Activity
From 05/24/2020 to 06/22/2020
06/22/2020
- 11:46 PM Revision 45ecfdaa (cdmlib): cleanup
- 11:25 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Hmm, this behavior definitely needs further discussion. I do not remember that we had decided to implement it this wa...
- 10:57 PM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- However, it was somehow difficult to test this ticket as the behavior was not always reproducable. One time selecting...
- 10:28 PM feature request #9084: Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- Katja Luther wrote:
> Did you try this with different descriptions?
> I never got this exception, maybe you remove... - 09:41 PM feature request #9084: Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- Did you try this with different descriptions?
I never got this exception, maybe you removed the descriptionElementS... - 08:08 PM feature request #9084 (Feedback): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- When I tried to delete a description from matrix without deleting from specimen I got the following exception:
~~~... - 10:52 PM Revision cab7b403 (cdmlib): fix NPE during specimen clone for matrix
- 10:51 PM Revision 3c2c69c6 (cdmlib): cleanup
- 09:06 PM Revision 42d15fca (cdmlib): add specimen to updateResult
- 09:01 PM Revision c04426d1 (taxeditor): ref #8785:update facts view after searching
- 08:58 PM Revision 5c9a95f8 (taxeditor): fix CCE in descriptive dataset editor
- 08:02 PM feature request #9089 (New): Show descriptive datasets in description details view
- Currently it is necessary to open the referencing objects view to know if a description is part of a descriptive data...
- 06:29 PM bug #9088 (Closed): CCE (ClassCastException) when adding annotation to TextualTypeDesignation in Name-Bulkeditor
~~~
last remote method : http://localhost:8080/remoting/name.service
last remote request client time : 2020-06-22...- 06:25 PM feature request #8134: Implement verbatim type information in dataportal
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > TextualTypeDesignation are not supposed to contain validly pu... - 05:04 PM feature request #8134: Implement verbatim type information in dataportal
- Andreas Kohlbecker wrote:
> TextualTypeDesignation are not supposed to contain validly published type designations, ... - 04:45 PM feature request #8134: Implement verbatim type information in dataportal
- TextualTypeDesignation are not supposed to contain validly published type designations, therefore it makes no sense t...
- 01:48 PM feature request #8134: Implement verbatim type information in dataportal
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The textual type designation are now at least shown in the ta... - 06:18 PM bug #9087 (Closed): typedesignation/{uuid}/annotations must return pager objects
- see commit:cdm-dataportal|45b496bc -> cdm_api.module which fixes the problem for #8134
Test page `reference_int/cd... - 06:13 PM Revision 45b496bc (cdmlib): ref #8134 fixing missing initialization of TaonNode.statusNode and source.citation
- 06:11 PM Revision a6c4c53c (cdm-dataportal): ref #8134 dealing with web service problems returning list instead of pagers and better placement of footnotes
- 06:09 PM Revision e26fd740 (cdmlib): ref #9078 adapt return type of service.parseName
- 05:30 PM Revision 60009dff (cdmlib): ref #9004 change source type to DescriptionElementSource for TaxonNode.source
- 04:55 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- The source can be edited via the taxon node wizard ("placement source") but only reference (and if a new node is crea...
- 01:15 PM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- display of status notes, source and annotations is implemented.
Is there any way to edit source and annotations ... - 04:24 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> Andreas Müller wrote:
> > There is also another strange behavior. When I do "reattache" the s... - 10:00 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- 03:43 PM Revision 1ce6e8ce (cdm-dataportal): ref #8134 trimming text
- 03:43 PM Revision 6325c7ad (cdm-dataportal): ref #8134 test for TextualTypeDesignation (requires new page class: NamePage)
- 03:09 PM Revision 4123dbbc (taxeditor): update facts view after searching
- 02:09 PM Revision 829d7f26 (cdm-dataportal): ref #8134 render_type_designations() cleaning code
- 02:07 PM Revision 79904336 (cdm-dataportal): ref #8134 moving render_type_designations() to include file
- 02:06 PM Revision 0c720425 (cdm-dataportal): ref #8134 refactoring theme to render function
- 01:13 PM Revision 95e00758 (cdm-dataportal): ref #9010 showing status notes, source and annotations
- 11:46 AM Revision d4db3c89 (taxeditor): ref #8785: adapt to changes in method signature of mergeDescriptions
- 11:45 AM Revision 4aa29834 (cdmlib): ref #8785: mergeDescriptions returns updateResult
06/21/2020
06/20/2020
- 11:00 AM Revision eeff4578 (taxeditor): ref #8785: fix saving of newly created descriptions for descriptive dataset
- 10:56 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Now add and delete should work. But if a specimen contains more than one description that could be used for cloning, ...
- 10:55 AM Revision 831a079e (cdmlib): ref #8785: fix saving of newly created descriptions for descriptive dataset
- 09:34 AM Revision 0020d108 (cdmlib): rf #9078 add parsing for existing names
- 09:33 AM Revision 8ce66ade (cdmlib): ref #9078 remove logging for deduplication
- 09:31 AM Revision d285f18d (cdmlib): ref #9085 improve X_OR_FIRST_NULL handling
- 09:23 AM bug #8959 (Closed): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Now it seems to work as expected
- 08:47 AM bug #9058 (Feedback): Hibernate loggs error when creating schema on MySQL due to failing index creation
- I copied the exception handling to a new ticket #9086.
I think the real issue of this ticket (exceptions are throw... - 08:45 AM feature request #9086 (New): Throw exception during schema generation if an exception occurrs
- copied from #9058
for a detailed description see there.
Different solutions exist by either finding a way to ru... - 08:37 AM bug #8857 (Closed): NonUniqueObjectException when creating new taxon
- That was because #9078 was set as blocker.
- 07:50 AM bug #8857: NonUniqueObjectException when creating new taxon
- I can't close the ticket because the closed status is not available
- 07:49 AM bug #8857: NonUniqueObjectException when creating new taxon
- tested it with a author and reference already in database and it works like expected.
- 08:35 AM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- this is done.
- 08:34 AM feature request #9085 (In Progress): Improve deduplication of parsed names
- 02:21 AM Revision c8f12e19 (taxeditor): cleanup
- 12:59 AM Revision 97a2bbb9 (taxeditor): ref #8754: adapt description for delete descriptions
- 12:57 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> So back to original issue of this ticket.
>
> The configurator now looks like
>
> ![]... - 12:44 AM Revision 1de7515f (taxeditor): ref #8785: smaller issues in character matrix - add and remove descriptions
06/19/2020
- 11:35 PM bug #8857 (Resolved): NonUniqueObjectException when creating new taxon
- With the changes for #9078 this is fixed now. Katja can you please again check and close the ticket if it works
- 11:26 PM Revision c078cfb8 (cdmlib): ref #9085 improvements to MatchStrategyFactory and switch order of match parameters, some improvements to TimePeriod matching
- 11:16 PM feature request #9085 (Closed): Improve deduplication of parsed names
- Special methods have been implemented during E+M import for improved deduplication (references+authors) of parsed nam...
- 09:39 PM Revision 8f2b3bc1 (cdmlib): ref #8785: reuse compatible description when adding specimen to character matrix
- 09:38 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> The main issue I originally wanted to test was how the deleting and adding of specimens in... - 06:24 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Did you save before you "reattache"?
Yes, sometimes I even did restart the TaxEditor. Almos... - 05:33 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Copied from #8754#note-22
>
> There is also another strange behavior. When I do "reattach... - 05:31 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Copied from #8754#note-22
There is also another strange behavior. When I do "reattache" the specimen to the matrix... - 05:05 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Upps sorry, I have overridden your changes accidentely. But maybe it is better to handle this in another ticket. What...
- 05:03 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Maybe we also need a configurator here for the removal of specimens(descriptions) from the matrix. Same issue as at #...
- 04:51 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- 10:37 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- I think all issues are fixed, please review.
- 10:37 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Now, when entering a value at "Specimen Filter" you sometimes get more values then when ente... - 10:35 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Katja Luther wrote:
> > The specimen list is loaded only the first time the dialog is opene... - 10:20 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Generally the layout should be improved. The "Taxon filter" and the "Specimen filter" look v... - 10:18 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> The layout the legend was corrupted by adding the new filter:
>
> ![](picture265-1.png)
... - 09:30 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> The specimen list is loaded only the first time the dialog is opened and added to a cache, the... - 09:25 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Generally the layout should be improved. The "Taxon filter" and the "Specimen filter" look very different at the mome...
- 09:24 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Now, when entering a value at "Specimen Filter" you sometimes get more values then when ente... - 09:20 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Now, when entering a value at "Specimen Filter" you sometimes get more values then when entering no value. This behav...
- 09:05 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- The new filter should be called "Taxonomic Group" filter or "Taxonomic Subtree" filter as it filters not only on 1 ta...
- 09:02 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- The layout the legend was corrupted by adding the new filter:
![](picture265-1.png) - 08:58 AM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Now the nameCaches of the selected taxa are shown on top of the dialog, and a button for remov... - 09:32 PM Revision 205bdec4 (taxeditor): ref #9084: add config to delete description in character matrix
- 07:25 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
>
> This depends on the rank defined in the descriptive dataset. If you do not define a max ra... - 06:54 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> I watched another strange behavior about the selected taxon. I created a new DDS in rem_conf... - 06:51 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- I watched another strange behavior about the selected taxon. I created a new DDS in rem_conf_am and added the taxon n...
- 05:33 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- I moved #note-22 to #8785 as it belongs to this ticket (I added it accidentely here)
- 05:12 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- So back to original issue of this ticket.
The configurator now looks like
![](picture499-1.png)
so the user... - 04:57 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> I could not test it, yet, but maybe this is a problem of synchronisation between the two edito... - 04:49 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> There is also another strange behavior. When I do "reattache" the specimen to the matrix the... - 04:40 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > now the configuration is available. plea... - 04:38 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- ~~There is also another strange behavior. When I do "reattache" the specimen to the matrix the old record seems to be...
- 04:14 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> Katja Luther wrote:
> > now the configuration is available. please review
>
> Something ... - 03:57 PM bug #8754 (Feedback): DescriptionElements are not deleted with the Descriptive Data Set
- Katja Luther wrote:
> now the configuration is available. please review
Something still is wrong here. What I did... - 05:05 PM feature request #9084 (In Progress): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- 05:03 PM feature request #9084 (Resolved): Make it configurable if a Description is deleted only from the Descriptive Data Set or from it's Specimen/Taxon
- copied from #8785, see also #8754#note-20
Maybe we also need a configurator here for the removal of specimens(desc... - 02:29 PM bug #8593 (Duplicate): Name editor: wrong context menu for synonyms
- this is the same problem as in #8959 because in the video demonstration the heterotypic synonym is moved to the homot...
- 02:19 PM Revision 079cd0bf (taxeditor): set location of login dialog to center of application
- 01:28 PM Revision 3617f84b (taxeditor): menu issues character matrix and descriptive dataset editor
- 11:50 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Katja Luther wrote:
> Applied in changeset commit:taxeditor|9d01ebe78d471b0203107cc8ebaac5ead4f1b2ee.
this should... - 11:35 AM bug #8959 (Resolved): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Applied in changeset commit:taxeditor|9d01ebe78d471b0203107cc8ebaac5ead4f1b2ee.
- 11:37 AM Revision 9d01ebe7 (taxeditor): fix #8959: fix correct focus after move syn
- 10:39 AM bug #9081 (Closed): Handle empty Partials correctly
- the code looks good and the tests work as expected, so we can close this ticket.
- 12:04 AM bug #9081: Handle empty Partials correctly
- should be fixed. Please review.
- 10:37 AM Revision 31bb0295 (taxeditor): ref #8785: layout issues
- 09:56 AM Revision 5f54eb62 (taxeditor): ref #8785: fix specimen selection for no filter and layout issue
- 09:53 AM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
- 08:38 AM bug #8849 (Closed): NPE in synonym DetailsViewer for synonyms without accepted taxon
- Andreas Müller wrote:
> Good points.
>
> I suggest to split the ticket. The NPE is fixed so this ticket can be cl... - 08:37 AM bug #9083 (New): Improve authorization handling in synonym details view (and generally)
- from #8849#note-7
Generally for permission checks the class CdmUserHelper should be used which provides a couple o... - 12:31 AM Revision 2953f2bf (cdmlib): fix failing test and cleanup
- 12:29 AM Revision 251dd204 (cdmlib): fix failing test and cleanup
- 12:21 AM Revision f7d4f55f (cdmlib): fix #9081 cleaning up tests using "00000000" (cont. 2)
- 12:19 AM Revision 60e7f76c (cdmlib): fix #9081 cleaning up tests using "00000000" (cont.)
- 12:08 AM task #9082 (In Progress): Update script for old empty Partials handling
- 12:08 AM task #9082 (Closed): Update script for old empty Partials handling
- Especially for Person.lifespan_end and Person.lifespan_start the problem existed. See #9081
~~~
UPDATE AgentBase ... - 12:02 AM Revision 359fd14e (cdmlib): cleanup
- 12:02 AM Revision 4c4faa00 (cdmlib): fix #9081 cleaning up tests using "00000000"
06/18/2020
- 11:54 PM bug #9081 (Resolved): Handle empty Partials correctly
- Applied in changeset commit:cdmlib|15f01b88c23a2d398aaa3dda81f0a6954a57da64.
- 06:12 PM bug #9081 (Closed): Handle empty Partials correctly
- Currently empty partials are stored as "00000000" in the database. This results in a situation where an hql query lik...
- 11:54 PM Revision 15f01b88 (cdmlib): fix #9081 fix handling of empty Partial during save and in Person.get/setLifespan
- 10:38 PM feature request #4298: refresh views after changing rights
- No it is the user him- or herself. So in this situation some windows might be open and functionality enabled which sh...
- 04:28 PM feature request #4298: refresh views after changing rights
- The description is not really clear.
Does the user itself changes his rights? Or the administrator? - 03:33 PM feature request #4298: refresh views after changing rights
- Andreas Kohlbecker wrote:
> I guess that this ticket has been erroneously assigned to me.
This ticket was created... - 02:05 PM feature request #4298: refresh views after changing rights
- I guess that this ticket has been erroneously assigned to me.
- 05:33 PM bug #8593: Name editor: wrong context menu for synonyms
- this is still an open issue
- 03:23 PM bug #8593 (Feedback): Name editor: wrong context menu for synonyms
- Can you check if this ticket is still open beside the remaining issue described in #8959 ?
I did not have this pr... - 05:14 PM bug #9058: Hibernate loggs error when creating schema on MySQL due to failing index creation
- > make it possible to activate holdOnError flag in SchemaExport to allow throwing Exceptions if problems occur during...
- 04:53 PM feature request #9078 (In Progress): Handle name parsing and deduplication on server side
- There is a problem with effectively deduplicating classes having a timePeriod attribute as empty Partials are sometim...
- 04:44 PM Revision 014ff426 (cdmlib): cleanup
- 04:43 PM Revision 0f9d8bd0 (taxeditor): cleanup
- 04:35 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- Thank you, I think we can close this ticket now.
- 04:04 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- I added the relevant tickets
- 02:02 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- please see the last comment
- 04:33 PM feature request #9034 (Closed): simple agent list page with filter function
- 04:32 PM Revision 77451b2a (cdm-dataportal): ref #9034 fixing uninitialized variable bugs and completing pager function
- 04:22 PM Revision 99fab853 (taxeditor): ref #8785: add remove filter button and title containing the selected taxa
- 04:20 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Generally this works.
> > >
> > > T... - 01:46 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > Generally this works.
> >
> > There is 1 open issue which is a b... - 01:26 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > ... however, the value was stored in the... - 12:00 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Generally this works.
>
> There is 1 open issue which is a bit critical: it is only possi... - 11:45 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > ... however, the value was stored in the DB, so maybe the error occ... - 08:55 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> ... however, the value was stored in the DB, so maybe the error occurred during save for AUD... - 08:53 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Kohlbecker wrote:
> "Das Label im Kontextmenü "Add Specimen Descriptions" ist zwar inhaltlich richtig aber "... - 04:10 PM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- 04:10 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The new field seems not to be used for... - 01:30 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Katja Luther wrote:
> Andreas Müller wrote:
> > The new field seems not to be used for entering values in the dialo... - 10:02 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Andreas Müller wrote:
> The new field seems not to be used for entering values in the dialogs for the descriptive ma... - 04:09 PM feature request #9080 (New): Use detailElement of quantitative data in dialog of character matrix
- see #9038#note-19 and #9038#note-20
- 04:05 PM feature request #3095 (New): protect taxa and nodes
- 03:58 PM feature request #8968: filter Bulk editor for created by
- createdBy AND updatedBy would be great!
- 03:56 PM feature request #8968: filter Bulk editor for created by
- As the sort function for columns already exists we only need to add the createdBy (and updatedBy?) column. This shoul...
- 03:53 PM feature request #8968: filter Bulk editor for created by
- A sort function would be fine for administering user's entries by the curator.
- 03:49 PM feature request #8968: filter Bulk editor for created by
- Needs discussion if this should be implemented for the search or for simply filtering the resulting table , see #8181...
- 03:44 PM feature request #8181: Further features for bulk editors
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > @Andreas: can you explain what you mean by MarkerType? Should... - 03:02 PM feature request #8181: Further features for bulk editors
- Andreas Müller wrote:
> @Andreas: can you explain what you mean by MarkerType? Should there be a concatenated list o... - 03:27 PM feature request #3683 (Closed): add /etc/default/cdmserver to debian package
- can be closed
- 03:25 PM bug #8682: cdm-server debian packages configured for jemalloc
- Andreas Kohlbecker wrote:
> can be closed if
>
> 1. there are no problems on the test or int server
> 2. all `LD... - 03:20 PM feature request #6878 (Closed): choose a base font for the portal and deliver it from the drupal module or theme
- works as expected
- 03:19 PM Revision 23c0bb1f (cdm-dataportal): ref #6878 using noto sans also for relationship symbols
- 01:59 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- I linked a tightly related issue: #8593
- 01:57 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Katja Luther wrote:
> Andreas K., can you also check if you can reproduce this?
Yes, this is reliably reproducibl... - 08:56 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Andreas K., can you also check if you can reproduce this?
- 01:31 PM feature request #3385: install enable and configure WYSIWYG editors be default
- attaching a test feature which has been created from http://edit.test/d7/phycobank/admin/structure/features/create
- 01:21 PM feature request #3385: install enable and configure WYSIWYG editors be default
- The [Features](https://www.drupal.org/project/features) apparently has all the functionality needed: "*Features focus...
- 12:18 PM Revision 607296e9 (taxeditor): ref #8785: add button to specimen sel dialog to remove filter
- 11:46 AM Revision 1d008f73 (cdmlib): ref #8785: fix sql exception by fixing nullSafeSet
- 09:16 AM feature request #9032 (Closed): Implement Feature.availableFor in TaxEditor
- Andreas Müller wrote:
> Looks much better now.
>
> I just wonder if it is not maybe better to handle Supports and... - 09:16 AM feature request #9079 (New): Move supported and available for parts of feature detail element to sections
- from #9032:
I just wonder if it is not maybe better to handle Supports and Available for also as Sections (they ha... - 09:02 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- now the configuration is available. please review
- 08:55 AM Revision 2d8bc492 (taxeditor): ref #8785: smaller label issues
- 08:55 AM Revision 40425911 (taxeditor): avoid widget is disposed exception when clicking on finish and open
06/17/2020
- 07:44 PM Revision ca219b0f (cdm-dataportal): ref #9034 fixing uninitialized variable an other bug
- 07:12 PM feature request #8181: Further features for bulk editors
- Andreas Kohlbecker wrote:
> Just a thought on additinal filter options for bulkeditors in general:
>
> the servic... - 07:09 PM feature request #8181: Further features for bulk editors
- ref type already exists so I kind of remove it from the above list.
As "created by" should be easy to implement so... - 06:57 PM feature request #8181: Further features for bulk editors
- Just a thought on additinal filter options for bulkeditors in general:
the service method `IdentifiableDaoBase.fin... - 07:09 PM feature request #9022 (Closed): Implement lifespan for Person Details View
- works as expected, ticket can be closed
- 07:08 PM bug #9056: Entering a year in timeperiod element recalculates the dimension of the textfields in strange way
- I can't reproduce this on KDE Neon 5.19.0
- 06:12 PM Revision aac8a307 (taxeditor): using correct message for failed developer login attempt
- 05:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- "Das Label im Kontextmenü "Add Specimen Descriptions" ist zwar inhaltlich richtig aber "Add Specimens" wäre intuitive...
- 05:36 PM bug #9013 (Closed): Problems in TaxonNode Dialog
- I can no longer reproduce these errors - closing this as fixed.
- 05:29 PM bug #8849: NPE in synonym DetailsViewer for synonyms without accepted taxon
- Good points.
I suggest to split the ticket. The NPE is fixed so this ticket can be closed.
The improved handling ... - 04:42 PM bug #8849 (Feedback): NPE in synonym DetailsViewer for synonyms without accepted taxon
- Generally for permission checks the class `CdmUserHelper` should be used which provides a couple of methods like `use...
- 05:25 PM bug #8816 (Worksforme): NoSuchElementException during adding Specimens to Matrix Editor
- also can't reproduce this issue
- 01:55 PM feature request #9025 (Closed): allow for creating a new schema in empty dbs via the remote login dialog
- 12:56 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- > The "Create Schema" must not be triggered by hitting the enter key in the password or username fields
Is also fi... - 12:45 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- The color issue is fixed, now. Please can someone check the look on windows?
- 12:37 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The Points 1 - 4 from above are fixed.
> >
> > Two remaini... - 12:35 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- Andreas Kohlbecker wrote:
> The Points 1 - 4 from above are fixed.
>
> Two remaining issues:
>
> * The connect... - 12:25 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- The Points 1 - 4 from above are fixed.
Two remaining issues:
* The connect button however looks a bit strange b... - 12:55 PM Revision aa175a7a (taxeditor): ref #9025 password field does not trigger connect button when action is schmea create
- 12:42 PM Revision ec99dd06 (taxeditor): ref #9025 fixing button color issue
- 12:26 PM Revision 08a36bdf (taxeditor): ref #8754: adapt deleteHandling to configuration
- 12:22 PM Revision e423ad05 (cdmlib): ref #8754: add deleteConfig for descriptiveDataset
- 09:35 AM Revision 3f6dbb50 (taxeditor): fix problems with Nomenclatural code preference
- 08:43 AM bug #8901 (Resolved): Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Is this fixed and should be reviewed?
>
> ??
sorry, yes. - 01:38 AM Revision b6a90c36 (taxeditor): ref #9078, ref #8857 adapt TaxEditor to extended CreateTaxonDTO
- 01:37 AM Revision ce9a92e4 (taxeditor): cleanup
- 01:21 AM Revision 7d1593b0 (cdmlib): ref #9078 , ref #8857 use server side parsing in TaxonNodeServiceImpl.createNewTaxonNode
- 01:20 AM Revision 72eb424b (cdmlib): ref #9078 first server side implementation for parsing and deduplication of names
- 01:19 AM Revision f3544285 (cdmlib): cleanup and remove deprecated JOIN type method
- 01:16 AM feature request #9078 (Closed): Handle name parsing and deduplication on server side
- this is blocking #8857
requires:
* improvement of match strategies for parsed names (MatchStrategyFactory): #9... - 12:24 AM Revision fee89c0b (taxeditor): cleanup
- 12:22 AM Revision ba4b5517 (cdmlib): cleanup
06/16/2020
- 09:37 PM Revision df5baf41 (cdmlib): cleanup
- 09:06 PM bug #8901: Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
- Andreas Müller wrote:
> Is this fixed and should be reviewed?
?? - 09:00 PM Revision f2c39369 (taxeditor): cleanup
- 09:00 PM Revision 8c2d9190 (taxeditor): i18n for TaxonNodeDetailElement
- 07:43 PM bug #9077 (New): Handle "Show details" in context menu of name editor differently
- Currently the context menu's last entry is "Show details". This does not make sense as we also have the "Open in ..."...
- 07:28 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Andreas Müller wrote:
> The problem still exists if you directly click on the moved synonym. If you click on another... - 07:25 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Andreas K., can you also check if you can reproduce this?
- 07:24 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- What I did in rem_conf_am:
* Open taxon "Test" in classification "Testklass"
* Move heterotypic synonym Hetero sy... - 07:15 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Strange, the problem still exists for me:
![](picture836-1.png) - 11:52 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Katja Luther wrote:
> I tried an hour ago, but the test server was not available.
I can't reproduce it with the n... - 11:38 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Now the test server is up again. Can you please try again?
- 11:16 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- I tried an hour ago, but the test server was not available.
- 11:14 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Did you try again? If not please pass the ticket back to me and I will try again.
- 06:22 PM bug #9024 (New): repeated startups of the managed server eats up harddisk space
- In windows it is configurable but by default automatic cleaning of the temp file is switched off. If switched on it c...
- 05:36 PM bug #9076 (Closed): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
- the test portal looks ok now
- 05:31 PM bug #9076 (Resolved): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
- Applied in changeset commit:cdm-dataportal|aec9ca7defa215bd9d28320a526751741baac1ce.
- 05:30 PM bug #9076 (In Progress): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
- 05:30 PM bug #9076 (Closed): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
- When the setting for 'Synonymy as tab' and 'Tabbed taxon page' (config/cdm_dataportal/settings/layout/taxon) are off ...
- 05:31 PM Revision aec9ca7d (cdm-dataportal): fix #9076 fixing missing synonymie div
- 04:56 PM feature request #9034: simple agent list page with filter function
- [Henning wrote]
Gefällt mir sehr gut!!
Vielen Dank und viele Grüße,
Henning - 04:21 PM feature request #9034 (Resolved): simple agent list page with filter function
- Done! Ich fand es übersichtlicher und ruhiger nach den Namensdetails eine Zeilenschaltung einzuschieben.
- 04:14 PM feature request #9034: simple agent list page with filter function
- Hallo Andreas,
vielen Dank für Deine Mail und Deinen Vorschlag. Einerseits finde ich Deinen Vorschlag gut wei... - 04:32 PM Revision acd4e30a (cdmlib): ref #8785 add supportsOriginalSourceType to AggregationSourceMode
- 04:31 PM Revision d46ac3ea (cdmlib): Rename label for "from child to parent" AggregationMode
- 04:16 PM Revision 5ae6e6d1 (cdm-dataportal): ref #9034 new agent item layout
- 03:55 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- ... however, the value was stored in the DB, so maybe the error occurred during save for AUD data.
- 03:51 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- When changing a value (1 out of 3 exact values) I got an exception during save:
~~~
last remote method : http://t... - 03:29 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
- Generally this works.
There is 1 open issue which is a bit critical: it is only possible to a specimen for a taxon... - 03:50 PM bug #9075 (New): Exact values in descriptive matrix label provider should be ordered
- Currently they appear in non-deterministic order.
I think the best appropriate order is to order them by value, st... - 03:35 PM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- The new field seems not to be used for entering values in the dialogs for the descriptive matrix. But this is the mai...
- 09:44 AM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- looks good.
- 03:14 PM Revision 46cc150c (taxeditor): ref #9004 rename parent child relation source to placement source in TaxEditor
- 03:06 PM Revision 181a2054 (taxeditor): cleanup
- 02:55 PM bug #9016 (Closed): Adding specimen without field unit fails
- This works.
A related ticket that the protected titleCache of an orphaned derived unit is handled in #9074 - 02:53 PM bug #9074 (New): Specimen missing a collector + n° and missing a collection identifier (Barcode, Accession number) not identifiable in descriptive Matrix
- e.g. linking a Specimen without fieldunit which has only information in the DerivedUnit.titleCache shows "no informat...
- 02:48 PM bug #9073 (Worksforme): Configuring the matrix view throws HTTP invoker exception
- I tried to open the view configuration for the descriptive matrix
![](picture700-1.png)
and got the following e... - 02:14 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- I don't exactly remember the situation out of which I wrote this tickt, but from my current point of view the solutio...
- 11:17 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Generally I have problems to understand this ticket.
> >
> > D... - 11:16 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Andreas Müller wrote:
> Generally I have problems to understand this ticket.
>
> Do I understand it correctly tha... - 01:46 PM Revision 75b9ff9a (cdm-server): upading cdm-server launchers
- 01:45 PM feature request #7820 (Rejected): Add cron job for deleting cdmserver log files after a specified time period
- no longer needed as we are using the RollingFileAppender of lockback which deletes logs older than 30 days or if the ...
- 01:42 PM feature request #7821 (Duplicate): Use log4j2 for cdmserver logging to avoid having a separate cron job for deleting log files
- closing as duplicate of #7085
- 01:41 PM bug #7085 (Closed): cdmserver logfiles getting too big, use RollingFileAppender
- implemented and tested locally, on edit-test and edit-int.
- 01:39 PM bug #8682: cdm-server debian packages configured for jemalloc
- can be closed if
1. there are no problems on the test or int server
2. all `LD_PRELOAD=/usr/lib/x86_64-linux-gnu/... - 11:53 AM bug #8682: cdm-server debian packages configured for jemalloc
- mainly solved!
Remaining task: adapt cdm-server documentation
After the release all `LD_PRELOAD=/usr/lib/x86_64... - 11:50 AM bug #8682 (Resolved): cdm-server debian packages configured for jemalloc
- Applied in changeset commit:cdm-server|bc3050782e9cc090105f1ea63d005d471c8c48f1.
- 01:37 PM feature request #3683: add /etc/default/cdmserver to debian package
- done. Ticket can be closed when there are no problems on the test and int server.
- 01:36 PM feature request #3683 (Resolved): add /etc/default/cdmserver to debian package
- Applied in changeset commit:cdm-server|2fb99eb9e93faf8769f8ea22cadb12caea3c30b1.
- 01:35 PM Revision 2fb99eb9 (cdm-server): fix #3683 adding /etc/default/cdmserver to deb package also cleaning up & improving
- 11:50 AM Revision bc305078 (cdm-server): fix #8682 adding libjemalloc as package dependency and setting LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libjemalloc.so.1 in init script
- 11:35 AM bug #7189: Taxeditor connect dialog high-dpi suport
- I tested with 100%, 125%, 150% and 175% on a windows machine
- 11:34 AM bug #7189 (Closed): Taxeditor connect dialog high-dpi suport
- This is generally fixed. Only issue is that the recalculation of the layout sometimes stocks in the middle while data...
- 11:30 AM feature request #9072 (New): Layout issues temporal data details view
- from #8990:
Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead having a ... - 11:29 AM feature request #8990 (Closed): Implement flowering periods (temporal facts) in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > There was still an NPE in the DescriptionHelper. I tried to fix t... - 11:22 AM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
- Andreas Müller wrote:
> Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead... - 11:21 AM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
- An improved formatter is handled in #9071
- 11:18 AM feature request #8990 (Feedback): Implement flowering periods (temporal facts) in TaxEditor
- Andreas Müller wrote:
> There was still an NPE in the DescriptionHelper. I tried to fix this in f266536e
This wor... - 11:20 AM feature request #9071 (Closed): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
- copied from #8990
- 11:06 AM feature request #9032 (Feedback): Implement Feature.availableFor in TaxEditor
- Looks much better now.
I just wonder if it is not maybe better to handle Supports and Available for also as Sectio... - 09:37 AM feature request #9032: Implement Feature.availableFor in TaxEditor
- the layout issues are solved.
- 09:35 AM feature request #9032 (Resolved): Implement Feature.availableFor in TaxEditor
- Applied in changeset commit:taxeditor|45f8176560c646e39fb6244aa33a38160a4adea9.
- 10:55 AM Revision 54f6c4ab (cdmlib): cleanup
- 10:55 AM Revision 130d32fa (cdmlib): ref #9004 fix transient behavior for TaxonNode.reference and TaxonNode.microReference
- 10:27 AM Revision fac73107 (cdm-server): ignoring compressed log files
- 10:26 AM Revision 07e58903 (cdm-server): solving 'No org.apache.tomcat.InstanceManager set in ServletContext' problem
- 09:53 AM Revision 83cb55ca (taxeditor): ref #9032: label can set to bold
- 09:37 AM Revision 45f81765 (taxeditor): fix #9032: layout issues in feature details view
- 09:23 AM Revision cfddafff (taxeditor): ref #8990 fix NPE in getTemporalDataText (cont.)
- 09:19 AM Revision ac21d2ee (cdm-server): reverting resilient handling of invalid options
06/15/2020
- 10:58 PM Revision abb72019 (cdmlib): cleanup
- 10:58 PM Revision 42045036 (cdmlib): ref #9004 rename isEmpty to checkEmpty to avoid recognition as bean property
- 10:05 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- Minor note: can we move Categorical Data up just below Supports Text Data? This is because features for Categorical D...
- 10:03 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- A minor issue for the layout of the term details view
We should maybe better distinguish the supportsXXX and avail... - 09:55 PM feature request #9032 (Feedback): Implement Feature.availableFor in TaxEditor
- 09:55 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- Generally it seems to work.
One issue I found:
* I changed "Orthography to be available for Taxon, not Taxon na... - 06:02 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- Katja Luther wrote:
> No, I just found a problem.
the problem is fixed, please review.
- 06:01 PM feature request #9032 (Resolved): Implement Feature.availableFor in TaxEditor
- 12:48 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- No, I just found a problem.
- 12:12 PM feature request #9032: Implement Feature.availableFor in TaxEditor
- Is this ticket for review then?
- 11:02 AM feature request #9032: Implement Feature.availableFor in TaxEditor
- Katja Luther wrote:
> the details view and the featureTree creation is implemented, but the preference page needs to... - 09:42 PM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
- Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead having a theses labels a...
- 09:35 PM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
- There was still an NPE in the DescriptionHelper. I tried to fix this in f266536e
- 10:58 AM feature request #8990 (Resolved): Implement flowering periods (temporal facts) in TaxEditor
- a first implementation is available, please review.
- 09:34 PM Revision 73d33afe (taxeditor): cleanup
- 09:31 PM Revision f266536e (taxeditor): ref #8990 fix NPE in getTemporalDataText
- 09:10 PM feature request #9066 (Closed): Make visiblity of Specimen List Editor menu configurable
- Works as expected
- 06:05 PM feature request #9066 (Resolved): Make visiblity of Specimen List Editor menu configurable
- Applied in changeset commit:cdmlib|c3c33fc8596c94035a7d944b6d3dd70b982ea20a.
- 09:07 PM feature request #8958 (Closed): Add publication year, inReference (journal), and URI to reference bulk editor
- now everything looks fine
- 07:56 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
- 07:56 PM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
- Andreas Müller wrote:
> Great, this is looks (IMO).
>
> There is only a minor open issue: if subreference has no ... - 07:56 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
- Applied in changeset commit:taxeditor|7cff439d088ab830363cff21695e0c8b7305d494.
- 09:04 PM feature request #9033 (Closed): Adapt TaxEditor to new TaxonNode.status
- Works as expected
- 07:50 PM feature request #9033: Adapt TaxEditor to new TaxonNode.status
- Andreas Müller wrote:
> Now I got an NPE when switching from status to no status
>
the NPE is fixed, please review. - 07:50 PM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
- Applied in changeset commit:taxeditor|eb5c6646d625eb63d4031b226ae2cd99fa7dda48.
- 08:57 PM feature request #9009: Add structure to store media metadata
- Please review
- 08:54 PM bug #9059 (Closed): Cancel taxon save does not clean the (factual data) cache
- Seems to work now
- 06:06 PM bug #9059 (Resolved): Cancel taxon save does not clean the (factual data) cache
- Andreas Müller wrote:
> I got an NPE when testing this ticket together with #9038
>
the NPE is fixed. - 08:40 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Can you please review my changes and if ok close the ticket?
- 08:39 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- I did some further adaptations. Some were incorrect but now I think it should work as expected (max pre-decimal numbe...
- 07:58 PM Revision 7cff439d (taxeditor): fix #8958: fix copy&paste error
- 07:52 PM Revision eb5c6646 (taxeditor): fix #9033: correct handling for notes when switching between status and no staus
- 07:41 PM feature request #8128 (Duplicate): Add indicator for feature facts and/or vocabularies which description type they support
- This ticket duplicates #9027
- 07:27 PM feature request #9040 (New): Implement open button for ORCIDs
- 05:57 PM feature request #9040 (Resolved): Implement open button for ORCIDs
- 06:07 PM Revision c3c33fc8 (cdmlib): fix #9066: set default of preference to true
- 06:02 PM Revision 8b643532 (taxeditor): fix #9040: adapt preferences to availableFor attribute of features
- 06:01 PM bug #9070 (Resolved): Adapt preference page to feature.isAvailableFor...
- this is fixed, please review.
- 11:01 AM bug #9070 (Closed): Adapt preference page to feature.isAvailableFor...
- The preference pages for facts base on vocabularies but should base on the flags isAvailableForTaxon/-TaxonName/-Occu...
- 06:00 PM Revision 5edd1fbf (cdmlib): fix #9040: implement service/persistent methods to get featureDtos fitting to availableFor param
- 04:04 PM feature request #9067: [DISCUSS] Allow media to support external links not being files
- WGB:
als Diskussionsbeitrag der Hinweis, dass wir in der Darstellung im Portal grundsätzlich die Unterscheidung ei... - 09:02 AM feature request #9067: [DISCUSS] Allow media to support external links not being files
- I actually see no benefit of the "solutions" 2 - 4 over 1.
Adding additional fields for external links is nothing ... - 12:09 PM bug #5601: Creation of local database structure via remoting
- Don't know if this is a better title. The database is not necessarily a **local** one. It only needs to be reachable,...
- 10:22 AM bug #5601 (Duplicate): Creation of local database structure via remoting
- So I close this ticket as duplicate. If you have an idea for a better ticket title feel free to change it.
- 10:02 AM bug #5601: Creation of local database structure via remoting
- Andreas Müller wrote:
> As the description says "can be created automatically in the same way **as it was possible i... - 11:45 AM Revision 7df3e4dd (cdmlib): ref #8990: add formatter for extendedTimeperiod - minor
- 11:43 AM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- I forgot to mention that also the TaxonNode source should be shown here
- 09:31 AM feature request #9010 (In Progress): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- thank you for pointing this out. I overlooked the additional requirement to show also status notes.
- 11:08 AM Revision 64bfdc8f (cdmlib): ref #9004 make isEmpty XmlTransient
- 10:58 AM Revision c9e66e15 (taxeditor): ref #8990: use the extendedTimePeriodPartialFormatter
- 10:56 AM Revision bfa4bcb7 (cdmlib): ref #8990: add formatter for extendedTimeperiod
- 10:25 AM Revision bb201cf5 (cdm-server): resilient handling of invalid options
- 09:56 AM Revision 1f9ea18c (cdm-server): ref #7085 adding the InstanceManager explicitly to fix broken JSP compilation
- 09:11 AM bug #9024: repeated startups of the managed server eats up harddisk space
- in linux systems the tmp folder is cleared during the system start up, which is a very wise strategy. In Mac OS is is...
- 08:55 AM Revision b627e8ef (taxeditor): ref #9038 further improve BigDecimal handling in TaxEditor
- 08:27 AM Revision 259a7758 (cdmlib): ref #9004 change XmlTransient for TaxonNode.reference, .detail and source
- 08:12 AM Revision a43cd7ed (taxeditor): cleanup
- 08:12 AM Revision 55937de8 (taxeditor): ref #9038 try to improve BigDecimal handling in TaxEditor
06/13/2020
- 11:43 AM Revision 8e582e95 (taxeditor): cleanup
- 11:43 AM Revision d08aa271 (taxeditor): ref #9038 try to fix regEx compile error
- 11:40 AM feature request #9004: Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
- Open orphanRemoval issue moved to #9069
- 11:35 AM feature request #9004: Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
- Rename the ticket as the primary change was the change to use OriginalSource (test implementation for #6581)
- 11:38 AM bug #9069 (New): Remove orphan single sources
- In some classes only a single source is referenced (e.g. classes implementing SingleSourcedEntityBase or TaxonName.no...
- 01:19 AM Revision 8d4275af (cdmlib): ref #9004 test CascadeType.Persist for orphanRemoval
- 01:08 AM bug #9024 (Feedback): repeated startups of the managed server eats up harddisk space
- is it really critical if data is extracted into the tmp folder? Older data in this folder should be automatically del...
06/12/2020
- 10:43 PM Revision 58ed6b7d (taxeditor): ref #8990: add temporal data to editor - adapt date element
- 10:42 PM feature request #8990 (In Progress): Implement flowering periods (temporal facts) in TaxEditor
- 10:06 PM Revision 4513cfd5 (cdmlib): ref #6581 ,ref #9004 fix orphanRemoval for ISingleSourced
- 09:14 PM Revision 72b7c024 (cdm-vaadin): clean test data in SpecimenTypeDesignationWorkingSetServiceImplTest-deleteTest.xml
- 09:13 PM Revision 71d25f8e (cdm-vaadin): cleanup
- 09:07 PM Revision fdf36f4e (cdmlib): ref #6581 ,ref #9004 fix preliminary SingleSourcedEntityBase class hierarchy (cont.)
- 09:00 PM Revision cf6aefdd (cdmlib): ref #6581 ,ref #9004 fix preliminary SingleSourcedEntityBase class hierarchy
- 08:27 PM Revision 743e8d06 (cdm-vaadin): update vaadin test H2 to v5.15.2
- 08:26 PM Revision 17f6ab2d (taxeditor): update TaxEditor test H2 to v5.15.2
- 08:23 PM feature request #9004 (Resolved): Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
- Applied in changeset commit:cdmlib|1f1f7ea103177a09f739fe1808def0261f1ea424.
- 08:23 PM Revision b806219d (cdmlib): update remote-webapp test H2 to v5.15.2
- 08:19 PM Revision 149ff443 (cdmlib): ref #6581 ,ref #9004 fix Reference2SourceMover
- 08:05 PM Revision cb29fec9 (cdmlib): cleanup
- 08:05 PM Revision 1f1f7ea1 (cdmlib): ref #6581 , fix #9004 update script for TaxonNode.source and some fixes
- 08:05 PM Revision af51bfe5 (cdmlib): ref #8978 add BigDecimalUserType to handled Usertypes in CdmGenericDaoImpl
- 08:05 PM Revision 03e4c253 (cdmlib): ref #6581 add "source" to Classification, TypeDesignation, RelationshipBase and NomenclaturalStatus
- 08:05 PM Revision a43ff87f (cdmlib): cleanup
- 08:05 PM Revision 046711ec (cdmlib): ref #6581 checkSource uses OriginalSource.isEmpty for nomenclaturalSources
- 08:05 PM Revision 027f931b (cdmlib): ref #9004, ref #6581 link TaxonNode to OriginalSource, not Reference and micro reference String
- 08:05 PM Revision cbdcc8dd (cdmlib): ref #9004, ref #6581 add isEmpty to OriginalSource and super classes
- 08:05 PM Revision 56a54a09 (cdmlib): ref #9067 preliminary added link attribute to Media to support solutions 3 and 4 if required
- 08:05 PM Revision 6f5009a3 (cdmlib): cleanup
- 08:05 PM Revision 13cb8251 (cdmlib): ref #9064 add ExternalLink to IdentifiableEntity
- 05:26 PM Revision 6c9baadc (taxeditor): ref #8990: add temporal data to editor
- 05:23 PM Revision 683f5cd1 (taxeditor): fix NPE in factualDataPart
- 05:18 PM bug #9059 (Feedback): Cancel taxon save does not clean the (factual data) cache
- 05:18 PM bug #9059: Cancel taxon save does not clean the (factual data) cache
- I got an NPE when testing this ticket together with #9038
~~~
last remote method : http://localhost:50405/remotin... - 05:15 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Numbers with >9 digits before the decimal sign are still allowed. I adapted the regex accordingly.
Also incorrect ... - 05:09 PM Revision e00b2687 (taxeditor): ref #9038 fix handling of null values for StatisticalMeasurementValue (comments still need to be removed)
- 05:08 PM Revision 5c875358 (taxeditor): ref #9038 slightly adapted the regEx for StatisticalMeasurementValue BigDecimal
- 04:38 PM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
- Great, this is looks (IMO).
There is only a minor open issue: if subreference has no date data and the inreference... - 03:38 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- now, the string representation is added if the year differs from the string representation of the publication date.
- 03:36 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
- Applied in changeset commit:taxeditor|20c5d67db28aeffddf4445a67d74c7e9d1aea10c.
- 04:24 PM bug #9063 (Closed): Detailsview for MediaSpecimen broken
- works as expected
- 04:22 PM feature request #9068 (New): Parser for ExtendedTimePeriods
- e.g. for phenology data like (Apr)-May-July-(Aug) or (4)-5-7-(8)
- 04:08 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
- Now I got an NPE when switching from status to no status
~~~
last remote method : http://localhost:49511/remoting... - 04:03 PM feature request #9066 (Feedback): Make visiblity of Specimen List Editor menu configurable
- This works as expected. Only I think the default value should maybe be "enabled". This is more according to our defau...
- 12:31 PM feature request #9066: Make visiblity of Specimen List Editor menu configurable
- this should be fixed. please review.
- 12:29 PM feature request #9066 (Resolved): Make visiblity of Specimen List Editor menu configurable
- Applied in changeset commit:taxeditor|a0257f6e93d6a598489c23c4d84868253e4cb82e.
- 11:21 AM feature request #9066 (Closed): Make visiblity of Specimen List Editor menu configurable
- As we do have the Specimen Tree Editor now the Specimen List Editor is not really needed anymore. Therefore it may ma...
- 03:52 PM bug #9060 (Closed): NPE in termsearch
- works as expected
- 03:41 PM feature request #9064 (Resolved): Add ExternalLinks to IdentifiableEntities
- 01:03 AM feature request #9064 (Closed): Add ExternalLinks to IdentifiableEntities
- 03:39 PM Revision 20c5d67d (taxeditor): fix #8958: add string representation of publication date if it differs from year
- 02:10 PM feature request #9067 (In Progress): [DISCUSS] Allow media to support external links not being files
- 02:10 PM feature request #9067: [DISCUSS] Allow media to support external links not being files
- I preliminary added an attribute link (ExternalLink) to Media class to be able to immediately support solutions 3 or ...
- 01:57 PM feature request #9067 (Closed): [DISCUSS] Allow media to support external links not being files
- The current handling of media expects that links stored in Media(RepresentationPart) are media files or can be opened...
- 01:16 PM feature request #9031 (Closed): Adapt CdmLightExport to new TaxonNode.status
- checked the cdmlight result and the doubtful flag is correctly set.
- 12:41 PM feature request #9031 (Resolved): Adapt CdmLightExport to new TaxonNode.status
- 12:40 PM feature request #9031 (New): Adapt CdmLightExport to new TaxonNode.status
- Andreas Müller wrote:
> WGB:
>
> um die Kompatibilität zu gewährleisten, wäre mir hier die zusätzliche Einfühurun... - 12:40 PM feature request #9031 (Resolved): Adapt CdmLightExport to new TaxonNode.status
- Applied in changeset commit:cdmlib|38adedb9c022a407c44338aa1798051015b46321.
- 12:42 PM Revision d4c861e5 (cdmlib): fix #9031: add doubtful column to taxon table
- 12:41 PM Revision 38adedb9 (cdmlib): fix #9031: add doubtful column to taxon table
- 12:31 PM Revision 39ffe267 (cdmlib): ref #9065: add preference predicate for specimen list editor
- 12:26 PM Revision a0257f6e (taxeditor): fix #9066: visibility of specimen list editor configurable
- 11:18 AM feature request #9065 (Closed): Add derived unit media to DerivedUnitFacade details view
- For the workflow of adding typification or any other specimen data to a taxon/name it is often necessary to add also ...
- 09:21 AM feature request #9032 (In Progress): Implement Feature.availableFor in TaxEditor
- the details view and the featureTree creation is implemented, but the preference page needs to be adapted, because th...
- 08:58 AM bug #9016: Adding specimen without field unit fails
- Andreas Müller wrote:
> so I guess we can put it to resolved?
yes, please review - 08:43 AM bug #9016 (Resolved): Adding specimen without field unit fails
- so I guess we can put it to resolved?
- 08:47 AM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- On the above test page I could not find any example with status **notes**. Is this implemented already? If yes, is th...
06/11/2020
- 11:02 PM bug #9016: Adding specimen without field unit fails
- This is fixed. For example for Aporocactus flagelliformis (L.) Lem. in caryophyllales_spp there are two specimen with...
- 10:59 PM Revision 0e5f03a0 (cdmlib): avoid cycle in loadFieldUnitDto
- 07:41 PM Revision 51788caf (cdmlib): ref #9032: add FeatureDto - continue
- 07:24 PM Revision 8a44985c (cdmlib): avoid cycle in getFieldUnitDto
- 07:22 PM Revision 50d185e6 (cdmlib): avoid NullPointerExceptions
- 07:19 PM Revision 05771712 (cdmlib): ref #8857: adapt handling of status notes while taxon creation
- 07:16 PM Revision 62d28a57 (cdmlib): ref #9032: add FeatureDto
- 07:12 PM Revision 5f19340f (taxeditor): handle terms without vocabulary
- 07:08 PM Revision 7cbd337d (taxeditor): ref #9032: adapt featureTree creation to isAvailableFor
- 05:10 PM bug #5601: Creation of local database structure via remoting
- As the description says "can be created automatically in the same way **as it was possible in standalone**" .
And " ... - 05:08 PM Revision 5499d5e4 (cdmlib): ref #9032: fix isAvailableForTaxon
- 05:02 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- difficult to say. Maybe we can put the result of toString in brackets behind the year, if and only if the result diff...
- 12:34 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- so I would keep it like it is?
- 02:11 PM Revision 25c76819 (taxeditor): ref #9032: add available for in feature details view
- 12:33 PM bug #8806 (Worksforme): Multiple representations problem on saving Desriptive Data Set
- this seems to be fixed with one of the other fixes in character matrix and descriptive dataset editor
- 12:30 PM Revision ddb074af (taxeditor): ref #8785: fix enable/disable sourcetype selection
- 12:29 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> Is this ticket ready for review or are there open issues (beside the known PK-Generation iss... - 12:27 PM Revision e895826c (cdm-server): ref #7085 better logging configuration and improved init script
- 12:27 PM bug #9029 (Closed): Adapt character matrix to using dtos instead of whole cdm entities
- this is fixed.
- 12:05 PM Revision b7797c35 (taxeditor): ref #9033: handling of status notes
- 12:04 PM bug #9063: Detailsview for MediaSpecimen broken
- please review.
- 12:00 PM bug #9063 (Resolved): Detailsview for MediaSpecimen broken
- Applied in changeset commit:taxeditor|c198e9650016b7456fc0d12d3cdda3f1526cb7c0.
- 11:59 AM bug #9063 (Closed): Detailsview for MediaSpecimen broken
- The detailsview for MediaSpecimen are broken.
- 12:03 PM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
- now the notes are removed, but remembered till the wizard is closed and the taxon node saved. please review.
- 12:02 PM Revision c198e965 (taxeditor): fix #9063: fix details view for media specimen
- 09:40 AM Revision 93078a32 (cdmlib): ref #9060: check whether termtype is null in term search
06/10/2020
- 11:59 PM Revision 50b59f77 (cdmlib): cleanup
- 11:09 PM Revision 66f2a16f (cdmlib): fix #9009 fixing test schemas for MediaMetaData
- 10:42 PM Revision b3085974 (taxeditor): ref #9005 , ref #9036 remove flags from TaxonNode in TaxEditor test data
- 10:25 PM Revision b4dd2f63 (cdm-server): adapting jsp to removal of JvmManager.getMetaSpaceUsage()
- 05:43 PM Revision 8881fca1 (cdm-server): ref #7085 adapting debian package - 2
- 05:39 PM Revision 5544ff88 (cdm-vaadin): update vaadin test H2
- 05:38 PM feature request #9009 (Resolved): Add structure to store media metadata
- Applied in changeset commit:cdmlib|72032e8369286b8e52207a4ed1ed0443e416b72a.
- 02:57 PM feature request #9009 (In Progress): Add structure to store media metadata
- 05:37 PM Revision ee0f2cda (cdmlib): update remote-webapp test H2
- 05:37 PM Revision 8147e611 (cdmlib): fix #9009 add MediaMetaData (cont.)
- 05:37 PM Revision c4d4c070 (cdmlib): cleanup and version handling
- 05:37 PM Revision 72032e83 (cdmlib): fix #9009 add MediaMetaData
- 05:37 PM Revision dc73d376 (cdmlib): ref #9036, ref #9037 remove old boolean columns
- 05:35 PM Revision e6af104c (taxeditor): update TaxEditor test H2
- 04:49 PM Revision 0c5f74e6 (cdm-server): ref #7085 adapting docker files and debian package to changes
- 04:46 PM task #9062 (Closed): Remove StatisticalMeasurementValue.value_old
- To finalize #8978
- 04:00 PM Revision e1944271 (cdm-server): ref #7085 removing obsolete attribute which is no longer used in the LoggingConfigurer
- 03:59 PM Revision 20884bdb (cdmlib): ref #7085 removing obsolete code from LoggingConfigurer
- 03:29 PM Revision 67d0c188 (cdm-server): renaming remote debug launcher
- 03:28 PM Revision 9526e8ec (cdm-server): ref #7085 adapting ide launch configs
- 03:23 PM Revision 72ddab96 (cdm-server): ref #7085 using logback MDC for centralized logging into a rolling file appender and to system out
- 01:49 PM task #9037 (Resolved): Remove old Feature.supportedXXX columns
- 01:49 PM task #9036 (Resolved): Remove old TaxonNode.unplaced/doubtful/excluded columns
- 01:21 PM Revision 5860ccc6 (cdmlib): minor
- 01:20 PM Revision 9a666f9e (cdmlib): ref #9061 a very first try to create an import analyzer framework (with example AltitudeExcelImport)
- 01:15 PM bug #9061 (New): Create analyze framework for CDM Excel imports
- This framework should allow to analyze import data before running the import.
This should include
* analyzeWork... - 01:02 PM Revision e71582e2 (cdmlib): ref #9041 improve AltitudeExcelImport
- 12:54 PM Revision e765eb50 (taxeditor): cleanup
- 12:54 PM bug #5710 (Feedback): Changing the database connection must reset all caches
- This is not yet fixed as we watched in the past multiple times that switching between instances created serious probl...
- 12:48 PM Revision fdb1753a (taxeditor): ref #5710 run term reset on all Term classes
- 12:48 PM Revision 2a2b894f (taxeditor): cleanup
- 12:02 PM feature request #9038 (Resolved): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- now the entered text is checked by a regular expression, please review.
- 01:35 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Please be aware of #9059 when testing this
- 01:20 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Another open issue:
if the scale or the precision is not according to the possible precisions/scales the data is n... - 01:07 AM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Katja Luther wrote:
> now the incorrect state is not cleared, but the value is not stored. I had a look how it is ha... - 12:01 PM Revision 74c3df2a (taxeditor): fix #9060: fix NPE in term search
- 11:59 AM bug #9060: NPE in termsearch
- this should be fixed, please review
- 11:58 AM bug #9060 (Resolved): NPE in termsearch
- Applied in changeset commit:taxeditor|74c3df2a4568e1e35a994b99443381d24b32f0ea.
- 11:56 AM bug #9060 (Closed): NPE in termsearch
- In term search throws NPE:
~~~ text
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/rem... - 11:56 AM Revision d002d872 (taxeditor): ref #9038: check value with regex if fit in BigDecimal
- 10:18 AM Revision c21683a2 (cdmlib): cleanup
- 10:17 AM task #6021 (Rejected): Add 'mention' functionality
- 09:56 AM task #6008: Fix broken UTF-8 characters
- This is still an open issue and should be fixed
- 09:55 AM bug #6007 (Worksforme): Redmine: Wiki tables are not correctly mapped to new syntax
- many tables have been fixed manually, so there is no more need for general action on this topic.
The above linked... - 09:40 AM bug #5601 (Feedback): Creation of local database structure via remoting
- Andreas Müller wrote:
> This is probably fixed with #9025 . Still need to test if it really works with H2.
So thi... - 12:40 AM bug #5601: Creation of local database structure via remoting
- This is probably fixed with #9025 . Still need to test if it really works with H2.
- 09:30 AM Revision be22ce7d (taxeditor): fix #9059: clear featureNodeContainerCache when closing NameEditor
- 09:29 AM bug #9059: Cancel taxon save does not clean the (factual data) cache
- this should be fixed, please review.
- 09:28 AM bug #9059 (Resolved): Cancel taxon save does not clean the (factual data) cache
- Applied in changeset commit:taxeditor|be22ce7df518ffa44a2ac886d8b4f84fd4497227.
- 01:34 AM bug #9059 (Closed): Cancel taxon save does not clean the (factual data) cache
- What I did:
* open a taxon in name editor
* change an existing fact
* close name editor without saving
* reopen... - 08:37 AM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- mail WB:
Hello,
my use cases for display of the publication year right now are
(i) the selection of nom. referen... - 01:44 AM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
- Generally this works now. I only wonder if it is really wanted to only show the year. In case of a freetext date noth...
- 01:38 AM bug #8903 (Closed): Remember expansion state in factual data view
- works now
06/09/2020
- 11:54 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
- Now existing notes are not deleted if the status is set to null. This is the typical problem that you may not want to...
- 10:15 AM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
- Andreas Müller wrote:
> This is mostly fixed. 2 remaining issues:
>
> * rename label "status" to "placement stat... - 11:36 PM Revision 88d9400d (cdmlib): cleanup
- 11:35 PM bug #9058 (Resolved): Hibernate loggs error when creating schema on MySQL due to failing index creation
- 04:20 PM bug #9058: Hibernate loggs error when creating schema on MySQL due to failing index creation
- Some further links:
* https://stackoverflow.com/questions/46156953/how-to-resolve-specified-key-was-too-long-max-... - 03:59 PM bug #9058 (In Progress): Hibernate loggs error when creating schema on MySQL due to failing index creation
- Strange is that on some systems this is only logged as warning while others do throw an exception. I did not yet find...
- 11:34 AM bug #9058 (Closed): Hibernate loggs error when creating schema on MySQL due to failing index creation
- Errors are like:
~~~
ERROR [main][or.hi.to.hb.SchemaExport:484] - HHH000389: Unsuccessful: create index agentTitl... - 10:38 PM feature request #8464: Make AuthorityBases unique
- In #9058 a very similar problem was solved. For doing the same thing for this index (which is a unique index not a si...
- 10:24 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- Yes, the refactoring was not fully ready. Can you please try again if the above problems still appear?
- 05:10 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- another problem:
4) Taxeditor SNAPSHOT version: Open connect dialog, The dialog initially tries to connect the **d... - 03:55 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- reviewing your changes I found the following issues:
1) In case of an empty DB the following notification is shown... - 10:22 PM Revision 7c5d32fa (taxeditor): adapting layout in RemotingLoginDialog
- 09:23 PM Revision bb9cba6b (taxeditor): ref #9025 improve localhost mgd. handling (cont.)
- 07:33 PM Revision 3b8b41d9 (taxeditor): cleanup
- 06:31 PM Revision e1aeb4ac (taxeditor): ref #9025 improve localhost mgd. handling (cont.)
- 06:21 PM bug #4300 (Worksforme): Authority form does not work under Windows
- Operation Checkboxes in the Authority Form do now work in windows 10.
I have no idea how and when this was fixed, ... - 06:02 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- from the diagrams it really looks like this problem is fixed. Can you please link the `rowWrappers`-Ticket with this ...
- 05:55 PM bug #9020 (Closed): add default role Allow_for_all_taxa (TAXONNODE.[CREATE,READ,UPDATE,DELETE])
- The new PermissionGroup has been created in all old databases on edit-int, so this issue is fully solved.
- 04:56 PM bug #7189 (Resolved): Taxeditor connect dialog high-dpi suport
- I consider this as fixed, please review.
- 03:24 PM bug #7189: Taxeditor connect dialog high-dpi suport
- I think we just should remove all this programmatic setting of font sizes as they are centrally managed via the setti...
- 03:16 PM bug #7189: Taxeditor connect dialog high-dpi suport
- Im code ist mir aufgefallen dass Cherian die Ubuntu Fontfamilie verwendet. ich nehme an um die Schriftgröße setzen zu...
- 11:14 AM bug #7189: Taxeditor connect dialog high-dpi suport
- Andreas Kohlbecker wrote:
> this issue is mainly fixed. Only the width of the comboboxes is a bit too wide.
>
> *... - 04:49 PM Revision 20f5abe9 (taxeditor): ref #7189 resetting remote login dialog to default font sizes
- 04:49 PM Revision 592cf090 (taxeditor): project setup running faster without integration tests
- 04:22 PM Revision 15bf6961 (cdmlib): fix #9058 fix failing index creation for ordinary MySQL key indexes and remove combined unique key for AuthorityBase
- 04:22 PM Revision 9e1278e0 (cdmlib): minor
- 04:12 PM bug #8662 (Closed): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
- Andreas Müller wrote:
> If the tree list is empty it works now as expected.
>
> >Auch wenn Taxa existieren, wird ... - 03:02 PM feature request #9023 (Closed): option to start cdm webapp with hibernate.hbm2ddl.auto = create
- this works now as expected
- 03:00 PM bug #8994 (Closed): universal image viewer fails loading libs when clean urls is disabled
- tested on the test server and no problems found.
- 02:55 PM feature request #9034: simple agent list page with filter function
- Suggestion for a more compact layout:
~~~
Li, Y. [Yang Li] , fl. 2018 (Family name: Li, Given name: Yang) https:/... - 02:47 PM Revision de12b95b (cdm-dataportal): ref #9010 changing label to 'Placement status' - adapting tests
- 02:34 PM feature request #9010 (Closed): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- All suggested improvements are now implemented.
I've chosen to keep the label and to replace "Classificatorical stat... - 02:31 PM Revision 31bb0452 (cdm-dataportal): ref #9010 changing label to 'Placement status'
- 02:29 PM Revision fe169cb6 (cdm-dataportal): ref #9010 taxon node status only for taxon general and synonymy tab
- 02:20 PM Revision e6381e99 (taxeditor): ref #9038: use QuantitativeDataFormatter for formating the label
- 02:02 PM Revision 1b62dc9a (cdmlib): revert changes in DefaultDescriptionBuilder
- 02:02 PM feature request #9038 (Resolved): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Changed from DefaultQuantitativeDescriptionBuilder to QuantitativeDataFormatter to create the label string. If the ha...
- 01:57 PM Revision b339aef7 (cdm-dataportal): ref #6878 switching theme to noto sans and mono - compiling sass files to css
- 01:56 PM feature request #6878 (Resolved): choose a base font for the portal and deliver it from the drupal module or theme
- * Umstellen des zen_dataportal themes auf Noto Sans - DONE
* Installation der dazu passenden Noto Mono - DONE
* En... - 01:55 PM Revision f758df66 (cdmlib): ref #9038: fix formatter for exact values
- 01:53 PM Revision 1fde1200 (cdm-dataportal): ref #6878 switching theme to noto sans and mono
- 11:20 AM bug #8903 (Resolved): Remember expansion state in factual data view
- this should be fixed now.
- 11:19 AM bug #8954 (Closed): Details and Supplemental Data View do not save the expansion state of sections again
- OK, I moved the factual data issue to a new ticket #9057
- 10:34 AM bug #8954: Details and Supplemental Data View do not save the expansion state of sections again
- Andreas Müller wrote:
> For the supplemental data view and the details view the behavior seems to be fixed.
>
> D... - 11:17 AM feature request #9057 (New): Remember expansion state in factual data view when changing focus
- The details view and the supplemental data view remember their expansion state when the focus changes. This is not ye...
- 11:12 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Is this ticket ready for review or are there open issues (beside the known PK-Generation issues which we should move ...
- 10:56 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- the key generation is also moved to the context menu and the buttons are removed now. The funtionality of key generat...
- 10:56 AM Revision 59d57d1a (taxeditor): revert removed Element import
- 10:55 AM Revision 4649a39b (taxeditor): ref #8785: move generation of polytomous key to context menu
- 10:27 AM Revision 93bca431 (taxeditor): fix #8958: show year of the inreference if no publication year is available
- 10:25 AM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
- Applied in changeset commit:taxeditor|93bca431d69ab3aab0080702d425bc1523cbf0f1.
- 10:16 AM Revision 6bc0bc7f (taxeditor): ref #9033: adapt labels
- 09:03 AM bug #9047 (Closed): Search does not return orphaned synonyms
- 03:04 AM Revision b69e7618 (taxeditor): cleanup
- 02:31 AM Revision 74b3870f (taxeditor): cleanup
- 02:31 AM Revision 07a97068 (taxeditor): ref #9025 improve localhost mgd. handling (cont.)
- 02:20 AM Revision 318ecd36 (taxeditor): ref #7432 show default login data only if server is localhost mgd.
- 02:19 AM feature request #7432 (In Progress): Show default login only if the account has not been changed
- Implemented now that default login is shown only for localhost mgd. (v 5.15)
- 02:13 AM Revision cd900bac (taxeditor): cleanup
- 02:12 AM Revision 5a20c932 (taxeditor): ref #9025 improve localhost mgd. handling for schema create and update and some general minor improvements and refactorings
06/08/2020
- 04:26 PM Revision 8034ad47 (taxeditor): revert unwanted RemotingLoginDialog changes
- 04:25 PM Revision 40a41f9f (taxeditor): cleanup
- 04:17 PM feature request #9010 (In Progress): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- Andreas Müller wrote:
> On the taxon page in the tabbed version I would move the text above the tabs (immediately be... - 04:11 PM Revision 5d5e74b3 (taxeditor): ref #7189 fixing layout issues with empty cells in grid
- 03:37 PM feature request #9022 (Resolved): Implement lifespan for Person Details View
- 03:35 PM feature request #9022 (In Progress): Implement lifespan for Person Details View
- The lifespan is added to the details view of persons, this is fixed, but there is a general problem with the time per...
- 03:34 PM bug #9056 (New): Entering a year in timeperiod element recalculates the dimension of the textfields in strange way
- see #9022#note-3
- 03:24 PM Revision 4f8dbab4 (taxeditor): ref #9022: add lifespan to person detail element
- 02:44 PM Revision 65e24b3f (cdm-server): remove PERM_GEN_SPACE handling as we are only using Java8 or higher now
- 02:43 PM Revision ea1f5604 (cdm-server): cleanup
- 02:22 PM bug #8857 (Feedback): NonUniqueObjectException when creating new taxon
- 01:57 PM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- Katja Luther wrote:
> The label issue is caused by the DefaultQuantitativeDescriptionBuilder because exact values ar... - 11:28 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- now the incorrect state is not cleared, but the value is not stored. I had a look how it is handled for urls and the ...
- 10:20 AM feature request #9038 (In Progress): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- The label issue is caused by the DefaultQuantitativeDescriptionBuilder because exact values are not handled.
- 01:56 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- I can't reproduce it when starting from workspce, I will try it again with nightly build.
- 10:47 AM bug #8959 (Feedback): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- 01:49 PM bug #9047: Search does not return orphaned synonyms
- Katja Luther wrote:
> ah, you are right, but then I think it should be "LEFT JOIN s.acceptedTaxon as t".
no the t... - 01:45 PM bug #9047: Search does not return orphaned synonyms
- Andreas Müller wrote:
> Katja Luther wrote:
> > I think the left join is not necessary because only the id of the s... - 11:29 AM bug #9047 (Resolved): Search does not return orphaned synonyms
- Katja Luther wrote:
> I think the left join is not necessary because only the id of the synonyms/taxa are collected ... - 09:55 AM bug #9047 (Feedback): Search does not return orphaned synonyms
- I think the left join is not necessary because only the id of the synonyms/taxa are collected in the sql query, but t...
- 01:42 PM Revision 337ce83b (cdm-vaadin): adapt vaadin to new package structure for persistence.permission
- 01:40 PM Revision c41ac60d (taxeditor): adapt TaxEditor to new package structure for persistence.permission and format.description and some cleanup
- 12:55 PM Revision 2c3a8489 (taxeditor): cleanup
- 12:44 PM Revision 376b705d (cdmlib): remove "hibernate" from permission packages (cont.)
- 12:38 PM Revision afbe7dc1 (cdmlib): remove deprecated constant from DataSourceConfigurer
- 12:37 PM Revision 314ef479 (cdmlib): cleanup
- 12:37 PM Revision 7801652a (cdmlib): ref #9038 move DescriptionBuilder to model.format
- 12:09 PM Revision 2057ea02 (cdmlib): remove "hibernate" from permission packages
- 12:09 PM Revision 8126fe37 (cdmlib): cleanup
- 11:22 AM Revision 3d126815 (taxeditor): ref #9038: do not set big decimal value to 0.0 if field is cleared
- 11:01 AM Revision 95c53d84 (cdmlib): ref #9038: add exact value to DefaultQuantitativeDescriptionBuilder
- 09:51 AM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- I am currently reviewing this issue (and implementing some further improvements)
- 09:43 AM bug #9052 (Closed): NPE in name details view for incomplete name relationships
- works.
06/07/2020
- 05:05 PM Revision 26fa5566 (cdm-server): cleanup
- 04:52 PM Revision 134010c7 (cdm-vaadin): set maven min prerequisites to 3.2.3
- 04:51 PM Revision d74bd173 (taxeditor): set maven min prerequisites to 3.2.3
- 04:49 PM Revision 6a382ddb (cdmlib): set maven min prerequisites to 3.2.3
- 12:53 PM Revision d01ab6ad (taxeditor): cleanup
06/05/2020
- 11:31 PM Revision d60221b5 (taxeditor): rename CdmServerUtils, CdmServerException and CdmEmbeddedServerException
- 09:10 PM Revision 0593eae4 (taxeditor): cleanup
- 09:06 PM Revision 9e11ba43 (taxeditor): use new non-test version of SecurityExceptionUtils in MessagingUtils
- 08:52 PM Revision db551522 (cdmlib): make SecurityExceptionUtils available in non-test environments (required by TaxEditor)
- 08:46 PM Revision 5e6cda43 (cdmlib): cleanup
- 07:53 PM Revision cc2d6de7 (taxeditor): remove cdmlib-test from build.properties
- 07:50 PM Revision 752d17aa (taxeditor): remove cdmlib-test from MANIFEST
- 07:50 PM Revision 2661173a (taxeditor): cleanup
- 07:40 PM Revision d5f33b4c (taxeditor): minor
- 07:39 PM Revision f8c40685 (taxeditor): ref #8785: adapt aggregation wizard, add aggregation to context mennu
- 07:04 PM Revision 930a6a58 (taxeditor): remove some dependencies from taxeditor.cdmlib/pom.xml
- 06:33 PM Revision d503eb16 (taxeditor): remove unitils from TaxEditor cdmlib dependencies as they are needed only for tests
- 06:13 PM Revision 0510635b (cdmlib): further cleanup TaxonNodeFilter
- 03:05 PM Revision c1ea474d (cdmlib): fix null handling in QuantitativeData.NewMinMaxInstance
- 02:58 PM Revision cd2dc972 (cdmlib): cleanup
- 02:58 PM Revision 38a94319 (cdmlib): make TaxonNodeFilter constructors private, use factory methods instead.
- 11:50 AM Revision ab0702a9 (taxeditor): cleanup
- 10:40 AM bug #9055 (Closed): Relabel "Type Designation" to "Type Information"
- looks fine.
06/04/2020
- 05:12 PM bug #9055: Relabel "Type Designation" to "Type Information"
- I fixed this. Please review.
- 05:05 PM bug #9055 (Resolved): Relabel "Type Designation" to "Type Information"
- Applied in changeset commit:taxeditor|8886565aa01ea7b0a0d2577a199e3cce70554023.
- 12:32 PM bug #9055 (Feedback): Relabel "Type Designation" to "Type Information"
- in Name Details View.
This is because textuell type designations are usually no desingations but only information ... - 05:05 PM Revision 8886565a (taxeditor): fix #9055 relabel type designation => type information
- 04:53 PM bug #9053 (Closed): CCE when selecting Character Tree for descriptive dataset
- Fixed
- 09:39 AM bug #9053: CCE when selecting Character Tree for descriptive dataset
- please review
- 09:37 AM bug #9053 (Resolved): CCE when selecting Character Tree for descriptive dataset
- Applied in changeset commit:cdmlib|e0e63b180e28c4bcd085c31ac6055d117aea00de.
- 08:57 AM bug #9053: CCE when selecting Character Tree for descriptive dataset
- The same problem occurs when selecting a character tree in the Character Editor.
- 08:48 AM bug #9053 (Closed): CCE when selecting Character Tree for descriptive dataset
- ~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/termtree.service
last remote r... - 03:04 PM Revision 9370d21c (taxeditor): #8785: move aggregation to context menu
- 11:52 AM Revision d4c5694c (taxeditor): minor
- 11:40 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> Andreas Müller wrote:
> > An important open issue is that it is currently not possible to add... - 09:54 AM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- 09:41 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Andreas Müller wrote:
> An important open issue is that it is currently not possible to add a "literature"- or a "de... - 09:25 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Also the buttons "Aggregation" and "Generate Polytomous Key" should be handled in the menu, not as separate buttons. ...
- 09:22 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- An important open issue is that it is currently not possible to add a "literature"- or a "default"-description for a ...
- 09:19 AM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
- "Add description" is still missing a translation. Also I think we should call it "Add specimen description" because i...
- 11:39 AM Revision 08332188 (cdmlib): ref #9029: merge needs to handle all kind of descriptions
- 11:39 AM feature request #9054 (New): Allow adding taxon descriptions to matrix for taxa which have no specimen descriptions attached yet
- Currently only taxa are shown which do have speciemn descriptions attached. This is not correct because it should als...
- 09:54 AM bug #8754 (Feedback): DescriptionElements are not deleted with the Descriptive Data Set
- Generally I have problems to understand this ticket.
Do I understand it correctly that the expectation is that del... - 09:32 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- When trying to delete a descriptive dataset I got the following exception. Though it seems as if the delete was execu...
- 09:38 AM Revision e0e63b18 (cdmlib): fix #9053: differ between SortableTaxonNodeQueryResult and simple uuidAndTitleCache
- 09:29 AM Revision c2fb4bcf (taxeditor): ref #8785: add translation for add description
- 12:13 AM bug #8662 (Feedback): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
- If the tree list is empty it works now as expected.
>Auch wenn Taxa existieren, wird das Kontextmenü angezeigt und...
06/03/2020
- 11:34 PM feature request #7774 (Closed): Show description source for description elements
- Works as expected. Nice feature.
- 11:25 PM bug #8969 (Closed): Multiple deduplications are not executed
- Seems to work as expected.
- 11:15 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- The problem still exists if you directly click on the moved synonym. If you click on another name and back again the ...
- 06:07 PM Revision 45e6c867 (taxeditor): ref #8785: tabel does not need to be configured completely new for new specimen
- 06:06 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> There is still big one open issue: adding the first specimen does not work by context menu bec... - 05:34 PM Revision 31b2a7eb (taxeditor): ref #8903: fix exception in deletehandler
- 04:54 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- Andreas Müller wrote:
> "Classificatorical states" should be "Placement status" as "classificatorical" does not seem... - 04:48 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- I added "show taxon node status note" to the ticket titel as this task is strongly related (see also #9005)
- 04:36 PM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- "Classificatorical states" should be "Placement status" as "classificatorical" does not seem to be English word (I co...
- 04:27 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- On the taxon page in the tabbed version I would move the text above the tabs (immediately below the title). Now it ap...
- 02:49 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- In classification tree it looks fine
- 01:28 PM bug #8961 (Closed): Using the selection dialogue for nomenclatural references removes the recently used list
- Seems to work as expected.
- 01:24 PM bug #9052: NPE in name details view for incomplete name relationships
- Please review
- 01:23 PM bug #9052 (Resolved): NPE in name details view for incomplete name relationships
- Applied in changeset commit:taxeditor|afbd7a15f92a835d0c5da1dc48f9fa20b3dd1235.
- 01:22 PM bug #9052 (Closed): NPE in name details view for incomplete name relationships
- ~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/term.service
last remote reque... - 01:23 PM Revision afbd7a15 (taxeditor): fix #9052 fix NPE for name details view name relationships
- 01:20 PM Revision 1c9ede79 (taxeditor): cleanup
- 12:32 PM bug #8903: Remember expansion state in factual data view
- For SpecimenDescriptions it seems to work as expected.
- 12:24 PM bug #8903 (Feedback): Remember expansion state in factual data view
- When testing on TaxonDescriptions I got an CCE:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/r... - 12:19 PM bug #8954 (Feedback): Details and Supplemental Data View do not save the expansion state of sections again
- For the supplemental data view and the details view the behavior seems to be fixed.
Did you also work on the factu... - 11:49 AM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
- Generally this works. Only the year should be improved as the year from sections like book sections might be taken fr...
- 11:44 AM bug #9051 (New): Role Project manager should not have right to edit users and creating a new user with missing rights results in two message-boxes
- mail AM:
Außerdem kommt nach dem Versuch einen User anzulegen, ohne dass man die Rechte dazu hat, erst ein normale... - 11:38 AM bug #8962 (Closed): Handle widget is disposed after closing Supplemental Data View
- I don't know how to review this exactly. The code looks ok as far as I can decide this.
- 11:15 AM bug #9050 (New): Context menu item new should be disabled for missing rights
- For users without the right to create a new user the context menu of the user bulk editor should be adapted and the n...
- 10:45 AM bug #8963 (Closed): Selection dialogues should be modal
- Seems to work as expected.
- 10:35 AM bug #8999 (Closed): Verbatim date not persisted for books
- Works as expected.
- 10:22 AM bug #9045 (Closed): TextualTypeDesignation throws exception in referencing objects view
- I tested with name "Orphaned syn" on rem_conf_am. Code and result is trivial so I close this ticket.
- 10:19 AM bug #9047: Search does not return orphaned synonyms
- I tested on rem_conf_am with "Orphaned syn*" . It seems to work. I change category as this is a general cdmlib issue...
- 10:16 AM feature request #8988 (Closed): Add link button to DOI field for references
- Works as expected
- 10:15 AM bug #9035 (Closed): Reference details view throws NPE
- This is fixed. As it was only a temporary regression during 5.15 development I remove the target version.
06/02/2020
- 12:17 PM bug #9049 (Closed): Import Flora of Uzbekistan taxa habitats
- 11:18 AM Revision ec658daf (cdmlib-apps): ref #9041 UzbekistanAltitudeActivator added
- 11:08 AM feature request #9048 (New): Checking number of synonyms when paste them into name editor
- mail WB:
ist mir schon passiert und war auch, glaube ich, schon mal Thema:
Eine Funktion, die beim Einfügen von S... - 09:40 AM Revision af1161e4 (cdmlib): ref #9041 first incomplete version for AltitudeExcelImport
- 09:38 AM Revision 0ab19716 (cdmlib): cleanup
05/29/2020
- 03:37 PM bug #9047 (Resolved): Search does not return orphaned synonyms
- Applied in changeset commit:cdmlib|ea076318550ed467dd48afce88d5f3929ba20d99.
- 02:34 PM bug #9047 (In Progress): Search does not return orphaned synonyms
- 02:34 PM bug #9047 (Closed): Search does not return orphaned synonyms
- A name which is currently only used in a synonym which has no accepted taxon (which is dirty data but exists) is curr...
- 03:37 PM Revision 25dd1e4d (cdmlib): cleanup
- 03:36 PM Revision ea076318 (cdmlib): fix #9047 fix search does not return orphaned synonyms
- 11:35 AM Revision 22f969ca (cdmlib): ref #9043 allow "altitude" also for specimens
- 11:31 AM Revision e7e33306 (taxeditor): fix #9045 fix missing from part type designations (cont.)
- 11:29 AM bug #9045 (Resolved): TextualTypeDesignation throws exception in referencing objects view
- Applied in changeset commit:taxeditor|c8dc4e4acf4326bc6bd6c265e8f6b73f35d48d22.
- 11:22 AM bug #9045 (Closed): TextualTypeDesignation throws exception in referencing objects view
- ~~~
last remote method : http://api.cybertaxonomy.org:80/caryophyllales_spp/remoting/common.service
last remote req... - 11:29 AM Revision c8dc4e4a (taxeditor): fix #9045 fix exception in DescriptionHelper for TextualTypeDesignations and fix missing from part type designations
- 11:14 AM bug #8849: NPE in synonym DetailsViewer for synonyms without accepted taxon
- I solved the NPE now in a way that synonyms without accepted taxon are not checked for subtree permission (as they si...
- 11:10 AM bug #8849 (Resolved): NPE in synonym DetailsViewer for synonyms without accepted taxon
- Applied in changeset commit:taxeditor|cd5fdc98f90ec4d26348a785e4c70369144f28f0.
- 11:09 AM Revision cd5fdc98 (taxeditor): fix #8849 fix NPE for synonyms without accepted taxon in details view and some code cleaning
05/28/2020
- 10:18 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > I added getSymbol() to TaxonNodeStatus
>
> Woudn't it make... - 10:14 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
- Symbol is now handled in cdmlib, however we still want to find better symbols and a way how to show them in TaxEditor...
- 03:18 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
- Andreas Müller wrote:
> I added getSymbol() to TaxonNodeStatus
Woudn't it make sense adding `getSymbol()` to `IKe... - 01:05 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
- I added getSymbol() to TaxonNodeStatus
- 10:07 PM feature request #9003 (Duplicate): Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
- As this is handled in cdmlib now we can close the ticket as duplicate as explained above.
- 05:16 PM feature request #9003 (Resolved): Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
- this has been implemented in cdmlib, so I am changing the category.
You can close this issue. - 01:06 PM feature request #9003: Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
- I added getSymbol() to TaxonNodeStatus
- 05:40 PM Revision 64aca903 (cdm-dataportal): ref #9010 showing taxon node status symbols in the taxon tree - adding space
- 05:28 PM feature request #9034 (In Progress): simple agent list page with filter function
- 05:28 PM feature request #9044 (Closed): TaxonNodeDtoBeanProcessor supports new TaxonNodeStatus terms
- 04:37 PM feature request #9044 (Resolved): TaxonNodeDtoBeanProcessor supports new TaxonNodeStatus terms
- Applied in changeset commit:cdmlib|6372bb731bbe9a30d3f6059cd387ad2c6540cff1.
- 03:37 PM feature request #9044 (Closed): TaxonNodeDtoBeanProcessor supports new TaxonNodeStatus terms
- The TaxonNodeDtoBeanProcessor needs to include the TaxonNodeStatus see #9005
- 05:26 PM feature request #9042: EnumTerm symbol and message in web service response
- [a.mueller]:
Modellseitig sollten die Enums sehr ähnlich wie Terme gehandelt werden (eigentlich sind es fixe Term... - 05:25 PM feature request #9042: EnumTerm symbol and message in web service response
- ich überlege hin und her wie wir das am besten machen:
1. Equivalent zu dem anderen Termen also als eigenes Obj... - 03:07 PM feature request #9042 (New): EnumTerm symbol and message in web service response
- Implementations of `IEnumTerm` may have a message in multiple languages and a symbol.
Implement a Json Bean proces... - 05:14 PM feature request #9010 (Resolved): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- This is solved, please see the genus Casus and subordinate taxa for examples:
http://int.e-taxonomy.eu/dataportal/... - 05:00 PM Revision fbbfd017 (cdmlib): ref #9042 removing EnumTermBeanProcessor to avoid compilation problems
- 04:45 PM bug #5371 (Worksforme): all name parts of taxa with flag doubtful = true are displayed in italic
- 04:44 PM bug #5371: all name parts of taxa with flag doubtful = true are displayed in italic
- The original problem may have been that the title cache was protected.
In general it works as expected:
![](p... - 04:38 PM Revision 9282ac6e (cdm-dataportal): ref #9010 showing taxon node status symbols in the taxon tree
- 04:36 PM Revision 6372bb73 (cdmlib): fix #9044 adding status data to TaxonNodeDto via the TaxonNodeDtoBeanProcessor
- 03:43 PM Revision 17d751c7 (cdmlib): ref #9042 Helper class to provide localizations for EnumTerms + premliminar implementation of an EnumTermBeanProcessor
- 03:32 PM feature request #9043 (Resolved): Add feature "Altitude"
- Applied in changeset commit:cdmlib|bef8e98cdb1edb01371fc28ca69723698abdbd84.
- 03:27 PM feature request #9043 (Closed): Add feature "Altitude"
- The feature is already available in FoCyprus with uuid "1a28ed59-e15f-4001-b5c2-ea89f0012671"
It is available for ... - 03:32 PM Revision bef8e98c (cdmlib): fix #9043 add feature Altitude
- 03:30 PM Revision d4f218f2 (cdm-dataportal): code cleaning
- 03:00 PM task #9041 (Closed): Import Flora of Uzbekistan taxa altitudes
- 02:57 PM task #8996 (Closed): Import Flora of Uzbekistan taxa
- 02:42 PM task #8996 (Resolved): Import Flora of Uzbekistan taxa
- Applied in changeset commit:cdmlib-apps|6b3b78d49baf84f10a5523b8aee575af4013a9d1.
- 02:50 PM Revision 1344691f (cdm-dataportal): ref #9034 agent search page: adding LISD ExtensionTypeTerm uuid
- 02:49 PM Revision 81f313f0 (cdm-dataportal): ref #9010 taxon node status display - adaptiong code to model change
- 02:42 PM Revision c911c118 (cdmlib-apps): ref #9005 adapt imports to new TaxonNode.status and status notes
- 02:41 PM Revision 6b3b78d4 (cdmlib-apps): fix #8996 latest changes to FoU import
- 02:28 PM Revision b39ec403 (taxeditor): cleanup
- 02:28 PM Revision 309c12be (taxeditor): ref #9002, ref #9005 use getSymbol() for TaxonNode.status in TaxEditor
- 01:47 PM feature request #9040 (Closed): Implement open button for ORCIDs
- ... similar to DOIs (#8988)
- 01:02 PM Revision 9ab63b7f (cdmlib): ref #9002 Add symbols to TaxonNodeStatus
- 12:40 PM Revision 11accf4d (cdm-dataportal): ref #9010 adapting tests to modified taxon node status model
- 11:59 AM Revision 65c85a5b (cdm-dataportal): ref #9034 agent search page: ŝhowing nomenclaturalTitle
- 11:58 AM bug #9039 (New): When canceling TaxEditor update no new versions are found anymore
- What I did:
I checked for updates and got the feedback that a new update was found.
Then I decided to first check... - 11:41 AM Revision a398fe87 (cdmlib): incuding TeamOrPerson.nomenclaturalTitle into web service responses
- 10:24 AM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
- for details see #8978
Man issues alread have been solved by bf20bbfd . Some issues did arise when I tested the new... - 09:52 AM Revision 7ef52eac (cdm-dataportal): ref #9034 simple agent search page with filter function by query parameter
- 09:49 AM Revision e2617c7e (cdm-dataportal): ref #9034 simple agent search page with filter function by query parameter
- 09:34 AM Revision db9c6559 (cdm-dataportal): ref #7770, ref #9034 fix settings to choose visible extension types, filter method for chosen extensions
- 08:29 AM Revision 75c1da8e (cdm-dataportal): ref #7770, ref #9034 settings to choose visible extension types
05/27/2020
- 11:04 PM feature request #8978: Implement measurement values as BigDecimal
- Update script works.
Still needs active testing with aggregation algorithm and polytomous key generator if algebra... - 04:45 PM feature request #8978: Implement measurement values as BigDecimal
- The adaption for the editor are done as well, please have a look.
- 11:00 PM task #9037 (In Progress): Remove old Feature.supportedXXX columns
- 10:58 PM task #9037 (Closed): Remove old Feature.supportedXXX columns
- 10:56 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
- This is mostly fixed. 2 remaining issues:
* rename label "status" to "placement status" to clearly distinguish fr... - 02:50 PM feature request #9033 (Closed): Adapt TaxEditor to new TaxonNode.status
- see alos #9005
The 3 checkboxes for unplaced, doubtful and excluded needed to be changed to a dropdown (or a radio... - 10:53 PM task #9036 (In Progress): Remove old TaxonNode.unplaced/doubtful/excluded columns
- 10:52 PM task #9036 (Closed): Remove old TaxonNode.unplaced/doubtful/excluded columns
- 10:51 PM feature request #9005 (Closed): Make the TaxonNode flags alternatives and change excluded notes to status notes
- Update script works and functionality tested in TaxEditor.
- 02:46 PM feature request #9005 (Resolved): Make the TaxonNode flags alternatives and change excluded notes to status notes
- 10:41 PM feature request #9027 (Closed): Implement Feature.availableFor
- Update script works as expected.
- 10:37 PM feature request #9026 (Closed): Implement Feature.supportedDataTypes as EnumSet
- The update script works as expected.
- 10:34 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- There is still big one open issue: adding the first specimen does not work by context menu because the context menu i...
- 12:18 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- 10:33 PM Revision ffeb89d3 (taxeditor): fix #9035: fix NPE in reference details
- 10:33 PM feature request #8991 (Resolved): Add feature "Flowering Period"
- Still need to check if supportsTemporalData is autoamtically created on production (on test and integration it is not...
- 10:10 PM feature request #8991 (Closed): Add feature "Flowering Period"
- Works, only on test server some terms are still labeled "Flowering Season" as no update script was written for these ...
- 10:32 PM bug #9035: Reference details view throws NPE
- this should be fixed, please review
- 10:31 PM bug #9035 (Resolved): Reference details view throws NPE
- Applied in changeset commit:taxeditor|ffeb89d337c49cbf09651d6fead3aeec6591725f.
- 07:59 PM bug #9035: Reference details view throws NPE
- Also in the nom. ref. label field the reference does not appear anymore. Don't know if this is related:
![](pictur... - 07:56 PM bug #9035: Reference details view throws NPE
- A similar error occurs when trying to edit the reference via the editing dialog (e.g. when opening the nomenclatural ...
- 07:53 PM bug #9035 (In Progress): Reference details view throws NPE
- As this is a serious regression it needs to be fixed asap.
- 07:52 PM bug #9035 (Closed): Reference details view throws NPE
- Using the reference bulk editor is not possible because when clicking on any reference the following NPE is thrown (p...
- 10:16 PM Revision 7f6f2415 (taxeditor): revert button for doi element because it produces NPE
- 10:14 PM feature request #8802 (Closed): Implement flowering period for Flora of Cyprus
- 09:43 PM bug #8964 (Closed): Improve label for homonym relationships
- Update script result tested on test server (for DB cdm_greece_bupleurum)
- 08:01 PM feature request #8988: Add link button to DOI field for references
- Review is blocked by #9035
- 08:00 PM bug #8999: Verbatim date not persisted for books
- Review is blocked by #9035
- 07:27 PM bug #8901: Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
- Is this fixed and should be reviewed?
- 06:40 PM Revision 8481f952 (taxeditor): cleanup
- 05:03 PM Revision b5f97760 (taxeditor): revert commented code in last commit
- 04:52 PM Revision 8982c548 (taxeditor): remove unused class QuantitativeDataStatistics
- 04:44 PM Revision c929d34b (taxeditor): ref #9033: adapt editor to taxonnode.status
- 04:35 PM Revision bf20bbfd (taxeditor): adapt editor to value of statisticalMeasurementValue as BigDecimal
- 04:07 PM Revision 7e219fcc (cdm-dataportal): cleaning up menu hook
- 04:03 PM Revision d9bcd810 (cdmlib): ref #9034 agent portal list service for agents
- 04:02 PM feature request #9034 (Closed): simple agent list page with filter function
- for providing persons to IPNI a agent page which can list person filtered by markers is needed.
Extensions of sele... - 01:56 PM Revision 9ce4dbb8 (cdm-vaadin): cleanup
- 01:56 PM Revision aed50618 (cdm-vaadin): ref #9005 try to fix unplaced in CdmQueryFactory and LeafNodeTaxonContainer
- 12:31 PM Revision c4eae296 (cdm-vaadin): ref #9005 try to fix unplaced in CdmQueryFactory
- 12:15 PM Revision 9a357016 (cdm-vaadin): cleanup
- 12:15 PM Revision 11a51de3 (cdm-vaadin): ref #9005 adapt vaadin tests to new TaxonNode.status
- 12:13 PM Revision 532ef360 (taxeditor): fix #7774: show description source in details view of description element
- 12:12 PM feature request #7774: Show description source for description elements
- please review
- 12:11 PM feature request #7774 (Resolved): Show description source for description elements
- Applied in changeset commit:taxeditor|532ef36053700bf9a053e0bc077797d5859dc0cc.
- 11:52 AM Revision d96830e8 (cdm-vaadin): ref #9005 adapt NewTaxonBasePresenter to new TaxonNodeStatus
- 11:39 AM Revision e8757a43 (cdmlib): updating cdm.map.ser to v5.15
- 11:33 AM Revision 4ac4d9de (cdm-vaadin): update vaadin test H2 to v5.15
- 11:33 AM Revision 9645d30c (taxeditor): update taxeditor test H2 to v5.15
- 11:29 AM Revision 304b49af (taxeditor): cleanup
- 11:22 AM Revision ff159e9b (cdmlib): add doubtful to TaxonNodeDtoBeanProcessor
- 11:22 AM Revision 5d3fbc0d (cdmlib): update cdmlib test H2 to v5.15
- 11:22 AM Revision 4279b3d2 (cdmlib): cleanup
- 11:22 AM Revision 284fff5f (cdmlib): ref #9005 rename TaxonNode.excludedNote -> statusNote and replace flags by status enum
- 11:22 AM Revision e922f2cf (cdmlib): ref #9027, ref #9026 update scripts for Feature.availableFor and .supportedDataTypes
- 11:22 AM Revision 611cddea (cdmlib): ref #9027 add termloading for available for and some fixes for availableFor
- 11:22 AM Revision 4f684909 (cdmlib): cleanup
- 11:22 AM Revision 44f43fdb (cdmlib): ref #8978 add integer factory method to StatisticalMeasurementValue
- 11:22 AM Revision 9e66b970 (cdmlib): cleanup
- 11:22 AM Revision a8b31160 (cdmlib): ref #7140 , ref #8802 implement supportedDataTypes and availableFor for Feature
- 11:22 AM Revision 0e662ec9 (cdmlib): fix #8978 remove NewFloat2BigDecimalInstance from ColumnTypeChanger
- 11:22 AM Revision 7bc66dc3 (cdmlib): ref #8802 fix DescriptionElementBase.clone for timeperiod
- 11:22 AM Revision 6ccc3268 (cdmlib): cleanup and minor
- 11:22 AM Revision 896e39f4 (cdmlib): ref #8802 implement TemporalData
- 11:22 AM Revision 67988f41 (cdmlib): ref #8802 fix toString for freetext in ExtendedTimePeriod
- 11:22 AM Revision 63ef266f (cdmlib): fix #8978 implement BigDecimal for StatisticalMeasurementValue - DwcaExportTest
- 11:22 AM Revision 77be8ad2 (cdmlib): ref #8802 add ExtendedTimePeriod
- 11:22 AM Revision cfb46071 (cdmlib): cleanup
- 11:22 AM Revision 83375c02 (cdmlib): fix #8978 implement BigDecimal for StatisticalMeasurementValue test schemas
- 11:22 AM Revision 2a686ccd (cdmlib): cleanup
- 11:22 AM Revision 258ee218 (cdmlib): fix #8978 implement BigDecimal for StatisticalMeasurementValue
- 11:22 AM Revision 86e5e961 (cdmlib): cleanup
- 11:22 AM Revision 43804768 (cdmlib): fix #8964 update later homonym labels and titleCaches
- 11:22 AM Revision 7a9e6f27 (cdmlib): start SchemaUpdater_5120_5150
- 11:22 AM Revision 91ce7c17 (cdmlib): cleanup
- 09:48 AM feature request #9031: Adapt CdmLightExport to new TaxonNode.status
- WGB:
um die Kompatibilität zu gewährleisten, wäre mir hier die zusätzliche Einfühurung eines bol. attributs Doubtf... - 09:03 AM Revision adefee3d (taxeditor): copy icon for character matrix to editor package
05/26/2020
- 04:56 PM Revision ad25caec (cdm-server): logging http port
- 04:47 PM Revision 212f99b8 (taxeditor): ref #8450: descriptive data set title as label for descr. dataset editor
- 04:37 PM Revision 76ad0c3c (taxeditor): ref #8450: add icon to matrix tab
- 04:26 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- Andreas Müller wrote:
> Should this be reviewed by someone?
I think this is not really needed, but having someone... - 04:11 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- Should this be reviewed by someone?
- 04:23 PM feature request #9027 (Resolved): Implement Feature.availableFor
- 04:18 PM feature request #9032 (Closed): Implement Feature.availableFor in TaxEditor
- The alternatives should be available as checkboxes in the Feature details view similar to supportsXXX.
Also the va... - 03:31 PM feature request #9022: Implement lifespan for Person Details View
- Life span of a person, or date a person has published nomenclatural novelties, e.g.
1795-1876, 1961-, -2016, fl. 20... - 02:39 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Now the buttons are removed and add and delete is moved to the context menu. If a taxon node is selected the specimen...
- 02:35 PM bug #8783 (Resolved): Massive Heap consumption in server instance opening the Description-Matrix editor
- This seems to be fixed.
- 01:13 PM feature request #9031 (Closed): Adapt CdmLightExport to new TaxonNode.status
- Currently we have boolean columns "unplaced" and "excluded". Instead we should have the 1 status column which may hav...
- 12:37 PM Revision da898043 (cdm-dataportal): ref #9010 taxon node status display: test for synonmy page
- 12:14 PM feature request #9005 (In Progress): Make the TaxonNode flags alternatives and change excluded notes to status notes
- Renamed excludedNote -> statusNote
- 11:56 AM Revision bd56cbc1 (cdm-dataportal): ref #9010 taxon node status display for taxon pages with tests
- 11:48 AM feature request #9009: Add structure to store media metadata
- as size information like width and height is already stored in MediaRepresentationPart it is not necessary to store s...
- 11:42 AM feature request #8802 (Resolved): Implement flowering period for Flora of Cyprus
- 11:40 AM task #8853 (Closed): Import Aizoaceae from Kew World Checklist to Caryo spp
- 11:40 AM feature request #9018 (Closed): Import Casearia
- 11:37 AM task #9030 (Closed): Import flowering periods for Cyprus
- 11:28 AM bug #8964 (Resolved): Improve label for homonym relationships
- Update script was added
- 11:27 AM feature request #9026 (Resolved): Implement Feature.supportedDataTypes as EnumSet
- 11:27 AM bug #8752 (Worksforme): Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset
- I could not reproduce this problem, so I close this with worksforme
- 11:07 AM Revision 6fcdf7cc (taxeditor): ref #9029: do not add specimen in long running task to avoid description duplicate - continue
- 10:23 AM bug #8753 (Closed): EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- 10:21 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- please review.
- 10:16 AM Revision dac4b16b (taxeditor): ref #9029: adapt character matrix to dtos
- 09:07 AM Revision c27c9ede (cdmlib): ref #9029: avoid description duplicates
- 09:04 AM bug #9029 (Closed): Adapt character matrix to using dtos instead of whole cdm entities
- The character matrix uses only wrappers collecting the cdm entities used for a matrix row. This should be changed to ...
05/25/2020
- 03:50 PM Revision 02d289c7 (taxeditor): ref #7189 improving & cleaning up size calculation of login dialog - cleaning up
- 02:42 PM Revision 91736608 (taxeditor): ref #7189 improving & cleaning up size calculation of login dialog
- 01:35 PM Revision da48381e (cdmlib): updating surefire plugin an attempt to make build full utf-8
- 08:58 AM bug #9028 (New): Endless loop when opening the context menu of name facts
- Hallo,
beim Versuch, ein Name Fact einzugeben, nach der Inserierung des Factual Data Sets, beim Aufruf des Kontextme...
05/24/2020
- 04:37 PM feature request #9027 (Closed): Implement Feature.availableFor
- This should be implemented as EnumSet. It allows to distinguish if a Feature is available for Taxon, TaxonName and/or...
- 04:32 PM feature request #9026 (Closed): Implement Feature.supportedDataTypes as EnumSet
- 04:05 PM Revision 86d88e9a (cdmlib): ref #9014 parse "bis" in test (not final version yet) for ", n.s.,"
- 03:57 PM Revision b831705b (cdmlib): cleanup
- 03:55 PM Revision 50e1dca1 (cdmlib): ref #9014, ref #8996 parse Russian series
- 03:55 PM Revision 90170ac3 (cdmlib): cleanup
- 03:55 PM Revision 668d3638 (cdmlib): cleanup
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