-vaadin): Merge branch 'release/5.16.0' into develop
jenkins
05:26 PM Revision 4fa5b615 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
05:25 PM Revision 86f053e0 (cdmlib): use UTF8 for separator in 2 tests
Andreas Müller
05:22 PM Revision 8f5a007c (taxeditor): Merge branch 'release/5.16.0' into develop
jenkins
05:22 PM Revision ddfc908b (taxeditor): Merge branch 'release/5.16.0'
jenkins
05:22 PM Revision a519a001 (cdm-vaadin): updating poms for branch'release/5.16.0' with non-snapshot versions
jenkins
05:22 PM Revision 09aa2c7d (cdm-vaadin): jenkins bumping cdmlib.version to 5.16.0
jenkins
05:22 PM Revision d74de2e7 (cdm-dataportal): Merge branch 'release/5.16.0' into develop
jenkins
05:22 PM Revision eec0f287 (cdm-dataportal): updating poms for branch'release/5.16.0' with non-snapshot versions
jenkins
05:21 PM Revision 824de571 (cdm-dataportal): release-preparation: production level css
jenkins
05:21 PM Revision a2784753 (cdmlib): Updating develop poms back to pre merge state
jenkins
05:21 PM Revision 70091156 (cdmlib): Merge branch 'master' into develop
jenkins
05:21 PM Revision c0d6a0f1 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
05:21 PM Revision dc304ee0 (cdmlib): Merge branch 'release/5.16.0'
jenkins
05:06 PM feature request #6429 (Worksforme): Reconstruct Admin Preferences
yes this is implemented a long time ago. Katja Luther
04:05 PM feature request #6429: Reconstruct Admin Preferences
Can you check this? Andreas Müller
04:57 PM Revision 62e21dc4 (cdmlib): updating poms for branch'release/5.16.0' with non-snapshot versions
jenkins
04:53 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Please decide who wants to review this ticket.
> >
> > By ...
Andreas Müller
04:26 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Müller wrote:
> Please decide who wants to review this ticket.
>
> By the way: I adapted the session insp...
Andreas Kohlbecker
03:14 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Please decide who wants to review this ticket.
By the way: I adapted the session inspection dialog in TaxEditor in...
Andreas Müller
03:11 PM bug #7709 (Resolved): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
This should be fixed now. The transient entity cacher handles now both transient and volatile objects via the same UI... Andreas Müller
04:44 PM Revision bf6a153d (cdm-dataportal): updating poms for 5.17.0-SNAPSHOT development
jenkins
04:43 PM Revision 3354ffdb (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.16.0-SNAPSHOT
jenkins
04:43 PM Revision 9c3bb185 (cdm-webapp): updating poms for 5.17.0-SNAPSHOT development
jenkins
04:43 PM Revision 549fa784 (cdm-webapp): updating poms for 5.16.0 branch with snapshot versions
jenkins
04:42 PM Revision 72018033 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.17.0-SNAPSHOT
jenkins
04:41 PM Revision ace1ec64 (taxeditor): Updated version in pom / project files to taxeditor version : 5.17.0-SNAPSHOT and cdmlib version : 5.17.0-SNAPSHOT
jenkins
04:40 PM Revision dd650a1e (taxeditor): Updated version in pom / project files to taxeditor version : 5.16.0 and cdmlib version : 5.16.0
jenkins
04:40 PM Revision 2b84f0ee (cdm-vaadin): jenkins bumping cdmlib.version to 5.16.0-SNAPSHOT
jenkins
04:40 PM Revision 0d1207fe (cdm-vaadin): updating poms for 5.17.0-SNAPSHOT development
jenkins
04:40 PM Revision 5f3270f9 (cdm-vaadin): updating poms for 5.16.0 branch with snapshot versions
jenkins
04:40 PM Revision 4b51b4a2 (cdm-vaadin): jenkins bumping cdmlib.version to 5.17.0-SNAPSHOT
jenkins
04:40 PM Revision 531d176e (cdm-server): updating poms for 5.17.0-SNAPSHOT development
jenkins
04:36 PM Revision 3903c1b1 (cdmlib): updating poms for 5.17.0-SNAPSHOT development
jenkins
04:25 PM feature request #9111 (Closed): Handle Malformed URIs
This works well. I created a new ticket for moving the code to cdmlib: #9114 Andreas Müller
03:42 PM feature request #9111 (Resolved): Handle Malformed URIs
please review. Katja Luther
03:41 PM feature request #9111: Handle Malformed URIs
We already have the UrlUtf8Coder in cdmlib.commons Katja Luther
03:40 PM feature request #9111: Handle Malformed URIs
suggestion of AK:
ich halte es schon für richtig, generell URIs zu verwenden, sollten aber nicht erlaubte Zeichen ...
Katja Luther
03:39 PM feature request #9111 (Rejected): Handle Malformed URIs
mail WB:
ich habe hier wieder so eine URL die ich nicht als URI abspeichern kann:
https://bioone.org/journals/Cac...
Katja Luther
04:23 PM feature request #9114 (Closed): Handle malformed URIs in user type
The fix for #9111 should be moved to a new URI user type wrapper that is used instead of the current URI class. Other... Andreas Müller
04:19 PM bug #9112 (Closed): Widget is disposed when closing factual data view
Don't know if this is easy to reproduce. But I did not get an exception when closing the facts view. Andreas Müller
03:46 PM bug #9112 (Resolved): Widget is disposed when closing factual data view
please review or close the ticket. Katja Luther
03:45 PM bug #9112 (Closed): Widget is disposed when closing factual data view
mail WB:
Hallo, nach dem Schließen des Fact-views nach Eingabe einer Citation beim Speichern des Taxons. Der neue ...
Katja Luther
04:18 PM bug #6276 (Closed): Nomenclatural references show parsed date string instead of publication year
from what I've seen during the last days, this seems to be solved completely. Andreas Kohlbecker
04:18 PM bug #9113 (Closed): NPE when deleting classification
This is fixed. Andreas Müller
03:50 PM bug #9113 (Resolved): NPE when deleting classification
please review Katja Luther
03:48 PM bug #9113 (Closed): NPE when deleting classification
mail AM:
Hallo,
Beim Löschen einer Classification habe ich den Fehler unten bekommen. Im Code unten wurde wohl ...
Katja Luther
04:14 PM feature request #8585 (Closed): Factual Data View: new DesctiptionElements shoud be selected immediately
This works very well know. Nice new workflow improvement. Andreas Müller
04:11 PM bug #9097 (Closed): specimen coordinate links in maps to geohack service broken
works as expected Andreas Kohlbecker
04:04 PM bug #9102 (Closed): taxonNode status icon breaks sort order in taxontree
Andreas Kohlbecker
04:01 PM bug #9095 (Closed): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
Andreas Kohlbecker
03:46 PM bug #9095 (Resolved): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
Andreas Kohlbecker
12:25 PM bug #9095 (In Progress): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
the last commit:a8905b5d also causes Problems since `TeamAutoInitializer` needs to distinguish Team and Person to avo... Andreas Kohlbecker
03:37 PM Revision b6bea419 (cdmlib): ref #9095 improving AdvancedBeanInitializer performance by using Optional instead of Exceptions
Andreas Kohlbecker
03:36 PM feature request #9078 (Closed): Handle name parsing and deduplication on server side
Tested:
Authors, the author is correctly deduplicated for persons with same abbrevTitle, also if the already exist...
Katja Luther
03:02 PM feature request #9078: Handle name parsing and deduplication on server side
This should work now. Can you please review. Andreas Müller
03:28 PM bug #5710 (In Progress): Changing the database connection must reset all caches
Andreas Müller
03:11 PM Revision d2a8e3bf (cdmlib): ref #9095 falling back to explicite bean property intialization for TeamOrPersonBase
Andreas Kohlbecker
02:59 PM Revision cc71e44c (taxeditor): encode invalid character in URI
Katja Luther
02:54 PM Revision ee500fb8 (taxeditor): ref #9078 fix caching for deduplicated name in ParseHandler
Andreas Müller
02:53 PM Revision 8a286db5 (taxeditor): Exclude ignored entities from session expection
Andreas Müller
02:50 PM Revision 3a6a6dab (taxeditor): cleanup
Andreas Müller
02:49 PM Revision 3fbb8717 (taxeditor): Adapt ICdmEntitySession to new includeIgnored parameter
Andreas Müller
02:45 PM Revision 8e692c4e (cdm-vaadin): adapt EntityCacheDebuggerComponent to new includeIgnored parameter
Andreas Müller
02:40 PM Revision 86d726ac (cdmlib): add includeIgnore parameter to EntityCacherDebugResult and minor refactoring
Andreas Müller
02:40 PM Revision be3c44be (cdmlib): cleanup and improve logging in EntityCacherDebugResult
Andreas Müller
02:31 PM Revision b8404854 (cdmlib): improve logging in CacheLoader
Andreas Müller
01:12 PM feature request #9110 (Feedback): Add additional informations to metadata table of cdmLight
For the usage of cdmLight in GfBio we need some more information in the metaData table:
* creationDate
* Base URL...
Katja Luther
12:05 PM bug #9109 (Closed): Search button font icon broken
![](picture229-1.png)
even if https://www.phycobank.org/sites/phycobank/modules/cdm_dataportal/fonts/fontawesome-f...
Andreas Kohlbecker
11:33 AM bug #8167 (Resolved): Permission denied for Submitter when adding section to newly created journal
bitte testen Andreas Kohlbecker
11:16 AM EDIT Platform Etablierung task #9108 (Closed): Prepare Kurs Borsch
Voraussichtlich soll der Kurs von Thomas Borsch wieder stattfinden.
Rechtzeitige Vorbereitung ist wichtig.
**Astr...
Andreas Kohlbecker
11:09 AM task #9106 (New): Quick person entry via identifier (ORCID, IPNI, ...) for phycobank
The data entry for persons could be simplified by a mechanism which fetches the details from an authority after entry... Andreas Kohlbecker
10:41 AM task #9105 (Closed): rename NodeSortMode etc to TaxonNodeSortMode
die Enums NodeSortMode und NodeDtoSortMode sind etwas zu allgemein bennant. Besser: TaxonNodeSortMode und
TaxonNodeD...
Andreas Kohlbecker

06/29/2020

11:55 PM Revision cf186d49 (cdmlib): revert load with update only
Andreas Müller
11:08 PM Revision 08fc65ee (cdmlib): revert moving loadRecursive maps and collections
Andreas Müller
10:33 PM Revision dc307095 (cdmlib): remove redundant code (cont.)
Andreas Müller
10:08 PM Revision cd1129cb (cdmlib): remove redundant code
Andreas Müller
06:26 PM Revision 951591a8 (taxeditor): add loading of default language to CdmStoreConnector
Andreas Müller
06:26 PM Revision caceb054 (taxeditor): cleanup
Andreas Müller
06:09 PM Revision 2203967c (cdm-dataportal): ref #9102 proper conversion of block to render array and avoiding duplicate bibliography blocks
Andreas Kohlbecker
05:43 PM Revision ab8cbdf4 (taxeditor): upgrading common-beanutils to 1.9.4
Andreas Kohlbecker
05:41 PM Revision 7eef3600 (cdmlib): upgrading common-beanutils to 1.9.4 and opting out from BEANUTILS_520
Andreas Kohlbecker
05:08 PM Revision faf574aa (cdmlib): adapt Language to store cached default language term locally as static variable
Andreas Müller
05:07 PM Revision 39a33a72 (cdmlib): handle update without recursion correctly in CacheLoader
Andreas Müller
05:04 PM Revision 344a782d (cdmlib): cleanup and rename methods and fix Fixme in ProxyUtils
Andreas Müller
04:37 PM Revision 9a9d9186 (taxeditor): beanutils 1.9.2
Andreas Kohlbecker
04:14 PM Revision 525e9e11 (cdmlib): ref #9102 TaxonNodeDto with statusNote, nodeStatus as status and status as TaxonStatus
Andreas Kohlbecker
04:13 PM Revision 54164245 (cdm-dataportal): ref #9102 adapting to modified TaxonNodeDto
Andreas Kohlbecker
02:40 PM Revision 6157a0af (taxeditor): managing commons-beanutils-1.9.2.jar via maven
Andreas Kohlbecker
02:25 PM Revision 687bfc97 (taxeditor): avoid NPE and fix closing of obsolete editors when deleting classification
Katja Luther
02:03 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
Katja Luther wrote:
> Andreas Müller wrote:
> > I am sure there is a duplicate ticket for this already. Can you ple...
Andreas Müller
01:25 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
Andreas Müller wrote:
> I am sure there is a duplicate ticket for this already. Can you please check.
I only foun...
Katja Luther
01:24 PM feature request #8585 (Resolved): Factual Data View: new DesctiptionElements shoud be selected immediately
this is fixed. Please review. Katja Luther
01:52 PM Revision a936868b (taxeditor): ref #8585: remove not necessary method
Katja Luther
01:48 PM Revision ffb73e56 (taxeditor): avoid widget is disposed exception
Katja Luther
01:22 PM Revision b3860b27 (taxeditor): set selection after facts creation
Katja Luther
01:10 PM Revision 9b8eb609 (cdm-dataportal): ref #9102 fixing TaxonNode.source footnote missing & generalizing creation of bibliography block
Andreas Kohlbecker
12:58 PM Revision 713fff1d (taxeditor): cleanup
Andreas Müller
12:47 PM Revision d4180c93 (cdmlib): ref #9078 allow ignoring recursive loading of terms (cont.)
Andreas Müller
12:46 PM Revision e0788e20 (cdmlib): cleanup
Andreas Müller
12:43 PM Revision 323606bc (cdmlib): rename internal loadRecursive calls to distinguish them more clearly
Andreas Müller
12:28 PM Revision 7ccb6888 (cdm-dataportal): whitespace
Andreas Kohlbecker
11:54 AM Revision 3049fdcd (cdm-dataportal): ref #9102 convering both cases for taxon in current classification test: TaxonNode and TaxonNodeDto
Andreas Kohlbecker
11:10 AM Revision 8db5e42f (cdm-dataportal): adapting tests
Andreas Kohlbecker
09:49 AM Revision 9722b576 (cdmlib): Revert "upgrade commons-beanutils from 1.9.2 to 1.9.4"
This reverts commit 8f08a3aec70ba12d48ab061327524a69d766a109. Andreas Müller
09:36 AM Revision 8c2c68ce (taxeditor): fix NPE in reference bulk editor
Katja Luther
09:24 AM Revision 68405a5a (taxeditor): cleanup
Andreas Müller
09:24 AM Revision 0dd61d7a (taxeditor): rename deproxy to deproxyIfInitialized
Andreas Müller
09:22 AM Revision 18efc5a7 (cdmlib): rename deproxy to deproxyIfInitialized
Andreas Müller
02:31 AM Revision 7c37f7fa (taxeditor): cleanup
Andreas Müller
02:29 AM Revision fd280052 (taxeditor): cleanup CdmEntitySessionAwareTest
Andreas Müller
12:58 AM Revision efd33966 (cdm-vaadin): rename CdmCacher to CdmCacherBase
Andreas Müller
12:57 AM feature request #9078 (Resolved): Handle name parsing and deduplication on server side
Applied in changeset commit:taxeditor|b6f9eb474c27f732c7f2cdc0d0fd5a6a5e45d174. Andreas Müller
12:56 AM Revision b6f9eb47 (taxeditor): fix #9078 finally switch to new deduplication handling (but keep old code until fully reviewed)
Andreas Müller
12:52 AM Revision c86eab33 (taxeditor): ref #9078 include Representation to permanent cache
Andreas Müller
12:51 AM Revision 42d09199 (taxeditor): cleanup
Andreas Müller
12:50 AM Revision 71f697d9 (taxeditor): rename CdmCacher to CdmCacherBase
Andreas Müller
12:48 AM Revision 0c63c580 (cdmlib): ref #9078 allow ignoring recursive loading of terms
Andreas Müller

06/28/2020

11:47 PM Revision 1edf162a (cdmlib): improve logging for CacheLoader
Andreas Müller
10:06 PM Revision 4b2b6fc7 (cdmlib): rename CdmCacher to CdmCacherBase
Andreas Müller
10:02 PM Revision 22c3bea0 (cdmlib): renaming "putToCache" and "entityAlreadyVisisted" "classFields", fix logging text and extract method for field handling
Andreas Müller
08:51 PM Revision 7c0aeabf (cdmlib): cleanup
Andreas Müller
04:12 PM Revision 36b21d6e (taxeditor): cleanup
Andreas Müller
03:30 PM Revision b31b98ce (taxeditor): remove unitils dependencies
Andreas Müller
03:23 PM Revision 8d5dc888 (taxeditor): upgrade commons-beanutils from 1.9.2 to 1.9.4
Andreas Müller
03:00 PM Revision 8f08a3ae (cdmlib): upgrade commons-beanutils from 1.9.2 to 1.9.4
Andreas Müller

06/27/2020

06:49 PM Revision ec6ac40a (taxeditor): cleanup getService
Andreas Müller
06:33 PM bug #9070: Adapt preference page to feature.isAvailableFor...
Looks like this was fixed during 5.15 already. Should we move it back? Andreas Müller
06:29 PM Revision 4b24820e (cdmlib): ref #9071 improve with-month-name period parsing
Andreas Müller
06:05 PM Revision 287b0222 (taxeditor): ref #9071 update MANIFEST.MF to include format.common package
Andreas Müller
11:54 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
An ExtendedTimePeriodFormatter exists now. Details might be improved in future.
I implemented formatters for all 3 T...
Andreas Müller
11:52 AM Revision b93b6f69 (taxeditor): ref #9071 use ExtendedTimePeriodFormatter in DescriptionHelper and improve formatting for CategoricalData
Andreas Müller
11:45 AM Revision 2f4f765e (cdmlib): add preferred languages to DesciptionElementFormatterBase
Andreas Müller
11:20 AM Revision e25cc9dd (cdmlib): cleanup
Andreas Müller
11:20 AM Revision 3ee87683 (cdmlib): ref #9071 add formatter for VerbatimTimePeriod
Andreas Müller
11:08 AM Revision dea49164 (cdmlib): ref #9071 add formatter in ExtendedTimePeriod.toString
Andreas Müller
11:01 AM Revision 16f88eb2 (cdmlib): cleanup
Andreas Müller
11:01 AM Revision d846e295 (cdmlib): ref #9071 add additional ExtendedTimePeriodFormatter test
Andreas Müller
10:51 AM Revision 6d7ea74e (cdmlib): ref #9071 create TimePeriodFormatter and ExtendedTimePeriodFormatter and move toString methods
Andreas Müller
10:47 AM Revision 80466da5 (cdmlib): move some formatter tests to correct package
Andreas Müller
09:45 AM Revision 8fe64a0b (cdmlib): ref #9071, ref #6276 improve TimePeriod parsing with continued
Andreas Müller
09:44 AM Revision 20e45ee8 (cdmlib): cleanup
Andreas Müller
09:09 AM Revision e90c7158 (cdm-dataportal): ref #6276, ref 9071 adapt dataportal tests to new TimePeriod formatting (cont.)
Andreas Müller
09:06 AM bug #6276 (Resolved): Nomenclatural references show parsed date string instead of publication year
This should be fixed now. Andreas Müller
09:03 AM Revision def46519 (cdmlib): ref #9071, ref #6276 improve TimePeriod parsing for periods with shared year or month and some other
Andreas Müller
08:43 AM Revision b0ceec1a (cdm-dataportal): ref #6276, ref 9071 adapt dataportal tests to new TimePeriod formatting
Andreas Müller

06/26/2020

11:21 PM Revision b486d565 (cdmlib): ref #7709 rename newEntity to volatileEntity
Andreas Müller
11:12 PM Revision ac3d6e3a (taxeditor): ref #7709 use load() for newEntities
Andreas Müller
11:11 PM Revision 997dddd5 (taxeditor): cleanup
Andreas Müller
11:10 PM Revision 8991d6e9 (cdmlib): ref #7709 rename addNewEntity to putNewEntity and check for existing entity
Andreas Müller
11:09 PM Revision b4c19aff (cdmlib): cleanup
Andreas Müller
11:09 PM Revision d7be01af (cdmlib): ref #7709 rename putMethods in cacher
Andreas Müller
11:05 PM Revision 1d2c4048 (cdmlib): ref #9104 add NatrualLanguageTerm to hibernate.cfg.xml and recompile model cache
Andreas Müller
10:25 PM feature request #9104 (New): NaturalLanguageTerm
Add NaturalLanguageTerm to the loaded terms. Currently it is loaded on the fly (which creates overhead in TaxEditor a... Andreas Müller
08:50 PM Revision 8d388c9a (cdmlib): add newEntitiesMap.clear to Cacher.clear
Andreas Müller
08:50 PM Revision b51bec3a (cdmlib): rename load to put
Andreas Müller
08:50 PM Revision db6e8702 (cdmlib): cleanup
Andreas Müller
07:36 PM Revision 56a4e7d4 (taxeditor): cleanup
Andreas Müller
07:35 PM Revision 5b336515 (taxeditor): removing unnecessary class parameters from deproxy and remove usage of load(cdmBase, clazz)
Andreas Müller
06:48 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
By the way, there is already a UUID based cacher in cdmlib-services (eu.etaxonomy.cdm.api.cache.CdmCacher) Andreas Müller
05:44 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
To me it is not clear anymore, why the CdmTransientEntityCacher should handle only transient but not volatile objects... Andreas Müller
05:46 PM Revision 281ec7b2 (cdm-dataportal): ref #9102 adapting tests
Andreas Kohlbecker
03:52 PM bug #9102 (Resolved): taxonNode status icon breaks sort order in taxontree
Andreas Kohlbecker
03:51 PM Revision f959fedb (cdmlib): ref #9102 using TaxonNodeDto instead of TaxonNodeDtoBeanProcessor for multiple webservices and adding sortMode parameter - bug fix
Andreas Kohlbecker
03:32 PM bug #9103 (Feedback): missing exception handling in TaxoNodeDto
Andreas Kohlbecker
03:32 PM bug #9103: missing exception handling in TaxoNodeDto
@Katja: has far as I could see, this stems from you, was there any urgent reason for this? Andreas Kohlbecker
03:31 PM bug #9103 (Closed): missing exception handling in TaxoNodeDto
see
~~~java
try{
TaxonNode parent = taxonNode.getParent();
parentUUID = parent...
Andreas Kohlbecker
03:28 PM Revision 562acef2 (cdmlib): using TaxonNodeDto instead of TaxonNodeDtoBeanProcessot for multiple webservices and adding sortMode parameter
Andreas Kohlbecker
03:27 PM Revision 64cfdac1 (cdm-dataportal): switching portal to real TaxonNodeDTOs
Andreas Kohlbecker
12:10 PM Revision 42c3d8cd (cdmlib): cleanup
Andreas Müller
11:51 AM Revision c844706d (taxeditor): fix possible concurrent modification exception
Andreas Müller
11:20 AM feature request #3097 (Worksforme): disable editors if a user has insufficient grants for a taxon or taxon node.
Andreas Müller wrote:
> I am not sure if I understand what is meant here with "enabled".
> Currently it seems possi...
Katja Luther
10:08 AM bug #9092 (Closed): Multiple Representation Exception when editing factual data
The problems were caused by a missing modelCache update, this is done and it works as expected. Katja Luther
03:04 AM Revision ac1b1365 (cdmlib): update cached cdm model to 5.15.2
Andreas Müller
03:03 AM Revision 6197d70a (cdmlib): cleanup
Andreas Müller
01:47 AM Revision 62661acc (taxeditor): ref #9071 use toString() instead of getTimePeriod()
Andreas Müller
01:46 AM Revision 6876aa51 (cdmlib): ref #9071 remove ExtendedTimePeriodPartialFormatter which is no longer needed
- ExtendedTimePeriod.toString() should be enough Andreas Müller
01:43 AM Revision b3b61969 (taxeditor): cleanup
Andreas Müller
01:42 AM Revision ffd7b090 (taxeditor): ref #9071 use getTimePeriod instead of ExtendedTimePeriodPartialFormatter
Andreas Müller
01:22 AM Revision fddcac5e (cdmlib): ref #9071, ref #6276 fix order of TimePeriodFormatting to DD MMM YYYY (cont.)
Andreas Müller
01:21 AM Revision f7d206b6 (cdmlib): cleanup
Andreas Müller
01:20 AM Revision ce666ef3 (cdmlib): ref #9071, ref #6276 fix order of TimePeriodFormatting to DD MMM YYYY
Andreas Müller
12:58 AM bug #6276 (In Progress): Nomenclatural references show parsed date string instead of publication year
Andreas Müller
12:56 AM Revision d6eec685 (cdmlib): ref #9071 use new partial formatting also in ExtendedTimePeriodPartialFormatter
Andreas Müller
12:50 AM Revision fb5527b8 (cdmlib): cleanup
Andreas Müller
12:47 AM Revision bf3b1132 (cdmlib): ref #9071, ref #6276 Change TimePeriodFormatting to YYYY-MMM-DD
Andreas Müller

06/25/2020

07:03 PM feature request #9101: Add feature "Fruiting Period"
Applied in changeset commit:cdmlib|33ab47c40c8cc58e91294096f72d770f71d398b8. Andreas Müller
06:54 PM feature request #9101 (Resolved): Add feature "Fruiting Period"
Andreas Müller
06:23 PM feature request #9101 (Closed): Add feature "Fruiting Period"
similar to flowering period #8991 Andreas Müller
07:03 PM Revision 33ab47c4 (cdmlib): fix #9101 fix compile error
Andreas Müller
06:50 PM feature request #8991: Add feature "Flowering Period"
Applied in changeset commit:cdmlib|25e3014d375dbc2951b2ff2053a1925e2c5a8a47. Andreas Müller
06:42 PM feature request #8991: Add feature "Flowering Period"
Andreas Müller wrote:
> Still need to check if supportsTemporalData is autoamtically created on production (on test ...
Andreas Müller
06:50 PM Revision 6f4cffe6 (cdmlib): cleanup
Andreas Müller
06:50 PM Revision 25e3014d (cdmlib): fix #8991 fruiting period added
Andreas Müller
06:47 PM bug #9092: Multiple Representation Exception when editing factual data
As the problems comes with source and referenceForParentChildRelation I tried to revert the changes for the reference... Katja Luther
12:47 PM bug #9092: Multiple Representation Exception when editing factual data
deeper debugging results that the multiple representation does not come from the sec reference but from the descripti... Katja Luther
06:29 PM bug #9102 (Closed): taxonNode status icon breaks sort order in taxontree
for example in the cihorieae portal *Incertae sedis* and *Nomina excludenda* should come as last in the tree:
![](...
Andreas Kohlbecker
06:22 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
moreover the whole reference object as serialized in webservice responses can be simplified a lot. The `authorship` ... Andreas Kohlbecker
05:57 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
the cause for this bug was not related to #7331 but is caused by an unexpected behavior of ` AdvancedBeanInitializer.... Andreas Kohlbecker
01:08 PM bug #9095 (Resolved): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
solved by catching the exception in the `TeamOrPersonBaseBeanProcessor` since a real solution (#7331) may need some m... Andreas Kohlbecker
12:13 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
this problem is potentially highly related to #7331 since the init strategy includes the `sources.citation.authorshi... Andreas Kohlbecker
11:59 AM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
it apends at `DistributionInfoDTO.tree.children.children.children.data.sources.citation.authorship.nomenclaturalTitle... Andreas Kohlbecker
08:36 AM bug #9095 (Closed): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
test links:
* https://europlusmed.org/cdm_dataportal/taxon/7c8012f2-bbda-4e51-83cd-39a06994098c
* http://cichorie...
Andreas Kohlbecker
06:15 PM feature request #9100 (New): Improve temporal facts data model
AM (an WGB):
ich [bin im Cubaportal] auf die Phenology-Daten gestolpert.
Z.B. http://portal.cybertaxonomy.org/...
Andreas Müller
06:10 PM Revision e7f3789b (cdm-dataportal): refactoring theme_cdm_reference to cdm_reference_markup
Andreas Kohlbecker
05:40 PM Revision a8905b5d (cdmlib): reverting commit last for ref #9095, ref #9096, ref #7331 for a better solution
Andreas Kohlbecker
01:59 PM Revision 927a1c72 (cdmlib): ref #7331 restoring lost test methods comment
Andreas Kohlbecker
01:06 PM bug #9096 (Duplicate): LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon()
Andreas Kohlbecker
01:05 PM bug #9096: LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon()
duplicate of #9095 Andreas Kohlbecker
08:44 AM bug #9096 (Duplicate): LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon()

test link https://europlusmed.org/cdm_dataportal/taxon/7c8012f2-bbda-4e51-83cd-39a06994098c
~~~
08:42:18.346 ...
Andreas Kohlbecker
12:22 PM Revision af4969c8 (cdmlib): ref #9095, ref #9096 catching LIEs at Team.members in TeamOrPersonBaseBeanProcessor to handle problems potentially originating from bug ref #7331
Andreas Kohlbecker
12:16 PM task #7330: TitleAndNameCacheAutoInitializer misses out References
potentially a duplicate of #7331 - needs to be checked, though!!! Andreas Kohlbecker
11:38 AM bug #9099 (Closed): placemark icon in kml map not clickable
as long the error radius diameter exceeds the placemark icon the icon can not be clicked
http://test.e-taxonomy.e...
Andreas Kohlbecker
11:35 AM bug #9097: specimen coordinate links in maps to geohack service broken
example link for testing http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/ec22a1f9-9fd5-4cc... Andreas Kohlbecker
11:32 AM bug #9097 (Resolved): specimen coordinate links in maps to geohack service broken
Applied in changeset commit:cdmlib|00a1503b7cf1c77079368394dfcc3375c6d733f9. Andreas Kohlbecker
11:23 AM bug #9097 (In Progress): specimen coordinate links in maps to geohack service broken
Andreas Kohlbecker
09:05 AM bug #9097 (Closed): specimen coordinate links in maps to geohack service broken
the service api has changed, links should now be like
https://geohack.toolforge.org/geohack.php?language=en&params...
Andreas Kohlbecker
11:32 AM Revision 00a1503b (cdmlib): fix #9097 updating to new geohack API
Andreas Kohlbecker
10:47 AM Revision 652b7ffc (cdm-dataportal): typos
Andreas Kohlbecker
01:56 AM Revision 84bff3eb (taxeditor): cleanup
Andreas Müller
01:55 AM Revision 1871c770 (taxeditor): revert removing findWithUpdate
Andreas Müller
01:53 AM Revision 2d3429b0 (cdmlib): revert removing findWithUpdate
Andreas Müller
01:11 AM Revision 3886664b (taxeditor): cleanup
Andreas Müller
12:48 AM Revision 31cfe10f (taxeditor): javadoc
Andreas Müller
12:47 AM Revision 270dbad4 (taxeditor): remove findWithUpdate from CommonService
Andreas Müller
12:40 AM Revision 604437b2 (cdmlib): remove redundant method findWithUpdate() from ICommonService (use find() instead).
Andreas Müller
12:39 AM Revision d8792e71 (cdmlib): cleanup
Andreas Müller
12:17 AM Revision e0cc4f18 (taxeditor): ref #9078 further improve null entity handling in ConversationalTransientEntityCacher (just in case)
Andreas Müller
12:10 AM Revision d6969ebf (taxeditor): ref #9078 fix null entity handling in ConversationalTransientEntityCacher
Andreas Müller

06/24/2020

11:53 PM Revision d6d15f6c (taxeditor): ref #9078 remove commented code in ParseHandler
Andreas Müller
11:53 PM Revision ffe41dcd (taxeditor): cleanup
Andreas Müller
11:49 PM Revision 2d71110d (taxeditor): ref #9078 adapt ParseHandler to new serverside deduplication
Andreas Müller
11:48 PM Revision 02e380e6 (taxeditor): ref #9078 improve UpdateResult handling in CdmTransientEntityCacher
- include result entity to the updated objects
- load updated objects also if they their ID does not yet exist in Ca...
Andreas Müller
11:48 PM Revision d990fa03 (taxeditor): cleanup
Andreas Müller
11:35 PM Revision a19d8b1b (cdmlib): cleanup
Andreas Müller
10:55 PM Revision 6f33eb6e (taxeditor): cleanup
Andreas Müller
09:53 PM bug #9092: Multiple Representation Exception when editing factual data
Katja Luther wrote:
> mail Sophia:
>
> hab gerade noch festgestellt, dass der Fehler nur bei Arten kommt, bei G...
Katja Luther
09:38 PM bug #9092: Multiple Representation Exception when editing factual data
Now I could reproduce the exception and it was again the sec reference of the taxon.
The steps to reproduce are:
...
Katja Luther
09:29 PM bug #9092: Multiple Representation Exception when editing factual data
mail Sophia:
Generell übertrage ich halt im Moment immer von der Druckversion der Flora Cuba die Daten. Also norma...
Katja Luther
02:51 PM bug #9092: Multiple Representation Exception when editing factual data
In this case the reference which has multiple representations was [Reference [type=WebPage, title=The Spermatophyta o... Katja Luther
10:56 AM bug #9092: Multiple Representation Exception when editing factual data
mail Sophia:
es passiert sowohl wenn ich nur eine Sache eingegeben habe als auch wenn es mehrere waren, normalerwe...
Katja Luther
06:59 AM bug #9092 (Closed): Multiple Representation Exception when editing factual data
Hallo liebes Edit Team,
seit dem Update bekomme ich diese Fehlermeldung super häufig wenn ich bei den Factual Data i...
Katja Luther
03:45 PM task #9094 (Closed): Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource
This is only required on test servers which have been updated during development of 5.15. Most DBs have already been ... Andreas Müller
12:24 PM bug #9093 (New): Exception after deleting two references
mail WB:
Hallo
im Bulk Editor – ich habe eine Ref. gelöscht, anschl. nicht gespeichert, die nächste gelöscht (nac...
Katja Luther
12:11 PM Revision 81443195 (cdm-dataportal): improving labels for image viewers, adding description
Andreas Kohlbecker
11:55 AM Revision 97104b10 (cdm-dataportal): Merge tag '5.15.1' into develop
tagging release 1.15.1 Andreas Kohlbecker
11:54 AM Revision 5426f097 (cdm-dataportal): Merge branch 'hotfix/5.15.1'
Andreas Kohlbecker
11:54 AM Revision 3a81b245 (cdm-dataportal): ref #8134 using other error message channel
Andreas Kohlbecker
11:26 AM Revision ff28ae45 (cdmlib): ref #9010 proper initialization of TaxonNode.source
Andreas Kohlbecker
11:25 AM Revision 178d1ae6 (cdm-dataportal): ref #9010 solving some problems regarding sources and annotations for TaxonNodes
Andreas Kohlbecker
10:56 AM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded and unplaced taxa should ... Andreas Müller
06:58 AM feature request #7580: User wishes: CharacterMatrix
these issues are not solved yet. Katja Luther
06:56 AM task #8130: Check if related feature data is cleared when supported facts type is changed
we need to decide how to handle this. Katja Luther

06/23/2020

11:51 PM Revision cfc9fe89 (taxeditor): cleanup
Andreas Müller
11:48 PM Revision a0cc1cd6 (cdmlib-apps): ref #9041 adapt UzbekistanAltitudeActivator to latest changes
Andreas Müller
11:48 PM Revision f9582330 (cdmlib-apps): adapt some Activators to new permission package position
Andreas Müller
11:46 PM Revision 968fbd9e (cdmlib-apps): cleanup
Andreas Müller
10:32 PM Revision 9803e871 (cdm-dataportal): adding missing space in citation - adapting tests
Andreas Kohlbecker
04:20 PM feature request #8134 (Resolved): Implement verbatim type information in dataportal
Andreas Kohlbecker
04:19 PM feature request #8165: enable logback jmx for cdm-server
we switched to logback for the cdm-server Andreas Kohlbecker
03:16 PM feature request #9064 (Closed): Add ExternalLinks to IdentifiableEntities
Andreas Müller
03:15 PM feature request #9090: Implement external links for identifiable entities in TaxEditor
Once this is implemented for references we may further discuss #7984 Andreas Müller
03:08 PM feature request #9090 (New): Implement external links for identifiable entities in TaxEditor
This is most important for references.
Minimum implementation should be in supplemental data view.
But at least f...
Andreas Müller
03:13 PM feature request #9091 (New): Show external links for identifiable entites in dataportal
Most important for references Andreas Müller
03:02 PM feature request #9043 (Closed): Add feature "Altitude"
Andreas Müller
03:01 PM task #9037 (Closed): Remove old Feature.supportedXXX columns
Andreas Müller
03:01 PM task #9036 (Closed): Remove old TaxonNode.unplaced/doubtful/excluded columns
Andreas Müller
03:00 PM feature request #9004 (Closed): Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
Andreas Müller
02:43 PM Revision a866450a (cdm-server): Merge branch 'release/5.15.0' into develop
jenkins
02:43 PM Revision 0ca65bf5 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
02:42 PM Revision 259163e9 (cdm-server): updating poms for branch'release/5.15.0' with non-snapshot versions
jenkins
02:42 PM Revision e4627748 (cdm-webapp): Merge branch 'release/5.15.0' into develop
jenkins
02:42 PM Revision db4a0cdc (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
02:41 PM Revision 89552d01 (cdm-webapp): updating poms for branch'release/5.15.0' with non-snapshot versions
jenkins
02:41 PM Revision d8109b58 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.15.0
jenkins
02:35 PM Revision 6d1d2edb (cdm-vaadin): Merge branch 'release/5.15.0' into develop
jenkins
02:35 PM Revision 32b08ce0 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
02:31 PM Revision 6b943263 (cdm-vaadin): updating poms for branch'release/5.15.0' with non-snapshot versions
jenkins
02:31 PM Revision 921f557e (cdm-vaadin): jenkins bumping cdmlib.version to 5.15.0
jenkins
02:31 PM Revision c6e1129a (taxeditor): Merge branch 'release/5.15.0' into develop
jenkins
02:31 PM Revision 146177b1 (taxeditor): Merge branch 'release/5.15.0'
jenkins
02:30 PM Revision 86229aab (cdm-dataportal): Merge branch 'release/5.15.0' into develop
jenkins
02:30 PM Revision 99cdc7e2 (cdm-dataportal): updating poms for branch'release/5.15.0' with non-snapshot versions
jenkins
02:30 PM Revision 68527ca1 (cdm-dataportal): release-preparation: production level css
jenkins
02:28 PM Revision c60806e6 (cdmlib): Updating develop poms back to pre merge state
jenkins
02:28 PM Revision 7e1550c6 (cdmlib): Merge branch 'master' into develop
jenkins
02:28 PM Revision 98a29650 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
02:27 PM Revision 2a1dcb48 (cdmlib): Merge branch 'release/5.15.0'
jenkins
02:18 PM bug #9055 (Feedback): Relabel "Type Designation" to "Type Information"
Needs final discussion Andreas Müller
02:08 PM Revision d80ee113 (cdmlib): updating poms for branch'release/5.15.0' with non-snapshot versions
jenkins
02:01 PM Revision 652a9ae4 (taxeditor): Updated version in pom / project files to taxeditor version : 5.16.0-SNAPSHOT and cdmlib version : 5.16.0-SNAPSHOT
jenkins
02:00 PM Revision dbe17643 (taxeditor): Updated version in pom / project files to taxeditor version : 5.15.0 and cdmlib version : 5.15.0
jenkins
01:43 PM task #9017 (Resolved): Update image link for FoG Willing images
Andreas Müller
01:42 PM Revision 670c32ca (cdm-dataportal): updating poms for 5.16.0-SNAPSHOT development
jenkins
01:41 PM Revision 0cce624e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.15.0-SNAPSHOT
jenkins
01:41 PM Revision 131402e0 (cdm-webapp): updating poms for 5.16.0-SNAPSHOT development
jenkins
01:41 PM Revision 3d9191b1 (cdm-webapp): updating poms for 5.15.0 branch with snapshot versions
jenkins
01:41 PM Revision 0722cc46 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.16.0-SNAPSHOT
jenkins
01:37 PM Revision b4c7e84e (cdm-vaadin): jenkins bumping cdmlib.version to 5.15.0-SNAPSHOT
jenkins
01:37 PM Revision 83c5ba8d (cdm-vaadin): updating poms for 5.16.0-SNAPSHOT development
jenkins
01:37 PM Revision e8f112a8 (cdm-vaadin): updating poms for 5.15.0 branch with snapshot versions
jenkins
01:37 PM Revision 8937df82 (cdm-vaadin): jenkins bumping cdmlib.version to 5.16.0-SNAPSHOT
jenkins
01:37 PM Revision 6a03a31e (cdm-server): updating poms for 5.16.0-SNAPSHOT development
jenkins
01:19 PM Revision 4f768aa9 (cdmlib): updating poms for 5.16.0-SNAPSHOT development
jenkins
01:19 PM Revision 558fcaf1 (cdmlib): updating poms for 5.15.0 branch with snapshot versions
jenkins
01:19 PM Revision 394d8d07 (cdm-dataportal): adding missing space in citation
Andreas Kohlbecker
01:07 PM Revision e5a89a58 (cdm-dataportal): ref #8134 deterministic sort order for type designations - bug fix
Andreas Kohlbecker
12:52 PM Revision f639f3b7 (cdm-dataportal): ref #8134 deterministic sort order for type designations - adapting test
Andreas Kohlbecker
12:52 PM Revision 04d5812b (cdm-dataportal): ref #8134 deterministic sort order for type designations
Andreas Kohlbecker
10:09 AM Revision d4e27dd5 (cdm-dataportal): adapting test to changes made in a6c4c53c
Andreas Kohlbecker
09:30 AM Revision 867d1f58 (cdm-dataportal): ref #8134 fixing missing render_type_designations()
Andreas Kohlbecker
09:06 AM Revision aab00a6d (cdmlib): ref #9078, ref #9085 fix deduplication of nom.ref. author
Andreas Müller
08:54 AM Revision 4eab6eeb (cdm-dataportal): moving methods from theme to inc file
Andreas Kohlbecker
08:36 AM Revision fcf4e915 (cdmlib): cleanup
Andreas Müller
08:36 AM Revision a9bd2165 (cdmlib): ref #9078, ref #9085 improve deduplication of teams nom.ref. authors
Andreas Müller

06/22/2020

11:46 PM Revision 45ecfdaa (cdmlib): cleanup
Andreas Müller
11:25 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Hmm, this behavior definitely needs further discussion. I do not remember that we had decided to implement it this wa... Andreas Müller
10:57 PM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
However, it was somehow difficult to test this ticket as the behavior was not always reproducable. One time selecting... Andreas Müller
10:28 PM feature request #9084: Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
Katja Luther wrote:
> Did you try this with different descriptions?
> I never got this exception, maybe you remove...
Andreas Müller
09:41 PM feature request #9084: Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
Did you try this with different descriptions?
I never got this exception, maybe you removed the descriptionElementS...
Katja Luther
08:08 PM feature request #9084 (Feedback): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
When I tried to delete a description from matrix without deleting from specimen I got the following exception:
~~~...
Andreas Müller
10:52 PM Revision cab7b403 (cdmlib): fix NPE during specimen clone for matrix
Andreas Müller
10:51 PM Revision 3c2c69c6 (cdmlib): cleanup
Andreas Müller
09:06 PM Revision 42d15fca (cdmlib): add specimen to updateResult
Katja Luther
09:01 PM Revision c04426d1 (taxeditor): ref #8785:update facts view after searching
Katja Luther
08:58 PM Revision 5c9a95f8 (taxeditor): fix CCE in descriptive dataset editor
Katja Luther
08:02 PM feature request #9089 (New): Show descriptive datasets in description details view
Currently it is necessary to open the referencing objects view to know if a description is part of a descriptive data... Andreas Müller
06:29 PM bug #9088 (Closed): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor

~~~
last remote method : http://localhost:8080/remoting/name.service
last remote request client time : 2020-06-22...
Andreas Kohlbecker
06:25 PM feature request #8134: Implement verbatim type information in dataportal
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > TextualTypeDesignation are not supposed to contain validly pu...
Andreas Kohlbecker
05:04 PM feature request #8134: Implement verbatim type information in dataportal
Andreas Kohlbecker wrote:
> TextualTypeDesignation are not supposed to contain validly published type designations, ...
Andreas Müller
04:45 PM feature request #8134: Implement verbatim type information in dataportal
TextualTypeDesignation are not supposed to contain validly published type designations, therefore it makes no sense t... Andreas Kohlbecker
01:48 PM feature request #8134: Implement verbatim type information in dataportal
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The textual type designation are now at least shown in the ta...
Andreas Kohlbecker
06:18 PM bug #9087 (Closed): typedesignation/{uuid}/annotations must return pager objects
see commit:cdm-dataportal|45b496bc -> cdm_api.module which fixes the problem for #8134
Test page `reference_int/cd...
Andreas Kohlbecker
06:13 PM Revision 45b496bc (cdmlib): ref #8134 fixing missing initialization of TaonNode.statusNode and source.citation
Andreas Kohlbecker
06:11 PM Revision a6c4c53c (cdm-dataportal): ref #8134 dealing with web service problems returning list instead of pagers and better placement of footnotes
Andreas Kohlbecker
06:09 PM Revision e26fd740 (cdmlib): ref #9078 adapt return type of service.parseName
Andreas Müller
05:30 PM Revision 60009dff (cdmlib): ref #9004 change source type to DescriptionElementSource for TaxonNode.source
Andreas Müller
04:55 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
The source can be edited via the taxon node wizard ("placement source") but only reference (and if a new node is crea... Andreas Müller
01:15 PM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
display of status notes, source and annotations is implemented.
Is there any way to edit source and annotations ...
Andreas Kohlbecker
04:24 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Katja Luther wrote:
> Andreas Müller wrote:
> > There is also another strange behavior. When I do "reattache" the s...
Katja Luther
10:00 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller
03:43 PM Revision 1ce6e8ce (cdm-dataportal): ref #8134 trimming text
Andreas Kohlbecker
03:43 PM Revision 6325c7ad (cdm-dataportal): ref #8134 test for TextualTypeDesignation (requires new page class: NamePage)
Andreas Kohlbecker
03:09 PM Revision 4123dbbc (taxeditor): update facts view after searching
Katja Luther
02:09 PM Revision 829d7f26 (cdm-dataportal): ref #8134 render_type_designations() cleaning code
Andreas Kohlbecker
02:07 PM Revision 79904336 (cdm-dataportal): ref #8134 moving render_type_designations() to include file
Andreas Kohlbecker
02:06 PM Revision 0c720425 (cdm-dataportal): ref #8134 refactoring theme to render function
Andreas Kohlbecker
01:13 PM Revision 95e00758 (cdm-dataportal): ref #9010 showing status notes, source and annotations
Andreas Kohlbecker
11:46 AM Revision d4db3c89 (taxeditor): ref #8785: adapt to changes in method signature of mergeDescriptions
Katja Luther
11:45 AM Revision 4aa29834 (cdmlib): ref #8785: mergeDescriptions returns updateResult
Katja Luther

06/21/2020

12:56 AM Revision 4fc40f5c (cdmlib): ref #9078 add parsing for existing names (II)
Andreas Müller

06/20/2020

11:00 AM Revision eeff4578 (taxeditor): ref #8785: fix saving of newly created descriptions for descriptive dataset
Katja Luther
10:56 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Now add and delete should work. But if a specimen contains more than one description that could be used for cloning, ... Katja Luther
10:55 AM Revision 831a079e (cdmlib): ref #8785: fix saving of newly created descriptions for descriptive dataset
Katja Luther
09:34 AM Revision 0020d108 (cdmlib): rf #9078 add parsing for existing names
Andreas Müller
09:33 AM Revision 8ce66ade (cdmlib): ref #9078 remove logging for deduplication
Andreas Müller
09:31 AM Revision d285f18d (cdmlib): ref #9085 improve X_OR_FIRST_NULL handling
Andreas Müller
09:23 AM bug #8959 (Closed): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Now it seems to work as expected Andreas Müller
08:47 AM bug #9058 (Feedback): Hibernate loggs error when creating schema on MySQL due to failing index creation
I copied the exception handling to a new ticket #9086.
I think the real issue of this ticket (exceptions are throw...
Andreas Müller
08:45 AM feature request #9086 (New): Throw exception during schema generation if an exception occurrs
copied from #9058
for a detailed description see there.
Different solutions exist by either finding a way to ru...
Andreas Müller
08:37 AM bug #8857 (Closed): NonUniqueObjectException when creating new taxon
That was because #9078 was set as blocker. Andreas Müller
07:50 AM bug #8857: NonUniqueObjectException when creating new taxon
I can't close the ticket because the closed status is not available Katja Luther
07:49 AM bug #8857: NonUniqueObjectException when creating new taxon
tested it with a author and reference already in database and it works like expected. Katja Luther
08:35 AM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
this is done. Katja Luther
08:34 AM feature request #9085 (In Progress): Improve deduplication of parsed names
Andreas Müller
02:21 AM Revision c8f12e19 (taxeditor): cleanup
Andreas Müller
12:59 AM Revision 97a2bbb9 (taxeditor): ref #8754: adapt description for delete descriptions
Katja Luther
12:57 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> So back to original issue of this ticket.
>
> The configurator now looks like
>
> ![]...
Katja Luther
12:44 AM Revision 1de7515f (taxeditor): ref #8785: smaller issues in character matrix - add and remove descriptions
Katja Luther

06/19/2020

11:35 PM bug #8857 (Resolved): NonUniqueObjectException when creating new taxon
With the changes for #9078 this is fixed now. Katja can you please again check and close the ticket if it works Andreas Müller
11:26 PM Revision c078cfb8 (cdmlib): ref #9085 improvements to MatchStrategyFactory and switch order of match parameters, some improvements to TimePeriod matching
Andreas Müller
11:16 PM feature request #9085 (Closed): Improve deduplication of parsed names
Special methods have been implemented during E+M import for improved deduplication (references+authors) of parsed nam... Andreas Müller
09:39 PM Revision 8f2b3bc1 (cdmlib): ref #8785: reuse compatible description when adding specimen to character matrix
Katja Luther
09:38 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> The main issue I originally wanted to test was how the deleting and adding of specimens in...
Katja Luther
06:24 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Did you save before you "reattache"?
Yes, sometimes I even did restart the TaxEditor. Almos...
Andreas Müller
05:33 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Copied from #8754#note-22
>
> There is also another strange behavior. When I do "reattach...
Katja Luther
05:31 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Copied from #8754#note-22
There is also another strange behavior. When I do "reattache" the specimen to the matrix...
Andreas Müller
05:05 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Upps sorry, I have overridden your changes accidentely. But maybe it is better to handle this in another ticket. What... Andreas Müller
05:03 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Maybe we also need a configurator here for the removal of specimens(descriptions) from the matrix. Same issue as at #... Andreas Müller
04:51 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
Katja Luther
10:37 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
I think all issues are fixed, please review. Katja Luther
10:37 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Now, when entering a value at "Specimen Filter" you sometimes get more values then when ente...
Katja Luther
10:35 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Katja Luther wrote:
> > The specimen list is loaded only the first time the dialog is opene...
Katja Luther
10:20 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Generally the layout should be improved. The "Taxon filter" and the "Specimen filter" look v...
Katja Luther
10:18 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> The layout the legend was corrupted by adding the new filter:
>
> ![](picture265-1.png)
...
Katja Luther
09:30 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> The specimen list is loaded only the first time the dialog is opened and added to a cache, the...
Andreas Müller
09:25 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Generally the layout should be improved. The "Taxon filter" and the "Specimen filter" look very different at the mome... Andreas Müller
09:24 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Now, when entering a value at "Specimen Filter" you sometimes get more values then when ente...
Katja Luther
09:20 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Now, when entering a value at "Specimen Filter" you sometimes get more values then when entering no value. This behav... Andreas Müller
09:05 AM bug #8785: Move functionality of buttons to context menu of the character matrix
The new filter should be called "Taxonomic Group" filter or "Taxonomic Subtree" filter as it filters not only on 1 ta... Andreas Müller
09:02 AM bug #8785: Move functionality of buttons to context menu of the character matrix
The layout the legend was corrupted by adding the new filter:
![](picture265-1.png)
Andreas Müller
08:58 AM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Now the nameCaches of the selected taxa are shown on top of the dialog, and a button for remov...
Andreas Müller
09:32 PM Revision 205bdec4 (taxeditor): ref #9084: add config to delete description in character matrix
Katja Luther
07:25 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Katja Luther wrote:
>
> This depends on the rank defined in the descriptive dataset. If you do not define a max ra...
Andreas Müller
06:54 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> I watched another strange behavior about the selected taxon. I created a new DDS in rem_conf...
Katja Luther
06:51 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
I watched another strange behavior about the selected taxon. I created a new DDS in rem_conf_am and added the taxon n... Andreas Müller
05:33 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
I moved #note-22 to #8785 as it belongs to this ticket (I added it accidentely here) Andreas Müller
05:12 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
So back to original issue of this ticket.
The configurator now looks like
![](picture499-1.png)
so the user...
Andreas Müller
04:57 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Katja Luther wrote:
> I could not test it, yet, but maybe this is a problem of synchronisation between the two edito...
Andreas Müller
04:49 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> There is also another strange behavior. When I do "reattache" the specimen to the matrix the...
Katja Luther
04:40 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > now the configuration is available. plea...
Andreas Müller
04:38 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
~~There is also another strange behavior. When I do "reattache" the specimen to the matrix the old record seems to be... Andreas Müller
04:14 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> Katja Luther wrote:
> > now the configuration is available. please review
>
> Something ...
Katja Luther
03:57 PM bug #8754 (Feedback): DescriptionElements are not deleted with the Descriptive Data Set
Katja Luther wrote:
> now the configuration is available. please review
Something still is wrong here. What I did...
Andreas Müller
05:05 PM feature request #9084 (In Progress): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
Andreas Müller
05:03 PM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
copied from #8785, see also #8754#note-20
Maybe we also need a configurator here for the removal of specimens(desc...
Andreas Müller
02:29 PM bug #8593 (Duplicate): Name editor: wrong context menu for synonyms
this is the same problem as in #8959 because in the video demonstration the heterotypic synonym is moved to the homot... Katja Luther
02:19 PM Revision 079cd0bf (taxeditor): set location of login dialog to center of application
Katja Luther
01:28 PM Revision 3617f84b (taxeditor): menu issues character matrix and descriptive dataset editor
Katja Luther
11:50 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Katja Luther wrote:
> Applied in changeset commit:taxeditor|9d01ebe78d471b0203107cc8ebaac5ead4f1b2ee.
this should...
Katja Luther
11:35 AM bug #8959 (Resolved): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Applied in changeset commit:taxeditor|9d01ebe78d471b0203107cc8ebaac5ead4f1b2ee. Katja Luther
11:37 AM Revision 9d01ebe7 (taxeditor): fix #8959: fix correct focus after move syn
Katja Luther
10:39 AM bug #9081 (Closed): Handle empty Partials correctly
the code looks good and the tests work as expected, so we can close this ticket. Katja Luther
12:04 AM bug #9081: Handle empty Partials correctly
should be fixed. Please review. Andreas Müller
10:37 AM Revision 31bb0295 (taxeditor): ref #8785: layout issues
Katja Luther
09:56 AM Revision 5f54eb62 (taxeditor): ref #8785: fix specimen selection for no filter and layout issue
Katja Luther
09:53 AM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
Katja Luther
08:38 AM bug #8849 (Closed): NPE in synonym DetailsViewer for synonyms without accepted taxon
Andreas Müller wrote:
> Good points.
>
> I suggest to split the ticket. The NPE is fixed so this ticket can be cl...
Andreas Müller
08:37 AM bug #9083 (New): Improve authorization handling in synonym details view (and generally)
from #8849#note-7
Generally for permission checks the class CdmUserHelper should be used which provides a couple o...
Andreas Müller
12:31 AM Revision 2953f2bf (cdmlib): fix failing test and cleanup
Andreas Müller
12:29 AM Revision 251dd204 (cdmlib): fix failing test and cleanup
Andreas Müller
12:21 AM Revision f7d4f55f (cdmlib): fix #9081 cleaning up tests using "00000000" (cont. 2)
Andreas Müller
12:19 AM Revision 60e7f76c (cdmlib): fix #9081 cleaning up tests using "00000000" (cont.)
Andreas Müller
12:08 AM task #9082 (In Progress): Update script for old empty Partials handling
Andreas Müller
12:08 AM task #9082 (Closed): Update script for old empty Partials handling
Especially for Person.lifespan_end and Person.lifespan_start the problem existed. See #9081
~~~
UPDATE AgentBase ...
Andreas Müller
12:02 AM Revision 359fd14e (cdmlib): cleanup
Andreas Müller
12:02 AM Revision 4c4faa00 (cdmlib): fix #9081 cleaning up tests using "00000000"
Andreas Müller

06/18/2020

11:54 PM bug #9081 (Resolved): Handle empty Partials correctly
Applied in changeset commit:cdmlib|15f01b88c23a2d398aaa3dda81f0a6954a57da64. Andreas Müller
06:12 PM bug #9081 (Closed): Handle empty Partials correctly
Currently empty partials are stored as "00000000" in the database. This results in a situation where an hql query lik... Andreas Müller
11:54 PM Revision 15f01b88 (cdmlib): fix #9081 fix handling of empty Partial during save and in Person.get/setLifespan
Andreas Müller
10:38 PM feature request #4298: refresh views after changing rights
No it is the user him- or herself. So in this situation some windows might be open and functionality enabled which sh... Andreas Müller
04:28 PM feature request #4298: refresh views after changing rights
The description is not really clear.
Does the user itself changes his rights? Or the administrator?
Katja Luther
03:33 PM feature request #4298: refresh views after changing rights
Andreas Kohlbecker wrote:
> I guess that this ticket has been erroneously assigned to me.
This ticket was created...
Andreas Müller
02:05 PM feature request #4298: refresh views after changing rights
I guess that this ticket has been erroneously assigned to me. Andreas Kohlbecker
05:33 PM bug #8593: Name editor: wrong context menu for synonyms
this is still an open issue Andreas Kohlbecker
03:23 PM bug #8593 (Feedback): Name editor: wrong context menu for synonyms
Can you check if this ticket is still open beside the remaining issue described in #8959 ?
I did not have this pr...
Andreas Müller
05:14 PM bug #9058: Hibernate loggs error when creating schema on MySQL due to failing index creation
> make it possible to activate holdOnError flag in SchemaExport to allow throwing Exceptions if problems occur during... Andreas Kohlbecker
04:53 PM feature request #9078 (In Progress): Handle name parsing and deduplication on server side
There is a problem with effectively deduplicating classes having a timePeriod attribute as empty Partials are sometim... Andreas Müller
04:44 PM Revision 014ff426 (cdmlib): cleanup
Andreas Müller
04:43 PM Revision 0f9d8bd0 (taxeditor): cleanup
Andreas Müller
04:35 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
Thank you, I think we can close this ticket now. Andreas Kohlbecker
04:04 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
I added the relevant tickets Katja Luther
02:02 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
please see the last comment Andreas Kohlbecker
04:33 PM feature request #9034 (Closed): simple agent list page with filter function
Andreas Kohlbecker
04:32 PM Revision 77451b2a (cdm-dataportal): ref #9034 fixing uninitialized variable bugs and completing pager function
Andreas Kohlbecker
04:22 PM Revision 99fab853 (taxeditor): ref #8785: add remove filter button and title containing the selected taxa
Katja Luther
04:20 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Generally this works.
> > >
> > > T...
Katja Luther
01:46 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Andreas Müller wrote:
> > Generally this works.
> >
> > There is 1 open issue which is a b...
Andreas Müller
01:26 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > ... however, the value was stored in the...
Andreas Müller
12:00 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Generally this works.
>
> There is 1 open issue which is a bit critical: it is only possi...
Katja Luther
11:45 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Andreas Müller wrote:
> > ... however, the value was stored in the DB, so maybe the error occ...
Katja Luther
08:55 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> ... however, the value was stored in the DB, so maybe the error occurred during save for AUD...
Katja Luther
08:53 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Kohlbecker wrote:
> "Das Label im Kontextmenü "Add Specimen Descriptions" ist zwar inhaltlich richtig aber "...
Katja Luther
04:10 PM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Katja Luther
04:10 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The new field seems not to be used for...
Katja Luther
01:30 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Katja Luther wrote:
> Andreas Müller wrote:
> > The new field seems not to be used for entering values in the dialo...
Andreas Müller
10:02 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Andreas Müller wrote:
> The new field seems not to be used for entering values in the dialogs for the descriptive ma...
Katja Luther
04:09 PM feature request #9080 (New): Use detailElement of quantitative data in dialog of character matrix
see #9038#note-19 and #9038#note-20 Katja Luther
04:05 PM feature request #3095 (New): protect taxa and nodes
Katja Luther
03:58 PM feature request #8968: filter Bulk editor for created by
createdBy AND updatedBy would be great! Wolf-Henning Kusber
03:56 PM feature request #8968: filter Bulk editor for created by
As the sort function for columns already exists we only need to add the createdBy (and updatedBy?) column. This shoul... Andreas Müller
03:53 PM feature request #8968: filter Bulk editor for created by
A sort function would be fine for administering user's entries by the curator. Wolf-Henning Kusber
03:49 PM feature request #8968: filter Bulk editor for created by
Needs discussion if this should be implemented for the search or for simply filtering the resulting table , see #8181... Andreas Müller
03:44 PM feature request #8181: Further features for bulk editors
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > @Andreas: can you explain what you mean by MarkerType? Should...
Andreas Müller
03:02 PM feature request #8181: Further features for bulk editors
Andreas Müller wrote:
> @Andreas: can you explain what you mean by MarkerType? Should there be a concatenated list o...
Andreas Kohlbecker
03:27 PM feature request #3683 (Closed): add /etc/default/cdmserver to debian package
can be closed Andreas Kohlbecker
03:25 PM bug #8682: cdm-server debian packages configured for jemalloc
Andreas Kohlbecker wrote:
> can be closed if
>
> 1. there are no problems on the test or int server
> 2. all `LD...
Andreas Kohlbecker
03:20 PM feature request #6878 (Closed): choose a base font for the portal and deliver it from the drupal module or theme
works as expected Andreas Kohlbecker
03:19 PM Revision 23c0bb1f (cdm-dataportal): ref #6878 using noto sans also for relationship symbols
Andreas Kohlbecker
01:59 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
I linked a tightly related issue: #8593 Andreas Kohlbecker
01:57 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Katja Luther wrote:
> Andreas K., can you also check if you can reproduce this?
Yes, this is reliably reproducibl...
Andreas Kohlbecker
08:56 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Andreas K., can you also check if you can reproduce this? Katja Luther
01:31 PM feature request #3385: install enable and configure WYSIWYG editors be default
attaching a test feature which has been created from http://edit.test/d7/phycobank/admin/structure/features/create Andreas Kohlbecker
01:21 PM feature request #3385: install enable and configure WYSIWYG editors be default
The [Features](https://www.drupal.org/project/features) apparently has all the functionality needed: "*Features focus... Andreas Kohlbecker
12:18 PM Revision 607296e9 (taxeditor): ref #8785: add button to specimen sel dialog to remove filter
Katja Luther
11:46 AM Revision 1d008f73 (cdmlib): ref #8785: fix sql exception by fixing nullSafeSet
Katja Luther
09:16 AM feature request #9032 (Closed): Implement Feature.availableFor in TaxEditor
Andreas Müller wrote:
> Looks much better now.
>
> I just wonder if it is not maybe better to handle Supports and...
Katja Luther
09:16 AM feature request #9079 (New): Move supported and available for parts of feature detail element to sections
from #9032:
I just wonder if it is not maybe better to handle Supports and Available for also as Sections (they ha...
Katja Luther
09:02 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
now the configuration is available. please review Katja Luther
08:55 AM Revision 2d8bc492 (taxeditor): ref #8785: smaller label issues
Katja Luther
08:55 AM Revision 40425911 (taxeditor): avoid widget is disposed exception when clicking on finish and open
Katja Luther

06/17/2020

07:44 PM Revision ca219b0f (cdm-dataportal): ref #9034 fixing uninitialized variable an other bug
Andreas Kohlbecker
07:12 PM feature request #8181: Further features for bulk editors
Andreas Kohlbecker wrote:
> Just a thought on additinal filter options for bulkeditors in general:
>
> the servic...
Andreas Müller
07:09 PM feature request #8181: Further features for bulk editors
ref type already exists so I kind of remove it from the above list.
As "created by" should be easy to implement so...
Andreas Müller
06:57 PM feature request #8181: Further features for bulk editors
Just a thought on additinal filter options for bulkeditors in general:
the service method `IdentifiableDaoBase.fin...
Andreas Kohlbecker
07:09 PM feature request #9022 (Closed): Implement lifespan for Person Details View
works as expected, ticket can be closed Andreas Kohlbecker
07:08 PM bug #9056: Entering a year in timeperiod element recalculates the dimension of the textfields in strange way
I can't reproduce this on KDE Neon 5.19.0 Andreas Kohlbecker
06:12 PM Revision aac8a307 (taxeditor): using correct message for failed developer login attempt
Andreas Kohlbecker
05:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix
"Das Label im Kontextmenü "Add Specimen Descriptions" ist zwar inhaltlich richtig aber "Add Specimens" wäre intuitive... Andreas Kohlbecker
05:36 PM bug #9013 (Closed): Problems in TaxonNode Dialog
I can no longer reproduce these errors - closing this as fixed. Andreas Kohlbecker
05:29 PM bug #8849: NPE in synonym DetailsViewer for synonyms without accepted taxon
Good points.
I suggest to split the ticket. The NPE is fixed so this ticket can be closed.
The improved handling ...
Andreas Müller
04:42 PM bug #8849 (Feedback): NPE in synonym DetailsViewer for synonyms without accepted taxon
Generally for permission checks the class `CdmUserHelper` should be used which provides a couple of methods like `use... Andreas Kohlbecker
05:25 PM bug #8816 (Worksforme): NoSuchElementException during adding Specimens to Matrix Editor
also can't reproduce this issue Andreas Kohlbecker
01:55 PM feature request #9025 (Closed): allow for creating a new schema in empty dbs via the remote login dialog
Andreas Müller
12:56 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
> The "Create Schema" must not be triggered by hitting the enter key in the password or username fields
Is also fi...
Andreas Kohlbecker
12:45 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
The color issue is fixed, now. Please can someone check the look on windows? Andreas Kohlbecker
12:37 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The Points 1 - 4 from above are fixed.
> >
> > Two remaini...
Andreas Kohlbecker
12:35 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
Andreas Kohlbecker wrote:
> The Points 1 - 4 from above are fixed.
>
> Two remaining issues:
>
> * The connect...
Andreas Müller
12:25 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
The Points 1 - 4 from above are fixed.
Two remaining issues:
* The connect button however looks a bit strange b...
Andreas Kohlbecker
12:55 PM Revision aa175a7a (taxeditor): ref #9025 password field does not trigger connect button when action is schmea create
Andreas Kohlbecker
12:42 PM Revision ec99dd06 (taxeditor): ref #9025 fixing button color issue
Andreas Kohlbecker
12:26 PM Revision 08a36bdf (taxeditor): ref #8754: adapt deleteHandling to configuration
Katja Luther
12:22 PM Revision e423ad05 (cdmlib): ref #8754: add deleteConfig for descriptiveDataset
Katja Luther
09:35 AM Revision 3f6dbb50 (taxeditor): fix problems with Nomenclatural code preference
Katja Luther
08:43 AM bug #8901 (Resolved): Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
Andreas Müller wrote:
> Andreas Müller wrote:
> > Is this fixed and should be reviewed?
>
> ??
sorry, yes.
Katja Luther
01:38 AM Revision b6a90c36 (taxeditor): ref #9078, ref #8857 adapt TaxEditor to extended CreateTaxonDTO
Andreas Müller
01:37 AM Revision ce9a92e4 (taxeditor): cleanup
Andreas Müller
01:21 AM Revision 7d1593b0 (cdmlib): ref #9078 , ref #8857 use server side parsing in TaxonNodeServiceImpl.createNewTaxonNode
Andreas Müller
01:20 AM Revision 72eb424b (cdmlib): ref #9078 first server side implementation for parsing and deduplication of names
Andreas Müller
01:19 AM Revision f3544285 (cdmlib): cleanup and remove deprecated JOIN type method
Andreas Müller
01:16 AM feature request #9078 (Closed): Handle name parsing and deduplication on server side
this is blocking #8857
requires:
* improvement of match strategies for parsed names (MatchStrategyFactory): #9...
Andreas Müller
12:24 AM Revision fee89c0b (taxeditor): cleanup
Andreas Müller
12:22 AM Revision ba4b5517 (cdmlib): cleanup
Andreas Müller

06/16/2020

09:37 PM Revision df5baf41 (cdmlib): cleanup
Andreas Müller
09:06 PM bug #8901: Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
Andreas Müller wrote:
> Is this fixed and should be reviewed?
??
Andreas Müller
09:00 PM Revision f2c39369 (taxeditor): cleanup
Andreas Müller
09:00 PM Revision 8c2d9190 (taxeditor): i18n for TaxonNodeDetailElement
Andreas Müller
07:43 PM bug #9077 (New): Handle "Show details" in context menu of name editor differently
Currently the context menu's last entry is "Show details". This does not make sense as we also have the "Open in ..."... Andreas Müller
07:28 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Andreas Müller wrote:
> The problem still exists if you directly click on the moved synonym. If you click on another...
Andreas Müller
07:25 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Andreas K., can you also check if you can reproduce this? Andreas Müller
07:24 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
What I did in rem_conf_am:
* Open taxon "Test" in classification "Testklass"
* Move heterotypic synonym Hetero sy...
Andreas Müller
07:15 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Strange, the problem still exists for me:
![](picture836-1.png)
Andreas Müller
11:52 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Katja Luther wrote:
> I tried an hour ago, but the test server was not available.
I can't reproduce it with the n...
Katja Luther
11:38 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Now the test server is up again. Can you please try again? Andreas Müller
11:16 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
I tried an hour ago, but the test server was not available. Katja Luther
11:14 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Did you try again? If not please pass the ticket back to me and I will try again. Andreas Müller
06:22 PM bug #9024 (New): repeated startups of the managed server eats up harddisk space
In windows it is configurable but by default automatic cleaning of the temp file is switched off. If switched on it c... Andreas Müller
05:36 PM bug #9076 (Closed): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
the test portal looks ok now Andreas Kohlbecker
05:31 PM bug #9076 (Resolved): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
Applied in changeset commit:cdm-dataportal|aec9ca7defa215bd9d28320a526751741baac1ce. Andreas Kohlbecker
05:30 PM bug #9076 (In Progress): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
Andreas Kohlbecker
05:30 PM bug #9076 (Closed): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
When the setting for 'Synonymy as tab' and 'Tabbed taxon page' (config/cdm_dataportal/settings/layout/taxon) are off ... Andreas Kohlbecker
05:31 PM Revision aec9ca7d (cdm-dataportal): fix #9076 fixing missing synonymie div
Andreas Kohlbecker
04:56 PM feature request #9034: simple agent list page with filter function
[Henning wrote]
Gefällt mir sehr gut!!
Vielen Dank und viele Grüße,
Henning
Andreas Kohlbecker
04:21 PM feature request #9034 (Resolved): simple agent list page with filter function
Done! Ich fand es übersichtlicher und ruhiger nach den Namensdetails eine Zeilenschaltung einzuschieben. Andreas Kohlbecker
04:14 PM feature request #9034: simple agent list page with filter function
Hallo Andreas,

vielen Dank für Deine Mail und Deinen Vorschlag. Einerseits finde ich Deinen Vorschlag gut wei...
Andreas Kohlbecker
04:32 PM Revision acd4e30a (cdmlib): ref #8785 add supportsOriginalSourceType to AggregationSourceMode
Andreas Müller
04:31 PM Revision d46ac3ea (cdmlib): Rename label for "from child to parent" AggregationMode
Andreas Müller
04:16 PM Revision 5ae6e6d1 (cdm-dataportal): ref #9034 new agent item layout
Andreas Kohlbecker
03:55 PM bug #8785: Move functionality of buttons to context menu of the character matrix
... however, the value was stored in the DB, so maybe the error occurred during save for AUD data. Andreas Müller
03:51 PM bug #8785: Move functionality of buttons to context menu of the character matrix
When changing a value (1 out of 3 exact values) I got an exception during save:
~~~
last remote method : http://t...
Andreas Müller
03:29 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
Generally this works.
There is 1 open issue which is a bit critical: it is only possible to a specimen for a taxon...
Andreas Müller
03:50 PM bug #9075 (New): Exact values in descriptive matrix label provider should be ordered
Currently they appear in non-deterministic order.
I think the best appropriate order is to order them by value, st...
Andreas Müller
03:35 PM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
The new field seems not to be used for entering values in the dialogs for the descriptive matrix. But this is the mai... Andreas Müller
09:44 AM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
looks good. Katja Luther
03:14 PM Revision 46cc150c (taxeditor): ref #9004 rename parent child relation source to placement source in TaxEditor
Andreas Müller
03:06 PM Revision 181a2054 (taxeditor): cleanup
Andreas Müller
02:55 PM bug #9016 (Closed): Adding specimen without field unit fails
This works.
A related ticket that the protected titleCache of an orphaned derived unit is handled in #9074
Andreas Müller
02:53 PM bug #9074 (New): Specimen missing a collector + n° and missing a collection identifier (Barcode, Accession number) not identifiable in descriptive Matrix
e.g. linking a Specimen without fieldunit which has only information in the DerivedUnit.titleCache shows "no informat... Andreas Müller
02:48 PM bug #9073 (Worksforme): Configuring the matrix view throws HTTP invoker exception
I tried to open the view configuration for the descriptive matrix
![](picture700-1.png)
and got the following e...
Andreas Müller
02:14 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
I don't exactly remember the situation out of which I wrote this tickt, but from my current point of view the solutio... Andreas Kohlbecker
11:17 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> Andreas Müller wrote:
> > Generally I have problems to understand this ticket.
> >
> > D...
Katja Luther
11:16 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> Generally I have problems to understand this ticket.
>
> Do I understand it correctly tha...
Andreas Müller
01:46 PM Revision 75b9ff9a (cdm-server): upading cdm-server launchers
Andreas Kohlbecker
01:45 PM feature request #7820 (Rejected): Add cron job for deleting cdmserver log files after a specified time period
no longer needed as we are using the RollingFileAppender of lockback which deletes logs older than 30 days or if the ... Andreas Kohlbecker
01:42 PM feature request #7821 (Duplicate): Use log4j2 for cdmserver logging to avoid having a separate cron job for deleting log files
closing as duplicate of #7085 Andreas Kohlbecker
01:41 PM bug #7085 (Closed): cdmserver logfiles getting too big, use RollingFileAppender
implemented and tested locally, on edit-test and edit-int. Andreas Kohlbecker
01:39 PM bug #8682: cdm-server debian packages configured for jemalloc
can be closed if
1. there are no problems on the test or int server
2. all `LD_PRELOAD=/usr/lib/x86_64-linux-gnu/...
Andreas Kohlbecker
11:53 AM bug #8682: cdm-server debian packages configured for jemalloc
mainly solved!
Remaining task: adapt cdm-server documentation
After the release all `LD_PRELOAD=/usr/lib/x86_64...
Andreas Kohlbecker
11:50 AM bug #8682 (Resolved): cdm-server debian packages configured for jemalloc
Applied in changeset commit:cdm-server|bc3050782e9cc090105f1ea63d005d471c8c48f1. Andreas Kohlbecker
01:37 PM feature request #3683: add /etc/default/cdmserver to debian package
done. Ticket can be closed when there are no problems on the test and int server. Andreas Kohlbecker
01:36 PM feature request #3683 (Resolved): add /etc/default/cdmserver to debian package
Applied in changeset commit:cdm-server|2fb99eb9e93faf8769f8ea22cadb12caea3c30b1. Andreas Kohlbecker
01:35 PM Revision 2fb99eb9 (cdm-server): fix #3683 adding /etc/default/cdmserver to deb package also cleaning up & improving
Andreas Kohlbecker
11:50 AM Revision bc305078 (cdm-server): fix #8682 adding libjemalloc as package dependency and setting LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libjemalloc.so.1 in init script
Andreas Kohlbecker
11:35 AM bug #7189: Taxeditor connect dialog high-dpi suport
I tested with 100%, 125%, 150% and 175% on a windows machine Andreas Müller
11:34 AM bug #7189 (Closed): Taxeditor connect dialog high-dpi suport
This is generally fixed. Only issue is that the recalculation of the layout sometimes stocks in the middle while data... Andreas Müller
11:30 AM feature request #9072 (New): Layout issues temporal data details view
from #8990:
Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead having a ...
Katja Luther
11:29 AM feature request #8990 (Closed): Implement flowering periods (temporal facts) in TaxEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > There was still an NPE in the DescriptionHelper. I tried to fix t...
Katja Luther
11:22 AM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
Andreas Müller wrote:
> Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead...
Andreas Müller
11:21 AM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
An improved formatter is handled in #9071 Andreas Müller
11:18 AM feature request #8990 (Feedback): Implement flowering periods (temporal facts) in TaxEditor
Andreas Müller wrote:
> There was still an NPE in the DescriptionHelper. I tried to fix this in f266536e
This wor...
Andreas Müller
11:20 AM feature request #9071 (Closed): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
copied from #8990 Andreas Müller
11:06 AM feature request #9032 (Feedback): Implement Feature.availableFor in TaxEditor
Looks much better now.
I just wonder if it is not maybe better to handle Supports and Available for also as Sectio...
Andreas Müller
09:37 AM feature request #9032: Implement Feature.availableFor in TaxEditor
the layout issues are solved. Katja Luther
09:35 AM feature request #9032 (Resolved): Implement Feature.availableFor in TaxEditor
Applied in changeset commit:taxeditor|45f8176560c646e39fb6244aa33a38160a4adea9. Katja Luther
10:55 AM Revision 54f6c4ab (cdmlib): cleanup
Andreas Müller
10:55 AM Revision 130d32fa (cdmlib): ref #9004 fix transient behavior for TaxonNode.reference and TaxonNode.microReference
Andreas Müller
10:27 AM Revision fac73107 (cdm-server): ignoring compressed log files
Andreas Kohlbecker
10:26 AM Revision 07e58903 (cdm-server): solving 'No org.apache.tomcat.InstanceManager set in ServletContext' problem
Andreas Kohlbecker
09:53 AM Revision 83cb55ca (taxeditor): ref #9032: label can set to bold
Katja Luther
09:37 AM Revision 45f81765 (taxeditor): fix #9032: layout issues in feature details view
Katja Luther
09:23 AM Revision cfddafff (taxeditor): ref #8990 fix NPE in getTemporalDataText (cont.)
Andreas Müller
09:19 AM Revision ac21d2ee (cdm-server): reverting resilient handling of invalid options
Andreas Kohlbecker
 

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