Project

General

Profile

Activity

From 06/01/2020 to 06/30/2020

06/30/2020

10:15 PM bug #9115 (Resolved): NPE in reference bulk editor
please review Katja Luther
10:14 PM bug #9115 (Closed): NPE in reference bulk editor
Hallo
im Bulk Editor – ich habe eine Ref. gelöscht, anschl. nicht gespeichert, die nächste gelöscht (nach OK für Spe...
Katja Luther
05:53 PM Revision f719c88c (cdm-server): Merge branch 'release/5.16.0' into develop
jenkins
05:53 PM Revision 7327ff50 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
05:52 PM Revision af1eb1a9 (cdm-server): updating poms for branch'release/5.16.0' with non-snapshot versions
jenkins
05:51 PM Revision c522a018 (cdm-webapp): Merge branch 'release/5.16.0' into develop
jenkins
05:51 PM Revision e0723049 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
05:51 PM Revision 55c17fa5 (cdm-webapp): updating poms for branch'release/5.16.0' with non-snapshot versions
jenkins
05:50 PM Revision 98334074 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.16.0
jenkins
05:26 PM Revision 2676eff5 (cdm-vaadin): Merge branch 'release/5.16.0' into develop
jenkins
05:26 PM Revision 4fa5b615 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
05:25 PM Revision 86f053e0 (cdmlib): use UTF8 for separator in 2 tests
Andreas Müller
05:22 PM Revision 8f5a007c (taxeditor): Merge branch 'release/5.16.0' into develop
jenkins
05:22 PM Revision ddfc908b (taxeditor): Merge branch 'release/5.16.0'
jenkins
05:22 PM Revision a519a001 (cdm-vaadin): updating poms for branch'release/5.16.0' with non-snapshot versions
jenkins
05:22 PM Revision 09aa2c7d (cdm-vaadin): jenkins bumping cdmlib.version to 5.16.0
jenkins
05:22 PM Revision d74de2e7 (cdm-dataportal): Merge branch 'release/5.16.0' into develop
jenkins
05:22 PM Revision eec0f287 (cdm-dataportal): updating poms for branch'release/5.16.0' with non-snapshot ve...
jenkins
05:21 PM Revision 824de571 (cdm-dataportal): release-preparation: production level css
jenkins
05:21 PM Revision a2784753 (cdmlib): Updating develop poms back to pre merge state
jenkins
05:21 PM Revision 70091156 (cdmlib): Merge branch 'master' into develop
jenkins
05:21 PM Revision c0d6a0f1 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
05:21 PM Revision dc304ee0 (cdmlib): Merge branch 'release/5.16.0'
jenkins
05:06 PM feature request #6429 (Worksforme): Reconstruct Admin Preferences
yes this is implemented a long time ago. Katja Luther
04:05 PM feature request #6429: Reconstruct Admin Preferences
Can you check this? Andreas Müller
04:57 PM Revision 62e21dc4 (cdmlib): updating poms for branch'release/5.16.0' with non-snapshot versions
jenkins
04:53 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Please decide who wants to review this ticket.
> >
> > By ...
Andreas Müller
04:26 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Müller wrote:
> Please decide who wants to review this ticket.
>
> By the way: I adapted the session insp...
Andreas Kohlbecker
03:14 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Please decide who wants to review this ticket.
By the way: I adapted the session inspection dialog in TaxEditor in...
Andreas Müller
03:11 PM bug #7709 (Resolved): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the...
This should be fixed now. The transient entity cacher handles now both transient and volatile objects via the same UI... Andreas Müller
04:44 PM Revision bf6a153d (cdm-dataportal): updating poms for 5.17.0-SNAPSHOT development
jenkins
04:43 PM Revision 3354ffdb (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.16.0-S...
jenkins
04:43 PM Revision 549fa784 (cdm-webapp): updating poms for 5.16.0 branch with snapshot versions
jenkins
04:43 PM Revision 9c3bb185 (cdm-webapp): updating poms for 5.17.0-SNAPSHOT development
jenkins
04:42 PM Revision 72018033 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.17.0-S...
jenkins
04:41 PM Revision ace1ec64 (taxeditor): Updated version in pom / project files to taxeditor version : 5.17...
jenkins
04:40 PM Revision dd650a1e (taxeditor): Updated version in pom / project files to taxeditor version : 5.16...
jenkins
04:40 PM Revision 2b84f0ee (cdm-vaadin): jenkins bumping cdmlib.version to 5.16.0-SNAPSHOT
jenkins
04:40 PM Revision 0d1207fe (cdm-vaadin): updating poms for 5.17.0-SNAPSHOT development
jenkins
04:40 PM Revision 5f3270f9 (cdm-vaadin): updating poms for 5.16.0 branch with snapshot versions
jenkins
04:40 PM Revision 4b51b4a2 (cdm-vaadin): jenkins bumping cdmlib.version to 5.17.0-SNAPSHOT
jenkins
04:40 PM Revision 531d176e (cdm-server): updating poms for 5.17.0-SNAPSHOT development
jenkins
04:36 PM Revision 3903c1b1 (cdmlib): updating poms for 5.17.0-SNAPSHOT development
jenkins
04:25 PM feature request #9111 (Closed): Handle Malformed URIs
This works well. I created a new ticket for moving the code to cdmlib: #9114 Andreas Müller
03:42 PM feature request #9111 (Resolved): Handle Malformed URIs
please review. Katja Luther
03:41 PM feature request #9111: Handle Malformed URIs
We already have the UrlUtf8Coder in cdmlib.commons Katja Luther
03:40 PM feature request #9111: Handle Malformed URIs
suggestion of AK:
ich halte es schon für richtig, generell URIs zu verwenden, sollten aber nicht erlaubte Zeichen ...
Katja Luther
03:39 PM feature request #9111 (Closed): Handle Malformed URIs
mail WB:
ich habe hier wieder so eine URL die ich nicht als URI abspeichern kann:
https://bioone.org/journals/Cac...
Katja Luther
04:23 PM feature request #9114 (New): Handle malformed URIs in user type
The fix for #9111 should be moved to a new URI user type wrapper that used instead of the current URI class. Otherwis... Andreas Müller
04:19 PM bug #9112 (Closed): Widget is disposed when closing factual data view
Don't know if this is easy to reproduce. But I did not get an exception when closing the facts view. Andreas Müller
03:46 PM bug #9112 (Resolved): Widget is disposed when closing factual data view
please review or close the ticket. Katja Luther
03:45 PM bug #9112 (Closed): Widget is disposed when closing factual data view
mail WB:
Hallo, nach dem Schließen des Fact-views nach Eingabe einer Citation beim Speichern des Taxons. Der neue ...
Katja Luther
04:18 PM bug #6276 (Closed): Nomenclatural references show parsed date string instead of publication year
from what I've seen during the last days, this seems to be solved completely. Andreas Kohlbecker
04:18 PM bug #9113 (Closed): NPE when deleting classification
This is fixed. Andreas Müller
03:50 PM bug #9113 (Resolved): NPE when deleting classification
please review Katja Luther
03:48 PM bug #9113 (Closed): NPE when deleting classification
mail AM:
Hallo,
Beim Löschen einer Classification habe ich den Fehler unten bekommen. Im Code unten wurde wohl ...
Katja Luther
04:14 PM feature request #8585 (Closed): Factual Data View: new DesctiptionElements shoud be selected imme...
This works very well know. Nice new workflow improvement. Andreas Müller
04:11 PM bug #9097 (Closed): specimen coordinate links in maps to geohack service broken
works as expected Andreas Kohlbecker
04:04 PM bug #9102 (Closed): taxonNode status icon breaks sort order in taxontree
Andreas Kohlbecker
04:01 PM bug #9095 (Closed): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{...
Andreas Kohlbecker
03:46 PM bug #9095 (Resolved): LazyInitializationException (LIE) in portal/description/distributionInfoFor...
Andreas Kohlbecker
12:25 PM bug #9095 (In Progress): LazyInitializationException (LIE) in portal/description/distributionInfo...
the last commit:a8905b5d also causes Problems since `TeamAutoInitializer` needs to distinguish Team and Person to avo... Andreas Kohlbecker
03:37 PM Revision b6bea419 (cdmlib): ref #9095 improving AdvancedBeanInitializer performance by using Opti...
Andreas Kohlbecker
03:36 PM feature request #9078 (Closed): Handle name parsing and deduplication on server side
Tested:
Authors, the author is correctly deduplicated for persons with same abbrevTitle, also if the already exist...
Katja Luther
03:02 PM feature request #9078: Handle name parsing and deduplication on server side
This should work now. Can you please review. Andreas Müller
03:28 PM bug #5710 (In Progress): Changing the database connection must reset all caches
Andreas Müller
03:11 PM Revision d2a8e3bf (cdmlib): ref #9095 falling back to explicite bean property intialization for T...
Andreas Kohlbecker
02:59 PM Revision cc71e44c (taxeditor): encode invalid character in URI
Katja Luther
02:54 PM Revision ee500fb8 (taxeditor): ref #9078 fix caching for deduplicated name in ParseHandler
Andreas Müller
02:53 PM Revision 8a286db5 (taxeditor): Exclude ignored entities from session expection
Andreas Müller
02:50 PM Revision 3a6a6dab (taxeditor): cleanup
Andreas Müller
02:49 PM Revision 3fbb8717 (taxeditor): Adapt ICdmEntitySession to new includeIgnored parameter
Andreas Müller
02:45 PM Revision 8e692c4e (cdm-vaadin): adapt EntityCacheDebuggerComponent to new includeIgnored parameter
Andreas Müller
02:40 PM Revision 86d726ac (cdmlib): add includeIgnore parameter to EntityCacherDebugResult and minor refa...
Andreas Müller
02:40 PM Revision be3c44be (cdmlib): cleanup and improve logging in EntityCacherDebugResult
Andreas Müller
02:31 PM Revision b8404854 (cdmlib): improve logging in CacheLoader
Andreas Müller
01:12 PM feature request #9110 (Feedback): Add additional informations to metadata table of cdmLight
For the usage of cdmLight in GfBio we need some more information in the metaData table:
* creationDate
* Base URL...
Katja Luther
12:05 PM bug #9109 (Closed): Search button font icon broken
![](picture229-1.png)
even if https://www.phycobank.org/sites/phycobank/modules/cdm_dataportal/fonts/fontawesome-f...
Andreas Kohlbecker
11:33 AM bug #8167 (Resolved): Permission denied for Submitter when adding section to newly created journal
bitte testen Andreas Kohlbecker
11:16 AM EDIT Platform Etablierung task #9108 (New): Prepare Kurs Borsch
Voraussichtlich soll der Kurs von Thomas Borsch wieder stattfinden.
Rechtzeitige Vorbereitung ist wichtig.
**Astr...
Andreas Kohlbecker
11:09 AM task #9106 (New): quick person entry via identifier (ORCID, IPNI, ...)
The data entry for persons could be simplified by a mechanism which fetches the details from an authority after entry... Andreas Kohlbecker
10:41 AM task #9105 (Closed): rename NodeSortMode etc to TaxonNodeSortMode
die Enums NodeSortMode und NodeDtoSortMode sind etwas zu allgemein bennant. Besser: TaxonNodeSortMode und
TaxonNodeD...
Andreas Kohlbecker

06/29/2020

11:55 PM Revision cf186d49 (cdmlib): revert load with update only
Andreas Müller
11:08 PM Revision 08fc65ee (cdmlib): revert moving loadRecursive maps and collections
Andreas Müller
10:33 PM Revision dc307095 (cdmlib): remove redundant code (cont.)
Andreas Müller
10:08 PM Revision cd1129cb (cdmlib): remove redundant code
Andreas Müller
06:26 PM Revision 951591a8 (taxeditor): add loading of default language to CdmStoreConnector
Andreas Müller
06:26 PM Revision caceb054 (taxeditor): cleanup
Andreas Müller
06:09 PM Revision 2203967c (cdm-dataportal): ref #9102 proper conversion of block to render array and avoi...
Andreas Kohlbecker
05:43 PM Revision ab8cbdf4 (taxeditor): upgrading common-beanutils to 1.9.4
Andreas Kohlbecker
05:41 PM Revision 7eef3600 (cdmlib): upgrading common-beanutils to 1.9.4 and opting out from BEANUTILS_520
Andreas Kohlbecker
05:08 PM Revision faf574aa (cdmlib): adapt Language to store cached default language term locally as stati...
Andreas Müller
05:07 PM Revision 39a33a72 (cdmlib): handle update without recursion correctly in CacheLoader
Andreas Müller
05:04 PM Revision 344a782d (cdmlib): cleanup and rename methods and fix Fixme in ProxyUtils
Andreas Müller
04:37 PM Revision 9a9d9186 (taxeditor): beanutils 1.9.2
Andreas Kohlbecker
04:14 PM Revision 525e9e11 (cdmlib): ref #9102 TaxonNodeDto with statusNote, nodeStatus as status and stat...
Andreas Kohlbecker
04:13 PM Revision 54164245 (cdm-dataportal): ref #9102 adapting to modified TaxonNodeDto
Andreas Kohlbecker
02:40 PM Revision 6157a0af (taxeditor): managing commons-beanutils-1.9.2.jar via maven
Andreas Kohlbecker
02:25 PM Revision 687bfc97 (taxeditor): avoid NPE and fix closing of obsolete editors when deleting classi...
Katja Luther
02:03 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
Katja Luther wrote:
> Andreas Müller wrote:
> > I am sure there is a duplicate ticket for this already. Can you ple...
Andreas Müller
01:25 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
Andreas Müller wrote:
> I am sure there is a duplicate ticket for this already. Can you please check.
I only foun...
Katja Luther
01:24 PM feature request #8585 (Resolved): Factual Data View: new DesctiptionElements shoud be selected im...
this is fixed. Please review. Katja Luther
01:52 PM Revision a936868b (taxeditor): ref #8585: remove not necessary method
Katja Luther
01:48 PM Revision ffb73e56 (taxeditor): avoid widget is disposed exception
Katja Luther
01:22 PM Revision b3860b27 (taxeditor): set selection after facts creation
Katja Luther
01:10 PM Revision 9b8eb609 (cdm-dataportal): ref #9102 fixing TaxonNode.source footnote missing & generali...
Andreas Kohlbecker
12:58 PM Revision 713fff1d (taxeditor): cleanup
Andreas Müller
12:47 PM Revision d4180c93 (cdmlib): ref #9078 allow ignoring recursive loading of terms (cont.)
Andreas Müller
12:46 PM Revision e0788e20 (cdmlib): cleanup
Andreas Müller
12:43 PM Revision 323606bc (cdmlib): rename internal loadRecursive calls to distinguish them more clearly
Andreas Müller
12:28 PM Revision 7ccb6888 (cdm-dataportal): whitespace
Andreas Kohlbecker
11:54 AM Revision 3049fdcd (cdm-dataportal): ref #9102 convering both cases for taxon in current classific...
Andreas Kohlbecker
11:10 AM Revision 8db5e42f (cdm-dataportal): adapting tests
Andreas Kohlbecker
09:49 AM Revision 9722b576 (cdmlib): Revert "upgrade commons-beanutils from 1.9.2 to 1.9.4"
This reverts commit 8f08a3aec70ba12d48ab061327524a69d766a109. Andreas Müller
09:36 AM Revision 8c2c68ce (taxeditor): fix NPE in reference bulk editor
Katja Luther
09:24 AM Revision 68405a5a (taxeditor): cleanup
Andreas Müller
09:24 AM Revision 0dd61d7a (taxeditor): rename deproxy to deproxyIfInitialized
Andreas Müller
09:22 AM Revision 18efc5a7 (cdmlib): rename deproxy to deproxyIfInitialized
Andreas Müller
02:31 AM Revision 7c37f7fa (taxeditor): cleanup
Andreas Müller
02:29 AM Revision fd280052 (taxeditor): cleanup CdmEntitySessionAwareTest
Andreas Müller

06/28/2020

12:58 AM Revision efd33966 (cdm-vaadin): rename CdmCacher to CdmCacherBase
Andreas Müller
12:57 AM feature request #9078 (Resolved): Handle name parsing and deduplication on server side
Applied in changeset commit:taxeditor|b6f9eb474c27f732c7f2cdc0d0fd5a6a5e45d174. Andreas Müller
12:56 AM Revision b6f9eb47 (taxeditor): fix #9078 finally switch to new deduplication handling (but keep o...
Andreas Müller
12:52 AM Revision c86eab33 (taxeditor): ref #9078 include Representation to permanent cache
Andreas Müller
12:51 AM Revision 42d09199 (taxeditor): cleanup
Andreas Müller
12:50 AM Revision 71f697d9 (taxeditor): rename CdmCacher to CdmCacherBase
Andreas Müller
12:48 AM Revision 0c63c580 (cdmlib): ref #9078 allow ignoring recursive loading of terms
Andreas Müller
11:47 PM Revision 1edf162a (cdmlib): improve logging for CacheLoader
Andreas Müller
10:06 PM Revision 4b2b6fc7 (cdmlib): rename CdmCacher to CdmCacherBase
Andreas Müller
10:02 PM Revision 22c3bea0 (cdmlib): renaming "putToCache" and "entityAlreadyVisisted" "classFields", fix ...
Andreas Müller
08:51 PM Revision 7c0aeabf (cdmlib): cleanup
Andreas Müller
04:12 PM Revision 36b21d6e (taxeditor): cleanup
Andreas Müller
03:30 PM Revision b31b98ce (taxeditor): remove unitils dependencies
Andreas Müller
03:23 PM Revision 8d5dc888 (taxeditor): upgrade commons-beanutils from 1.9.2 to 1.9.4
Andreas Müller
03:00 PM Revision 8f08a3ae (cdmlib): upgrade commons-beanutils from 1.9.2 to 1.9.4
Andreas Müller

06/27/2020

06:49 PM Revision ec6ac40a (taxeditor): cleanup getService
Andreas Müller
06:33 PM bug #9070: Adapt preference page to feature.isAvailableFor...
Looks like this was fixed during 5.15 already. Should we move it back? Andreas Müller
06:29 PM Revision 4b24820e (cdmlib): ref #9071 improve with-month-name period parsing
Andreas Müller
06:05 PM Revision 287b0222 (taxeditor): ref #9071 update MANIFEST.MF to include format.common package
Andreas Müller
11:54 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and Exte...
An ExtendedTimePeriodFormatter exists now. Details might be improved in future.
I implemented formatters for all 3 T...
Andreas Müller
11:52 AM Revision b93b6f69 (taxeditor): ref #9071 use ExtendedTimePeriodFormatter in DescriptionHelper and...
Andreas Müller
11:45 AM Revision 2f4f765e (cdmlib): add preferred languages to DesciptionElementFormatterBase
Andreas Müller
11:20 AM Revision e25cc9dd (cdmlib): cleanup
Andreas Müller
11:20 AM Revision 3ee87683 (cdmlib): ref #9071 add formatter for VerbatimTimePeriod
Andreas Müller
11:08 AM Revision dea49164 (cdmlib): ref #9071 add formatter in ExtendedTimePeriod.toString
Andreas Müller
11:01 AM Revision 16f88eb2 (cdmlib): cleanup
Andreas Müller
11:01 AM Revision d846e295 (cdmlib): ref #9071 add additional ExtendedTimePeriodFormatter test
Andreas Müller
10:51 AM Revision 6d7ea74e (cdmlib): ref #9071 create TimePeriodFormatter and ExtendedTimePeriodFormatter ...
Andreas Müller
10:47 AM Revision 80466da5 (cdmlib): move some formatter tests to correct package
Andreas Müller
09:45 AM Revision 8fe64a0b (cdmlib): ref #9071, ref #6276 improve TimePeriod parsing with continued
Andreas Müller
09:44 AM Revision 20e45ee8 (cdmlib): cleanup
Andreas Müller
09:09 AM Revision e90c7158 (cdm-dataportal): ref #6276, ref 9071 adapt dataportal tests to new TimePeriod ...
Andreas Müller
09:06 AM bug #6276 (Resolved): Nomenclatural references show parsed date string instead of publication year
This should be fixed now. Andreas Müller
09:03 AM Revision def46519 (cdmlib): ref #9071, ref #6276 improve TimePeriod parsing for periods with shar...
Andreas Müller
08:43 AM Revision b0ceec1a (cdm-dataportal): ref #6276, ref 9071 adapt dataportal tests to new TimePeriod ...
Andreas Müller

06/26/2020

11:21 PM Revision b486d565 (cdmlib): ref #7709 rename newEntity to volatileEntity
Andreas Müller
11:12 PM Revision ac3d6e3a (taxeditor): ref #7709 use load() for newEntities
Andreas Müller
11:11 PM Revision 997dddd5 (taxeditor): cleanup
Andreas Müller
11:10 PM Revision 8991d6e9 (cdmlib): ref #7709 rename addNewEntity to putNewEntity and check for existing ...
Andreas Müller
11:09 PM Revision b4c19aff (cdmlib): cleanup
Andreas Müller
11:09 PM Revision d7be01af (cdmlib): ref #7709 rename putMethods in cacher
Andreas Müller
11:05 PM Revision 1d2c4048 (cdmlib): ref #9104 add NatrualLanguageTerm to hibernate.cfg.xml and recompile ...
Andreas Müller
10:25 PM feature request #9104 (New): NaturalLanguageTerm
Add NaturalLanguageTerm to the loaded terms. Currently it is loaded on the fly (which creates overhead in TaxEditor a... Andreas Müller
08:50 PM Revision 8d388c9a (cdmlib): add newEntitiesMap.clear to Cacher.clear
Andreas Müller
08:50 PM Revision b51bec3a (cdmlib): rename load to put
Andreas Müller
08:50 PM Revision db6e8702 (cdmlib): cleanup
Andreas Müller
07:36 PM Revision 56a4e7d4 (taxeditor): cleanup
Andreas Müller
07:35 PM Revision 5b336515 (taxeditor): removing unnecessary class parameters from deproxy and remove usag...
Andreas Müller
06:48 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
By the way, there is already a UUID based cacher in cdmlib-services (eu.etaxonomy.cdm.api.cache.CdmCacher) Andreas Müller
05:44 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
To me it is not clear anymore, why the CdmTransientEntityCacher should handle only transient but not volatile objects... Andreas Müller
05:46 PM Revision 281ec7b2 (cdm-dataportal): ref #9102 adapting tests
Andreas Kohlbecker
03:52 PM bug #9102 (Resolved): taxonNode status icon breaks sort order in taxontree
Andreas Kohlbecker
03:51 PM Revision f959fedb (cdmlib): ref #9102 using TaxonNodeDto instead of TaxonNodeDtoBeanProcessor for...
Andreas Kohlbecker
03:32 PM bug #9103 (Feedback): missing exception handling in TaxoNodeDto
Andreas Kohlbecker
03:32 PM bug #9103: missing exception handling in TaxoNodeDto
@Katja: has far as I could see, this stems from you, was there any urgent reason for this? Andreas Kohlbecker
03:31 PM bug #9103 (Resolved): missing exception handling in TaxoNodeDto
see
~~~java
try{
TaxonNode parent = taxonNode.getParent();
parentUUID = parent...
Andreas Kohlbecker
03:28 PM Revision 562acef2 (cdmlib): using TaxonNodeDto instead of TaxonNodeDtoBeanProcessot for multiple ...
Andreas Kohlbecker
03:27 PM Revision 64cfdac1 (cdm-dataportal): switching portal to real TaxonNodeDTOs
Andreas Kohlbecker
12:10 PM Revision 42c3d8cd (cdmlib): cleanup
Andreas Müller
11:51 AM Revision c844706d (taxeditor): fix possible concurrent modification exception
Andreas Müller
11:20 AM feature request #3097 (Worksforme): disable editors if a user has insufficient grants for a taxon...
Andreas Müller wrote:
> I am not sure if I understand what is meant here with "enabled".
> Currently it seems possi...
Katja Luther
10:08 AM bug #9092 (Closed): Multiple Representation Exception when editing factual data
The problems were caused by a missing modelCache update, this is done and it works as expected. Katja Luther
03:04 AM Revision ac1b1365 (cdmlib): update cached cdm model to 5.15.2
Andreas Müller
03:03 AM Revision 6197d70a (cdmlib): cleanup
Andreas Müller

06/25/2020

01:47 AM Revision 62661acc (taxeditor): ref #9071 use toString() instead of getTimePeriod()
Andreas Müller
01:46 AM Revision 6876aa51 (cdmlib): ref #9071 remove ExtendedTimePeriodPartialFormatter which is no longe...
- ExtendedTimePeriod.toString() should be enough Andreas Müller
01:43 AM Revision b3b61969 (taxeditor): cleanup
Andreas Müller
01:42 AM Revision ffd7b090 (taxeditor): ref #9071 use getTimePeriod instead of ExtendedTimePeriodPartialFo...
Andreas Müller
01:22 AM Revision fddcac5e (cdmlib): ref #9071, ref #6276 fix order of TimePeriodFormatting to DD MMM YYYY...
Andreas Müller
01:21 AM Revision f7d206b6 (cdmlib): cleanup
Andreas Müller
01:20 AM Revision ce666ef3 (cdmlib): ref #9071, ref #6276 fix order of TimePeriodFormatting to DD MMM YYYY
Andreas Müller
12:58 AM bug #6276 (In Progress): Nomenclatural references show parsed date string instead of publication ...
Andreas Müller
12:56 AM Revision d6eec685 (cdmlib): ref #9071 use new partial formatting also in ExtendedTimePeriodPartia...
Andreas Müller
12:50 AM Revision fb5527b8 (cdmlib): cleanup
Andreas Müller
12:47 AM Revision bf3b1132 (cdmlib): ref #9071, ref #6276 Change TimePeriodFormatting to YYYY-MMM-DD
Andreas Müller
07:03 PM feature request #9101: Add feature "Fruiting Period"
Applied in changeset commit:cdmlib|33ab47c40c8cc58e91294096f72d770f71d398b8. Andreas Müller
06:54 PM feature request #9101 (Resolved): Add feature "Fruiting Period"
Andreas Müller
06:23 PM feature request #9101 (Closed): Add feature "Fruiting Period"
similar to flowering period #8991 Andreas Müller
07:03 PM Revision 33ab47c4 (cdmlib): fix #9101 fix compile error
Andreas Müller
06:50 PM feature request #8991: Add feature "Flowering Period"
Applied in changeset commit:cdmlib|25e3014d375dbc2951b2ff2053a1925e2c5a8a47. Andreas Müller
06:42 PM feature request #8991: Add feature "Flowering Period"
Andreas Müller wrote:
> Still need to check if supportsTemporalData is autoamtically created on production (on test ...
Andreas Müller
06:50 PM Revision 6f4cffe6 (cdmlib): cleanup
Andreas Müller
06:50 PM Revision 25e3014d (cdmlib): fix #8991 fruiting period added
Andreas Müller
06:47 PM bug #9092: Multiple Representation Exception when editing factual data
As the problems comes with source and referenceForParentChildRelation I tried to revert the changes for the reference... Katja Luther
12:47 PM bug #9092: Multiple Representation Exception when editing factual data
deeper debugging results that the multiple representation does not come from the sec reference but from the descripti... Katja Luther
06:29 PM bug #9102 (Closed): taxonNode status icon breaks sort order in taxontree
for example in the cihorieae portal *Incertae sedis* and *Nomina excludenda* should come as last in the tree:
![](...
Andreas Kohlbecker
06:22 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
moreover the whole reference object as serialized in webservice responses can be simplified a lot. The `authorship` ... Andreas Kohlbecker
05:57 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
the cause for this bug was not related to #7331 but is caused by an unexpected behavior of ` AdvancedBeanInitializer.... Andreas Kohlbecker
01:08 PM bug #9095 (Resolved): LazyInitializationException (LIE) in portal/description/distributionInfoFor...
solved by catching the exception in the `TeamOrPersonBaseBeanProcessor` since a real solution (#7331) may need some m... Andreas Kohlbecker
12:13 PM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
this problem is potentially highly related to #7331 since the init strategy includes the `sources.citation.authorshi... Andreas Kohlbecker
11:59 AM bug #9095: LazyInitializationException (LIE) in portal/description/distributionInfoFor/{uuid}
it apends at `DistributionInfoDTO.tree.children.children.children.data.sources.citation.authorship.nomenclaturalTitle... Andreas Kohlbecker
08:36 AM bug #9095 (Closed): LazyInitializationException (LIE) in portal/description/distributionInfoFor/{...
test links:
* https://europlusmed.org/cdm_dataportal/taxon/7c8012f2-bbda-4e51-83cd-39a06994098c
* http://cichorie...
Andreas Kohlbecker
06:15 PM feature request #9100 (New): Improve temporal facts data model
AM (an WGB):
ich [bin im Cubaportal] auf die Phenology-Daten gestolpert.
Z.B. http://portal.cybertaxonomy.org/...
Andreas Müller
06:10 PM Revision e7f3789b (cdm-dataportal): refactoring theme_cdm_reference to cdm_reference_markup
Andreas Kohlbecker
05:40 PM Revision a8905b5d (cdmlib): reverting commit last for ref #9095, ref #9096, ref #7331 for a bette...
Andreas Kohlbecker
01:59 PM Revision 927a1c72 (cdmlib): ref #7331 restoring lost test methods comment
Andreas Kohlbecker
01:06 PM bug #9096 (Duplicate): LazyInitializationException (LIE) in DescriptionElementListController.getD...
Andreas Kohlbecker
01:05 PM bug #9096: LazyInitializationException (LIE) in DescriptionElementListController.getDescriptionEl...
duplicate of #9095 Andreas Kohlbecker
08:44 AM bug #9096 (Duplicate): LazyInitializationException (LIE) in DescriptionElementListController.getD...

test link https://europlusmed.org/cdm_dataportal/taxon/7c8012f2-bbda-4e51-83cd-39a06994098c
~~~
08:42:18.346 ...
Andreas Kohlbecker
12:22 PM Revision af4969c8 (cdmlib): ref #9095, ref #9096 catching LIEs at Team.members in TeamOrPersonBas...
Andreas Kohlbecker
12:16 PM task #7330: TitleAndNameCacheAutoInitializer misses out References
potentially a duplicate of #7331 - needs to be checked, though!!! Andreas Kohlbecker
11:38 AM bug #9099 (Closed): placemark icon in kml map not clickable
as long the error radius diameter exceeds the placemark icon the icon can not be clicked
http://test.e-taxonomy.e...
Andreas Kohlbecker
11:35 AM bug #9097: specimen coordinate links in maps to geohack service broken
example link for testing http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/ec22a1f9-9fd5-4cc... Andreas Kohlbecker
11:32 AM bug #9097 (Resolved): specimen coordinate links in maps to geohack service broken
Applied in changeset commit:cdmlib|00a1503b7cf1c77079368394dfcc3375c6d733f9. Andreas Kohlbecker
11:23 AM bug #9097 (In Progress): specimen coordinate links in maps to geohack service broken
Andreas Kohlbecker
09:05 AM bug #9097 (Closed): specimen coordinate links in maps to geohack service broken
the service api has changed, links should now be like
https://geohack.toolforge.org/geohack.php?language=en&params...
Andreas Kohlbecker
11:32 AM Revision 00a1503b (cdmlib): fix #9097 updating to new geohack API
Andreas Kohlbecker
10:47 AM Revision 652b7ffc (cdm-dataportal): typos
Andreas Kohlbecker
09:46 AM task #9098 (New): Update or Migration for the Dataportal software
The Dataportal is currently based on Drupal 7 which will be at end of life on **November 28, 2022** (see https://www.... Andreas Kohlbecker

06/24/2020

01:56 AM Revision 84bff3eb (taxeditor): cleanup
Andreas Müller
01:55 AM Revision 1871c770 (taxeditor): revert removing findWithUpdate
Andreas Müller
01:53 AM Revision 2d3429b0 (cdmlib): revert removing findWithUpdate
Andreas Müller
01:11 AM Revision 3886664b (taxeditor): cleanup
Andreas Müller
12:48 AM Revision 31cfe10f (taxeditor): javadoc
Andreas Müller
12:47 AM Revision 270dbad4 (taxeditor): remove findWithUpdate from CommonService
Andreas Müller
12:40 AM Revision 604437b2 (cdmlib): remove redundant method findWithUpdate() from ICommonService (use fi...
Andreas Müller
12:39 AM Revision d8792e71 (cdmlib): cleanup
Andreas Müller
12:17 AM Revision e0cc4f18 (taxeditor): ref #9078 further improve null entity handling in ConversationalTr...
Andreas Müller
12:10 AM Revision d6969ebf (taxeditor): ref #9078 fix null entity handling in ConversationalTransientEntit...
Andreas Müller
11:53 PM Revision d6d15f6c (taxeditor): ref #9078 remove commented code in ParseHandler
Andreas Müller
11:53 PM Revision ffe41dcd (taxeditor): cleanup
Andreas Müller
11:49 PM Revision 2d71110d (taxeditor): ref #9078 adapt ParseHandler to new serverside deduplication
Andreas Müller
11:48 PM Revision 02e380e6 (taxeditor): ref #9078 improve UpdateResult handling in CdmTransientEntityCacher
- include result entity to the updated objects
- load updated objects also if they their ID does not yet exist in Ca...
Andreas Müller
11:48 PM Revision d990fa03 (taxeditor): cleanup
Andreas Müller
11:35 PM Revision a19d8b1b (cdmlib): cleanup
Andreas Müller
10:55 PM Revision 6f33eb6e (taxeditor): cleanup
Andreas Müller
09:53 PM bug #9092: Multiple Representation Exception when editing factual data
Katja Luther wrote:
> mail Sophia:
>
> hab gerade noch festgestellt, dass der Fehler nur bei Arten kommt, bei G...
Katja Luther
09:38 PM bug #9092: Multiple Representation Exception when editing factual data
Now I could reproduce the exception and it was again the sec reference of the taxon.
The steps to reproduce are:
...
Katja Luther
09:29 PM bug #9092: Multiple Representation Exception when editing factual data
mail Sophia:
Generell übertrage ich halt im Moment immer von der Druckversion der Flora Cuba die Daten. Also norma...
Katja Luther
02:51 PM bug #9092: Multiple Representation Exception when editing factual data
In this case the reference which has multiple representations was [Reference [type=WebPage, title=The Spermatophyta o... Katja Luther
10:56 AM bug #9092: Multiple Representation Exception when editing factual data
mail Sophia:
es passiert sowohl wenn ich nur eine Sache eingegeben habe als auch wenn es mehrere waren, normalerwe...
Katja Luther
06:59 AM bug #9092 (Closed): Multiple Representation Exception when editing factual data
Hallo liebes Edit Team,
seit dem Update bekomme ich diese Fehlermeldung super häufig wenn ich bei den Factual Data i...
Katja Luther
03:45 PM task #9094 (Resolved): Update script to update TaxonNode.source from IdentifiableSource to Descri...
This is only required on test servers which have been updated during development of 5.15. Most DBs have already been ... Andreas Müller
12:24 PM bug #9093 (New): Excpetion after deleting two references
mail WB:
Hallo
im Bulk Editor – ich habe eine Ref. gelöscht, anschl. nicht gespeichert, die nächste gelöscht (nac...
Katja Luther
12:11 PM Revision 81443195 (cdm-dataportal): improving labels for image viewers, adding description
Andreas Kohlbecker
11:55 AM Revision 97104b10 (cdm-dataportal): Merge tag '5.15.1' into develop
tagging release 1.15.1 Andreas Kohlbecker
11:54 AM Revision 5426f097 (cdm-dataportal): Merge branch 'hotfix/5.15.1'
Andreas Kohlbecker
11:54 AM Revision 3a81b245 (cdm-dataportal): ref #8134 using other error message channel
Andreas Kohlbecker
11:26 AM Revision ff28ae45 (cdmlib): ref #9010 proper initialization of TaxonNode.source
Andreas Kohlbecker
11:25 AM Revision 178d1ae6 (cdm-dataportal): ref #9010 solving some problems regarding sources and annotat...
Andreas Kohlbecker
10:56 AM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon ...
Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded and unplaced taxa should ... Andreas Müller
06:58 AM feature request #7580: User wishes: CharacterMatrix
these issues are not solved yet. Katja Luther
06:56 AM task #8130: Check if related feature data is cleared when supported facts type is changed
we need to decide how to handle this. Katja Luther

06/23/2020

11:51 PM Revision cfc9fe89 (taxeditor): cleanup
Andreas Müller
11:48 PM Revision a0cc1cd6 (cdmlib-apps): ref #9041 adapt UzbekistanAltitudeActivator to latest changes
Andreas Müller
11:48 PM Revision f9582330 (cdmlib-apps): adapt some Activators to new permission package position
Andreas Müller
11:46 PM Revision 968fbd9e (cdmlib-apps): cleanup
Andreas Müller
10:32 PM Revision 9803e871 (cdm-dataportal): adding missing space in citation - adapting tests
Andreas Kohlbecker
04:20 PM feature request #8134 (Resolved): Implement verbatim type information in dataportal
Andreas Kohlbecker
04:19 PM feature request #8165: enable logback jmx for cdm-server
we switched to logback for the cdm-server Andreas Kohlbecker
03:16 PM feature request #9064 (Closed): Add ExternalLinks to IdentifiableEntities
Andreas Müller
03:15 PM feature request #9090: Implement external links for identifiable entities in TaxEditor
Once this is implemented for references we may further discuss #7984 Andreas Müller
03:08 PM feature request #9090 (New): Implement external links for identifiable entities in TaxEditor
This is most important for references.
Minimum implementation should be in supplemental data view.
But at least f...
Andreas Müller
03:13 PM feature request #9091 (New): Show external links for identifiable entites
Most important for references Andreas Müller
03:02 PM feature request #9043 (Closed): Add feature "Altitude"
Andreas Müller
03:01 PM task #9037 (Closed): Remove old Feature.supportedXXX columns
Andreas Müller
03:01 PM task #9036 (Closed): Remove old TaxonNode.unplaced/doubtful/excluded columns
Andreas Müller
03:00 PM feature request #9004 (Closed): Make TaxonNode.referenceForParentChildRelation an OriginalSource ...
Andreas Müller
02:43 PM Revision a866450a (cdm-server): Merge branch 'release/5.15.0' into develop
jenkins
02:43 PM Revision 0ca65bf5 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
02:42 PM Revision 259163e9 (cdm-server): updating poms for branch'release/5.15.0' with non-snapshot versions
jenkins
02:42 PM Revision e4627748 (cdm-webapp): Merge branch 'release/5.15.0' into develop
jenkins
02:42 PM Revision db4a0cdc (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
02:41 PM Revision 89552d01 (cdm-webapp): updating poms for branch'release/5.15.0' with non-snapshot versions
jenkins
02:41 PM Revision d8109b58 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.15.0
jenkins
02:35 PM Revision 6d1d2edb (cdm-vaadin): Merge branch 'release/5.15.0' into develop
jenkins
02:35 PM Revision 32b08ce0 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
02:31 PM Revision 6b943263 (cdm-vaadin): updating poms for branch'release/5.15.0' with non-snapshot versions
jenkins
02:31 PM Revision 921f557e (cdm-vaadin): jenkins bumping cdmlib.version to 5.15.0
jenkins
02:31 PM Revision c6e1129a (taxeditor): Merge branch 'release/5.15.0' into develop
jenkins
02:31 PM Revision 146177b1 (taxeditor): Merge branch 'release/5.15.0'
jenkins
02:30 PM Revision 86229aab (cdm-dataportal): Merge branch 'release/5.15.0' into develop
jenkins
02:30 PM Revision 99cdc7e2 (cdm-dataportal): updating poms for branch'release/5.15.0' with non-snapshot ve...
jenkins
02:30 PM Revision 68527ca1 (cdm-dataportal): release-preparation: production level css
jenkins
02:28 PM Revision c60806e6 (cdmlib): Updating develop poms back to pre merge state
jenkins
02:28 PM Revision 7e1550c6 (cdmlib): Merge branch 'master' into develop
jenkins
02:28 PM Revision 98a29650 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
02:27 PM Revision 2a1dcb48 (cdmlib): Merge branch 'release/5.15.0'
jenkins
02:18 PM bug #9055 (Feedback): Relabel "Type Designation" to "Type Information"
Needs final discussion Andreas Müller
02:08 PM Revision d80ee113 (cdmlib): updating poms for branch'release/5.15.0' with non-snapshot versions
jenkins
02:01 PM Revision 652a9ae4 (taxeditor): Updated version in pom / project files to taxeditor version : 5.16...
jenkins
02:00 PM Revision dbe17643 (taxeditor): Updated version in pom / project files to taxeditor version : 5.15...
jenkins
01:43 PM task #9017 (Resolved): Update image link for FoG Willing images
Andreas Müller
01:42 PM Revision 670c32ca (cdm-dataportal): updating poms for 5.16.0-SNAPSHOT development
jenkins
01:41 PM Revision 0cce624e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.15.0-S...
jenkins
01:41 PM Revision 3d9191b1 (cdm-webapp): updating poms for 5.15.0 branch with snapshot versions
jenkins
01:41 PM Revision 131402e0 (cdm-webapp): updating poms for 5.16.0-SNAPSHOT development
jenkins
01:41 PM Revision 0722cc46 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.16.0-S...
jenkins
01:37 PM Revision b4c7e84e (cdm-vaadin): jenkins bumping cdmlib.version to 5.15.0-SNAPSHOT
jenkins
01:37 PM Revision 83c5ba8d (cdm-vaadin): updating poms for 5.16.0-SNAPSHOT development
jenkins
01:37 PM Revision e8f112a8 (cdm-vaadin): updating poms for 5.15.0 branch with snapshot versions
jenkins
01:37 PM Revision 8937df82 (cdm-vaadin): jenkins bumping cdmlib.version to 5.16.0-SNAPSHOT
jenkins
01:37 PM Revision 6a03a31e (cdm-server): updating poms for 5.16.0-SNAPSHOT development
jenkins
01:19 PM Revision 4f768aa9 (cdmlib): updating poms for 5.16.0-SNAPSHOT development
jenkins
01:19 PM Revision 558fcaf1 (cdmlib): updating poms for 5.15.0 branch with snapshot versions
jenkins
01:19 PM Revision 394d8d07 (cdm-dataportal): adding missing space in citation
Andreas Kohlbecker
01:07 PM Revision e5a89a58 (cdm-dataportal): ref #8134 deterministic sort order for type designations - bu...
Andreas Kohlbecker
12:52 PM Revision f639f3b7 (cdm-dataportal): ref #8134 deterministic sort order for type designations - ad...
Andreas Kohlbecker
12:52 PM Revision 04d5812b (cdm-dataportal): ref #8134 deterministic sort order for type designations
Andreas Kohlbecker
10:09 AM Revision d4e27dd5 (cdm-dataportal): adapting test to changes made in a6c4c53c
Andreas Kohlbecker
09:30 AM Revision 867d1f58 (cdm-dataportal): ref #8134 fixing missing render_type_designations()
Andreas Kohlbecker
09:06 AM Revision aab00a6d (cdmlib): ref #9078, ref #9085 fix deduplication of nom.ref. author
Andreas Müller
08:54 AM Revision 4eab6eeb (cdm-dataportal): moving methods from theme to inc file
Andreas Kohlbecker
08:36 AM Revision fcf4e915 (cdmlib): cleanup
Andreas Müller
08:36 AM Revision a9bd2165 (cdmlib): ref #9078, ref #9085 improve deduplication of teams nom.ref. authors
Andreas Müller

06/22/2020

11:46 PM Revision 45ecfdaa (cdmlib): cleanup
Andreas Müller
11:25 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Hmm, this behavior definitely needs further discussion. I do not remember that we had decided to implement it this wa... Andreas Müller
10:57 PM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the ...
However, it was somehow difficult to test this ticket as the behavior was not always reproducable. One time selecting... Andreas Müller
10:28 PM feature request #9084: Make it configurable if a Description is deleted only from the Descriptive...
Katja Luther wrote:
> Did you try this with different descriptions?
> I never got this exception, maybe you remove...
Andreas Müller
09:41 PM feature request #9084: Make it configurable if a Description is deleted only from the Descriptive...
Did you try this with different descriptions?
I never got this exception, maybe you removed the descriptionElementS...
Katja Luther
08:08 PM feature request #9084 (Feedback): Make it configurable if a Description is deleted only from the ...
When I tried to delete a description from matrix without deleting from specimen I got the following exception:
~~~...
Andreas Müller
10:52 PM Revision cab7b403 (cdmlib): fix NPE during specimen clone for matrix
Andreas Müller
10:51 PM Revision 3c2c69c6 (cdmlib): cleanup
Andreas Müller
09:06 PM Revision 42d15fca (cdmlib): add specimen to updateResult
Katja Luther
09:01 PM Revision c04426d1 (taxeditor): ref #8785:update facts view after searching
Katja Luther
08:58 PM Revision 5c9a95f8 (taxeditor): fix CCE in descriptive dataset editor
Katja Luther
08:02 PM feature request #9089 (New): Show descriptive datasets in description details view
Currently it is necessary to open the referencing objects view to know if a description is part of a descriptive data... Andreas Müller
06:29 PM bug #9088 (New): CCE (ClassCastException) adding Annotation to TextualTypeDesignation in Name-Bu...

~~~
last remote method : http://localhost:8080/remoting/name.service
last remote request client time : 2020-06-22...
Andreas Kohlbecker
06:25 PM feature request #8134: Implement verbatim type information in dataportal
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > TextualTypeDesignation are not supposed to contain validly pu...
Andreas Kohlbecker
05:04 PM feature request #8134: Implement verbatim type information in dataportal
Andreas Kohlbecker wrote:
> TextualTypeDesignation are not supposed to contain validly published type designations, ...
Andreas Müller
04:45 PM feature request #8134: Implement verbatim type information in dataportal
TextualTypeDesignation are not supposed to contain validly published type designations, therefore it makes no sense t... Andreas Kohlbecker
01:48 PM feature request #8134: Implement verbatim type information in dataportal
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The textual type designation are now at least shown in the ta...
Andreas Kohlbecker
06:18 PM bug #9087 (Closed): typedesignation/{uuid}/annotations must return pager objects
see commit:cdm-dataportal|45b496bc -> cdm_api.module which fixes the problem for #8134
Test page `reference_int/cd...
Andreas Kohlbecker
06:13 PM Revision 45b496bc (cdmlib): ref #8134 fixing missing initialization of TaonNode.statusNode and so...
Andreas Kohlbecker
06:11 PM Revision a6c4c53c (cdm-dataportal): ref #8134 dealing with web service problems returning list in...
Andreas Kohlbecker
06:09 PM Revision e26fd740 (cdmlib): ref #9078 adapt return type of service.parseName
Andreas Müller
05:30 PM Revision 60009dff (cdmlib): ref #9004 change source type to DescriptionElementSource for TaxonNod...
Andreas Müller
04:55 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon ...
The source can be edited via the taxon node wizard ("placement source") but only reference (and if a new node is crea... Andreas Müller
01:15 PM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtfu...
display of status notes, source and annotations is implemented.
Is there any way to edit source and annotations ...
Andreas Kohlbecker
04:24 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Katja Luther wrote:
> Andreas Müller wrote:
> > There is also another strange behavior. When I do "reattache" the s...
Katja Luther
10:00 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller
03:43 PM Revision 1ce6e8ce (cdm-dataportal): ref #8134 trimming text
Andreas Kohlbecker
03:43 PM Revision 6325c7ad (cdm-dataportal): ref #8134 test for TextualTypeDesignation (requires new page ...
Andreas Kohlbecker
03:09 PM Revision 4123dbbc (taxeditor): update facts view after searching
Katja Luther
02:09 PM Revision 829d7f26 (cdm-dataportal): ref #8134 render_type_designations() cleaning code
Andreas Kohlbecker
02:07 PM Revision 79904336 (cdm-dataportal): ref #8134 moving render_type_designations() to include file
Andreas Kohlbecker
02:06 PM Revision 0c720425 (cdm-dataportal): ref #8134 refactoring theme to render function
Andreas Kohlbecker
01:13 PM Revision 95e00758 (cdm-dataportal): ref #9010 showing status notes, source and annotations
Andreas Kohlbecker
11:46 AM Revision d4db3c89 (taxeditor): ref #8785: adapt to changes in method signature of mergeDescriptions
Katja Luther
11:45 AM Revision 4aa29834 (cdmlib): ref #8785: mergeDescriptions returns updateResult
Katja Luther

06/20/2020

12:56 AM Revision 4fc40f5c (cdmlib): ref #9078 add parsing for existing names (II)
Andreas Müller
11:00 AM Revision eeff4578 (taxeditor): ref #8785: fix saving of newly created descriptions for descriptiv...
Katja Luther
10:56 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Now add and delete should work. But if a specimen contains more than one description that could be used for cloning, ... Katja Luther
10:55 AM Revision 831a079e (cdmlib): ref #8785: fix saving of newly created descriptions for descriptive d...
Katja Luther
09:34 AM Revision 0020d108 (cdmlib): rf #9078 add parsing for existing names
Andreas Müller
09:33 AM Revision 8ce66ade (cdmlib): ref #9078 remove logging for deduplication
Andreas Müller
09:31 AM Revision d285f18d (cdmlib): ref #9085 improve X_OR_FIRST_NULL handling
Andreas Müller
09:23 AM bug #8959 (Closed): Moving a synonym to the homotypical group of the accepted taxon opens the con...
Now it seems to work as expected Andreas Müller
08:47 AM bug #9058 (Feedback): Hibernate loggs error when creating schema on MySQL due to failing index cr...
I copied the exception handling to a new ticket #9086.
I think the real issue of this ticket (exceptions are throw...
Andreas Müller
08:45 AM feature request #9086 (New): Throw exception during schema generation if an exception occurrs
copied from #9058
for a detailed description see there.
Different solutions exist by either finding a way to ru...
Andreas Müller
08:37 AM bug #8857 (Closed): NonUniqueObjectException when creating new taxon
That was because #9078 was set as blocker. Andreas Müller
07:50 AM bug #8857: NonUniqueObjectException when creating new taxon
I can't close the ticket because the closed status is not available Katja Luther
07:49 AM bug #8857: NonUniqueObjectException when creating new taxon
tested it with a author and reference already in database and it works like expected. Katja Luther
08:35 AM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the ...
this is done. Katja Luther
08:34 AM feature request #9085 (In Progress): Improve deduplication of parsed names
Andreas Müller
02:21 AM Revision c8f12e19 (taxeditor): cleanup
Andreas Müller

06/19/2020

12:59 AM Revision 97a2bbb9 (taxeditor): ref #8754: adapt description for delete descriptions
Katja Luther
12:57 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> So back to original issue of this ticket.
>
> The configurator now looks like
>
> ![]...
Katja Luther
07:25 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Katja Luther wrote:
>
> This depends on the rank defined in the descriptive dataset. If you do not define a max ra...
Andreas Müller
06:54 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> I watched another strange behavior about the selected taxon. I created a new DDS in rem_conf...
Katja Luther
06:51 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
I watched another strange behavior about the selected taxon. I created a new DDS in rem_conf_am and added the taxon n... Andreas Müller
05:33 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
I moved #note-22 to #8785 as it belongs to this ticket (I added it accidentely here) Andreas Müller
05:12 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
So back to original issue of this ticket.
The configurator now looks like
![](picture499-1.png)
so the user...
Andreas Müller
04:57 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Katja Luther wrote:
> I could not test it, yet, but maybe this is a problem of synchronisation between the two edito...
Andreas Müller
04:49 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> There is also another strange behavior. When I do "reattache" the specimen to the matrix the...
Katja Luther
04:40 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > now the configuration is available. plea...
Andreas Müller
04:38 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
~~There is also another strange behavior. When I do "reattache" the specimen to the matrix the old record seems to be... Andreas Müller
04:14 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> Katja Luther wrote:
> > now the configuration is available. please review
>
> Something ...
Katja Luther
03:57 PM bug #8754 (Feedback): DescriptionElements are not deleted with the Descriptive Data Set
Katja Luther wrote:
> now the configuration is available. please review
Something still is wrong here. What I did...
Andreas Müller
12:44 AM Revision 1de7515f (taxeditor): ref #8785: smaller issues in character matrix - add and remove des...
Katja Luther
11:35 PM bug #8857 (Resolved): NonUniqueObjectException when creating new taxon
With the changes for #9078 this is fixed now. Katja can you please again check and close the ticket if it works Andreas Müller
11:26 PM Revision c078cfb8 (cdmlib): ref #9085 improvements to MatchStrategyFactory and switch order of ma...
Andreas Müller
11:16 PM feature request #9085 (Closed): Improve deduplication of parsed names
Special methods have been implemented during E+M import for improved deduplication (references+authors) of parsed nam... Andreas Müller
09:39 PM Revision 8f2b3bc1 (cdmlib): ref #8785: reuse compatible description when adding specimen to chara...
Katja Luther
09:38 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> The main issue I originally wanted to test was how the deleting and adding of specimens in...
Katja Luther
06:24 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Did you save before you "reattache"?
Yes, sometimes I even did restart the TaxEditor. Almos...
Andreas Müller
05:33 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Copied from #8754#note-22
>
> There is also another strange behavior. When I do "reattach...
Katja Luther
05:31 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Copied from #8754#note-22
There is also another strange behavior. When I do "reattache" the specimen to the matrix...
Andreas Müller
05:05 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Upps sorry, I have overridden your changes accidentely. But maybe it is better to handle this in another ticket. What... Andreas Müller
05:03 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Maybe we also need a configurator here for the removal of specimens(descriptions) from the matrix. Same issue as at #... Andreas Müller
04:51 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
Katja Luther
10:37 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
I think all issues are fixed, please review. Katja Luther
10:37 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Now, when entering a value at "Specimen Filter" you sometimes get more values then when ente...
Katja Luther
10:35 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Katja Luther wrote:
> > The specimen list is loaded only the first time the dialog is opene...
Katja Luther
10:20 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Generally the layout should be improved. The "Taxon filter" and the "Specimen filter" look v...
Katja Luther
10:18 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> The layout the legend was corrupted by adding the new filter:
>
> ![](picture265-1.png)
...
Katja Luther
09:30 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> The specimen list is loaded only the first time the dialog is opened and added to a cache, the...
Andreas Müller
09:25 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Generally the layout should be improved. The "Taxon filter" and the "Specimen filter" look very different at the mome... Andreas Müller
09:24 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Now, when entering a value at "Specimen Filter" you sometimes get more values then when ente...
Katja Luther
09:20 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Now, when entering a value at "Specimen Filter" you sometimes get more values then when entering no value. This behav... Andreas Müller
09:05 AM bug #8785: Move functionality of buttons to context menu of the character matrix
The new filter should be called "Taxonomic Group" filter or "Taxonomic Subtree" filter as it filters not only on 1 ta... Andreas Müller
09:02 AM bug #8785: Move functionality of buttons to context menu of the character matrix
The layout the legend was corrupted by adding the new filter:
![](picture265-1.png)
Andreas Müller
08:58 AM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Now the nameCaches of the selected taxa are shown on top of the dialog, and a button for remov...
Andreas Müller
09:32 PM Revision 205bdec4 (taxeditor): ref #9084: add config to delete description in character matrix
Katja Luther
05:05 PM feature request #9084 (In Progress): Make it configurable if a Description is deleted only from t...
Andreas Müller
05:03 PM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the ...
copied from #8785, see also #8754#note-20
Maybe we also need a configurator here for the removal of specimens(desc...
Andreas Müller
02:29 PM bug #8593 (Duplicate): Name editor: wrong context menu for synonyms
this is the same problem as in #8959 because in the video demonstration the heterotypic synonym is moved to the homot... Katja Luther
02:19 PM Revision 079cd0bf (taxeditor): set location of login dialog to center of application
Katja Luther
01:28 PM Revision 3617f84b (taxeditor): menu issues character matrix and descriptive dataset editor
Katja Luther
11:50 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
Katja Luther wrote:
> Applied in changeset commit:taxeditor|9d01ebe78d471b0203107cc8ebaac5ead4f1b2ee.
this should...
Katja Luther
11:35 AM bug #8959 (Resolved): Moving a synonym to the homotypical group of the accepted taxon opens the c...
Applied in changeset commit:taxeditor|9d01ebe78d471b0203107cc8ebaac5ead4f1b2ee. Katja Luther
11:37 AM Revision 9d01ebe7 (taxeditor): fix #8959: fix correct focus after move syn
Katja Luther
10:39 AM bug #9081 (Closed): Handle empty Partials correctly
the code looks good and the tests work as expected, so we can close this ticket. Katja Luther
10:37 AM Revision 31bb0295 (taxeditor): ref #8785: layout issues
Katja Luther
09:56 AM Revision 5f54eb62 (taxeditor): ref #8785: fix specimen selection for no filter and layout issue
Katja Luther
09:53 AM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix ed...
Katja Luther
08:38 AM bug #8849 (Closed): NPE in synonym DetailsViewer for synonyms without accepted taxon
Andreas Müller wrote:
> Good points.
>
> I suggest to split the ticket. The NPE is fixed so this ticket can be cl...
Andreas Müller
08:37 AM bug #9083 (New): Improve authorization handling in synonym details view (and generally)
from #8849#note-7
Generally for permission checks the class CdmUserHelper should be used which provides a couple o...
Andreas Müller

06/18/2020

12:31 AM Revision 2953f2bf (cdmlib): fix failing test and cleanup
Andreas Müller
12:29 AM Revision 251dd204 (cdmlib): fix failing test and cleanup
Andreas Müller
12:21 AM Revision f7d4f55f (cdmlib): fix #9081 cleaning up tests using "00000000" (cont. 2)
Andreas Müller
12:19 AM Revision 60e7f76c (cdmlib): fix #9081 cleaning up tests using "00000000" (cont.)
Andreas Müller
12:08 AM task #9082 (In Progress): Update script for old empty Partials handling
Andreas Müller
12:08 AM task #9082 (Resolved): Update script for old empty Partials handling
Especially for Person.lifespan_end and Person.lifespan_start the problem existed. See #9081
~~~
UPDATE AgentBase ...
Andreas Müller
12:04 AM bug #9081: Handle empty Partials correctly
should be fixed. Please review. Andreas Müller
11:54 PM bug #9081 (Resolved): Handle empty Partials correctly
Applied in changeset commit:cdmlib|15f01b88c23a2d398aaa3dda81f0a6954a57da64. Andreas Müller
06:12 PM bug #9081 (Closed): Handle empty Partials correctly
Currently empty partials are stored as "00000000" in the database. This results in a situation where an hql query lik... Andreas Müller
12:02 AM Revision 359fd14e (cdmlib): cleanup
Andreas Müller
12:02 AM Revision 4c4faa00 (cdmlib): fix #9081 cleaning up tests using "00000000"
Andreas Müller
11:54 PM Revision 15f01b88 (cdmlib): fix #9081 fix handling of empty Partial during save and in Person.get...
Andreas Müller
10:38 PM feature request #4298: refresh views after changing rights
No it is the user him- or herself. So in this situation some windows might be open and functionality enabled which sh... Andreas Müller
04:28 PM feature request #4298: refresh views after changing rights
The description is not really clear.
Does the user itself changes his rights? Or the administrator?
Katja Luther
03:33 PM feature request #4298: refresh views after changing rights
Andreas Kohlbecker wrote:
> I guess that this ticket has been erroneously assigned to me.
This ticket was created...
Andreas Müller
02:05 PM feature request #4298: refresh views after changing rights
I guess that this ticket has been erroneously assigned to me. Andreas Kohlbecker
05:33 PM bug #8593: Name editor: wrong context menu for synonyms
this is still an open issue Andreas Kohlbecker
03:23 PM bug #8593 (Feedback): Name editor: wrong context menu for synonyms
Can you check if this ticket is still open beside the remaining issue described in #8959 ?
I did not have this pr...
Andreas Müller
05:14 PM bug #9058: Hibernate loggs error when creating schema on MySQL due to failing index creation
> make it possible to activate holdOnError flag in SchemaExport to allow throwing Exceptions if problems occur during... Andreas Kohlbecker
04:53 PM feature request #9078 (In Progress): Handle name parsing and deduplication on server side
There is a problem with effectively deduplicating classes having a timePeriod attribute as empty Partials are sometim... Andreas Müller
04:44 PM Revision 014ff426 (cdmlib): cleanup
Andreas Müller
04:43 PM Revision 0f9d8bd0 (taxeditor): cleanup
Andreas Müller
04:35 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
Thank you, I think we can close this ticket now. Andreas Kohlbecker
04:04 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
I added the relevant tickets Katja Luther
02:02 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
please see the last comment Andreas Kohlbecker
04:33 PM feature request #9034 (Closed): simple agent list page with filter function
Andreas Kohlbecker
04:32 PM Revision 77451b2a (cdm-dataportal): ref #9034 fixing uninitialized variable bugs and completing p...
Andreas Kohlbecker
04:22 PM Revision 99fab853 (taxeditor): ref #8785: add remove filter button and title containing the selec...
Katja Luther
04:20 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Generally this works.
> > >
> > > T...
Katja Luther
01:46 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Andreas Müller wrote:
> > Generally this works.
> >
> > There is 1 open issue which is a b...
Andreas Müller
01:26 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > ... however, the value was stored in the...
Andreas Müller
12:00 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Generally this works.
>
> There is 1 open issue which is a bit critical: it is only possi...
Katja Luther
11:45 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Andreas Müller wrote:
> > ... however, the value was stored in the DB, so maybe the error occ...
Katja Luther
08:55 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> ... however, the value was stored in the DB, so maybe the error occurred during save for AUD...
Katja Luther
08:53 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Kohlbecker wrote:
> "Das Label im Kontextmenü "Add Specimen Descriptions" ist zwar inhaltlich richtig aber "...
Katja Luther
04:10 PM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Katja Luther
04:10 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The new field seems not to be used for...
Katja Luther
01:30 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Katja Luther wrote:
> Andreas Müller wrote:
> > The new field seems not to be used for entering values in the dialo...
Andreas Müller
10:02 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Andreas Müller wrote:
> The new field seems not to be used for entering values in the dialogs for the descriptive ma...
Katja Luther
04:09 PM feature request #9080 (New): Use detailElement of quantitative data in dialog of character matrix
see #9038 comment 19 and 20 Katja Luther
04:05 PM feature request #3095 (New): protect taxa and nodes
Katja Luther
03:58 PM feature request #8968: filter Bulk editor for created by
createdBy AND updatedBy would be great! Wolf-Henning Kusber
03:56 PM feature request #8968: filter Bulk editor for created by
As the sort function for columns already exists we only need to add the createdBy (and updatedBy?) column. This shoul... Andreas Müller
03:53 PM feature request #8968: filter Bulk editor for created by
A sort function would be fine for administering user's entries by the curator. Wolf-Henning Kusber
03:49 PM feature request #8968: filter Bulk editor for created by
Needs discussion if this should be implemented for the search or for simply filtering the resulting table , see #8181... Andreas Müller
03:44 PM feature request #8181: Further features for bulk editors
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > @Andreas: can you explain what you mean by MarkerType? Should...
Andreas Müller
03:02 PM feature request #8181: Further features for bulk editors
Andreas Müller wrote:
> @Andreas: can you explain what you mean by MarkerType? Should there be a concatenated list o...
Andreas Kohlbecker
03:27 PM feature request #3683 (Closed): add /etc/default/cdmserver to debian package
can be closed Andreas Kohlbecker
03:25 PM bug #8682: cdm-server debian packages configured for jemalloc
Andreas Kohlbecker wrote:
> can be closed if
>
> 1. there are no problems on the test or int server
> 2. all `LD...
Andreas Kohlbecker
03:20 PM feature request #6878 (Closed): choose a base font for the portal and deliver it from the drupal ...
works as expected Andreas Kohlbecker
03:19 PM Revision 23c0bb1f (cdm-dataportal): ref #6878 using noto sans also for relationship symbols
Andreas Kohlbecker
01:59 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
I linked a tightly related issue: #8593 Andreas Kohlbecker
01:57 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
Katja Luther wrote:
> Andreas K., can you also check if you can reproduce this?
Yes, this is reliably reproducibl...
Andreas Kohlbecker
08:56 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
Andreas K., can you also check if you can reproduce this? Katja Luther
01:31 PM feature request #3385: install enable and configure WYSIWYG editors be default
attaching a test feature which has been created from http://edit.test/d7/phycobank/admin/structure/features/create Andreas Kohlbecker
01:21 PM feature request #3385: install enable and configure WYSIWYG editors be default
The [Features](https://www.drupal.org/project/features) apparently has all the functionality needed: "*Features focus... Andreas Kohlbecker
12:18 PM Revision 607296e9 (taxeditor): ref #8785: add button to specimen sel dialog to remove filter
Katja Luther
11:46 AM Revision 1d008f73 (cdmlib): ref #8785: fix sql exception by fixing nullSafeSet
Katja Luther
09:16 AM feature request #9032 (Closed): Implement Feature.availableFor in TaxEditor
Andreas Müller wrote:
> Looks much better now.
>
> I just wonder if it is not maybe better to handle Supports and...
Katja Luther
09:16 AM feature request #9079 (New): Move supported and available for parts of feature detail element to ...
from #9032:
I just wonder if it is not maybe better to handle Supports and Available for also as Sections (they ha...
Katja Luther
09:02 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
now the configuration is available. please review Katja Luther
08:55 AM Revision 2d8bc492 (taxeditor): ref #8785: smaller label issues
Katja Luther
08:55 AM Revision 40425911 (taxeditor): avoid widget is disposed exception when clicking on finish and open
Katja Luther

06/17/2020

07:44 PM Revision ca219b0f (cdm-dataportal): ref #9034 fixing uninitialized variable an other bug
Andreas Kohlbecker
07:12 PM feature request #8181: Further features for bulk editors
Andreas Kohlbecker wrote:
> Just a thought on additinal filter options for bulkeditors in general:
>
> the servic...
Andreas Müller
07:09 PM feature request #8181: Further features for bulk editors
ref type already exists so I kind of remove it from the above list.
As "created by" should be easy to implement so...
Andreas Müller
06:57 PM feature request #8181: Further features for bulk editors
Just a thought on additinal filter options for bulkeditors in general:
the service method `IdentifiableDaoBase.fin...
Andreas Kohlbecker
07:09 PM feature request #9022 (Closed): Implement lifespan for Person Details View
works as expected, ticket can be closed Andreas Kohlbecker
07:08 PM bug #9056: Entering a year in timeperiod element recalculates the textfield in strange way
I can't reproduce this on KDE Neon 5.19.0 Andreas Kohlbecker
06:12 PM Revision aac8a307 (taxeditor): using correct message for failed developer login attempt
Andreas Kohlbecker
05:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix
"Das Label im Kontextmenü "Add Specimen Descriptions" ist zwar inhaltlich richtig aber "Add Specimens" wäre intuitive... Andreas Kohlbecker
05:36 PM bug #9013 (Closed): Problems in TaxonNode Dialog
I can no longer reproduce these errors - closing this as fixed. Andreas Kohlbecker
05:29 PM bug #8849: NPE in synonym DetailsViewer for synonyms without accepted taxon
Good points.
I suggest to split the ticket. The NPE is fixed so this ticket can be closed.
The improved handling ...
Andreas Müller
04:42 PM bug #8849 (Feedback): NPE in synonym DetailsViewer for synonyms without accepted taxon
Generally for permission checks the class `CdmUserHelper` should be used which provides a couple of methods like `use... Andreas Kohlbecker
05:25 PM bug #8816 (Worksforme): NoSuchElementException during adding Specimens to Matrix Editor
also can't reproduce this issue Andreas Kohlbecker
01:55 PM feature request #9025 (Closed): allow for creating a new schema in empty dbs via the remote login...
Andreas Müller
12:56 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
> The "Create Schema" must not be triggered by hitting the enter key in the password or username fields
Is also fi...
Andreas Kohlbecker
12:45 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
The color issue is fixed, now. Please can someone check the look on windows? Andreas Kohlbecker
12:37 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The Points 1 - 4 from above are fixed.
> >
> > Two remaini...
Andreas Kohlbecker
12:35 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
Andreas Kohlbecker wrote:
> The Points 1 - 4 from above are fixed.
>
> Two remaining issues:
>
> * The connect...
Andreas Müller
12:25 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
The Points 1 - 4 from above are fixed.
Two remaining issues:
* The connect button however looks a bit strange b...
Andreas Kohlbecker
12:55 PM Revision aa175a7a (taxeditor): ref #9025 password field does not trigger connect button when acti...
Andreas Kohlbecker
12:42 PM Revision ec99dd06 (taxeditor): ref #9025 fixing button color issue
Andreas Kohlbecker
12:26 PM Revision 08a36bdf (taxeditor): ref #8754: adapt deleteHandling to configuration
Katja Luther
12:22 PM Revision e423ad05 (cdmlib): ref #8754: add deleteConfig for descriptiveDataset
Katja Luther
09:35 AM Revision 3f6dbb50 (taxeditor): fix problems with Nomenclatural code preference
Katja Luther
08:43 AM bug #8901 (Resolved): Deleting an aggregated description from a descriptive matrix does not delet...
Andreas Müller wrote:
> Andreas Müller wrote:
> > Is this fixed and should be reviewed?
>
> ??
sorry, yes.
Katja Luther

06/16/2020

01:38 AM Revision b6a90c36 (taxeditor): ref #9078, ref #8857 adapt TaxEditor to extended CreateTaxonDTO
Andreas Müller
01:37 AM Revision ce9a92e4 (taxeditor): cleanup
Andreas Müller
01:21 AM Revision 7d1593b0 (cdmlib): ref #9078 , ref #8857 use server side parsing in TaxonNodeServiceImpl...
Andreas Müller
01:20 AM Revision 72eb424b (cdmlib): ref #9078 first server side implementation for parsing and deduplicat...
Andreas Müller
01:19 AM Revision f3544285 (cdmlib): cleanup and remove deprecated JOIN type method
Andreas Müller
01:16 AM feature request #9078 (Closed): Handle name parsing and deduplication on server side
this is blocking #8857
requires:
* improvement of match strategies for parsed names (MatchStrategyFactory): #9...
Andreas Müller
12:24 AM Revision fee89c0b (taxeditor): cleanup
Andreas Müller
12:22 AM Revision ba4b5517 (cdmlib): cleanup
Andreas Müller
09:37 PM Revision df5baf41 (cdmlib): cleanup
Andreas Müller
09:06 PM bug #8901: Deleting an aggregated description from a descriptive matrix does not delete the aggre...
Andreas Müller wrote:
> Is this fixed and should be reviewed?
??
Andreas Müller
09:00 PM Revision f2c39369 (taxeditor): cleanup
Andreas Müller
09:00 PM Revision 8c2d9190 (taxeditor): i18n for TaxonNodeDetailElement
Andreas Müller
07:43 PM bug #9077 (New): Handle "Show details" in context menu of name editor differently
Currently the context menu's last entry is "Show details". This does not make sense as we also have the "Open in ..."... Andreas Müller
07:28 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
Andreas Müller wrote:
> The problem still exists if you directly click on the moved synonym. If you click on another...
Andreas Müller
07:25 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
Andreas K., can you also check if you can reproduce this? Andreas Müller
07:24 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
What I did in rem_conf_am:
* Open taxon "Test" in classification "Testklass"
* Move heterotypic synonym Hetero sy...
Andreas Müller
07:15 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
Strange, the problem still exists for me:
![](picture836-1.png)
Andreas Müller
11:52 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
Katja Luther wrote:
> I tried an hour ago, but the test server was not available.
I can't reproduce it with the n...
Katja Luther
11:38 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
Now the test server is up again. Can you please try again? Andreas Müller
11:16 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
I tried an hour ago, but the test server was not available. Katja Luther
11:14 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
Did you try again? If not please pass the ticket back to me and I will try again. Andreas Müller
06:22 PM bug #9024 (New): repeated startups of the managed server eats up harddisk space
In windows it is configurable but by default automatic cleaning of the temp file is switched off. If switched on it c... Andreas Müller
05:36 PM bug #9076 (Closed): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
the test portal looks ok now Andreas Kohlbecker
05:31 PM bug #9076 (Resolved): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
Applied in changeset commit:cdm-dataportal|aec9ca7defa215bd9d28320a526751741baac1ce. Andreas Kohlbecker
05:30 PM bug #9076 (In Progress): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' a...
Andreas Kohlbecker
05:30 PM bug #9076 (Closed): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
When the setting for 'Synonymy as tab' and 'Tabbed taxon page' (config/cdm_dataportal/settings/layout/taxon) are off ... Andreas Kohlbecker
05:31 PM Revision aec9ca7d (cdm-dataportal): fix #9076 fixing missing synonymie div
Andreas Kohlbecker
04:56 PM feature request #9034: simple agent list page with filter function
[Henning wrote]
Gefällt mir sehr gut!!
Vielen Dank und viele Grüße,
Henning
Andreas Kohlbecker
04:21 PM feature request #9034 (Resolved): simple agent list page with filter function
Done! Ich fand es übersichtlicher und ruhiger nach den Namensdetails eine Zeilenschaltung einzuschieben. Andreas Kohlbecker
04:14 PM feature request #9034: simple agent list page with filter function
Hallo Andreas,

vielen Dank für Deine Mail und Deinen Vorschlag. Einerseits finde ich Deinen Vorschlag gut wei...
Andreas Kohlbecker
04:32 PM Revision acd4e30a (cdmlib): ref #8785 add supportsOriginalSourceType to AggregationSourceMode
Andreas Müller
04:31 PM Revision d46ac3ea (cdmlib): Rename label for "from child to parent" AggregationMode
Andreas Müller
04:16 PM Revision 5ae6e6d1 (cdm-dataportal): ref #9034 new agent item layout
Andreas Kohlbecker
03:55 PM bug #8785: Move functionality of buttons to context menu of the character matrix
... however, the value was stored in the DB, so maybe the error occurred during save for AUD data. Andreas Müller
03:51 PM bug #8785: Move functionality of buttons to context menu of the character matrix
When changing a value (1 out of 3 exact values) I got an exception during save:
~~~
last remote method : http://t...
Andreas Müller
03:29 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
Generally this works.
There is 1 open issue which is a bit critical: it is only possible to a specimen for a taxon...
Andreas Müller
03:50 PM bug #9075 (New): Exact values in descriptive matrix label provider should be ordered
Currently they appear in non-deterministic order.
I think the best appropriate order is to order them by value, st...
Andreas Müller
03:35 PM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
The new field seems not to be used for entering values in the dialogs for the descriptive matrix. But this is the mai... Andreas Müller
09:44 AM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
looks good. Katja Luther
03:14 PM Revision 46cc150c (taxeditor): ref #9004 rename parent child relation source to placement source ...
Andreas Müller
03:06 PM Revision 181a2054 (taxeditor): cleanup
Andreas Müller
02:55 PM bug #9016 (Closed): Adding specimen without field unit fails
This works.
A related ticket that the protected titleCache of an orphaned derived unit is handled in #9074
Andreas Müller
02:53 PM bug #9074 (New): Specimen missing a collector + n° and missing a collection identifier (Barcode, ...
e.g. linking a Specimen without fieldunit which has only information in the DerivedUnit.titleCache shows "no informat... Andreas Müller
02:48 PM bug #9073 (New): Configuring the matrix view throws HTTP invoker exception
I tried to open the view configuration for the descriptive matrix
![](picture700-1.png)
and got the following e...
Andreas Müller
02:14 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
I don't exactly remember the situation out of which I wrote this tickt, but from my current point of view the solutio... Andreas Kohlbecker
11:17 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> Andreas Müller wrote:
> > Generally I have problems to understand this ticket.
> >
> > D...
Katja Luther
11:16 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> Generally I have problems to understand this ticket.
>
> Do I understand it correctly tha...
Andreas Müller
01:46 PM Revision 75b9ff9a (cdm-server): upading cdm-server launchers
Andreas Kohlbecker
01:45 PM feature request #7820 (Rejected): Add cron job for deleting cdmserver log files after a specified...
no longer needed as we are using the RollingFileAppender of lockback which deletes logs older than 30 days or if the ... Andreas Kohlbecker
01:42 PM feature request #7821 (Duplicate): Use log4j2 for cdmserver logging to avoid having a separate cr...
closing as duplicate of #7085 Andreas Kohlbecker
01:41 PM bug #7085 (Closed): cdmserver logfiles getting too big, use RollingFileAppender
implemented and tested locally, on edit-test and edit-int. Andreas Kohlbecker
01:39 PM bug #8682: cdm-server debian packages configured for jemalloc
can be closed if
1. there are no problems on the test or int server
2. all `LD_PRELOAD=/usr/lib/x86_64-linux-gnu/...
Andreas Kohlbecker
11:53 AM bug #8682: cdm-server debian packages configured for jemalloc
mainly solved!
Remaining task: adapt cdm-server documentation
After the release all `LD_PRELOAD=/usr/lib/x86_64...
Andreas Kohlbecker
11:50 AM bug #8682 (Resolved): cdm-server debian packages configured for jemalloc
Applied in changeset commit:cdm-server|bc3050782e9cc090105f1ea63d005d471c8c48f1. Andreas Kohlbecker
01:37 PM feature request #3683: add /etc/default/cdmserver to debian package
done. Ticket can be closed when there are no problems on the test and int server. Andreas Kohlbecker
01:36 PM feature request #3683 (Resolved): add /etc/default/cdmserver to debian package
Applied in changeset commit:cdm-server|2fb99eb9e93faf8769f8ea22cadb12caea3c30b1. Andreas Kohlbecker
01:35 PM Revision 2fb99eb9 (cdm-server): fix #3683 adding /etc/default/cdmserver to deb package also clean...
Andreas Kohlbecker
11:50 AM Revision bc305078 (cdm-server): fix #8682 adding libjemalloc as package dependency and setting LD...
Andreas Kohlbecker
11:35 AM bug #7189: Taxeditor connect dialog high-dpi suport
I tested with 100%, 125%, 150% and 175% on a windows machine Andreas Müller
11:34 AM bug #7189 (Closed): Taxeditor connect dialog high-dpi suport
This is generally fixed. Only issue is that the recalculation of the layout sometimes stocks in the middle while data... Andreas Müller
11:30 AM feature request #9072 (New): Layout issues temporal data details view
from #8990:
Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead having a ...
Katja Luther
11:29 AM feature request #8990 (Closed): Implement flowering periods (temporal facts) in TaxEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > There was still an NPE in the DescriptionHelper. I tried to fix t...
Katja Luther
11:22 AM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
Andreas Müller wrote:
> Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead...
Andreas Müller
11:21 AM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
An improved formatter is handled in #9071 Andreas Müller
11:18 AM feature request #8990 (Feedback): Implement flowering periods (temporal facts) in TaxEditor
Andreas Müller wrote:
> There was still an NPE in the DescriptionHelper. I tried to fix this in f266536e
This wor...
Andreas Müller
11:20 AM feature request #9071 (Resolved): Implement formatter for TimePeriod, VerbatimTimePeriod and Exte...
copied from #8990 Andreas Müller
11:06 AM feature request #9032 (Feedback): Implement Feature.availableFor in TaxEditor
Looks much better now.
I just wonder if it is not maybe better to handle Supports and Available for also as Sectio...
Andreas Müller
09:37 AM feature request #9032: Implement Feature.availableFor in TaxEditor
the layout issues are solved. Katja Luther
09:35 AM feature request #9032 (Resolved): Implement Feature.availableFor in TaxEditor
Applied in changeset commit:taxeditor|45f8176560c646e39fb6244aa33a38160a4adea9. Katja Luther
10:55 AM Revision 54f6c4ab (cdmlib): cleanup
Andreas Müller
10:55 AM Revision 130d32fa (cdmlib): ref #9004 fix transient behavior for TaxonNode.reference and TaxonNod...
Andreas Müller
10:27 AM Revision fac73107 (cdm-server): ignoring compressed log files
Andreas Kohlbecker
10:26 AM Revision 07e58903 (cdm-server): solving 'No org.apache.tomcat.InstanceManager set in ServletConte...
Andreas Kohlbecker
09:53 AM Revision 83cb55ca (taxeditor): ref #9032: label can set to bold
Katja Luther
09:37 AM Revision 45f81765 (taxeditor): fix #9032: layout issues in feature details view
Katja Luther
09:23 AM Revision cfddafff (taxeditor): ref #8990 fix NPE in getTemporalDataText (cont.)
Andreas Müller
09:19 AM Revision ac21d2ee (cdm-server): reverting resilient handling of invalid options
Andreas Kohlbecker

06/15/2020

10:58 PM Revision abb72019 (cdmlib): cleanup
Andreas Müller
10:58 PM Revision 42045036 (cdmlib): ref #9004 rename isEmpty to checkEmpty to avoid recognition as bean p...
Andreas Müller
10:05 PM feature request #9032: Implement Feature.availableFor in TaxEditor
Minor note: can we move Categorical Data up just below Supports Text Data? This is because features for Categorical D... Andreas Müller
10:03 PM feature request #9032: Implement Feature.availableFor in TaxEditor
A minor issue for the layout of the term details view
We should maybe better distinguish the supportsXXX and avail...
Andreas Müller
09:55 PM feature request #9032 (Feedback): Implement Feature.availableFor in TaxEditor
Andreas Müller
09:55 PM feature request #9032: Implement Feature.availableFor in TaxEditor
Generally it seems to work.
One issue I found:
* I changed "Orthography to be available for Taxon, not Taxon na...
Andreas Müller
06:02 PM feature request #9032: Implement Feature.availableFor in TaxEditor
Katja Luther wrote:
> No, I just found a problem.
the problem is fixed, please review.
Katja Luther
06:01 PM feature request #9032 (Resolved): Implement Feature.availableFor in TaxEditor
Katja Luther
12:48 PM feature request #9032: Implement Feature.availableFor in TaxEditor
No, I just found a problem. Katja Luther
12:12 PM feature request #9032: Implement Feature.availableFor in TaxEditor
Is this ticket for review then? Andreas Müller
11:02 AM feature request #9032: Implement Feature.availableFor in TaxEditor
Katja Luther wrote:
> the details view and the featureTree creation is implemented, but the preference page needs to...
Katja Luther
09:42 PM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead having a theses labels a... Andreas Müller
09:35 PM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
There was still an NPE in the DescriptionHelper. I tried to fix this in f266536e Andreas Müller
10:58 AM feature request #8990 (Resolved): Implement flowering periods (temporal facts) in TaxEditor
a first implementation is available, please review. Katja Luther
09:34 PM Revision 73d33afe (taxeditor): cleanup
Andreas Müller
09:31 PM Revision f266536e (taxeditor): ref #8990 fix NPE in getTemporalDataText
Andreas Müller
09:10 PM feature request #9066 (Closed): Make visiblity of Specimen List Editor menu configurable
Works as expected Andreas Müller
06:05 PM feature request #9066 (Resolved): Make visiblity of Specimen List Editor menu configurable
Applied in changeset commit:cdmlib|c3c33fc8596c94035a7d944b6d3dd70b982ea20a. Katja Luther
09:07 PM feature request #8958 (Closed): Add publication year, inReference (journal), and URI to reference...
now everything looks fine Andreas Müller
07:56 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to referen...
Katja Luther
07:56 PM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to referen...
Andreas Müller wrote:
> Great, this is looks (IMO).
>
> There is only a minor open issue: if subreference has no ...
Katja Luther
07:56 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to referen...
Applied in changeset commit:taxeditor|7cff439d088ab830363cff21695e0c8b7305d494. Katja Luther
09:04 PM feature request #9033 (Closed): Adapt TaxEditor to new TaxonNode.status
Works as expected Andreas Müller
07:50 PM feature request #9033: Adapt TaxEditor to new TaxonNode.status
Andreas Müller wrote:
> Now I got an NPE when switching from status to no status
>
the NPE is fixed, please review.
Katja Luther
07:50 PM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
Applied in changeset commit:taxeditor|eb5c6646d625eb63d4031b226ae2cd99fa7dda48. Katja Luther
08:57 PM feature request #9009: Add structure to store media metadata
Please review Andreas Müller
08:54 PM bug #9059 (Closed): Cancel taxon save does not clean the (factual data) cache
Seems to work now Andreas Müller
06:06 PM bug #9059 (Resolved): Cancel taxon save does not clean the (factual data) cache
Andreas Müller wrote:
> I got an NPE when testing this ticket together with #9038
>
the NPE is fixed.
Katja Luther
08:40 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Can you please review my changes and if ok close the ticket? Andreas Müller
08:39 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
I did some further adaptations. Some were incorrect but now I think it should work as expected (max pre-decimal numbe... Andreas Müller
07:58 PM Revision 7cff439d (taxeditor): fix #8958: fix copy&paste error
Katja Luther
07:52 PM Revision eb5c6646 (taxeditor): fix #9033: correct handling for notes when switching between statu...
Katja Luther
07:41 PM feature request #8128 (Duplicate): Add indicator for feature facts and/or vocabularies which desc...
This ticket duplicates #9027 Andreas Müller
07:27 PM feature request #9040 (New): Implement open button for ORCIDs
Katja Luther
05:57 PM feature request #9040 (Resolved): Implement open button for ORCIDs
Katja Luther
06:07 PM Revision c3c33fc8 (cdmlib): fix #9066: set default of preference to true
Katja Luther
06:02 PM Revision 8b643532 (taxeditor): fix #9040: adapt preferences to availableFor attribute of features
Katja Luther
06:01 PM bug #9070 (Resolved): Adapt preference page to feature.isAvailableFor...
this is fixed, please review. Katja Luther
11:01 AM bug #9070 (Resolved): Adapt preference page to feature.isAvailableFor...
The preference pages for facts base on vocabularies but should base on the flags isAvailableForTaxon/-TaxonName/-Occu... Katja Luther
06:00 PM Revision 5edd1fbf (cdmlib): fix #9040: implement service/persistent methods to get featureDtos fi...
Katja Luther
04:04 PM feature request #9067: [DISCUSS] Allow media to support external links not being files
WGB:
als Diskussionsbeitrag der Hinweis, dass wir in der Darstellung im Portal grundsätzlich die Unterscheidung ei...
Andreas Müller
09:02 AM feature request #9067: [DISCUSS] Allow media to support external links not being files
I actually see no benefit of the "solutions" 2 - 4 over 1.
Adding additional fields for external links is nothing ...
Andreas Kohlbecker
12:09 PM bug #5601: Creation of local database structure via remoting
Don't know if this is a better title. The database is not necessarily a **local** one. It only needs to be reachable,... Andreas Müller
10:22 AM bug #5601 (Duplicate): Creation of local database structure via remoting
So I close this ticket as duplicate. If you have an idea for a better ticket title feel free to change it. Andreas Müller
10:02 AM bug #5601: Creation of local database structure via remoting
Andreas Müller wrote:
> As the description says "can be created automatically in the same way **as it was possible i...
Andreas Kohlbecker
11:45 AM Revision 7df3e4dd (cdmlib): ref #8990: add formatter for extendedTimeperiod - minor
Katja Luther
11:43 AM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon ...
I forgot to mention that also the TaxonNode source should be shown here Andreas Müller
09:31 AM feature request #9010 (In Progress): Display taxon node status excluded, unplaced, placement doub...
thank you for pointing this out. I overlooked the additional requirement to show also status notes. Andreas Kohlbecker
11:08 AM Revision 64bfdc8f (cdmlib): ref #9004 make isEmpty XmlTransient
Andreas Müller
10:58 AM Revision c9e66e15 (taxeditor): ref #8990: use the extendedTimePeriodPartialFormatter
Katja Luther
10:56 AM Revision bfa4bcb7 (cdmlib): ref #8990: add formatter for extendedTimeperiod
Katja Luther
10:25 AM Revision bb201cf5 (cdm-server): resilient handling of invalid options
Andreas Kohlbecker
09:56 AM Revision 1f9ea18c (cdm-server): ref #7085 adding the InstanceManager explicitly to fix broken JSP...
Andreas Kohlbecker
09:11 AM bug #9024: repeated startups of the managed server eats up harddisk space
in linux systems the tmp folder is cleared during the system start up, which is a very wise strategy. In Mac OS is is... Andreas Kohlbecker
08:55 AM Revision b627e8ef (taxeditor): ref #9038 further improve BigDecimal handling in TaxEditor
Andreas Müller
08:27 AM Revision 259a7758 (cdmlib): ref #9004 change XmlTransient for TaxonNode.reference, .detail and so...
Andreas Müller
08:12 AM Revision a43cd7ed (taxeditor): cleanup
Andreas Müller
08:12 AM Revision 55937de8 (taxeditor): ref #9038 try to improve BigDecimal handling in TaxEditor
Andreas Müller

06/13/2020

11:43 AM Revision 8e582e95 (taxeditor): cleanup
Andreas Müller
11:43 AM Revision d08aa271 (taxeditor): ref #9038 try to fix regEx compile error
Andreas Müller
11:40 AM feature request #9004: Make TaxonNode.referenceForParentChildRelation an OriginalSource and renam...
Open orphanRemoval issue moved to #9069 Andreas Müller
11:35 AM feature request #9004: Make TaxonNode.referenceForParentChildRelation an OriginalSource and renam...
Rename the ticket as the primary change was the change to use OriginalSource (test implementation for #6581) Andreas Müller
11:38 AM bug #9069 (New): Remove orphan single sources
In some classes only a single source is referenced (e.g. classes implementing SingleSourcedEntityBase or TaxonName.no... Andreas Müller

06/12/2020

01:19 AM Revision 8d4275af (cdmlib): ref #9004 test CascadeType.Persist for orphanRemoval
Andreas Müller
01:08 AM bug #9024 (Feedback): repeated startups of the managed server eats up harddisk space
is it really critical if data is extracted into the tmp folder? Older data in this folder should be automatically del... Andreas Müller
10:43 PM Revision 58ed6b7d (taxeditor): ref #8990: add temporal data to editor - adapt date element
Katja Luther
10:42 PM feature request #8990 (In Progress): Implement flowering periods (temporal facts) in TaxEditor
Katja Luther
10:06 PM Revision 4513cfd5 (cdmlib): ref #6581 ,ref #9004 fix orphanRemoval for ISingleSourced
Andreas Müller
09:14 PM Revision 72b7c024 (cdm-vaadin): clean test data in SpecimenTypeDesignationWorkingSetServiceImplTe...
Andreas Müller
09:13 PM Revision 71d25f8e (cdm-vaadin): cleanup
Andreas Müller
09:07 PM Revision fdf36f4e (cdmlib): ref #6581 ,ref #9004 fix preliminary SingleSourcedEntityBase class hi...
Andreas Müller
09:00 PM Revision cf6aefdd (cdmlib): ref #6581 ,ref #9004 fix preliminary SingleSourcedEntityBase class hi...
Andreas Müller
08:27 PM Revision 743e8d06 (cdm-vaadin): update vaadin test H2 to v5.15.2
Andreas Müller
08:26 PM Revision 17f6ab2d (taxeditor): update TaxEditor test H2 to v5.15.2
Andreas Müller
08:23 PM feature request #9004 (Resolved): Make TaxonNode.referenceForParentChildRelation an OriginalSourc...
Applied in changeset commit:cdmlib|1f1f7ea103177a09f739fe1808def0261f1ea424. Andreas Müller
08:23 PM Revision b806219d (cdmlib): update remote-webapp test H2 to v5.15.2
Andreas Müller
08:19 PM Revision 149ff443 (cdmlib): ref #6581 ,ref #9004 fix Reference2SourceMover
Andreas Müller
08:05 PM Revision cb29fec9 (cdmlib): cleanup
Andreas Müller
08:05 PM Revision 1f1f7ea1 (cdmlib): ref #6581 , fix #9004 update script for TaxonNode.source and some fixes
Andreas Müller
08:05 PM Revision af51bfe5 (cdmlib): ref #8978 add BigDecimalUserType to handled Usertypes in CdmGenericDa...
Andreas Müller
08:05 PM Revision 03e4c253 (cdmlib): ref #6581 add "source" to Classification, TypeDesignation, Relationsh...
Andreas Müller
08:05 PM Revision a43ff87f (cdmlib): cleanup
Andreas Müller
08:05 PM Revision 046711ec (cdmlib): ref #6581 checkSource uses OriginalSource.isEmpty for nomenclaturalSo...
Andreas Müller
08:05 PM Revision 027f931b (cdmlib): ref #9004, ref #6581 link TaxonNode to OriginalSource, not Reference ...
Andreas Müller
08:05 PM Revision cbdcc8dd (cdmlib): ref #9004, ref #6581 add isEmpty to OriginalSource and super classes
Andreas Müller
08:05 PM Revision 56a54a09 (cdmlib): ref #9067 preliminary added link attribute to Media to support soluti...
Andreas Müller
08:05 PM Revision 6f5009a3 (cdmlib): cleanup
Andreas Müller
08:05 PM Revision 13cb8251 (cdmlib): ref #9064 add ExternalLink to IdentifiableEntity
Andreas Müller
05:26 PM Revision 6c9baadc (taxeditor): ref #8990: add temporal data to editor
Katja Luther
05:23 PM Revision 683f5cd1 (taxeditor): fix NPE in factualDataPart
Katja Luther
05:18 PM bug #9059 (Feedback): Cancel taxon save does not clean the (factual data) cache
Andreas Müller
05:18 PM bug #9059: Cancel taxon save does not clean the (factual data) cache
I got an NPE when testing this ticket together with #9038
~~~
last remote method : http://localhost:50405/remotin...
Andreas Müller
05:15 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Numbers with >9 digits before the decimal sign are still allowed. I adapted the regex accordingly.
Also incorrect ...
Andreas Müller
05:09 PM Revision e00b2687 (taxeditor): ref #9038 fix handling of null values for StatisticalMeasurementVa...
Andreas Müller
05:08 PM Revision 5c875358 (taxeditor): ref #9038 slightly adapted the regEx for StatisticalMeasurementVal...
Andreas Müller
04:38 PM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to referen...
Great, this is looks (IMO).
There is only a minor open issue: if subreference has no date data and the inreference...
Andreas Müller
03:38 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
now, the string representation is added if the year differs from the string representation of the publication date. Katja Luther
03:36 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to referen...
Applied in changeset commit:taxeditor|20c5d67db28aeffddf4445a67d74c7e9d1aea10c. Katja Luther
04:24 PM bug #9063 (Closed): Detailsview for MediaSpecimen broken
works as expected Andreas Müller
04:22 PM feature request #9068 (New): Parser for ExtendedTimePeriods
e.g. for phenology data like (Apr)-May-July-(Aug) or (4)-5-7-(8) Andreas Müller
04:08 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
Now I got an NPE when switching from status to no status
~~~
last remote method : http://localhost:49511/remoting...
Andreas Müller
04:03 PM feature request #9066 (Feedback): Make visiblity of Specimen List Editor menu configurable
This works as expected. Only I think the default value should maybe be "enabled". This is more according to our defau... Andreas Müller
12:31 PM feature request #9066: Make visiblity of Specimen List Editor menu configurable
this should be fixed. please review. Katja Luther
12:29 PM feature request #9066 (Resolved): Make visiblity of Specimen List Editor menu configurable
Applied in changeset commit:taxeditor|a0257f6e93d6a598489c23c4d84868253e4cb82e. Katja Luther
11:21 AM feature request #9066 (Closed): Make visiblity of Specimen List Editor menu configurable
As we do have the Specimen Tree Editor now the Specimen List Editor is not really needed anymore. Therefore it may ma... Andreas Müller
03:52 PM bug #9060 (Closed): NPE in termsearch
works as expected Andreas Müller
03:41 PM feature request #9064 (Resolved): Add ExternalLinks to IdentifiableEntities
Andreas Müller
03:39 PM Revision 20c5d67d (taxeditor): fix #8958: add string representation of publication date if it dif...
Katja Luther
02:10 PM feature request #9067 (In Progress): [DISCUSS] Allow media to support external links not being files
Andreas Müller
02:10 PM feature request #9067: [DISCUSS] Allow media to support external links not being files
I preliminary added an attribute link (ExternalLink) to Media class to be able to immediately support solutions 3 or ... Andreas Müller
01:57 PM feature request #9067 (In Progress): [DISCUSS] Allow media to support external links not being files
The current handling of media expects that links stored in Media(RepresentationPart) are media files or can be opened... Andreas Müller
01:16 PM feature request #9031 (Closed): Adapt CdmLightExport to new TaxonNode.status
checked the cdmlight result and the doubtful flag is correctly set. Katja Luther
12:41 PM feature request #9031 (Resolved): Adapt CdmLightExport to new TaxonNode.status
Katja Luther
12:40 PM feature request #9031 (New): Adapt CdmLightExport to new TaxonNode.status
Andreas Müller wrote:
> WGB:
>
> um die Kompatibilität zu gewährleisten, wäre mir hier die zusätzliche Einfühurun...
Katja Luther
12:40 PM feature request #9031 (Resolved): Adapt CdmLightExport to new TaxonNode.status
Applied in changeset commit:cdmlib|38adedb9c022a407c44338aa1798051015b46321. Katja Luther
12:42 PM Revision d4c861e5 (cdmlib): fix #9031: add doubtful column to taxon table
Katja Luther
12:41 PM Revision 38adedb9 (cdmlib): fix #9031: add doubtful column to taxon table
Katja Luther
12:31 PM Revision 39ffe267 (cdmlib): ref #9065: add preference predicate for specimen list editor
Katja Luther
12:26 PM Revision a0257f6e (taxeditor): fix #9066: visibility of specimen list editor configurable
Katja Luther
11:18 AM feature request #9065 (Closed): Add derived unit media to DerivedUnitFacade details view
For the workflow of adding typification or any other specimen data to a taxon/name it is often necessary to add also ... Andreas Müller
09:21 AM feature request #9032 (In Progress): Implement Feature.availableFor in TaxEditor
the details view and the featureTree creation is implemented, but the preference page needs to be adapted, because th... Katja Luther
08:58 AM bug #9016: Adding specimen without field unit fails
Andreas Müller wrote:
> so I guess we can put it to resolved?
yes, please review
Katja Luther
08:43 AM bug #9016 (Resolved): Adding specimen without field unit fails
so I guess we can put it to resolved? Andreas Müller
08:47 AM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtfu...
On the above test page I could not find any example with status **notes**. Is this implemented already? If yes, is th... Andreas Müller

06/11/2020

01:03 AM feature request #9064 (Closed): Add ExternalLinks to IdentifiableEntities
Andreas Müller
11:02 PM bug #9016: Adding specimen without field unit fails
This is fixed. For example for Aporocactus flagelliformis (L.) Lem. in caryophyllales_spp there are two specimen with... Katja Luther
10:59 PM Revision 0e5f03a0 (cdmlib): avoid cycle in loadFieldUnitDto
Katja Luther
07:41 PM Revision 51788caf (cdmlib): ref #9032: add FeatureDto - continue
Katja Luther
07:24 PM Revision 8a44985c (cdmlib): avoid cycle in getFieldUnitDto
Katja Luther
07:22 PM Revision 50d185e6 (cdmlib): avoid NullPointerExceptions
Katja Luther
07:19 PM Revision 05771712 (cdmlib): ref #8857: adapt handling of status notes while taxon creation
Katja Luther
07:16 PM Revision 62d28a57 (cdmlib): ref #9032: add FeatureDto
Katja Luther
07:12 PM Revision 5f19340f (taxeditor): handle terms without vocabulary
Katja Luther
07:08 PM Revision 7cbd337d (taxeditor): ref #9032: adapt featureTree creation to isAvailableFor
Katja Luther
05:10 PM bug #5601: Creation of local database structure via remoting
As the description says "can be created automatically in the same way **as it was possible in standalone**" .
And " ...
Andreas Müller
05:08 PM Revision 5499d5e4 (cdmlib): ref #9032: fix isAvailableForTaxon
Katja Luther
05:02 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
difficult to say. Maybe we can put the result of toString in brackets behind the year, if and only if the result diff... Andreas Müller
12:34 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
so I would keep it like it is? Katja Luther
02:11 PM Revision 25c76819 (taxeditor): ref #9032: add available for in feature details view
Katja Luther
12:33 PM bug #8806 (Worksforme): Multiple representations problem on saving Desriptive Data Set
this seems to be fixed with one of the other fixes in character matrix and descriptive dataset editor Katja Luther
12:30 PM Revision ddb074af (taxeditor): ref #8785: fix enable/disable sourcetype selection
Katja Luther
12:29 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Is this ticket ready for review or are there open issues (beside the known PK-Generation iss...
Katja Luther
12:27 PM Revision e895826c (cdm-server): ref #7085 better logging configuration and improved init script
Andreas Kohlbecker
12:27 PM bug #9029 (Closed): Adapt character matrix to using dtos instead of whole cdm entities
this is fixed. Katja Luther
12:05 PM Revision b7797c35 (taxeditor): ref #9033: handling of status notes
Katja Luther
12:04 PM bug #9063: Detailsview for MediaSpecimen broken
please review. Katja Luther
12:00 PM bug #9063 (Resolved): Detailsview for MediaSpecimen broken
Applied in changeset commit:taxeditor|c198e9650016b7456fc0d12d3cdda3f1526cb7c0. Katja Luther
11:59 AM bug #9063 (Closed): Detailsview for MediaSpecimen broken
The detailsview for MediaSpecimen are broken. Katja Luther
12:03 PM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
now the notes are removed, but remembered till the wizard is closed and the taxon node saved. please review. Katja Luther
12:02 PM Revision c198e965 (taxeditor): fix #9063: fix details view for media specimen
Katja Luther
09:40 AM Revision 93078a32 (cdmlib): ref #9060: check whether termtype is null in term search
Katja Luther

06/10/2020

11:59 PM Revision 50b59f77 (cdmlib): cleanup
Andreas Müller
11:09 PM Revision 66f2a16f (cdmlib): fix #9009 fixing test schemas for MediaMetaData
Andreas Müller
10:42 PM Revision b3085974 (taxeditor): ref #9005 , ref #9036 remove flags from TaxonNode in TaxEditor tes...
Andreas Müller
10:25 PM Revision b4dd2f63 (cdm-server): adapting jsp to removal of JvmManager.getMetaSpaceUsage()
Andreas Kohlbecker
05:43 PM Revision 8881fca1 (cdm-server): ref #7085 adapting debian package - 2
Andreas Kohlbecker
05:39 PM Revision 5544ff88 (cdm-vaadin): update vaadin test H2
Andreas Müller
05:38 PM feature request #9009 (Resolved): Add structure to store media metadata
Applied in changeset commit:cdmlib|72032e8369286b8e52207a4ed1ed0443e416b72a. Andreas Müller
02:57 PM feature request #9009 (In Progress): Add structure to store media metadata
Andreas Müller
05:37 PM Revision ee0f2cda (cdmlib): update remote-webapp test H2
Andreas Müller
05:37 PM Revision 8147e611 (cdmlib): fix #9009 add MediaMetaData (cont.)
Andreas Müller
05:37 PM Revision c4d4c070 (cdmlib): cleanup and version handling
Andreas Müller
05:37 PM Revision 72032e83 (cdmlib): fix #9009 add MediaMetaData
Andreas Müller
05:37 PM Revision dc73d376 (cdmlib): ref #9036, ref #9037 remove old boolean columns
Andreas Müller
05:35 PM Revision e6af104c (taxeditor): update TaxEditor test H2
Andreas Müller
04:49 PM Revision 0c5f74e6 (cdm-server): ref #7085 adapting docker files and debian package to changes
Andreas Kohlbecker
04:46 PM task #9062 (Resolved): Remove StatisticalMeasurementValue.value_old
To finalize #8978 Andreas Müller
04:00 PM Revision e1944271 (cdm-server): ref #7085 removing obsolete attribute which is no longer used in ...
Andreas Kohlbecker
03:59 PM Revision 20884bdb (cdmlib): ref #7085 removing obsolete code from LoggingConfigurer
Andreas Kohlbecker
03:29 PM Revision 67d0c188 (cdm-server): renaming remote debug launcher
Andreas Kohlbecker
03:28 PM Revision 9526e8ec (cdm-server): ref #7085 adapting ide launch configs
Andreas Kohlbecker
03:23 PM Revision 72ddab96 (cdm-server): ref #7085 using logback MDC for centralized logging into a rollin...
Andreas Kohlbecker
01:49 PM task #9037 (Resolved): Remove old Feature.supportedXXX columns
Andreas Müller
01:49 PM task #9036 (Resolved): Remove old TaxonNode.unplaced/doubtful/excluded columns
Andreas Müller
01:21 PM Revision 5860ccc6 (cdmlib): minor
Andreas Müller
01:20 PM Revision 9a666f9e (cdmlib): ref #9061 a very first try to create an import analyzer framework (wi...
Andreas Müller
01:15 PM bug #9061 (New): Create analyze framework for CDM Excel imports
This framework should allow to analyze import data before running the import.
This should include
* analyzeWork...
Andreas Müller
01:02 PM Revision e71582e2 (cdmlib): ref #9041 improve AltitudeExcelImport
Andreas Müller
12:54 PM Revision e765eb50 (taxeditor): cleanup
Andreas Müller
12:54 PM bug #5710 (Feedback): Changing the database connection must reset all caches
This is not yet fixed as we watched in the past multiple times that switching between instances created serious probl... Andreas Müller
12:48 PM Revision fdb1753a (taxeditor): ref #5710 run term reset on all Term classes
Andreas Müller
12:48 PM Revision 2a2b894f (taxeditor): cleanup
Andreas Müller
12:02 PM feature request #9038 (Resolved): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
now the entered text is checked by a regular expression, please review. Katja Luther
12:01 PM Revision 74c3df2a (taxeditor): fix #9060: fix NPE in term search
Katja Luther
11:59 AM bug #9060: NPE in termsearch
this should be fixed, please review Katja Luther
11:58 AM bug #9060 (Resolved): NPE in termsearch
Applied in changeset commit:taxeditor|74c3df2a4568e1e35a994b99443381d24b32f0ea. Katja Luther
11:56 AM bug #9060 (Closed): NPE in termsearch
In term search throws NPE:
~~~ text
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/rem...
Katja Luther
11:56 AM Revision d002d872 (taxeditor): ref #9038: check value with regex if fit in BigDecimal
Katja Luther
10:18 AM Revision c21683a2 (cdmlib): cleanup
Andreas Müller
10:17 AM task #6021 (Rejected): Add 'mention' functionality
Andreas Kohlbecker
09:56 AM task #6008: Fix broken UTF-8 characters
This is still an open issue and should be fixed Andreas Kohlbecker
09:55 AM bug #6007 (Worksforme): Redmine: Wiki tables are not correctly mapped to new syntax
many tables have been fixed manually, so there is no more need for general action on this topic.
The above linked...
Andreas Kohlbecker
09:40 AM bug #5601 (Feedback): Creation of local database structure via remoting
Andreas Müller wrote:
> This is probably fixed with #9025 . Still need to test if it really works with H2.
So thi...
Andreas Kohlbecker
09:30 AM Revision be22ce7d (taxeditor): fix #9059: clear featureNodeContainerCache when closing NameEditor
Katja Luther
09:29 AM bug #9059: Cancel taxon save does not clean the (factual data) cache
this should be fixed, please review. Katja Luther
09:28 AM bug #9059 (Resolved): Cancel taxon save does not clean the (factual data) cache
Applied in changeset commit:taxeditor|be22ce7df518ffa44a2ac886d8b4f84fd4497227. Katja Luther
08:37 AM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
mail WB:
Hello,
my use cases for display of the publication year right now are
(i) the selection of nom. referen...
Katja Luther

06/09/2020

01:44 AM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to referen...
Generally this works now. I only wonder if it is really wanted to only show the year. In case of a freetext date noth... Andreas Müller
10:25 AM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to referen...
Applied in changeset commit:taxeditor|93bca431d69ab3aab0080702d425bc1523cbf0f1. Katja Luther
01:38 AM bug #8903 (Closed): Remember expansion state in factual data view
works now Andreas Müller
11:20 AM bug #8903 (Resolved): Remember expansion state in factual data view
this should be fixed now. Katja Luther
01:35 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Please be aware of #9059 when testing this Andreas Müller
01:20 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Another open issue:
if the scale or the precision is not according to the possible precisions/scales the data is n...
Andreas Müller
01:07 AM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Katja Luther wrote:
> now the incorrect state is not cleared, but the value is not stored. I had a look how it is ha...
Andreas Müller
02:02 PM feature request #9038 (Resolved): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Changed from DefaultQuantitativeDescriptionBuilder to QuantitativeDataFormatter to create the label string. If the ha... Katja Luther
01:34 AM bug #9059 (Closed): Cancel taxon save does not clean the (factual data) cache
What I did:
* open a taxon in name editor
* change an existing fact
* close name editor without saving
* reopen...
Andreas Müller
12:40 AM bug #5601: Creation of local database structure via remoting
This is probably fixed with #9025 . Still need to test if it really works with H2. Andreas Müller
11:54 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
Now existing notes are not deleted if the status is set to null. This is the typical problem that you may not want to... Andreas Müller
10:15 AM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
Andreas Müller wrote:
> This is mostly fixed. 2 remaining issues:
>
> * rename label "status" to "placement stat...
Katja Luther
11:36 PM Revision 88d9400d (cdmlib): cleanup
Andreas Müller
11:35 PM bug #9058 (Resolved): Hibernate loggs error when creating schema on MySQL due to failing index cr...
Andreas Müller
04:20 PM bug #9058: Hibernate loggs error when creating schema on MySQL due to failing index creation
Some further links:
* https://stackoverflow.com/questions/46156953/how-to-resolve-specified-key-was-too-long-max-...
Andreas Müller
03:59 PM bug #9058 (In Progress): Hibernate loggs error when creating schema on MySQL due to failing index...
Strange is that on some systems this is only logged as warning while others do throw an exception. I did not yet find... Andreas Müller
11:34 AM bug #9058 (Closed): Hibernate loggs error when creating schema on MySQL due to failing index crea...
Errors are like:
~~~
ERROR [main][or.hi.to.hb.SchemaExport:484] - HHH000389: Unsuccessful: create index agentTitl...
Andreas Müller
10:38 PM feature request #8464: Make AuthorityBases unique
In #9058 a very similar problem was solved. For doing the same thing for this index (which is a unique index not a si... Andreas Müller
10:24 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
Yes, the refactoring was not fully ready. Can you please try again if the above problems still appear? Andreas Müller
05:10 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
another problem:
4) Taxeditor SNAPSHOT version: Open connect dialog, The dialog initially tries to connect the **d...
Andreas Kohlbecker
03:55 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
reviewing your changes I found the following issues:
1) In case of an empty DB the following notification is shown...
Andreas Kohlbecker
10:22 PM Revision 7c5d32fa (taxeditor): adapting layout in RemotingLoginDialog
Andreas Müller
09:23 PM Revision bb9cba6b (taxeditor): ref #9025 improve localhost mgd. handling (cont.)
Andreas Müller
07:33 PM Revision 3b8b41d9 (taxeditor): cleanup
Andreas Müller
06:31 PM Revision e1aeb4ac (taxeditor): ref #9025 improve localhost mgd. handling (cont.)
Andreas Müller
06:21 PM bug #4300 (Worksforme): Authority form does not work under Windows
Operation Checkboxes in the Authority Form do now work in windows 10.
I have no idea how and when this was fixed, ...
Andreas Kohlbecker
06:02 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
from the diagrams it really looks like this problem is fixed. Can you please link the `rowWrappers`-Ticket with this ... Andreas Kohlbecker
05:55 PM bug #9020 (Closed): add default role Allow_for_all_taxa (TAXONNODE.[CREATE,READ,UPDATE,DELETE])
The new PermissionGroup has been created in all old databases on edit-int, so this issue is fully solved. Andreas Kohlbecker
04:56 PM bug #7189 (Resolved): Taxeditor connect dialog high-dpi suport
I consider this as fixed, please review. Andreas Kohlbecker
03:24 PM bug #7189: Taxeditor connect dialog high-dpi suport
I think we just should remove all this programmatic setting of font sizes as they are centrally managed via the setti... Andreas Kohlbecker
03:16 PM bug #7189: Taxeditor connect dialog high-dpi suport
Im code ist mir aufgefallen dass Cherian die Ubuntu Fontfamilie verwendet. ich nehme an um die Schriftgröße setzen zu... Andreas Kohlbecker
11:14 AM bug #7189: Taxeditor connect dialog high-dpi suport
Andreas Kohlbecker wrote:
> this issue is mainly fixed. Only the width of the comboboxes is a bit too wide.
>
> *...
Katja Luther
04:49 PM Revision 20f5abe9 (taxeditor): ref #7189 resetting remote login dialog to default font sizes
Andreas Kohlbecker
04:49 PM Revision 592cf090 (taxeditor): project setup running faster without integration tests
Andreas Kohlbecker
04:22 PM Revision 15bf6961 (cdmlib): fix #9058 fix failing index creation for ordinary MySQL key indexes a...
Andreas Müller
04:22 PM Revision 9e1278e0 (cdmlib): minor
Andreas Müller
04:12 PM bug #8662 (Closed): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon i...
Andreas Müller wrote:
> If the tree list is empty it works now as expected.
>
> >Auch wenn Taxa existieren, wird ...
Katja Luther
03:02 PM feature request #9023 (Closed): option to start cdm webapp with hibernate.hbm2ddl.auto = create
this works now as expected Andreas Kohlbecker
03:00 PM bug #8994 (Closed): universal image viewer fails loading libs when clean urls is disabled
tested on the test server and no problems found. Andreas Kohlbecker
02:55 PM feature request #9034: simple agent list page with filter function
Suggestion for a more compact layout:
~~~
Li, Y. [Yang Li] , fl. 2018 (Family name: Li, Given name: Yang) https:/...
Andreas Kohlbecker
02:47 PM Revision de12b95b (cdm-dataportal): ref #9010 changing label to 'Placement status' - adapting tests
Andreas Kohlbecker
02:34 PM feature request #9010 (Closed): Display taxon node status excluded, unplaced, placement doubtful ...
All suggested improvements are now implemented.
I've chosen to keep the label and to replace "Classificatorical stat...
Andreas Kohlbecker
02:31 PM Revision 31bb0452 (cdm-dataportal): ref #9010 changing label to 'Placement status'
Andreas Kohlbecker
02:29 PM Revision fe169cb6 (cdm-dataportal): ref #9010 taxon node status only for taxon general and synony...
Andreas Kohlbecker
02:20 PM Revision e6381e99 (taxeditor): ref #9038: use QuantitativeDataFormatter for formating the label
Katja Luther
02:02 PM Revision 1b62dc9a (cdmlib): revert changes in DefaultDescriptionBuilder
Katja Luther
01:57 PM Revision b339aef7 (cdm-dataportal): ref #6878 switching theme to noto sans and mono - compiling s...
Andreas Kohlbecker
01:56 PM feature request #6878 (Resolved): choose a base font for the portal and deliver it from the drupa...
* Umstellen des zen_dataportal themes auf Noto Sans - DONE
* Installation der dazu passenden Noto Mono - DONE
* En...
Andreas Kohlbecker
01:55 PM Revision f758df66 (cdmlib): ref #9038: fix formatter for exact values
Katja Luther
01:53 PM Revision 1fde1200 (cdm-dataportal): ref #6878 switching theme to noto sans and mono
Andreas Kohlbecker
11:19 AM bug #8954 (Closed): Details and Supplemental Data View do not save the expansion state of section...
OK, I moved the factual data issue to a new ticket #9057 Andreas Müller
10:34 AM bug #8954: Details and Supplemental Data View do not save the expansion state of sections again
Andreas Müller wrote:
> For the supplemental data view and the details view the behavior seems to be fixed.
>
> D...
Katja Luther
11:17 AM feature request #9057 (New): Remember expansion state in factual data view when changing focus
The details view and the supplemental data view remember their expansion state when the focus changes. This is not ye... Andreas Müller
11:12 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Is this ticket ready for review or are there open issues (beside the known PK-Generation issues which we should move ... Andreas Müller
10:56 AM bug #8785: Move functionality of buttons to context menu of the character matrix
the key generation is also moved to the context menu and the buttons are removed now. The funtionality of key generat... Katja Luther
10:56 AM Revision 59d57d1a (taxeditor): revert removed Element import
Andreas Müller
10:55 AM Revision 4649a39b (taxeditor): ref #8785: move generation of polytomous key to context menu
Katja Luther
10:27 AM Revision 93bca431 (taxeditor): fix #8958: show year of the inreference if no publication year is ...
Katja Luther
10:16 AM Revision 6bc0bc7f (taxeditor): ref #9033: adapt labels
Katja Luther
09:03 AM bug #9047 (Closed): Search does not return orphaned synonyms
Katja Luther
03:04 AM Revision b69e7618 (taxeditor): cleanup
Andreas Müller
02:31 AM Revision 74b3870f (taxeditor): cleanup
Andreas Müller
02:31 AM Revision 07a97068 (taxeditor): ref #9025 improve localhost mgd. handling (cont.)
Andreas Müller
02:20 AM Revision 318ecd36 (taxeditor): ref #7432 show default login data only if server is localhost mgd.
Andreas Müller
02:19 AM feature request #7432 (In Progress): Show default login only if the account has not been changed
Implemented now that default login is shown only for localhost mgd. (v 5.15) Andreas Müller
02:13 AM Revision cd900bac (taxeditor): cleanup
Andreas Müller
02:12 AM Revision 5a20c932 (taxeditor): ref #9025 improve localhost mgd. handling for schema create and up...
Andreas Müller

06/08/2020

04:26 PM Revision 8034ad47 (taxeditor): revert unwanted RemotingLoginDialog changes
Andreas Müller
04:25 PM Revision 40a41f9f (taxeditor): cleanup
Andreas Müller
04:17 PM feature request #9010 (In Progress): Display taxon node status excluded, unplaced, placement doub...
Andreas Müller wrote:
> On the taxon page in the tabbed version I would move the text above the tabs (immediately be...
Andreas Kohlbecker
04:11 PM Revision 5d5e74b3 (taxeditor): ref #7189 fixing layout issues with empty cells in grid
Andreas Kohlbecker
03:37 PM feature request #9022 (Resolved): Implement lifespan for Person Details View
Katja Luther
03:35 PM feature request #9022 (In Progress): Implement lifespan for Person Details View
The lifespan is added to the details view of persons, this is fixed, but there is a general problem with the time per... Katja Luther
03:34 PM bug #9056 (New): Entering a year in timeperiod element recalculates the textfield in strange way
see #9022 Katja Luther
03:24 PM Revision 4f8dbab4 (taxeditor): ref #9022: add lifespan to person detail element
Katja Luther
02:44 PM Revision 65e24b3f (cdm-server): remove PERM_GEN_SPACE handling as we are only using Java8 or high...
Andreas Müller
02:43 PM Revision ea1f5604 (cdm-server): cleanup
Andreas Müller
02:22 PM bug #8857 (Feedback): NonUniqueObjectException when creating new taxon
Andreas Müller
01:57 PM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Katja Luther wrote:
> The label issue is caused by the DefaultQuantitativeDescriptionBuilder because exact values ar...
Andreas Müller
11:28 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
now the incorrect state is not cleared, but the value is not stored. I had a look how it is handled for urls and the ... Katja Luther
10:20 AM feature request #9038 (In Progress): Adapt TaxEditor to use BigDecimal for StatisticalMeasurement...
The label issue is caused by the DefaultQuantitativeDescriptionBuilder because exact values are not handled. Katja Luther
01:56 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
I can't reproduce it when starting from workspce, I will try it again with nightly build. Katja Luther
10:47 AM bug #8959 (Feedback): Moving a synonym to the homotypical group of the accepted taxon opens the c...
Andreas Müller
01:49 PM bug #9047: Search does not return orphaned synonyms
Katja Luther wrote:
> ah, you are right, but then I think it should be "LEFT JOIN s.acceptedTaxon as t".
no the t...
Andreas Müller
01:45 PM bug #9047: Search does not return orphaned synonyms
Andreas Müller wrote:
> Katja Luther wrote:
> > I think the left join is not necessary because only the id of the s...
Katja Luther
11:29 AM bug #9047 (Resolved): Search does not return orphaned synonyms
Katja Luther wrote:
> I think the left join is not necessary because only the id of the synonyms/taxa are collected ...
Andreas Müller
09:55 AM bug #9047 (Feedback): Search does not return orphaned synonyms
I think the left join is not necessary because only the id of the synonyms/taxa are collected in the sql query, but t... Katja Luther
01:42 PM Revision 337ce83b (cdm-vaadin): adapt vaadin to new package structure for persistence.permission
Andreas Müller
01:40 PM Revision c41ac60d (taxeditor): adapt TaxEditor to new package structure for persistence.permissio...
Andreas Müller
12:55 PM Revision 2c3a8489 (taxeditor): cleanup
Andreas Müller
12:44 PM Revision 376b705d (cdmlib): remove "hibernate" from permission packages (cont.)
Andreas Müller
12:38 PM Revision afbe7dc1 (cdmlib): remove deprecated constant from DataSourceConfigurer
Andreas Müller
12:37 PM Revision 314ef479 (cdmlib): cleanup
Andreas Müller
12:37 PM Revision 7801652a (cdmlib): ref #9038 move DescriptionBuilder to model.format
Andreas Müller
12:09 PM Revision 2057ea02 (cdmlib): remove "hibernate" from permission packages
Andreas Müller
12:09 PM Revision 8126fe37 (cdmlib): cleanup
Andreas Müller
11:22 AM Revision 3d126815 (taxeditor): ref #9038: do not set big decimal value to 0.0 if field is cleared
Katja Luther
11:01 AM Revision 95c53d84 (cdmlib): ref #9038: add exact value to DefaultQuantitativeDescriptionBuilder
Katja Luther
09:51 AM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
I am currently reviewing this issue (and implementing some further improvements) Andreas Müller
09:43 AM bug #9052 (Closed): NPE in name details view for incomplete name relationships
works. Katja Luther

06/07/2020

05:05 PM Revision 26fa5566 (cdm-server): cleanup
Andreas Müller
04:52 PM Revision 134010c7 (cdm-vaadin): set maven min prerequisites to 3.2.3
Andreas Müller
04:51 PM Revision d74bd173 (taxeditor): set maven min prerequisites to 3.2.3
Andreas Müller
04:49 PM Revision 6a382ddb (cdmlib): set maven min prerequisites to 3.2.3
Andreas Müller
12:53 PM Revision d01ab6ad (taxeditor): cleanup
Andreas Müller

06/05/2020

11:31 PM Revision d60221b5 (taxeditor): rename CdmServerUtils, CdmServerException and CdmEmbeddedServerExc...
Andreas Müller
09:10 PM Revision 0593eae4 (taxeditor): cleanup
Andreas Müller
09:06 PM Revision 9e11ba43 (taxeditor): use new non-test version of SecurityExceptionUtils in MessagingUtils
Andreas Müller
08:52 PM Revision db551522 (cdmlib): make SecurityExceptionUtils available in non-test environments (requi...
Andreas Müller
08:46 PM Revision 5e6cda43 (cdmlib): cleanup
Andreas Müller
07:53 PM Revision cc2d6de7 (taxeditor): remove cdmlib-test from build.properties
Andreas Müller
07:50 PM Revision 752d17aa (taxeditor): remove cdmlib-test from MANIFEST
Andreas Müller
07:50 PM Revision 2661173a (taxeditor): cleanup
Andreas Müller
07:40 PM Revision d5f33b4c (taxeditor): minor
Katja Luther
07:39 PM Revision f8c40685 (taxeditor): ref #8785: adapt aggregation wizard, add aggregation to context mennu
Katja Luther
07:04 PM Revision 930a6a58 (taxeditor): remove some dependencies from taxeditor.cdmlib/pom.xml
Andreas Müller
06:33 PM Revision d503eb16 (taxeditor): remove unitils from TaxEditor cdmlib dependencies as they are nee...
Andreas Müller
06:13 PM Revision 0510635b (cdmlib): further cleanup TaxonNodeFilter
Andreas Müller
03:05 PM Revision c1ea474d (cdmlib): fix null handling in QuantitativeData.NewMinMaxInstance
Andreas Müller
02:58 PM Revision cd2dc972 (cdmlib): cleanup
Andreas Müller
02:58 PM Revision 38a94319 (cdmlib): make TaxonNodeFilter constructors private, use factory methods instead.
Andreas Müller
11:50 AM Revision ab0702a9 (taxeditor): cleanup
Andreas Müller
10:40 AM bug #9055 (Closed): Relabel "Type Designation" to "Type Information"
looks fine. Katja Luther

06/04/2020

05:12 PM bug #9055: Relabel "Type Designation" to "Type Information"
I fixed this. Please review. Andreas Müller
05:05 PM bug #9055 (Resolved): Relabel "Type Designation" to "Type Information"
Applied in changeset commit:taxeditor|8886565aa01ea7b0a0d2577a199e3cce70554023. Andreas Müller
12:32 PM bug #9055 (Feedback): Relabel "Type Designation" to "Type Information"
in Name Details View.
This is because textuell type designations are usually no desingations but only information ...
Andreas Müller
05:05 PM Revision 8886565a (taxeditor): fix #9055 relabel type designation => type information
Andreas Müller
04:53 PM bug #9053 (Closed): CCE when selecting Character Tree for descriptive dataset
Fixed Andreas Müller
09:39 AM bug #9053: CCE when selecting Character Tree for descriptive dataset
please review Katja Luther
09:37 AM bug #9053 (Resolved): CCE when selecting Character Tree for descriptive dataset
Applied in changeset commit:cdmlib|e0e63b180e28c4bcd085c31ac6055d117aea00de. Katja Luther
08:57 AM bug #9053: CCE when selecting Character Tree for descriptive dataset
The same problem occurs when selecting a character tree in the Character Editor. Andreas Müller
08:48 AM bug #9053 (Closed): CCE when selecting Character Tree for descriptive dataset
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/termtree.service
last remote r...
Andreas Müller
03:04 PM Revision 9370d21c (taxeditor): #8785: move aggregation to context menu
Katja Luther
11:52 AM Revision d4c5694c (taxeditor): minor
Katja Luther
11:40 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Andreas Müller wrote:
> > An important open issue is that it is currently not possible to add...
Andreas Müller
09:54 AM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
Katja Luther
09:41 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> An important open issue is that it is currently not possible to add a "literature"- or a "de...
Katja Luther
09:25 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Also the buttons "Aggregation" and "Generate Polytomous Key" should be handled in the menu, not as separate buttons. ... Andreas Müller
09:22 AM bug #8785: Move functionality of buttons to context menu of the character matrix
An important open issue is that it is currently not possible to add a "literature"- or a "default"-description for a ... Andreas Müller
09:19 AM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
"Add description" is still missing a translation. Also I think we should call it "Add specimen description" because i... Andreas Müller
11:39 AM Revision 08332188 (cdmlib): ref #9029: merge needs to handle all kind of descriptions
Katja Luther
11:39 AM feature request #9054 (New): Allow adding taxon descriptions to matrix for taxa which have no spe...
Currently only taxa are shown which do have speciemn descriptions attached. This is not correct because it should als... Andreas Müller
09:54 AM bug #8754 (Feedback): DescriptionElements are not deleted with the Descriptive Data Set
Generally I have problems to understand this ticket.
Do I understand it correctly that the expectation is that del...
Andreas Müller
09:32 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
When trying to delete a descriptive dataset I got the following exception. Though it seems as if the delete was execu... Andreas Müller
09:38 AM Revision e0e63b18 (cdmlib): fix #9053: differ between SortableTaxonNodeQueryResult and simple uui...
Katja Luther
09:29 AM Revision c2fb4bcf (taxeditor): ref #8785: add translation for add description
Katja Luther

06/03/2020

12:13 AM bug #8662 (Feedback): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon...
If the tree list is empty it works now as expected.
>Auch wenn Taxa existieren, wird das Kontextmenü angezeigt und...
Andreas Müller
11:34 PM feature request #7774 (Closed): Show description source for description elements
Works as expected. Nice feature. Andreas Müller
11:25 PM bug #8969 (Closed): Multiple deduplications are not executed
Seems to work as expected. Andreas Müller
11:15 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu...
The problem still exists if you directly click on the moved synonym. If you click on another name and back again the ... Andreas Müller
06:07 PM Revision 45e6c867 (taxeditor): ref #8785: tabel does not need to be configured completely new for...
Katja Luther
06:06 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> There is still big one open issue: adding the first specimen does not work by context menu bec...
Katja Luther
05:34 PM Revision 31b2a7eb (taxeditor): ref #8903: fix exception in deletehandler
Katja Luther
04:54 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon ...
Andreas Müller wrote:
> "Classificatorical states" should be "Placement status" as "classificatorical" does not seem...
Andreas Müller
04:48 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon ...
I added "show taxon node status note" to the ticket titel as this task is strongly related (see also #9005) Andreas Müller
04:36 PM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtfu...
"Classificatorical states" should be "Placement status" as "classificatorical" does not seem to be English word (I co... Andreas Müller
04:27 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon ...
On the taxon page in the tabbed version I would move the text above the tabs (immediately below the title). Now it ap... Andreas Müller
02:49 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon ...
In classification tree it looks fine Andreas Müller
01:28 PM bug #8961 (Closed): Using the selection dialogue for nomenclatural references removes the recentl...
Seems to work as expected. Andreas Müller
01:24 PM bug #9052: NPE in name details view for incomplete name relationships
Please review Andreas Müller
01:23 PM bug #9052 (Resolved): NPE in name details view for incomplete name relationships
Applied in changeset commit:taxeditor|afbd7a15f92a835d0c5da1dc48f9fa20b3dd1235. Andreas Müller
01:22 PM bug #9052 (Closed): NPE in name details view for incomplete name relationships
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/term.service
last remote reque...
Andreas Müller
01:23 PM Revision afbd7a15 (taxeditor): fix #9052 fix NPE for name details view name relationships
Andreas Müller
01:20 PM Revision 1c9ede79 (taxeditor): cleanup
Andreas Müller
12:32 PM bug #8903: Remember expansion state in factual data view
For SpecimenDescriptions it seems to work as expected. Andreas Müller
12:24 PM bug #8903 (Feedback): Remember expansion state in factual data view
When testing on TaxonDescriptions I got an CCE:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/r...
Andreas Müller
12:19 PM bug #8954 (Feedback): Details and Supplemental Data View do not save the expansion state of secti...
For the supplemental data view and the details view the behavior seems to be fixed.
Did you also work on the factu...
Andreas Müller
11:49 AM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to referen...
Generally this works. Only the year should be improved as the year from sections like book sections might be taken fr... Andreas Müller
11:44 AM bug #9051 (New): Creating a new user with missing rights results in two message-boxes
mail AM:
Außerdem kommt nach dem Versuch einen User anzulegen, ohne dass man die Rechte dazu hat, erst ein normale...
Katja Luther
11:38 AM bug #8962 (Closed): Handle widget is disposed after closing Supplemental Data View
I don't know how to review this exactly. The code looks ok as far as I can decide this. Andreas Müller
11:15 AM bug #9050 (New): Context menu item new should be disabled for missing rights
For users without the right to create a new user the context menu of the user bulk editor should be adapted and the n... Katja Luther
10:45 AM bug #8963 (Closed): Selection dialogues should be modal
Seems to work as expected. Andreas Müller
10:35 AM bug #8999 (Closed): Verbatim date not persisted for books
Works as expected. Andreas Müller
10:22 AM bug #9045 (Closed): TextualTypeDesignation throws exception in referencing objects view
I tested with name "Orphaned syn" on rem_conf_am. Code and result is trivial so I close this ticket. Andreas Müller
10:19 AM bug #9047: Search does not return orphaned synonyms
I tested on rem_conf_am with "Orphaned syn*" . It seems to work. I change category as this is a general cdmlib issue... Andreas Müller
10:16 AM feature request #8988 (Closed): Add link button to DOI field for references
Works as expected Andreas Müller
10:15 AM bug #9035 (Closed): Reference details view throws NPE
This is fixed. As it was only a temporary regression during 5.15 development I remove the target version. Andreas Müller

06/02/2020

12:17 PM bug #9049 (Closed): Import Flora of Uzbekistan taxa habitats
Andreas Müller
11:18 AM Revision ec658daf (cdmlib-apps): ref #9041 UzbekistanAltitudeActivator added
Andreas Müller
11:08 AM feature request #9048 (New): Checking number of synonyms when paste them into name editor
mail WB:
ist mir schon passiert und war auch, glaube ich, schon mal Thema:
Eine Funktion, die beim Einfügen von S...
Katja Luther
09:40 AM Revision af1161e4 (cdmlib): ref #9041 first incomplete version for AltitudeExcelImport
Andreas Müller
09:38 AM Revision 0ab19716 (cdmlib): cleanup
Andreas Müller
 

Also available in: Atom

Add picture from clipboard (Maximum size: 40 MB)