Activity
From 06/04/2020 to 07/03/2020
07/03/2020
- 04:18 PM bug #8310 (In Progress): Issues to solve in E+M shapefile
- 04:15 PM feature request #2489 (Resolved): strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- 04:09 PM feature request #2489: strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- to review:
1. wait until the shapefile is available in the geoserver
2. test manually if the order of polygons w... - 04:08 PM feature request #2489: strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- the merged shapefile has been created an is available at https://github.com/cybertaxonomy/tdwg-area-shapefiles
- 04:14 PM feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- I passed this issue to you since I am assuming that the mapping is defined per default for the terms.
I this is no... - 04:13 PM feature request #9122 (Feedback): update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4
- The csv export of the attribute tables is found at https://github.com/cybertaxonomy/tdwg-area-shapefiles/blob/master/...
- 09:12 AM feature request #9071: Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- This should be fixed now. Please review.
- 09:11 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- Applied in changeset commit:cdmlib|2327c7599e20695ff913cf4289a70e0788ef9599.
- 08:52 AM feature request #9101 (Closed): Add feature "Fruiting Period"
- Missing abbreviation is handled in #9121
- 08:51 AM feature request #9121 (Closed): Add abbreviations to Feature
- Currently the term loading for features does not allow abbreviations.
But these are needed e.g. for Flowering peri... - 08:43 AM feature request #8991 (Closed): Add feature "Flowering Period"
- Update script ticket for missing supportsTemporalData on test systems created: #9120
- 08:42 AM task #9120 (Closed): Update script for flowering period supports temporal data
- according to #8991#note-5 some flowering periods on test systems do not yet have the supportsTemporalData flag set. T...
- 08:38 AM bug #9115 (Closed): NPE in reference bulk editor
07/02/2020
- 01:17 PM bug #8310: Issues to solve in E+M shapefile
- shapefiles can be downloaded from http://download.geofabrik.de/europe.html
- 11:58 AM bug #9099 (Resolved): placemark icon in kml map not clickable
- Applied in changeset commit:cdm-dataportal|720f43681d5eefdc33bd09644d7a0f2efd58c622.
- 10:47 AM task #9119 (Resolved): Remove schema create and schema update functionality from datsource view
- please review
- 10:25 AM task #9119 (Closed): Remove schema create and schema update functionality from datsource view
- As now schema creation and schema update can be done via taxeditor-webapp (#9025), too, we do not need it anymore the...
- 09:50 AM feature request #9118 (Resolved): Change p2 update site to https in Taxeditor
- I think we can test this with the nightly builds
- 09:45 AM feature request #9118 (Closed): Change p2 update site to https in Taxeditor
- 09:00 AM feature request #9009 (Closed): Add structure to store media metadata
- The type level java doc regarding auditing was not up to date. I changed this and the ticket can be closed.
- 08:44 AM feature request #8134 (Closed): Implement verbatim type information in dataportal
- Andreas Kohlbecker wrote:
>
> So there is one last bit to do here:
>
> * show textual type information in regis... - 08:43 AM feature request #9117 (New): show textual type information in registration page
- last remaining task copied from #8134
- 08:39 AM feature request #9010 (Closed): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- Andreas Müller wrote:
> Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded ... - 08:38 AM bug #9058 (Closed): Hibernate loggs error when creating schema on MySQL due to failing index creation
- yes in deed!
- 08:37 AM bug #8682 (Closed): cdm-server debian packages configured for jemalloc
- `LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libjemalloc.so.1` removed from all servers
07/01/2020
- 03:06 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
- Note2: In the TaxEditor most elements implementing such single source refer to ReferencedEntityBase/IReferencedEntity...
- 02:58 PM feature request #9116: Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
- Note: At the moment nomenclatural reference is not really a source yet but nom ref and nom source exist in parallel. ...
- 01:05 PM feature request #9116 (Closed): Adapt Editor to switch to originalSource for TaxonNode and improve layout of TaxonNode dialogue
- e.g TaxonName.nomenclaturalSource and TaxonName.source. For a complete list of all such places see #6581
Nomenclat... - 01:21 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> Katja Luther wrote:
> > For terms we have to have a deeper look because inspecting the vola... - 12:16 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Katja Luther wrote:
> For terms we have to have a deeper look because inspecting the volatileCache shows a lot of te... - 12:15 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Katja Luther wrote:
> Another thing I recognized, when entering a nomenclatural reference in the freetext editor for... - 11:57 AM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- 11:57 AM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- For terms we have to have a deeper look because inspecting the volatileCache shows a lot of terms of type UNKNOWN.
... - 09:31 AM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> > > Please decide who wants to revie... - 11:15 AM feature request #9071 (Feedback): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- 11:12 AM feature request #9071: Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- when deleting the end year (and no month and day was entered) a second "-" respectively a m-dash appears in the forma...
- 09:53 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- 09:47 AM feature request #9071 (Feedback): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
06/30/2020
- 10:15 PM bug #9115 (Resolved): NPE in reference bulk editor
- please review
- 10:14 PM bug #9115 (Closed): NPE in reference bulk editor
- Hallo
im Bulk Editor – ich habe eine Ref. gelöscht, anschl. nicht gespeichert, die nächste gelöscht (nach OK für Spe... - 05:06 PM feature request #6429 (Worksforme): Reconstruct Admin Preferences
- yes this is implemented a long time ago.
- 04:05 PM feature request #6429: Reconstruct Admin Preferences
- Can you check this?
- 04:53 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Please decide who wants to review this ticket.
> >
> > By ... - 04:26 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> Please decide who wants to review this ticket.
>
> By the way: I adapted the session insp... - 03:14 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Please decide who wants to review this ticket.
By the way: I adapted the session inspection dialog in TaxEditor in... - 03:11 PM bug #7709 (Resolved): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- This should be fixed now. The transient entity cacher handles now both transient and volatile objects via the same UI...
- 04:25 PM feature request #9111 (Closed): Handle Malformed URIs
- This works well. I created a new ticket for moving the code to cdmlib: #9114
- 03:42 PM feature request #9111 (Resolved): Handle Malformed URIs
- please review.
- 03:41 PM feature request #9111: Handle Malformed URIs
- We already have the UrlUtf8Coder in cdmlib.commons
- 03:40 PM feature request #9111: Handle Malformed URIs
- suggestion of AK:
ich halte es schon für richtig, generell URIs zu verwenden, sollten aber nicht erlaubte Zeichen ... - 03:39 PM feature request #9111 (Rejected): Handle Malformed URIs
- mail WB:
ich habe hier wieder so eine URL die ich nicht als URI abspeichern kann:
https://bioone.org/journals/Cac... - 04:23 PM feature request #9114 (Closed): Handle malformed URIs in user type
- The fix for #9111 should be moved to a new URI user type wrapper that is used instead of the current URI class. Other...
- 04:19 PM bug #9112 (Closed): Widget is disposed when closing factual data view
- Don't know if this is easy to reproduce. But I did not get an exception when closing the facts view.
- 03:46 PM bug #9112 (Resolved): Widget is disposed when closing factual data view
- please review or close the ticket.
- 03:45 PM bug #9112 (Closed): Widget is disposed when closing factual data view
- mail WB:
Hallo, nach dem Schließen des Fact-views nach Eingabe einer Citation beim Speichern des Taxons. Der neue ... - 04:18 PM bug #6276 (Closed): Nomenclatural references show parsed date string instead of publication year
- from what I've seen during the last days, this seems to be solved completely.
- 04:18 PM bug #9113 (Closed): NPE when deleting classification
- This is fixed.
- 03:50 PM bug #9113 (Resolved): NPE when deleting classification
- please review
- 03:48 PM bug #9113 (Closed): NPE when deleting classification
- mail AM:
Hallo,
Beim Löschen einer Classification habe ich den Fehler unten bekommen. Im Code unten wurde wohl ... - 04:14 PM feature request #8585 (Closed): Factual Data View: new DesctiptionElements shoud be selected immediately
- This works very well know. Nice new workflow improvement.
- 04:11 PM bug #9097 (Closed): specimen coordinate links in maps to geohack service broken
- works as expected
- 04:04 PM bug #9102 (Closed): taxonNode status icon breaks sort order in taxontree
- 04:01 PM bug #9095 (Closed): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- 03:46 PM bug #9095 (Resolved): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- 12:25 PM bug #9095 (In Progress): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- the last commit:a8905b5d also causes Problems since `TeamAutoInitializer` needs to distinguish Team and Person to avo...
- 03:36 PM feature request #9078 (Closed): Handle name parsing and deduplication on server side
- Tested:
Authors, the author is correctly deduplicated for persons with same abbrevTitle, also if the already exist... - 03:02 PM feature request #9078: Handle name parsing and deduplication on server side
- This should work now. Can you please review.
- 03:28 PM bug #5710 (In Progress): Changing the database connection must reset all caches
- 01:12 PM feature request #9110 (Feedback): Add additional informations to metadata table of cdmLight
- For the usage of cdmLight in GfBio we need some more information in the metaData table:
* creationDate
* Base URL... - 12:05 PM bug #9109 (Closed): Search button font icon broken
- ![](picture229-1.png)
even if https://www.phycobank.org/sites/phycobank/modules/cdm_dataportal/fonts/fontawesome-f... - 11:33 AM bug #8167 (Resolved): Permission denied for Submitter when adding section to newly created journal
- bitte testen
- 11:16 AM EDIT Platform Etablierung task #9108 (Closed): Prepare Kurs Borsch
- Voraussichtlich soll der Kurs von Thomas Borsch wieder stattfinden.
Rechtzeitige Vorbereitung ist wichtig.
**Astr... - 11:09 AM task #9106 (New): Quick person entry via identifier (ORCID, IPNI, ...) for phycobank
- The data entry for persons could be simplified by a mechanism which fetches the details from an authority after entry...
- 10:41 AM task #9105 (Closed): rename NodeSortMode etc to TaxonNodeSortMode
- die Enums NodeSortMode und NodeDtoSortMode sind etwas zu allgemein bennant. Besser: TaxonNodeSortMode und
TaxonNodeD...
06/29/2020
- 02:03 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
- Katja Luther wrote:
> Andreas Müller wrote:
> > I am sure there is a duplicate ticket for this already. Can you ple... - 01:25 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
- Andreas Müller wrote:
> I am sure there is a duplicate ticket for this already. Can you please check.
I only foun... - 01:24 PM feature request #8585 (Resolved): Factual Data View: new DesctiptionElements shoud be selected immediately
- this is fixed. Please review.
- 12:57 AM feature request #9078 (Resolved): Handle name parsing and deduplication on server side
- Applied in changeset commit:taxeditor|b6f9eb474c27f732c7f2cdc0d0fd5a6a5e45d174.
06/27/2020
- 06:33 PM bug #9070: Adapt preference page to feature.isAvailableFor...
- Looks like this was fixed during 5.15 already. Should we move it back?
- 11:54 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- An ExtendedTimePeriodFormatter exists now. Details might be improved in future.
I implemented formatters for all 3 T... - 09:06 AM bug #6276 (Resolved): Nomenclatural references show parsed date string instead of publication year
- This should be fixed now.
06/26/2020
- 10:25 PM feature request #9104 (New): NaturalLanguageTerm
- Add NaturalLanguageTerm to the loaded terms. Currently it is loaded on the fly (which creates overhead in TaxEditor a...
- 06:48 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- By the way, there is already a UUID based cacher in cdmlib-services (eu.etaxonomy.cdm.api.cache.CdmCacher)
- 05:44 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- To me it is not clear anymore, why the CdmTransientEntityCacher should handle only transient but not volatile objects...
- 03:52 PM bug #9102 (Resolved): taxonNode status icon breaks sort order in taxontree
- 03:32 PM bug #9103 (Feedback): missing exception handling in TaxoNodeDto
- 03:32 PM bug #9103: missing exception handling in TaxoNodeDto
- @Katja: has far as I could see, this stems from you, was there any urgent reason for this?
- 03:31 PM bug #9103 (Closed): missing exception handling in TaxoNodeDto
- see
~~~java
try{
TaxonNode parent = taxonNode.getParent();
parentUUID = parent... - 11:20 AM feature request #3097 (Worksforme): disable editors if a user has insufficient grants for a taxon or taxon node.
- Andreas Müller wrote:
> I am not sure if I understand what is meant here with "enabled".
> Currently it seems possi... - 10:08 AM bug #9092 (Closed): Multiple Representation Exception when editing factual data
- The problems were caused by a missing modelCache update, this is done and it works as expected.
- 12:58 AM bug #6276 (In Progress): Nomenclatural references show parsed date string instead of publication year
06/25/2020
- 07:03 PM feature request #9101: Add feature "Fruiting Period"
- Applied in changeset commit:cdmlib|33ab47c40c8cc58e91294096f72d770f71d398b8.
- 06:54 PM feature request #9101 (Resolved): Add feature "Fruiting Period"
- 06:23 PM feature request #9101 (Closed): Add feature "Fruiting Period"
- similar to flowering period #8991
- 06:50 PM feature request #8991: Add feature "Flowering Period"
- Applied in changeset commit:cdmlib|25e3014d375dbc2951b2ff2053a1925e2c5a8a47.
- 06:42 PM feature request #8991: Add feature "Flowering Period"
- Andreas Müller wrote:
> Still need to check if supportsTemporalData is autoamtically created on production (on test ... - 06:47 PM bug #9092: Multiple Representation Exception when editing factual data
- As the problems comes with source and referenceForParentChildRelation I tried to revert the changes for the reference...
- 12:47 PM bug #9092: Multiple Representation Exception when editing factual data
- deeper debugging results that the multiple representation does not come from the sec reference but from the descripti...
- 06:29 PM bug #9102 (Closed): taxonNode status icon breaks sort order in taxontree
- for example in the cihorieae portal *Incertae sedis* and *Nomina excludenda* should come as last in the tree:
![](... - 06:22 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- moreover the whole reference object as serialized in webservice responses can be simplified a lot. The `authorship` ...
- 05:57 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- the cause for this bug was not related to #7331 but is caused by an unexpected behavior of ` AdvancedBeanInitializer....
- 01:08 PM bug #9095 (Resolved): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- solved by catching the exception in the `TeamOrPersonBaseBeanProcessor` since a real solution (#7331) may need some m...
- 12:13 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- this problem is potentially highly related to #7331 since the init strategy includes the `sources.citation.authorshi...
- 11:59 AM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- it apends at `DistributionInfoDTO.tree.children.children.children.data.sources.citation.authorship.nomenclaturalTitle...
- 08:36 AM bug #9095 (Closed): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
- test links:
* https://europlusmed.org/cdm_dataportal/taxon/7c8012f2-bbda-4e51-83cd-39a06994098c
* http://cichorie... - 06:15 PM feature request #9100 (New): Improve temporal facts data model
- AM (an WGB):
ich [bin im Cubaportal] auf die Phenology-Daten gestolpert.
Z.B. http://portal.cybertaxonomy.org/... - 01:06 PM bug #9096 (Duplicate): LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon()
- 01:05 PM bug #9096: LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon()
- duplicate of #9095
- 08:44 AM bug #9096 (Duplicate): LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionElementsForTaxon()
test link https://europlusmed.org/cdm_dataportal/taxon/7c8012f2-bbda-4e51-83cd-39a06994098c
~~~
08:42:18.346 ...- 12:16 PM task #7330: TitleAndNameCacheAutoInitializer misses out References
- potentially a duplicate of #7331 - needs to be checked, though!!!
- 11:38 AM bug #9099 (Closed): placemark icon in kml map not clickable
- as long the error radius diameter exceeds the placemark icon the icon can not be clicked
http://test.e-taxonomy.e... - 11:35 AM bug #9097: specimen coordinate links in maps to geohack service broken
- example link for testing http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/ec22a1f9-9fd5-4cc...
- 11:32 AM bug #9097 (Resolved): specimen coordinate links in maps to geohack service broken
- Applied in changeset commit:cdmlib|00a1503b7cf1c77079368394dfcc3375c6d733f9.
- 11:23 AM bug #9097 (In Progress): specimen coordinate links in maps to geohack service broken
- 09:05 AM bug #9097 (Closed): specimen coordinate links in maps to geohack service broken
- the service api has changed, links should now be like
https://geohack.toolforge.org/geohack.php?language=en¶ms...
06/24/2020
- 09:53 PM bug #9092: Multiple Representation Exception when editing factual data
- Katja Luther wrote:
> mail Sophia:
>
> hab gerade noch festgestellt, dass der Fehler nur bei Arten kommt, bei G... - 09:38 PM bug #9092: Multiple Representation Exception when editing factual data
- Now I could reproduce the exception and it was again the sec reference of the taxon.
The steps to reproduce are:
... - 09:29 PM bug #9092: Multiple Representation Exception when editing factual data
- mail Sophia:
Generell übertrage ich halt im Moment immer von der Druckversion der Flora Cuba die Daten. Also norma... - 02:51 PM bug #9092: Multiple Representation Exception when editing factual data
- In this case the reference which has multiple representations was [Reference [type=WebPage, title=The Spermatophyta o...
- 10:56 AM bug #9092: Multiple Representation Exception when editing factual data
- mail Sophia:
es passiert sowohl wenn ich nur eine Sache eingegeben habe als auch wenn es mehrere waren, normalerwe... - 06:59 AM bug #9092 (Closed): Multiple Representation Exception when editing factual data
- Hallo liebes Edit Team,
seit dem Update bekomme ich diese Fehlermeldung super häufig wenn ich bei den Factual Data i... - 03:45 PM task #9094 (Closed): Update script to update TaxonNode.source from IdentifiableSource to DescriptionElementSource
- This is only required on test servers which have been updated during development of 5.15. Most DBs have already been ...
- 12:24 PM bug #9093 (New): Exception after deleting two references
- mail WB:
Hallo
im Bulk Editor – ich habe eine Ref. gelöscht, anschl. nicht gespeichert, die nächste gelöscht (nac... - 10:56 AM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded and unplaced taxa should ...
- 06:58 AM feature request #7580: User wishes: CharacterMatrix
- these issues are not solved yet.
- 06:56 AM task #8130: Check if related feature data is cleared when supported facts type is changed
- we need to decide how to handle this.
06/23/2020
- 04:20 PM feature request #8134 (Resolved): Implement verbatim type information in dataportal
- 04:19 PM feature request #8165: enable logback jmx for cdm-server
- we switched to logback for the cdm-server
- 03:16 PM feature request #9064 (Closed): Add ExternalLinks to IdentifiableEntities
- 03:15 PM feature request #9090: Implement external links for identifiable entities in TaxEditor
- Once this is implemented for references we may further discuss #7984
- 03:08 PM feature request #9090 (New): Implement external links for identifiable entities in TaxEditor
- This is most important for references.
Minimum implementation should be in supplemental data view.
But at least f... - 03:13 PM feature request #9091 (New): Show external links for identifiable entites in dataportal
- Most important for references
- 03:02 PM feature request #9043 (Closed): Add feature "Altitude"
- 03:01 PM task #9037 (Closed): Remove old Feature.supportedXXX columns
- 03:01 PM task #9036 (Closed): Remove old TaxonNode.unplaced/doubtful/excluded columns
- 03:00 PM feature request #9004 (Closed): Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
- 02:18 PM bug #9055 (Feedback): Relabel "Type Designation" to "Type Information"
- Needs final discussion
- 01:43 PM task #9017 (Resolved): Update image link for FoG Willing images
06/22/2020
- 11:25 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Hmm, this behavior definitely needs further discussion. I do not remember that we had decided to implement it this wa...
- 10:57 PM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- However, it was somehow difficult to test this ticket as the behavior was not always reproducable. One time selecting...
- 10:28 PM feature request #9084: Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- Katja Luther wrote:
> Did you try this with different descriptions?
> I never got this exception, maybe you remove... - 09:41 PM feature request #9084: Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- Did you try this with different descriptions?
I never got this exception, maybe you removed the descriptionElementS... - 08:08 PM feature request #9084 (Feedback): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- When I tried to delete a description from matrix without deleting from specimen I got the following exception:
~~~... - 08:02 PM feature request #9089 (New): Show descriptive datasets in description details view
- Currently it is necessary to open the referencing objects view to know if a description is part of a descriptive data...
- 06:29 PM bug #9088 (Closed): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
~~~
last remote method : http://localhost:8080/remoting/name.service
last remote request client time : 2020-06-22...- 06:25 PM feature request #8134: Implement verbatim type information in dataportal
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > TextualTypeDesignation are not supposed to contain validly pu... - 05:04 PM feature request #8134: Implement verbatim type information in dataportal
- Andreas Kohlbecker wrote:
> TextualTypeDesignation are not supposed to contain validly published type designations, ... - 04:45 PM feature request #8134: Implement verbatim type information in dataportal
- TextualTypeDesignation are not supposed to contain validly published type designations, therefore it makes no sense t...
- 01:48 PM feature request #8134: Implement verbatim type information in dataportal
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The textual type designation are now at least shown in the ta... - 06:18 PM bug #9087 (Closed): typedesignation/{uuid}/annotations must return pager objects
- see commit:cdm-dataportal|45b496bc -> cdm_api.module which fixes the problem for #8134
Test page `reference_int/cd... - 04:55 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- The source can be edited via the taxon node wizard ("placement source") but only reference (and if a new node is crea...
- 01:15 PM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- display of status notes, source and annotations is implemented.
Is there any way to edit source and annotations ... - 04:24 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> Andreas Müller wrote:
> > There is also another strange behavior. When I do "reattache" the s... - 10:00 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
06/20/2020
- 10:56 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Now add and delete should work. But if a specimen contains more than one description that could be used for cloning, ...
- 09:23 AM bug #8959 (Closed): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Now it seems to work as expected
- 08:47 AM bug #9058 (Feedback): Hibernate loggs error when creating schema on MySQL due to failing index creation
- I copied the exception handling to a new ticket #9086.
I think the real issue of this ticket (exceptions are throw... - 08:45 AM feature request #9086 (New): Throw exception during schema generation if an exception occurrs
- copied from #9058
for a detailed description see there.
Different solutions exist by either finding a way to ru... - 08:37 AM bug #8857 (Closed): NonUniqueObjectException when creating new taxon
- That was because #9078 was set as blocker.
- 07:50 AM bug #8857: NonUniqueObjectException when creating new taxon
- I can't close the ticket because the closed status is not available
- 07:49 AM bug #8857: NonUniqueObjectException when creating new taxon
- tested it with a author and reference already in database and it works like expected.
- 08:35 AM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- this is done.
- 08:34 AM feature request #9085 (In Progress): Improve deduplication of parsed names
- 12:57 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> So back to original issue of this ticket.
>
> The configurator now looks like
>
> ![]...
06/19/2020
- 11:35 PM bug #8857 (Resolved): NonUniqueObjectException when creating new taxon
- With the changes for #9078 this is fixed now. Katja can you please again check and close the ticket if it works
- 11:16 PM feature request #9085 (Closed): Improve deduplication of parsed names
- Special methods have been implemented during E+M import for improved deduplication (references+authors) of parsed nam...
- 09:38 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> The main issue I originally wanted to test was how the deleting and adding of specimens in... - 06:24 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Did you save before you "reattache"?
Yes, sometimes I even did restart the TaxEditor. Almos... - 05:33 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Copied from #8754#note-22
>
> There is also another strange behavior. When I do "reattach... - 05:31 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Copied from #8754#note-22
There is also another strange behavior. When I do "reattache" the specimen to the matrix... - 05:05 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Upps sorry, I have overridden your changes accidentely. But maybe it is better to handle this in another ticket. What...
- 05:03 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Maybe we also need a configurator here for the removal of specimens(descriptions) from the matrix. Same issue as at #...
- 04:51 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- 10:37 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- I think all issues are fixed, please review.
- 10:37 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Now, when entering a value at "Specimen Filter" you sometimes get more values then when ente... - 10:35 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Katja Luther wrote:
> > The specimen list is loaded only the first time the dialog is opene... - 10:20 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Generally the layout should be improved. The "Taxon filter" and the "Specimen filter" look v... - 10:18 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> The layout the legend was corrupted by adding the new filter:
>
> ![](picture265-1.png)
... - 09:30 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> The specimen list is loaded only the first time the dialog is opened and added to a cache, the... - 09:25 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Generally the layout should be improved. The "Taxon filter" and the "Specimen filter" look very different at the mome...
- 09:24 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Now, when entering a value at "Specimen Filter" you sometimes get more values then when ente... - 09:20 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Now, when entering a value at "Specimen Filter" you sometimes get more values then when entering no value. This behav...
- 09:05 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- The new filter should be called "Taxonomic Group" filter or "Taxonomic Subtree" filter as it filters not only on 1 ta...
- 09:02 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- The layout the legend was corrupted by adding the new filter:
![](picture265-1.png) - 08:58 AM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Now the nameCaches of the selected taxa are shown on top of the dialog, and a button for remov... - 07:25 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
>
> This depends on the rank defined in the descriptive dataset. If you do not define a max ra... - 06:54 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> I watched another strange behavior about the selected taxon. I created a new DDS in rem_conf... - 06:51 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- I watched another strange behavior about the selected taxon. I created a new DDS in rem_conf_am and added the taxon n...
- 05:33 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- I moved #note-22 to #8785 as it belongs to this ticket (I added it accidentely here)
- 05:12 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- So back to original issue of this ticket.
The configurator now looks like
![](picture499-1.png)
so the user... - 04:57 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> I could not test it, yet, but maybe this is a problem of synchronisation between the two edito... - 04:49 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> There is also another strange behavior. When I do "reattache" the specimen to the matrix the... - 04:40 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > now the configuration is available. plea... - 04:38 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- ~~There is also another strange behavior. When I do "reattache" the specimen to the matrix the old record seems to be...
- 04:14 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> Katja Luther wrote:
> > now the configuration is available. please review
>
> Something ... - 03:57 PM bug #8754 (Feedback): DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> now the configuration is available. please review
Something still is wrong here. What I did... - 05:05 PM feature request #9084 (In Progress): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- 05:03 PM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- copied from #8785, see also #8754#note-20
Maybe we also need a configurator here for the removal of specimens(desc... - 02:29 PM bug #8593 (Duplicate): Name editor: wrong context menu for synonyms
- this is the same problem as in #8959 because in the video demonstration the heterotypic synonym is moved to the homot...
- 11:50 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Katja Luther wrote:
> Applied in changeset commit:taxeditor|9d01ebe78d471b0203107cc8ebaac5ead4f1b2ee.
this should... - 11:35 AM bug #8959 (Resolved): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Applied in changeset commit:taxeditor|9d01ebe78d471b0203107cc8ebaac5ead4f1b2ee.
- 10:39 AM bug #9081 (Closed): Handle empty Partials correctly
- the code looks good and the tests work as expected, so we can close this ticket.
- 12:04 AM bug #9081: Handle empty Partials correctly
- should be fixed. Please review.
- 09:53 AM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
- 08:38 AM bug #8849 (Closed): NPE in synonym DetailsViewer for synonyms without accepted taxon
- Andreas Müller wrote:
> Good points.
>
> I suggest to split the ticket. The NPE is fixed so this ticket can be cl... - 08:37 AM bug #9083 (New): Improve authorization handling in synonym details view (and generally)
- from #8849#note-7
Generally for permission checks the class CdmUserHelper should be used which provides a couple o... - 12:08 AM task #9082 (In Progress): Update script for old empty Partials handling
- 12:08 AM task #9082 (Closed): Update script for old empty Partials handling
- Especially for Person.lifespan_end and Person.lifespan_start the problem existed. See #9081
~~~
UPDATE AgentBase ...
06/18/2020
- 11:54 PM bug #9081 (Resolved): Handle empty Partials correctly
- Applied in changeset commit:cdmlib|15f01b88c23a2d398aaa3dda81f0a6954a57da64.
- 06:12 PM bug #9081 (Closed): Handle empty Partials correctly
- Currently empty partials are stored as "00000000" in the database. This results in a situation where an hql query lik...
- 10:38 PM feature request #4298: refresh views after changing rights
- No it is the user him- or herself. So in this situation some windows might be open and functionality enabled which sh...
- 04:28 PM feature request #4298: refresh views after changing rights
- The description is not really clear.
Does the user itself changes his rights? Or the administrator? - 03:33 PM feature request #4298: refresh views after changing rights
- Andreas Kohlbecker wrote:
> I guess that this ticket has been erroneously assigned to me.
This ticket was created... - 02:05 PM feature request #4298: refresh views after changing rights
- I guess that this ticket has been erroneously assigned to me.
- 05:33 PM bug #8593: Name editor: wrong context menu for synonyms
- this is still an open issue
- 03:23 PM bug #8593 (Feedback): Name editor: wrong context menu for synonyms
- Can you check if this ticket is still open beside the remaining issue described in #8959 ?
I did not have this pr... - 05:14 PM bug #9058: Hibernate loggs error when creating schema on MySQL due to failing index creation
- > make it possible to activate holdOnError flag in SchemaExport to allow throwing Exceptions if problems occur during...
- 04:53 PM feature request #9078 (In Progress): Handle name parsing and deduplication on server side
- There is a problem with effectively deduplicating classes having a timePeriod attribute as empty Partials are sometim...
- 04:35 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- Thank you, I think we can close this ticket now.
- 04:04 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- I added the relevant tickets
- 02:02 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- please see the last comment
- 04:33 PM feature request #9034 (Closed): simple agent list page with filter function
- 04:20 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Generally this works.
> > >
> > > T... - 01:46 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > Generally this works.
> >
> > There is 1 open issue which is a b... - 01:26 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > ... however, the value was stored in the... - 12:00 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Generally this works.
>
> There is 1 open issue which is a bit critical: it is only possi... - 11:45 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > ... however, the value was stored in the DB, so maybe the error occ... - 08:55 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> ... however, the value was stored in the DB, so maybe the error occurred during save for AUD... - 08:53 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Kohlbecker wrote:
> "Das Label im Kontextmenü "Add Specimen Descriptions" ist zwar inhaltlich richtig aber "... - 04:10 PM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- 04:10 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The new field seems not to be used for... - 01:30 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Katja Luther wrote:
> Andreas Müller wrote:
> > The new field seems not to be used for entering values in the dialo... - 10:02 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Andreas Müller wrote:
> The new field seems not to be used for entering values in the dialogs for the descriptive ma... - 04:09 PM feature request #9080 (New): Use detailElement of quantitative data in dialog of character matrix
- see #9038#note-19 and #9038#note-20
- 04:05 PM feature request #3095 (New): protect taxa and nodes
- 03:58 PM feature request #8968: filter Bulk editor for created by
- createdBy AND updatedBy would be great!
- 03:56 PM feature request #8968: filter Bulk editor for created by
- As the sort function for columns already exists we only need to add the createdBy (and updatedBy?) column. This shoul...
- 03:53 PM feature request #8968: filter Bulk editor for created by
- A sort function would be fine for administering user's entries by the curator.
- 03:49 PM feature request #8968: filter Bulk editor for created by
- Needs discussion if this should be implemented for the search or for simply filtering the resulting table , see #8181...
- 03:44 PM feature request #8181: Further features for bulk editors
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > @Andreas: can you explain what you mean by MarkerType? Should... - 03:02 PM feature request #8181: Further features for bulk editors
- Andreas Müller wrote:
> @Andreas: can you explain what you mean by MarkerType? Should there be a concatenated list o... - 03:27 PM feature request #3683 (Closed): add /etc/default/cdmserver to debian package
- can be closed
- 03:25 PM bug #8682: cdm-server debian packages configured for jemalloc
- Andreas Kohlbecker wrote:
> can be closed if
>
> 1. there are no problems on the test or int server
> 2. all `LD... - 03:20 PM feature request #6878 (Closed): choose a base font for the portal and deliver it from the drupal module or theme
- works as expected
- 01:59 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- I linked a tightly related issue: #8593
- 01:57 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Katja Luther wrote:
> Andreas K., can you also check if you can reproduce this?
Yes, this is reliably reproducibl... - 08:56 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Andreas K., can you also check if you can reproduce this?
- 01:31 PM feature request #3385: install enable and configure WYSIWYG editors be default
- attaching a test feature which has been created from http://edit.test/d7/phycobank/admin/structure/features/create
- 01:21 PM feature request #3385: install enable and configure WYSIWYG editors be default
- The [Features](https://www.drupal.org/project/features) apparently has all the functionality needed: "*Features focus...
- 09:16 AM feature request #9032 (Closed): Implement Feature.availableFor in TaxEditor
- Andreas Müller wrote:
> Looks much better now.
>
> I just wonder if it is not maybe better to handle Supports and... - 09:16 AM feature request #9079 (New): Move supported and available for parts of feature detail element to sections
- from #9032:
I just wonder if it is not maybe better to handle Supports and Available for also as Sections (they ha... - 09:02 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- now the configuration is available. please review
06/17/2020
- 07:12 PM feature request #8181: Further features for bulk editors
- Andreas Kohlbecker wrote:
> Just a thought on additinal filter options for bulkeditors in general:
>
> the servic... - 07:09 PM feature request #8181: Further features for bulk editors
- ref type already exists so I kind of remove it from the above list.
As "created by" should be easy to implement so... - 06:57 PM feature request #8181: Further features for bulk editors
- Just a thought on additinal filter options for bulkeditors in general:
the service method `IdentifiableDaoBase.fin... - 07:09 PM feature request #9022 (Closed): Implement lifespan for Person Details View
- works as expected, ticket can be closed
- 07:08 PM bug #9056: Entering a year in timeperiod element recalculates the dimension of the textfields in strange way
- I can't reproduce this on KDE Neon 5.19.0
- 05:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- "Das Label im Kontextmenü "Add Specimen Descriptions" ist zwar inhaltlich richtig aber "Add Specimens" wäre intuitive...
- 05:36 PM bug #9013 (Closed): Problems in TaxonNode Dialog
- I can no longer reproduce these errors - closing this as fixed.
- 05:29 PM bug #8849: NPE in synonym DetailsViewer for synonyms without accepted taxon
- Good points.
I suggest to split the ticket. The NPE is fixed so this ticket can be closed.
The improved handling ... - 04:42 PM bug #8849 (Feedback): NPE in synonym DetailsViewer for synonyms without accepted taxon
- Generally for permission checks the class `CdmUserHelper` should be used which provides a couple of methods like `use...
- 05:25 PM bug #8816 (Worksforme): NoSuchElementException during adding Specimens to Matrix Editor
- also can't reproduce this issue
- 01:55 PM feature request #9025 (Closed): allow for creating a new schema in empty dbs via the remote login dialog
- 12:56 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- > The "Create Schema" must not be triggered by hitting the enter key in the password or username fields
Is also fi... - 12:45 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- The color issue is fixed, now. Please can someone check the look on windows?
- 12:37 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The Points 1 - 4 from above are fixed.
> >
> > Two remaini... - 12:35 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- Andreas Kohlbecker wrote:
> The Points 1 - 4 from above are fixed.
>
> Two remaining issues:
>
> * The connect... - 12:25 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- The Points 1 - 4 from above are fixed.
Two remaining issues:
* The connect button however looks a bit strange b... - 08:43 AM bug #8901 (Resolved): Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Is this fixed and should be reviewed?
>
> ??
sorry, yes. - 01:16 AM feature request #9078 (Closed): Handle name parsing and deduplication on server side
- this is blocking #8857
requires:
* improvement of match strategies for parsed names (MatchStrategyFactory): #9...
06/16/2020
- 09:06 PM bug #8901: Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
- Andreas Müller wrote:
> Is this fixed and should be reviewed?
?? - 07:43 PM bug #9077 (New): Handle "Show details" in context menu of name editor differently
- Currently the context menu's last entry is "Show details". This does not make sense as we also have the "Open in ..."...
- 07:28 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Andreas Müller wrote:
> The problem still exists if you directly click on the moved synonym. If you click on another... - 07:25 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Andreas K., can you also check if you can reproduce this?
- 07:24 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- What I did in rem_conf_am:
* Open taxon "Test" in classification "Testklass"
* Move heterotypic synonym Hetero sy... - 07:15 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Strange, the problem still exists for me:
![](picture836-1.png) - 11:52 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Katja Luther wrote:
> I tried an hour ago, but the test server was not available.
I can't reproduce it with the n... - 11:38 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Now the test server is up again. Can you please try again?
- 11:16 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- I tried an hour ago, but the test server was not available.
- 11:14 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Did you try again? If not please pass the ticket back to me and I will try again.
- 06:22 PM bug #9024 (New): repeated startups of the managed server eats up harddisk space
- In windows it is configurable but by default automatic cleaning of the temp file is switched off. If switched on it c...
- 05:36 PM bug #9076 (Closed): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
- the test portal looks ok now
- 05:31 PM bug #9076 (Resolved): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
- Applied in changeset commit:cdm-dataportal|aec9ca7defa215bd9d28320a526751741baac1ce.
- 05:30 PM bug #9076 (In Progress): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
- 05:30 PM bug #9076 (Closed): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
- When the setting for 'Synonymy as tab' and 'Tabbed taxon page' (config/cdm_dataportal/settings/layout/taxon) are off ...
- 04:56 PM feature request #9034: simple agent list page with filter function
- [Henning wrote]
Gefällt mir sehr gut!!
Vielen Dank und viele Grüße,
Henning - 04:21 PM feature request #9034 (Resolved): simple agent list page with filter function
- Done! Ich fand es übersichtlicher und ruhiger nach den Namensdetails eine Zeilenschaltung einzuschieben.
- 04:14 PM feature request #9034: simple agent list page with filter function
- Hallo Andreas,
vielen Dank für Deine Mail und Deinen Vorschlag. Einerseits finde ich Deinen Vorschlag gut wei... - 03:55 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- ... however, the value was stored in the DB, so maybe the error occurred during save for AUD data.
- 03:51 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- When changing a value (1 out of 3 exact values) I got an exception during save:
~~~
last remote method : http://t... - 03:29 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
- Generally this works.
There is 1 open issue which is a bit critical: it is only possible to a specimen for a taxon... - 03:50 PM bug #9075 (New): Exact values in descriptive matrix label provider should be ordered
- Currently they appear in non-deterministic order.
I think the best appropriate order is to order them by value, st... - 03:35 PM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- The new field seems not to be used for entering values in the dialogs for the descriptive matrix. But this is the mai...
- 09:44 AM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- looks good.
- 02:55 PM bug #9016 (Closed): Adding specimen without field unit fails
- This works.
A related ticket that the protected titleCache of an orphaned derived unit is handled in #9074 - 02:53 PM bug #9074 (New): Specimen missing a collector + n° and missing a collection identifier (Barcode, Accession number) not identifiable in descriptive Matrix
- e.g. linking a Specimen without fieldunit which has only information in the DerivedUnit.titleCache shows "no informat...
- 02:48 PM bug #9073 (Worksforme): Configuring the matrix view throws HTTP invoker exception
- I tried to open the view configuration for the descriptive matrix
![](picture700-1.png)
and got the following e... - 02:14 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- I don't exactly remember the situation out of which I wrote this tickt, but from my current point of view the solutio...
- 11:17 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Generally I have problems to understand this ticket.
> >
> > D... - 11:16 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> Generally I have problems to understand this ticket.
>
> Do I understand it correctly tha... - 01:45 PM feature request #7820 (Rejected): Add cron job for deleting cdmserver log files after a specified time period
- no longer needed as we are using the RollingFileAppender of lockback which deletes logs older than 30 days or if the ...
- 01:42 PM feature request #7821 (Duplicate): Use log4j2 for cdmserver logging to avoid having a separate cron job for deleting log files
- closing as duplicate of #7085
- 01:41 PM bug #7085 (Closed): cdmserver logfiles getting too big, use RollingFileAppender
- implemented and tested locally, on edit-test and edit-int.
- 01:39 PM bug #8682: cdm-server debian packages configured for jemalloc
- can be closed if
1. there are no problems on the test or int server
2. all `LD_PRELOAD=/usr/lib/x86_64-linux-gnu/... - 11:53 AM bug #8682: cdm-server debian packages configured for jemalloc
- mainly solved!
Remaining task: adapt cdm-server documentation
After the release all `LD_PRELOAD=/usr/lib/x86_64... - 11:50 AM bug #8682 (Resolved): cdm-server debian packages configured for jemalloc
- Applied in changeset commit:cdm-server|bc3050782e9cc090105f1ea63d005d471c8c48f1.
- 01:37 PM feature request #3683: add /etc/default/cdmserver to debian package
- done. Ticket can be closed when there are no problems on the test and int server.
- 01:36 PM feature request #3683 (Resolved): add /etc/default/cdmserver to debian package
- Applied in changeset commit:cdm-server|2fb99eb9e93faf8769f8ea22cadb12caea3c30b1.
- 11:35 AM bug #7189: Taxeditor connect dialog high-dpi suport
- I tested with 100%, 125%, 150% and 175% on a windows machine
- 11:34 AM bug #7189 (Closed): Taxeditor connect dialog high-dpi suport
- This is generally fixed. Only issue is that the recalculation of the layout sometimes stocks in the middle while data...
- 11:30 AM feature request #9072 (New): Layout issues temporal data details view
- from #8990:
Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead having a ... - 11:29 AM feature request #8990 (Closed): Implement flowering periods (temporal facts) in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > There was still an NPE in the DescriptionHelper. I tried to fix t... - 11:22 AM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
- Andreas Müller wrote:
> Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead... - 11:21 AM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
- An improved formatter is handled in #9071
- 11:18 AM feature request #8990 (Feedback): Implement flowering periods (temporal facts) in TaxEditor
- Andreas Müller wrote:
> There was still an NPE in the DescriptionHelper. I tried to fix this in f266536e
This wor... - 11:20 AM feature request #9071 (Closed): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- copied from #8990
- 11:06 AM feature request #9032 (Feedback): Implement Feature.availableFor in TaxEditor
- Looks much better now.
I just wonder if it is not maybe better to handle Supports and Available for also as Sectio... - 09:37 AM feature request #9032: Implement Feature.availableFor in TaxEditor
- the layout issues are solved.
- 09:35 AM feature request #9032 (Resolved): Implement Feature.availableFor in TaxEditor
- Applied in changeset commit:taxeditor|45f8176560c646e39fb6244aa33a38160a4adea9.
06/15/2020
- 10:05 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- Minor note: can we move Categorical Data up just below Supports Text Data? This is because features for Categorical D...
- 10:03 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- A minor issue for the layout of the term details view
We should maybe better distinguish the supportsXXX and avail... - 09:55 PM feature request #9032 (Feedback): Implement Feature.availableFor in TaxEditor
- 09:55 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- Generally it seems to work.
One issue I found:
* I changed "Orthography to be available for Taxon, not Taxon na... - 06:02 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- Katja Luther wrote:
> No, I just found a problem.
the problem is fixed, please review.
- 06:01 PM feature request #9032 (Resolved): Implement Feature.availableFor in TaxEditor
- 12:48 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- No, I just found a problem.
- 12:12 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- Is this ticket for review then?
- 11:02 AM feature request #9032: Implement Feature.availableFor in TaxEditor
- Katja Luther wrote:
> the details view and the featureTree creation is implemented, but the preference page needs to... - 09:42 PM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
- Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead having a theses labels a...
- 09:35 PM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
- There was still an NPE in the DescriptionHelper. I tried to fix this in f266536e
- 10:58 AM feature request #8990 (Resolved): Implement flowering periods (temporal facts) in TaxEditor
- a first implementation is available, please review.
- 09:10 PM feature request #9066 (Closed): Make visiblity of Specimen List Editor menu configurable
- Works as expected
- 06:05 PM feature request #9066 (Resolved): Make visiblity of Specimen List Editor menu configurable
- Applied in changeset commit:cdmlib|c3c33fc8596c94035a7d944b6d3dd70b982ea20a.
- 09:07 PM feature request #8958 (Closed): Add publication year, inReference (journal), and URI to reference bulk editor
- now everything looks fine
- 07:56 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
- 07:56 PM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
- Andreas Müller wrote:
> Great, this is looks (IMO).
>
> There is only a minor open issue: if subreference has no ... - 07:56 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
- Applied in changeset commit:taxeditor|7cff439d088ab830363cff21695e0c8b7305d494.
- 09:04 PM feature request #9033 (Closed): Adapt TaxEditor to new TaxonNode.status
- Works as expected
- 07:50 PM feature request #9033: Adapt TaxEditor to new TaxonNode.status
- Andreas Müller wrote:
> Now I got an NPE when switching from status to no status
>
the NPE is fixed, please review. - 07:50 PM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
- Applied in changeset commit:taxeditor|eb5c6646d625eb63d4031b226ae2cd99fa7dda48.
- 08:57 PM feature request #9009: Add structure to store media metadata
- Please review
- 08:54 PM bug #9059 (Closed): Cancel taxon save does not clean the (factual data) cache
- Seems to work now
- 06:06 PM bug #9059 (Resolved): Cancel taxon save does not clean the (factual data) cache
- Andreas Müller wrote:
> I got an NPE when testing this ticket together with #9038
>
the NPE is fixed. - 08:40 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Can you please review my changes and if ok close the ticket?
- 08:39 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- I did some further adaptations. Some were incorrect but now I think it should work as expected (max pre-decimal numbe...
- 07:41 PM feature request #8128 (Duplicate): Add indicator for feature facts and/or vocabularies which description type they support
- This ticket duplicates #9027
- 07:27 PM feature request #9040 (New): Implement open button for ORCIDs
- 05:57 PM feature request #9040 (Resolved): Implement open button for ORCIDs
- 06:01 PM bug #9070 (Resolved): Adapt preference page to feature.isAvailableFor...
- this is fixed, please review.
- 11:01 AM bug #9070 (Closed): Adapt preference page to feature.isAvailableFor...
- The preference pages for facts base on vocabularies but should base on the flags isAvailableForTaxon/-TaxonName/-Occu...
- 04:04 PM feature request #9067: [DISCUSS] Allow media to support external links not being files
- WGB:
als Diskussionsbeitrag der Hinweis, dass wir in der Darstellung im Portal grundsätzlich die Unterscheidung ei... - 09:02 AM feature request #9067: [DISCUSS] Allow media to support external links not being files
- I actually see no benefit of the "solutions" 2 - 4 over 1.
Adding additional fields for external links is nothing ... - 12:09 PM bug #5601: Creation of local database structure via remoting
- Don't know if this is a better title. The database is not necessarily a **local** one. It only needs to be reachable,...
- 10:22 AM bug #5601 (Duplicate): Creation of local database structure via remoting
- So I close this ticket as duplicate. If you have an idea for a better ticket title feel free to change it.
- 10:02 AM bug #5601: Creation of local database structure via remoting
- Andreas Müller wrote:
> As the description says "can be created automatically in the same way **as it was possible i... - 11:43 AM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- I forgot to mention that also the TaxonNode source should be shown here
- 09:31 AM feature request #9010 (In Progress): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- thank you for pointing this out. I overlooked the additional requirement to show also status notes.
- 09:11 AM bug #9024: repeated startups of the managed server eats up harddisk space
- in linux systems the tmp folder is cleared during the system start up, which is a very wise strategy. In Mac OS is is...
06/13/2020
- 11:40 AM feature request #9004: Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
- Open orphanRemoval issue moved to #9069
- 11:35 AM feature request #9004: Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
- Rename the ticket as the primary change was the change to use OriginalSource (test implementation for #6581)
- 11:38 AM bug #9069 (New): Remove orphan single sources
- In some classes only a single source is referenced (e.g. classes implementing SingleSourcedEntityBase or TaxonName.no...
- 01:08 AM bug #9024 (Feedback): repeated startups of the managed server eats up harddisk space
- is it really critical if data is extracted into the tmp folder? Older data in this folder should be automatically del...
06/12/2020
- 10:42 PM feature request #8990 (In Progress): Implement flowering periods (temporal facts) in TaxEditor
- 08:23 PM feature request #9004 (Resolved): Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
- Applied in changeset commit:cdmlib|1f1f7ea103177a09f739fe1808def0261f1ea424.
- 05:18 PM bug #9059 (Feedback): Cancel taxon save does not clean the (factual data) cache
- 05:18 PM bug #9059: Cancel taxon save does not clean the (factual data) cache
- I got an NPE when testing this ticket together with #9038
~~~
last remote method : http://localhost:50405/remotin... - 05:15 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Numbers with >9 digits before the decimal sign are still allowed. I adapted the regex accordingly.
Also incorrect ... - 04:38 PM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
- Great, this is looks (IMO).
There is only a minor open issue: if subreference has no date data and the inreference... - 03:38 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- now, the string representation is added if the year differs from the string representation of the publication date.
- 03:36 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
- Applied in changeset commit:taxeditor|20c5d67db28aeffddf4445a67d74c7e9d1aea10c.
- 04:24 PM bug #9063 (Closed): Detailsview for MediaSpecimen broken
- works as expected
- 04:22 PM feature request #9068 (New): Parser for ExtendedTimePeriods
- e.g. for phenology data like (Apr)-May-July-(Aug) or (4)-5-7-(8)
- 04:08 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
- Now I got an NPE when switching from status to no status
~~~
last remote method : http://localhost:49511/remoting... - 04:03 PM feature request #9066 (Feedback): Make visiblity of Specimen List Editor menu configurable
- This works as expected. Only I think the default value should maybe be "enabled". This is more according to our defau...
- 12:31 PM feature request #9066: Make visiblity of Specimen List Editor menu configurable
- this should be fixed. please review.
- 12:29 PM feature request #9066 (Resolved): Make visiblity of Specimen List Editor menu configurable
- Applied in changeset commit:taxeditor|a0257f6e93d6a598489c23c4d84868253e4cb82e.
- 11:21 AM feature request #9066 (Closed): Make visiblity of Specimen List Editor menu configurable
- As we do have the Specimen Tree Editor now the Specimen List Editor is not really needed anymore. Therefore it may ma...
- 03:52 PM bug #9060 (Closed): NPE in termsearch
- works as expected
- 03:41 PM feature request #9064 (Resolved): Add ExternalLinks to IdentifiableEntities
- 01:03 AM feature request #9064 (Closed): Add ExternalLinks to IdentifiableEntities
- 02:10 PM feature request #9067 (In Progress): [DISCUSS] Allow media to support external links not being files
- 02:10 PM feature request #9067: [DISCUSS] Allow media to support external links not being files
- I preliminary added an attribute link (ExternalLink) to Media class to be able to immediately support solutions 3 or ...
- 01:57 PM feature request #9067 (Closed): [DISCUSS] Allow media to support external links not being files
- The current handling of media expects that links stored in Media(RepresentationPart) are media files or can be opened...
- 01:16 PM feature request #9031 (Closed): Adapt CdmLightExport to new TaxonNode.status
- checked the cdmlight result and the doubtful flag is correctly set.
- 12:41 PM feature request #9031 (Resolved): Adapt CdmLightExport to new TaxonNode.status
- 12:40 PM feature request #9031 (New): Adapt CdmLightExport to new TaxonNode.status
- Andreas Müller wrote:
> WGB:
>
> um die Kompatibilität zu gewährleisten, wäre mir hier die zusätzliche Einfühurun... - 12:40 PM feature request #9031 (Resolved): Adapt CdmLightExport to new TaxonNode.status
- Applied in changeset commit:cdmlib|38adedb9c022a407c44338aa1798051015b46321.
- 11:18 AM feature request #9065 (Closed): Add derived unit media to DerivedUnitFacade details view
- For the workflow of adding typification or any other specimen data to a taxon/name it is often necessary to add also ...
- 09:21 AM feature request #9032 (In Progress): Implement Feature.availableFor in TaxEditor
- the details view and the featureTree creation is implemented, but the preference page needs to be adapted, because th...
- 08:58 AM bug #9016: Adding specimen without field unit fails
- Andreas Müller wrote:
> so I guess we can put it to resolved?
yes, please review - 08:43 AM bug #9016 (Resolved): Adding specimen without field unit fails
- so I guess we can put it to resolved?
- 08:47 AM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- On the above test page I could not find any example with status **notes**. Is this implemented already? If yes, is th...
06/11/2020
- 11:02 PM bug #9016: Adding specimen without field unit fails
- This is fixed. For example for Aporocactus flagelliformis (L.) Lem. in caryophyllales_spp there are two specimen with...
- 05:10 PM bug #5601: Creation of local database structure via remoting
- As the description says "can be created automatically in the same way **as it was possible in standalone**" .
And " ... - 05:02 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- difficult to say. Maybe we can put the result of toString in brackets behind the year, if and only if the result diff...
- 12:34 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- so I would keep it like it is?
- 12:33 PM bug #8806 (Worksforme): Multiple representations problem on saving Desriptive Data Set
- this seems to be fixed with one of the other fixes in character matrix and descriptive dataset editor
- 12:29 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Is this ticket ready for review or are there open issues (beside the known PK-Generation iss... - 12:27 PM bug #9029 (Closed): Adapt character matrix to using dtos instead of whole cdm entities
- this is fixed.
- 12:04 PM bug #9063: Detailsview for MediaSpecimen broken
- please review.
- 12:00 PM bug #9063 (Resolved): Detailsview for MediaSpecimen broken
- Applied in changeset commit:taxeditor|c198e9650016b7456fc0d12d3cdda3f1526cb7c0.
- 11:59 AM bug #9063 (Closed): Detailsview for MediaSpecimen broken
- The detailsview for MediaSpecimen are broken.
- 12:03 PM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
- now the notes are removed, but remembered till the wizard is closed and the taxon node saved. please review.
06/10/2020
- 05:38 PM feature request #9009 (Resolved): Add structure to store media metadata
- Applied in changeset commit:cdmlib|72032e8369286b8e52207a4ed1ed0443e416b72a.
- 02:57 PM feature request #9009 (In Progress): Add structure to store media metadata
- 04:46 PM task #9062 (Closed): Remove StatisticalMeasurementValue.value_old
- To finalize #8978
- 01:49 PM task #9037 (Resolved): Remove old Feature.supportedXXX columns
- 01:49 PM task #9036 (Resolved): Remove old TaxonNode.unplaced/doubtful/excluded columns
- 01:15 PM bug #9061 (New): Create analyze framework for CDM Excel imports
- This framework should allow to analyze import data before running the import.
This should include
* analyzeWork... - 12:54 PM bug #5710 (Feedback): Changing the database connection must reset all caches
- This is not yet fixed as we watched in the past multiple times that switching between instances created serious probl...
- 12:02 PM feature request #9038 (Resolved): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- now the entered text is checked by a regular expression, please review.
- 01:35 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Please be aware of #9059 when testing this
- 01:20 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Another open issue:
if the scale or the precision is not according to the possible precisions/scales the data is n... - 01:07 AM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Katja Luther wrote:
> now the incorrect state is not cleared, but the value is not stored. I had a look how it is ha... - 11:59 AM bug #9060: NPE in termsearch
- this should be fixed, please review
- 11:58 AM bug #9060 (Resolved): NPE in termsearch
- Applied in changeset commit:taxeditor|74c3df2a4568e1e35a994b99443381d24b32f0ea.
- 11:56 AM bug #9060 (Closed): NPE in termsearch
- In term search throws NPE:
~~~ text
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/rem... - 10:17 AM task #6021 (Rejected): Add 'mention' functionality
- 09:56 AM task #6008: Fix broken UTF-8 characters
- This is still an open issue and should be fixed
- 09:55 AM bug #6007 (Worksforme): Redmine: Wiki tables are not correctly mapped to new syntax
- many tables have been fixed manually, so there is no more need for general action on this topic.
The above linked... - 09:40 AM bug #5601 (Feedback): Creation of local database structure via remoting
- Andreas Müller wrote:
> This is probably fixed with #9025 . Still need to test if it really works with H2.
So thi... - 12:40 AM bug #5601: Creation of local database structure via remoting
- This is probably fixed with #9025 . Still need to test if it really works with H2.
- 09:29 AM bug #9059: Cancel taxon save does not clean the (factual data) cache
- this should be fixed, please review.
- 09:28 AM bug #9059 (Resolved): Cancel taxon save does not clean the (factual data) cache
- Applied in changeset commit:taxeditor|be22ce7df518ffa44a2ac886d8b4f84fd4497227.
- 01:34 AM bug #9059 (Closed): Cancel taxon save does not clean the (factual data) cache
- What I did:
* open a taxon in name editor
* change an existing fact
* close name editor without saving
* reopen... - 08:37 AM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- mail WB:
Hello,
my use cases for display of the publication year right now are
(i) the selection of nom. referen... - 01:44 AM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
- Generally this works now. I only wonder if it is really wanted to only show the year. In case of a freetext date noth...
- 01:38 AM bug #8903 (Closed): Remember expansion state in factual data view
- works now
06/09/2020
- 11:54 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
- Now existing notes are not deleted if the status is set to null. This is the typical problem that you may not want to...
- 10:15 AM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
- Andreas Müller wrote:
> This is mostly fixed. 2 remaining issues:
>
> * rename label "status" to "placement stat... - 11:35 PM bug #9058 (Resolved): Hibernate loggs error when creating schema on MySQL due to failing index creation
- 04:20 PM bug #9058: Hibernate loggs error when creating schema on MySQL due to failing index creation
- Some further links:
* https://stackoverflow.com/questions/46156953/how-to-resolve-specified-key-was-too-long-max-... - 03:59 PM bug #9058 (In Progress): Hibernate loggs error when creating schema on MySQL due to failing index creation
- Strange is that on some systems this is only logged as warning while others do throw an exception. I did not yet find...
- 11:34 AM bug #9058 (Closed): Hibernate loggs error when creating schema on MySQL due to failing index creation
- Errors are like:
~~~
ERROR [main][or.hi.to.hb.SchemaExport:484] - HHH000389: Unsuccessful: create index agentTitl... - 10:38 PM feature request #8464: Make AuthorityBases unique
- In #9058 a very similar problem was solved. For doing the same thing for this index (which is a unique index not a si...
- 10:24 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- Yes, the refactoring was not fully ready. Can you please try again if the above problems still appear?
- 05:10 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- another problem:
4) Taxeditor SNAPSHOT version: Open connect dialog, The dialog initially tries to connect the **d... - 03:55 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- reviewing your changes I found the following issues:
1) In case of an empty DB the following notification is shown... - 06:21 PM bug #4300 (Worksforme): Authority form does not work under Windows
- Operation Checkboxes in the Authority Form do now work in windows 10.
I have no idea how and when this was fixed, ... - 06:02 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- from the diagrams it really looks like this problem is fixed. Can you please link the `rowWrappers`-Ticket with this ...
- 05:55 PM bug #9020 (Closed): add default role Allow_for_all_taxa (TAXONNODE.[CREATE,READ,UPDATE,DELETE])
- The new PermissionGroup has been created in all old databases on edit-int, so this issue is fully solved.
- 04:56 PM bug #7189 (Resolved): Taxeditor connect dialog high-dpi suport
- I consider this as fixed, please review.
- 03:24 PM bug #7189: Taxeditor connect dialog high-dpi suport
- I think we just should remove all this programmatic setting of font sizes as they are centrally managed via the setti...
- 03:16 PM bug #7189: Taxeditor connect dialog high-dpi suport
- Im code ist mir aufgefallen dass Cherian die Ubuntu Fontfamilie verwendet. ich nehme an um die Schriftgröße setzen zu...
- 11:14 AM bug #7189: Taxeditor connect dialog high-dpi suport
- Andreas Kohlbecker wrote:
> this issue is mainly fixed. Only the width of the comboboxes is a bit too wide.
>
> *... - 04:12 PM bug #8662 (Closed): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
- Andreas Müller wrote:
> If the tree list is empty it works now as expected.
>
> >Auch wenn Taxa existieren, wird ... - 03:02 PM feature request #9023 (Closed): option to start cdm webapp with hibernate.hbm2ddl.auto = create
- this works now as expected
- 03:00 PM bug #8994 (Closed): universal image viewer fails loading libs when clean urls is disabled
- tested on the test server and no problems found.
- 02:55 PM feature request #9034: simple agent list page with filter function
- Suggestion for a more compact layout:
~~~
Li, Y. [Yang Li] , fl. 2018 (Family name: Li, Given name: Yang) https:/... - 02:34 PM feature request #9010 (Closed): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- All suggested improvements are now implemented.
I've chosen to keep the label and to replace "Classificatorical stat... - 02:02 PM feature request #9038 (Resolved): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Changed from DefaultQuantitativeDescriptionBuilder to QuantitativeDataFormatter to create the label string. If the ha...
- 01:56 PM feature request #6878 (Resolved): choose a base font for the portal and deliver it from the drupal module or theme
- * Umstellen des zen_dataportal themes auf Noto Sans - DONE
* Installation der dazu passenden Noto Mono - DONE
* En... - 11:20 AM bug #8903 (Resolved): Remember expansion state in factual data view
- this should be fixed now.
- 11:19 AM bug #8954 (Closed): Details and Supplemental Data View do not save the expansion state of sections again
- OK, I moved the factual data issue to a new ticket #9057
- 10:34 AM bug #8954: Details and Supplemental Data View do not save the expansion state of sections again
- Andreas Müller wrote:
> For the supplemental data view and the details view the behavior seems to be fixed.
>
> D... - 11:17 AM feature request #9057 (New): Remember expansion state in factual data view when changing focus
- The details view and the supplemental data view remember their expansion state when the focus changes. This is not ye...
- 11:12 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Is this ticket ready for review or are there open issues (beside the known PK-Generation issues which we should move ...
- 10:56 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- the key generation is also moved to the context menu and the buttons are removed now. The funtionality of key generat...
- 10:25 AM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
- Applied in changeset commit:taxeditor|93bca431d69ab3aab0080702d425bc1523cbf0f1.
- 09:03 AM bug #9047 (Closed): Search does not return orphaned synonyms
- 02:19 AM feature request #7432 (In Progress): Show default login only if the account has not been changed
- Implemented now that default login is shown only for localhost mgd. (v 5.15)
06/08/2020
- 04:17 PM feature request #9010 (In Progress): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- Andreas Müller wrote:
> On the taxon page in the tabbed version I would move the text above the tabs (immediately be... - 03:37 PM feature request #9022 (Resolved): Implement lifespan for Person Details View
- 03:35 PM feature request #9022 (In Progress): Implement lifespan for Person Details View
- The lifespan is added to the details view of persons, this is fixed, but there is a general problem with the time per...
- 03:34 PM bug #9056 (New): Entering a year in timeperiod element recalculates the dimension of the textfields in strange way
- see #9022#note-3
- 02:22 PM bug #8857 (Feedback): NonUniqueObjectException when creating new taxon
- 01:57 PM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Katja Luther wrote:
> The label issue is caused by the DefaultQuantitativeDescriptionBuilder because exact values ar... - 11:28 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- now the incorrect state is not cleared, but the value is not stored. I had a look how it is handled for urls and the ...
- 10:20 AM feature request #9038 (In Progress): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- The label issue is caused by the DefaultQuantitativeDescriptionBuilder because exact values are not handled.
- 01:56 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- I can't reproduce it when starting from workspce, I will try it again with nightly build.
- 10:47 AM bug #8959 (Feedback): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- 01:49 PM bug #9047: Search does not return orphaned synonyms
- Katja Luther wrote:
> ah, you are right, but then I think it should be "LEFT JOIN s.acceptedTaxon as t".
no the t... - 01:45 PM bug #9047: Search does not return orphaned synonyms
- Andreas Müller wrote:
> Katja Luther wrote:
> > I think the left join is not necessary because only the id of the s... - 11:29 AM bug #9047 (Resolved): Search does not return orphaned synonyms
- Katja Luther wrote:
> I think the left join is not necessary because only the id of the synonyms/taxa are collected ... - 09:55 AM bug #9047 (Feedback): Search does not return orphaned synonyms
- I think the left join is not necessary because only the id of the synonyms/taxa are collected in the sql query, but t...
- 09:51 AM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- I am currently reviewing this issue (and implementing some further improvements)
- 09:43 AM bug #9052 (Closed): NPE in name details view for incomplete name relationships
- works.
06/05/2020
- 10:40 AM bug #9055 (Closed): Relabel "Type Designation" to "Type Information"
- looks fine.
06/04/2020
- 05:12 PM bug #9055: Relabel "Type Designation" to "Type Information"
- I fixed this. Please review.
- 05:05 PM bug #9055 (Resolved): Relabel "Type Designation" to "Type Information"
- Applied in changeset commit:taxeditor|8886565aa01ea7b0a0d2577a199e3cce70554023.
- 12:32 PM bug #9055 (Feedback): Relabel "Type Designation" to "Type Information"
- in Name Details View.
This is because textuell type designations are usually no desingations but only information ... - 04:53 PM bug #9053 (Closed): CCE when selecting Character Tree for descriptive dataset
- Fixed
- 09:39 AM bug #9053: CCE when selecting Character Tree for descriptive dataset
- please review
- 09:37 AM bug #9053 (Resolved): CCE when selecting Character Tree for descriptive dataset
- Applied in changeset commit:cdmlib|e0e63b180e28c4bcd085c31ac6055d117aea00de.
- 08:57 AM bug #9053: CCE when selecting Character Tree for descriptive dataset
- The same problem occurs when selecting a character tree in the Character Editor.
- 08:48 AM bug #9053 (Closed): CCE when selecting Character Tree for descriptive dataset
- ~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/termtree.service
last remote r... - 11:40 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > An important open issue is that it is currently not possible to add... - 09:54 AM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- 09:41 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> An important open issue is that it is currently not possible to add a "literature"- or a "de... - 09:25 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Also the buttons "Aggregation" and "Generate Polytomous Key" should be handled in the menu, not as separate buttons. ...
- 09:22 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- An important open issue is that it is currently not possible to add a "literature"- or a "default"-description for a ...
- 09:19 AM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
- "Add description" is still missing a translation. Also I think we should call it "Add specimen description" because i...
- 11:39 AM feature request #9054 (New): Allow adding taxon descriptions to matrix for taxa which have no specimen descriptions attached yet
- Currently only taxa are shown which do have speciemn descriptions attached. This is not correct because it should als...
- 09:54 AM bug #8754 (Feedback): DescriptionElements are not deleted with the Descriptive Data Set
- Generally I have problems to understand this ticket.
Do I understand it correctly that the expectation is that del... - 09:32 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- When trying to delete a descriptive dataset I got the following exception. Though it seems as if the delete was execu...
- 12:13 AM bug #8662 (Feedback): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
- If the tree list is empty it works now as expected.
>Auch wenn Taxa existieren, wird das Kontextmenü angezeigt und...
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