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From 05/19/2020 to 06/17/2020

06/17/2020

07:12 PM feature request #8181: Further features for bulk editors
Andreas Kohlbecker wrote:
> Just a thought on additinal filter options for bulkeditors in general:
>
> the servic...
Andreas Müller
07:09 PM feature request #8181: Further features for bulk editors
ref type already exists so I kind of remove it from the above list.
As "created by" should be easy to implement so...
Andreas Müller
06:57 PM feature request #8181: Further features for bulk editors
Just a thought on additinal filter options for bulkeditors in general:
the service method `IdentifiableDaoBase.fin...
Andreas Kohlbecker
07:09 PM feature request #9022 (Closed): Implement lifespan for Person Details View
works as expected, ticket can be closed Andreas Kohlbecker
07:08 PM bug #9056: Entering a year in timeperiod element recalculates the dimension of the textfields in strange way
I can't reproduce this on KDE Neon 5.19.0 Andreas Kohlbecker
05:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix
"Das Label im Kontextmenü "Add Specimen Descriptions" ist zwar inhaltlich richtig aber "Add Specimens" wäre intuitive... Andreas Kohlbecker
05:36 PM bug #9013 (Closed): Problems in TaxonNode Dialog
I can no longer reproduce these errors - closing this as fixed. Andreas Kohlbecker
05:29 PM bug #8849: NPE in synonym DetailsViewer for synonyms without accepted taxon
Good points.
I suggest to split the ticket. The NPE is fixed so this ticket can be closed.
The improved handling ...
Andreas Müller
04:42 PM bug #8849 (Feedback): NPE in synonym DetailsViewer for synonyms without accepted taxon
Generally for permission checks the class `CdmUserHelper` should be used which provides a couple of methods like `use... Andreas Kohlbecker
05:25 PM bug #8816 (Worksforme): NoSuchElementException during adding Specimens to Matrix Editor
also can't reproduce this issue Andreas Kohlbecker
01:55 PM feature request #9025 (Closed): allow for creating a new schema in empty dbs via the remote login dialog
Andreas Müller
12:56 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
> The "Create Schema" must not be triggered by hitting the enter key in the password or username fields
Is also fi...
Andreas Kohlbecker
12:45 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
The color issue is fixed, now. Please can someone check the look on windows? Andreas Kohlbecker
12:37 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The Points 1 - 4 from above are fixed.
> >
> > Two remaini...
Andreas Kohlbecker
12:35 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
Andreas Kohlbecker wrote:
> The Points 1 - 4 from above are fixed.
>
> Two remaining issues:
>
> * The connect...
Andreas Müller
12:25 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
The Points 1 - 4 from above are fixed.
Two remaining issues:
* The connect button however looks a bit strange b...
Andreas Kohlbecker
08:43 AM bug #8901 (Resolved): Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
Andreas Müller wrote:
> Andreas Müller wrote:
> > Is this fixed and should be reviewed?
>
> ??
sorry, yes.
Katja Luther
01:16 AM feature request #9078 (Closed): Handle name parsing and deduplication on server side
this is blocking #8857
requires:
* improvement of match strategies for parsed names (MatchStrategyFactory): #9...
Andreas Müller

06/16/2020

09:06 PM bug #8901: Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
Andreas Müller wrote:
> Is this fixed and should be reviewed?
??
Andreas Müller
07:43 PM bug #9077 (New): Handle "Show details" in context menu of name editor differently
Currently the context menu's last entry is "Show details". This does not make sense as we also have the "Open in ..."... Andreas Müller
07:28 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Andreas Müller wrote:
> The problem still exists if you directly click on the moved synonym. If you click on another...
Andreas Müller
07:25 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Andreas K., can you also check if you can reproduce this? Andreas Müller
07:24 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
What I did in rem_conf_am:
* Open taxon "Test" in classification "Testklass"
* Move heterotypic synonym Hetero sy...
Andreas Müller
07:15 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Strange, the problem still exists for me:
![](picture836-1.png)
Andreas Müller
11:52 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Katja Luther wrote:
> I tried an hour ago, but the test server was not available.
I can't reproduce it with the n...
Katja Luther
11:38 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Now the test server is up again. Can you please try again? Andreas Müller
11:16 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
I tried an hour ago, but the test server was not available. Katja Luther
11:14 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Did you try again? If not please pass the ticket back to me and I will try again. Andreas Müller
06:22 PM bug #9024 (New): repeated startups of the managed server eats up harddisk space
In windows it is configurable but by default automatic cleaning of the temp file is switched off. If switched on it c... Andreas Müller
05:36 PM bug #9076 (Closed): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
the test portal looks ok now Andreas Kohlbecker
05:31 PM bug #9076 (Resolved): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
Applied in changeset commit:cdm-dataportal|aec9ca7defa215bd9d28320a526751741baac1ce. Andreas Kohlbecker
05:30 PM bug #9076 (In Progress): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
Andreas Kohlbecker
05:30 PM bug #9076 (Closed): synonymy without margin when 'Synonymy as tab' and 'Tabbed taxon page' are off
When the setting for 'Synonymy as tab' and 'Tabbed taxon page' (config/cdm_dataportal/settings/layout/taxon) are off ... Andreas Kohlbecker
04:56 PM feature request #9034: simple agent list page with filter function
[Henning wrote]
Gefällt mir sehr gut!!
Vielen Dank und viele Grüße,
Henning
Andreas Kohlbecker
04:21 PM feature request #9034 (Resolved): simple agent list page with filter function
Done! Ich fand es übersichtlicher und ruhiger nach den Namensdetails eine Zeilenschaltung einzuschieben. Andreas Kohlbecker
04:14 PM feature request #9034: simple agent list page with filter function
Hallo Andreas,

vielen Dank für Deine Mail und Deinen Vorschlag. Einerseits finde ich Deinen Vorschlag gut wei...
Andreas Kohlbecker
03:55 PM bug #8785: Move functionality of buttons to context menu of the character matrix
... however, the value was stored in the DB, so maybe the error occurred during save for AUD data. Andreas Müller
03:51 PM bug #8785: Move functionality of buttons to context menu of the character matrix
When changing a value (1 out of 3 exact values) I got an exception during save:
~~~
last remote method : http://t...
Andreas Müller
03:29 PM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
Generally this works.
There is 1 open issue which is a bit critical: it is only possible to a specimen for a taxon...
Andreas Müller
03:50 PM bug #9075 (New): Exact values in descriptive matrix label provider should be ordered
Currently they appear in non-deterministic order.
I think the best appropriate order is to order them by value, st...
Andreas Müller
03:35 PM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
The new field seems not to be used for entering values in the dialogs for the descriptive matrix. But this is the mai... Andreas Müller
09:44 AM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
looks good. Katja Luther
02:55 PM bug #9016 (Closed): Adding specimen without field unit fails
This works.
A related ticket that the protected titleCache of an orphaned derived unit is handled in #9074
Andreas Müller
02:53 PM bug #9074 (New): Specimen missing a collector + n° and missing a collection identifier (Barcode, Accession number) not identifiable in descriptive Matrix
e.g. linking a Specimen without fieldunit which has only information in the DerivedUnit.titleCache shows "no informat... Andreas Müller
02:48 PM bug #9073 (Worksforme): Configuring the matrix view throws HTTP invoker exception
I tried to open the view configuration for the descriptive matrix
![](picture700-1.png)
and got the following e...
Andreas Müller
02:14 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
I don't exactly remember the situation out of which I wrote this tickt, but from my current point of view the solutio... Andreas Kohlbecker
11:17 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> Andreas Müller wrote:
> > Generally I have problems to understand this ticket.
> >
> > D...
Katja Luther
11:16 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
Andreas Müller wrote:
> Generally I have problems to understand this ticket.
>
> Do I understand it correctly tha...
Andreas Müller
01:45 PM feature request #7820 (Rejected): Add cron job for deleting cdmserver log files after a specified time period
no longer needed as we are using the RollingFileAppender of lockback which deletes logs older than 30 days or if the ... Andreas Kohlbecker
01:42 PM feature request #7821 (Duplicate): Use log4j2 for cdmserver logging to avoid having a separate cron job for deleting log files
closing as duplicate of #7085 Andreas Kohlbecker
01:41 PM bug #7085 (Closed): cdmserver logfiles getting too big, use RollingFileAppender
implemented and tested locally, on edit-test and edit-int. Andreas Kohlbecker
01:39 PM bug #8682: cdm-server debian packages configured for jemalloc
can be closed if
1. there are no problems on the test or int server
2. all `LD_PRELOAD=/usr/lib/x86_64-linux-gnu/...
Andreas Kohlbecker
11:53 AM bug #8682: cdm-server debian packages configured for jemalloc
mainly solved!
Remaining task: adapt cdm-server documentation
After the release all `LD_PRELOAD=/usr/lib/x86_64...
Andreas Kohlbecker
11:50 AM bug #8682 (Resolved): cdm-server debian packages configured for jemalloc
Applied in changeset commit:cdm-server|bc3050782e9cc090105f1ea63d005d471c8c48f1. Andreas Kohlbecker
01:37 PM feature request #3683: add /etc/default/cdmserver to debian package
done. Ticket can be closed when there are no problems on the test and int server. Andreas Kohlbecker
01:36 PM feature request #3683 (Resolved): add /etc/default/cdmserver to debian package
Applied in changeset commit:cdm-server|2fb99eb9e93faf8769f8ea22cadb12caea3c30b1. Andreas Kohlbecker
11:35 AM bug #7189: Taxeditor connect dialog high-dpi suport
I tested with 100%, 125%, 150% and 175% on a windows machine Andreas Müller
11:34 AM bug #7189 (Closed): Taxeditor connect dialog high-dpi suport
This is generally fixed. Only issue is that the recalculation of the layout sometimes stocks in the middle while data... Andreas Müller
11:30 AM feature request #9072 (New): Layout issues temporal data details view
from #8990:
Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead having a ...
Katja Luther
11:29 AM feature request #8990 (Closed): Implement flowering periods (temporal facts) in TaxEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > There was still an NPE in the DescriptionHelper. I tried to fix t...
Katja Luther
11:22 AM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
Andreas Müller wrote:
> Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead...
Andreas Müller
11:21 AM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
An improved formatter is handled in #9071 Andreas Müller
11:18 AM feature request #8990 (Feedback): Implement flowering periods (temporal facts) in TaxEditor
Andreas Müller wrote:
> There was still an NPE in the DescriptionHelper. I tried to fix this in f266536e
This wor...
Andreas Müller
11:20 AM feature request #9071 (Closed): Implement formatter for TimePeriod, VerbatimTimePeriod and ExtendedTimePeriod
copied from #8990 Andreas Müller
11:06 AM feature request #9032 (Feedback): Implement Feature.availableFor in TaxEditor
Looks much better now.
I just wonder if it is not maybe better to handle Supports and Available for also as Sectio...
Andreas Müller
09:37 AM feature request #9032: Implement Feature.availableFor in TaxEditor
the layout issues are solved. Katja Luther
09:35 AM feature request #9032 (Resolved): Implement Feature.availableFor in TaxEditor
Applied in changeset commit:taxeditor|45f8176560c646e39fb6244aa33a38160a4adea9. Katja Luther

06/15/2020

10:05 PM feature request #9032: Implement Feature.availableFor in TaxEditor
Minor note: can we move Categorical Data up just below Supports Text Data? This is because features for Categorical D... Andreas Müller
10:03 PM feature request #9032: Implement Feature.availableFor in TaxEditor
A minor issue for the layout of the term details view
We should maybe better distinguish the supportsXXX and avail...
Andreas Müller
09:55 PM feature request #9032 (Feedback): Implement Feature.availableFor in TaxEditor
Andreas Müller
09:55 PM feature request #9032: Implement Feature.availableFor in TaxEditor
Generally it seems to work.
One issue I found:
* I changed "Orthography to be available for Taxon, not Taxon na...
Andreas Müller
06:02 PM feature request #9032: Implement Feature.availableFor in TaxEditor
Katja Luther wrote:
> No, I just found a problem.
the problem is fixed, please review.
Katja Luther
06:01 PM feature request #9032 (Resolved): Implement Feature.availableFor in TaxEditor
Katja Luther
12:48 PM feature request #9032: Implement Feature.availableFor in TaxEditor
No, I just found a problem. Katja Luther
12:12 PM feature request #9032: Implement Feature.availableFor in TaxEditor
Is this ticket for review then? Andreas Müller
11:02 AM feature request #9032: Implement Feature.availableFor in TaxEditor
Katja Luther wrote:
> the details view and the featureTree creation is implemented, but the preference page needs to...
Katja Luther
09:42 PM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
Maybe we can still improve the layout by not redundantly using "Month" and "Day" but instead having a theses labels a... Andreas Müller
09:35 PM feature request #8990: Implement flowering periods (temporal facts) in TaxEditor
There was still an NPE in the DescriptionHelper. I tried to fix this in f266536e Andreas Müller
10:58 AM feature request #8990 (Resolved): Implement flowering periods (temporal facts) in TaxEditor
a first implementation is available, please review. Katja Luther
09:10 PM feature request #9066 (Closed): Make visiblity of Specimen List Editor menu configurable
Works as expected Andreas Müller
06:05 PM feature request #9066 (Resolved): Make visiblity of Specimen List Editor menu configurable
Applied in changeset commit:cdmlib|c3c33fc8596c94035a7d944b6d3dd70b982ea20a. Katja Luther
09:07 PM feature request #8958 (Closed): Add publication year, inReference (journal), and URI to reference bulk editor
now everything looks fine Andreas Müller
07:56 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
Katja Luther
07:56 PM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
Andreas Müller wrote:
> Great, this is looks (IMO).
>
> There is only a minor open issue: if subreference has no ...
Katja Luther
07:56 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
Applied in changeset commit:taxeditor|7cff439d088ab830363cff21695e0c8b7305d494. Katja Luther
09:04 PM feature request #9033 (Closed): Adapt TaxEditor to new TaxonNode.status
Works as expected Andreas Müller
07:50 PM feature request #9033: Adapt TaxEditor to new TaxonNode.status
Andreas Müller wrote:
> Now I got an NPE when switching from status to no status
>
the NPE is fixed, please review.
Katja Luther
07:50 PM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
Applied in changeset commit:taxeditor|eb5c6646d625eb63d4031b226ae2cd99fa7dda48. Katja Luther
08:57 PM feature request #9009: Add structure to store media metadata
Please review Andreas Müller
08:54 PM bug #9059 (Closed): Cancel taxon save does not clean the (factual data) cache
Seems to work now Andreas Müller
06:06 PM bug #9059 (Resolved): Cancel taxon save does not clean the (factual data) cache
Andreas Müller wrote:
> I got an NPE when testing this ticket together with #9038
>
the NPE is fixed.
Katja Luther
08:40 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Can you please review my changes and if ok close the ticket? Andreas Müller
08:39 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
I did some further adaptations. Some were incorrect but now I think it should work as expected (max pre-decimal numbe... Andreas Müller
07:41 PM feature request #8128 (Duplicate): Add indicator for feature facts and/or vocabularies which description type they support
This ticket duplicates #9027 Andreas Müller
07:27 PM feature request #9040 (New): Implement open button for ORCIDs
Katja Luther
05:57 PM feature request #9040 (Resolved): Implement open button for ORCIDs
Katja Luther
06:01 PM bug #9070 (Resolved): Adapt preference page to feature.isAvailableFor...
this is fixed, please review. Katja Luther
11:01 AM bug #9070 (Closed): Adapt preference page to feature.isAvailableFor...
The preference pages for facts base on vocabularies but should base on the flags isAvailableForTaxon/-TaxonName/-Occu... Katja Luther
04:04 PM feature request #9067: [DISCUSS] Allow media to support external links not being files
WGB:
als Diskussionsbeitrag der Hinweis, dass wir in der Darstellung im Portal grundsätzlich die Unterscheidung ei...
Andreas Müller
09:02 AM feature request #9067: [DISCUSS] Allow media to support external links not being files
I actually see no benefit of the "solutions" 2 - 4 over 1.
Adding additional fields for external links is nothing ...
Andreas Kohlbecker
12:09 PM bug #5601: Creation of local database structure via remoting
Don't know if this is a better title. The database is not necessarily a **local** one. It only needs to be reachable,... Andreas Müller
10:22 AM bug #5601 (Duplicate): Creation of local database structure via remoting
So I close this ticket as duplicate. If you have an idea for a better ticket title feel free to change it. Andreas Müller
10:02 AM bug #5601: Creation of local database structure via remoting
Andreas Müller wrote:
> As the description says "can be created automatically in the same way **as it was possible i...
Andreas Kohlbecker
11:43 AM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
I forgot to mention that also the TaxonNode source should be shown here Andreas Müller
09:31 AM feature request #9010 (In Progress): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
thank you for pointing this out. I overlooked the additional requirement to show also status notes. Andreas Kohlbecker
09:11 AM bug #9024: repeated startups of the managed server eats up harddisk space
in linux systems the tmp folder is cleared during the system start up, which is a very wise strategy. In Mac OS is is... Andreas Kohlbecker

06/13/2020

11:40 AM feature request #9004: Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
Open orphanRemoval issue moved to #9069 Andreas Müller
11:35 AM feature request #9004: Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
Rename the ticket as the primary change was the change to use OriginalSource (test implementation for #6581) Andreas Müller
11:38 AM bug #9069 (New): Remove orphan single sources
In some classes only a single source is referenced (e.g. classes implementing SingleSourcedEntityBase or TaxonName.no... Andreas Müller
01:08 AM bug #9024 (Feedback): repeated startups of the managed server eats up harddisk space
is it really critical if data is extracted into the tmp folder? Older data in this folder should be automatically del... Andreas Müller

06/12/2020

10:42 PM feature request #8990 (In Progress): Implement flowering periods (temporal facts) in TaxEditor
Katja Luther
08:23 PM feature request #9004 (Resolved): Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
Applied in changeset commit:cdmlib|1f1f7ea103177a09f739fe1808def0261f1ea424. Andreas Müller
05:18 PM bug #9059 (Feedback): Cancel taxon save does not clean the (factual data) cache
Andreas Müller
05:18 PM bug #9059: Cancel taxon save does not clean the (factual data) cache
I got an NPE when testing this ticket together with #9038
~~~
last remote method : http://localhost:50405/remotin...
Andreas Müller
05:15 PM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Numbers with >9 digits before the decimal sign are still allowed. I adapted the regex accordingly.
Also incorrect ...
Andreas Müller
04:38 PM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
Great, this is looks (IMO).
There is only a minor open issue: if subreference has no date data and the inreference...
Andreas Müller
03:38 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
now, the string representation is added if the year differs from the string representation of the publication date. Katja Luther
03:36 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
Applied in changeset commit:taxeditor|20c5d67db28aeffddf4445a67d74c7e9d1aea10c. Katja Luther
04:24 PM bug #9063 (Closed): Detailsview for MediaSpecimen broken
works as expected Andreas Müller
04:22 PM feature request #9068 (New): Parser for ExtendedTimePeriods
e.g. for phenology data like (Apr)-May-July-(Aug) or (4)-5-7-(8) Andreas Müller
04:08 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
Now I got an NPE when switching from status to no status
~~~
last remote method : http://localhost:49511/remoting...
Andreas Müller
04:03 PM feature request #9066 (Feedback): Make visiblity of Specimen List Editor menu configurable
This works as expected. Only I think the default value should maybe be "enabled". This is more according to our defau... Andreas Müller
12:31 PM feature request #9066: Make visiblity of Specimen List Editor menu configurable
this should be fixed. please review. Katja Luther
12:29 PM feature request #9066 (Resolved): Make visiblity of Specimen List Editor menu configurable
Applied in changeset commit:taxeditor|a0257f6e93d6a598489c23c4d84868253e4cb82e. Katja Luther
11:21 AM feature request #9066 (Closed): Make visiblity of Specimen List Editor menu configurable
As we do have the Specimen Tree Editor now the Specimen List Editor is not really needed anymore. Therefore it may ma... Andreas Müller
03:52 PM bug #9060 (Closed): NPE in termsearch
works as expected Andreas Müller
03:41 PM feature request #9064 (Resolved): Add ExternalLinks to IdentifiableEntities
Andreas Müller
01:03 AM feature request #9064 (Closed): Add ExternalLinks to IdentifiableEntities
Andreas Müller
02:10 PM feature request #9067 (In Progress): [DISCUSS] Allow media to support external links not being files
Andreas Müller
02:10 PM feature request #9067: [DISCUSS] Allow media to support external links not being files
I preliminary added an attribute link (ExternalLink) to Media class to be able to immediately support solutions 3 or ... Andreas Müller
01:57 PM feature request #9067 (Closed): [DISCUSS] Allow media to support external links not being files
The current handling of media expects that links stored in Media(RepresentationPart) are media files or can be opened... Andreas Müller
01:16 PM feature request #9031 (Closed): Adapt CdmLightExport to new TaxonNode.status
checked the cdmlight result and the doubtful flag is correctly set. Katja Luther
12:41 PM feature request #9031 (Resolved): Adapt CdmLightExport to new TaxonNode.status
Katja Luther
12:40 PM feature request #9031 (New): Adapt CdmLightExport to new TaxonNode.status
Andreas Müller wrote:
> WGB:
>
> um die Kompatibilität zu gewährleisten, wäre mir hier die zusätzliche Einfühurun...
Katja Luther
12:40 PM feature request #9031 (Resolved): Adapt CdmLightExport to new TaxonNode.status
Applied in changeset commit:cdmlib|38adedb9c022a407c44338aa1798051015b46321. Katja Luther
11:18 AM feature request #9065 (Closed): Add derived unit media to DerivedUnitFacade details view
For the workflow of adding typification or any other specimen data to a taxon/name it is often necessary to add also ... Andreas Müller
09:21 AM feature request #9032 (In Progress): Implement Feature.availableFor in TaxEditor
the details view and the featureTree creation is implemented, but the preference page needs to be adapted, because th... Katja Luther
08:58 AM bug #9016: Adding specimen without field unit fails
Andreas Müller wrote:
> so I guess we can put it to resolved?
yes, please review
Katja Luther
08:43 AM bug #9016 (Resolved): Adding specimen without field unit fails
so I guess we can put it to resolved? Andreas Müller
08:47 AM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
On the above test page I could not find any example with status **notes**. Is this implemented already? If yes, is th... Andreas Müller

06/11/2020

11:02 PM bug #9016: Adding specimen without field unit fails
This is fixed. For example for Aporocactus flagelliformis (L.) Lem. in caryophyllales_spp there are two specimen with... Katja Luther
05:10 PM bug #5601: Creation of local database structure via remoting
As the description says "can be created automatically in the same way **as it was possible in standalone**" .
And " ...
Andreas Müller
05:02 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
difficult to say. Maybe we can put the result of toString in brackets behind the year, if and only if the result diff... Andreas Müller
12:34 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
so I would keep it like it is? Katja Luther
12:33 PM bug #8806 (Worksforme): Multiple representations problem on saving Desriptive Data Set
this seems to be fixed with one of the other fixes in character matrix and descriptive dataset editor Katja Luther
12:29 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> Is this ticket ready for review or are there open issues (beside the known PK-Generation iss...
Katja Luther
12:27 PM bug #9029 (Closed): Adapt character matrix to using dtos instead of whole cdm entities
this is fixed. Katja Luther
12:04 PM bug #9063: Detailsview for MediaSpecimen broken
please review. Katja Luther
12:00 PM bug #9063 (Resolved): Detailsview for MediaSpecimen broken
Applied in changeset commit:taxeditor|c198e9650016b7456fc0d12d3cdda3f1526cb7c0. Katja Luther
11:59 AM bug #9063 (Closed): Detailsview for MediaSpecimen broken
The detailsview for MediaSpecimen are broken. Katja Luther
12:03 PM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
now the notes are removed, but remembered till the wizard is closed and the taxon node saved. please review. Katja Luther

06/10/2020

05:38 PM feature request #9009 (Resolved): Add structure to store media metadata
Applied in changeset commit:cdmlib|72032e8369286b8e52207a4ed1ed0443e416b72a. Andreas Müller
02:57 PM feature request #9009 (In Progress): Add structure to store media metadata
Andreas Müller
04:46 PM task #9062 (Closed): Remove StatisticalMeasurementValue.value_old
To finalize #8978 Andreas Müller
01:49 PM task #9037 (Resolved): Remove old Feature.supportedXXX columns
Andreas Müller
01:49 PM task #9036 (Resolved): Remove old TaxonNode.unplaced/doubtful/excluded columns
Andreas Müller
01:15 PM bug #9061 (New): Create analyze framework for CDM Excel imports
This framework should allow to analyze import data before running the import.
This should include
* analyzeWork...
Andreas Müller
12:54 PM bug #5710 (Feedback): Changing the database connection must reset all caches
This is not yet fixed as we watched in the past multiple times that switching between instances created serious probl... Andreas Müller
12:02 PM feature request #9038 (Resolved): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
now the entered text is checked by a regular expression, please review. Katja Luther
01:35 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Please be aware of #9059 when testing this Andreas Müller
01:20 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Another open issue:
if the scale or the precision is not according to the possible precisions/scales the data is n...
Andreas Müller
01:07 AM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Katja Luther wrote:
> now the incorrect state is not cleared, but the value is not stored. I had a look how it is ha...
Andreas Müller
11:59 AM bug #9060: NPE in termsearch
this should be fixed, please review Katja Luther
11:58 AM bug #9060 (Resolved): NPE in termsearch
Applied in changeset commit:taxeditor|74c3df2a4568e1e35a994b99443381d24b32f0ea. Katja Luther
11:56 AM bug #9060 (Closed): NPE in termsearch
In term search throws NPE:
~~~ text
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/rem...
Katja Luther
10:17 AM task #6021 (Rejected): Add 'mention' functionality
Andreas Kohlbecker
09:56 AM task #6008: Fix broken UTF-8 characters
This is still an open issue and should be fixed Andreas Kohlbecker
09:55 AM bug #6007 (Worksforme): Redmine: Wiki tables are not correctly mapped to new syntax
many tables have been fixed manually, so there is no more need for general action on this topic.
The above linked...
Andreas Kohlbecker
09:40 AM bug #5601 (Feedback): Creation of local database structure via remoting
Andreas Müller wrote:
> This is probably fixed with #9025 . Still need to test if it really works with H2.
So thi...
Andreas Kohlbecker
12:40 AM bug #5601: Creation of local database structure via remoting
This is probably fixed with #9025 . Still need to test if it really works with H2. Andreas Müller
09:29 AM bug #9059: Cancel taxon save does not clean the (factual data) cache
this should be fixed, please review. Katja Luther
09:28 AM bug #9059 (Resolved): Cancel taxon save does not clean the (factual data) cache
Applied in changeset commit:taxeditor|be22ce7df518ffa44a2ac886d8b4f84fd4497227. Katja Luther
01:34 AM bug #9059 (Closed): Cancel taxon save does not clean the (factual data) cache
What I did:
* open a taxon in name editor
* change an existing fact
* close name editor without saving
* reopen...
Andreas Müller
08:37 AM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
mail WB:
Hello,
my use cases for display of the publication year right now are
(i) the selection of nom. referen...
Katja Luther
01:44 AM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
Generally this works now. I only wonder if it is really wanted to only show the year. In case of a freetext date noth... Andreas Müller
01:38 AM bug #8903 (Closed): Remember expansion state in factual data view
works now Andreas Müller

06/09/2020

11:54 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
Now existing notes are not deleted if the status is set to null. This is the typical problem that you may not want to... Andreas Müller
10:15 AM feature request #9033 (Resolved): Adapt TaxEditor to new TaxonNode.status
Andreas Müller wrote:
> This is mostly fixed. 2 remaining issues:
>
> * rename label "status" to "placement stat...
Katja Luther
11:35 PM bug #9058 (Resolved): Hibernate loggs error when creating schema on MySQL due to failing index creation
Andreas Müller
04:20 PM bug #9058: Hibernate loggs error when creating schema on MySQL due to failing index creation
Some further links:
* https://stackoverflow.com/questions/46156953/how-to-resolve-specified-key-was-too-long-max-...
Andreas Müller
03:59 PM bug #9058 (In Progress): Hibernate loggs error when creating schema on MySQL due to failing index creation
Strange is that on some systems this is only logged as warning while others do throw an exception. I did not yet find... Andreas Müller
11:34 AM bug #9058 (Closed): Hibernate loggs error when creating schema on MySQL due to failing index creation
Errors are like:
~~~
ERROR [main][or.hi.to.hb.SchemaExport:484] - HHH000389: Unsuccessful: create index agentTitl...
Andreas Müller
10:38 PM feature request #8464: Make AuthorityBases unique
In #9058 a very similar problem was solved. For doing the same thing for this index (which is a unique index not a si... Andreas Müller
10:24 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
Yes, the refactoring was not fully ready. Can you please try again if the above problems still appear? Andreas Müller
05:10 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
another problem:
4) Taxeditor SNAPSHOT version: Open connect dialog, The dialog initially tries to connect the **d...
Andreas Kohlbecker
03:55 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
reviewing your changes I found the following issues:
1) In case of an empty DB the following notification is shown...
Andreas Kohlbecker
06:21 PM bug #4300 (Worksforme): Authority form does not work under Windows
Operation Checkboxes in the Authority Form do now work in windows 10.
I have no idea how and when this was fixed, ...
Andreas Kohlbecker
06:02 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
from the diagrams it really looks like this problem is fixed. Can you please link the `rowWrappers`-Ticket with this ... Andreas Kohlbecker
05:55 PM bug #9020 (Closed): add default role Allow_for_all_taxa (TAXONNODE.[CREATE,READ,UPDATE,DELETE])
The new PermissionGroup has been created in all old databases on edit-int, so this issue is fully solved. Andreas Kohlbecker
04:56 PM bug #7189 (Resolved): Taxeditor connect dialog high-dpi suport
I consider this as fixed, please review. Andreas Kohlbecker
03:24 PM bug #7189: Taxeditor connect dialog high-dpi suport
I think we just should remove all this programmatic setting of font sizes as they are centrally managed via the setti... Andreas Kohlbecker
03:16 PM bug #7189: Taxeditor connect dialog high-dpi suport
Im code ist mir aufgefallen dass Cherian die Ubuntu Fontfamilie verwendet. ich nehme an um die Schriftgröße setzen zu... Andreas Kohlbecker
11:14 AM bug #7189: Taxeditor connect dialog high-dpi suport
Andreas Kohlbecker wrote:
> this issue is mainly fixed. Only the width of the comboboxes is a bit too wide.
>
> *...
Katja Luther
04:12 PM bug #8662 (Closed): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
Andreas Müller wrote:
> If the tree list is empty it works now as expected.
>
> >Auch wenn Taxa existieren, wird ...
Katja Luther
03:02 PM feature request #9023 (Closed): option to start cdm webapp with hibernate.hbm2ddl.auto = create
this works now as expected Andreas Kohlbecker
03:00 PM bug #8994 (Closed): universal image viewer fails loading libs when clean urls is disabled
tested on the test server and no problems found. Andreas Kohlbecker
02:55 PM feature request #9034: simple agent list page with filter function
Suggestion for a more compact layout:
~~~
Li, Y. [Yang Li] , fl. 2018 (Family name: Li, Given name: Yang) https:/...
Andreas Kohlbecker
02:34 PM feature request #9010 (Closed): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
All suggested improvements are now implemented.
I've chosen to keep the label and to replace "Classificatorical stat...
Andreas Kohlbecker
02:02 PM feature request #9038 (Resolved): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Changed from DefaultQuantitativeDescriptionBuilder to QuantitativeDataFormatter to create the label string. If the ha... Katja Luther
01:56 PM feature request #6878 (Resolved): choose a base font for the portal and deliver it from the drupal module or theme
* Umstellen des zen_dataportal themes auf Noto Sans - DONE
* Installation der dazu passenden Noto Mono - DONE
* En...
Andreas Kohlbecker
11:20 AM bug #8903 (Resolved): Remember expansion state in factual data view
this should be fixed now. Katja Luther
11:19 AM bug #8954 (Closed): Details and Supplemental Data View do not save the expansion state of sections again
OK, I moved the factual data issue to a new ticket #9057 Andreas Müller
10:34 AM bug #8954: Details and Supplemental Data View do not save the expansion state of sections again
Andreas Müller wrote:
> For the supplemental data view and the details view the behavior seems to be fixed.
>
> D...
Katja Luther
11:17 AM feature request #9057 (New): Remember expansion state in factual data view when changing focus
The details view and the supplemental data view remember their expansion state when the focus changes. This is not ye... Andreas Müller
11:12 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Is this ticket ready for review or are there open issues (beside the known PK-Generation issues which we should move ... Andreas Müller
10:56 AM bug #8785: Move functionality of buttons to context menu of the character matrix
the key generation is also moved to the context menu and the buttons are removed now. The funtionality of key generat... Katja Luther
10:25 AM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
Applied in changeset commit:taxeditor|93bca431d69ab3aab0080702d425bc1523cbf0f1. Katja Luther
09:03 AM bug #9047 (Closed): Search does not return orphaned synonyms
Katja Luther
02:19 AM feature request #7432 (In Progress): Show default login only if the account has not been changed
Implemented now that default login is shown only for localhost mgd. (v 5.15) Andreas Müller

06/08/2020

04:17 PM feature request #9010 (In Progress): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
Andreas Müller wrote:
> On the taxon page in the tabbed version I would move the text above the tabs (immediately be...
Andreas Kohlbecker
03:37 PM feature request #9022 (Resolved): Implement lifespan for Person Details View
Katja Luther
03:35 PM feature request #9022 (In Progress): Implement lifespan for Person Details View
The lifespan is added to the details view of persons, this is fixed, but there is a general problem with the time per... Katja Luther
03:34 PM bug #9056 (New): Entering a year in timeperiod element recalculates the dimension of the textfields in strange way
see #9022#note-3 Katja Luther
02:22 PM bug #8857 (Feedback): NonUniqueObjectException when creating new taxon
Andreas Müller
01:57 PM feature request #9038 (Feedback): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
Katja Luther wrote:
> The label issue is caused by the DefaultQuantitativeDescriptionBuilder because exact values ar...
Andreas Müller
11:28 AM feature request #9038: Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
now the incorrect state is not cleared, but the value is not stored. I had a look how it is handled for urls and the ... Katja Luther
10:20 AM feature request #9038 (In Progress): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
The label issue is caused by the DefaultQuantitativeDescriptionBuilder because exact values are not handled. Katja Luther
01:56 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
I can't reproduce it when starting from workspce, I will try it again with nightly build. Katja Luther
10:47 AM bug #8959 (Feedback): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
Andreas Müller
01:49 PM bug #9047: Search does not return orphaned synonyms
Katja Luther wrote:
> ah, you are right, but then I think it should be "LEFT JOIN s.acceptedTaxon as t".
no the t...
Andreas Müller
01:45 PM bug #9047: Search does not return orphaned synonyms
Andreas Müller wrote:
> Katja Luther wrote:
> > I think the left join is not necessary because only the id of the s...
Katja Luther
11:29 AM bug #9047 (Resolved): Search does not return orphaned synonyms
Katja Luther wrote:
> I think the left join is not necessary because only the id of the synonyms/taxa are collected ...
Andreas Müller
09:55 AM bug #9047 (Feedback): Search does not return orphaned synonyms
I think the left join is not necessary because only the id of the synonyms/taxa are collected in the sql query, but t... Katja Luther
09:51 AM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
I am currently reviewing this issue (and implementing some further improvements) Andreas Müller
09:43 AM bug #9052 (Closed): NPE in name details view for incomplete name relationships
works. Katja Luther

06/05/2020

10:40 AM bug #9055 (Closed): Relabel "Type Designation" to "Type Information"
looks fine. Katja Luther

06/04/2020

05:12 PM bug #9055: Relabel "Type Designation" to "Type Information"
I fixed this. Please review. Andreas Müller
05:05 PM bug #9055 (Resolved): Relabel "Type Designation" to "Type Information"
Applied in changeset commit:taxeditor|8886565aa01ea7b0a0d2577a199e3cce70554023. Andreas Müller
12:32 PM bug #9055 (Feedback): Relabel "Type Designation" to "Type Information"
in Name Details View.
This is because textuell type designations are usually no desingations but only information ...
Andreas Müller
04:53 PM bug #9053 (Closed): CCE when selecting Character Tree for descriptive dataset
Fixed Andreas Müller
09:39 AM bug #9053: CCE when selecting Character Tree for descriptive dataset
please review Katja Luther
09:37 AM bug #9053 (Resolved): CCE when selecting Character Tree for descriptive dataset
Applied in changeset commit:cdmlib|e0e63b180e28c4bcd085c31ac6055d117aea00de. Katja Luther
08:57 AM bug #9053: CCE when selecting Character Tree for descriptive dataset
The same problem occurs when selecting a character tree in the Character Editor. Andreas Müller
08:48 AM bug #9053 (Closed): CCE when selecting Character Tree for descriptive dataset
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/termtree.service
last remote r...
Andreas Müller
11:40 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> Andreas Müller wrote:
> > An important open issue is that it is currently not possible to add...
Andreas Müller
09:54 AM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
Katja Luther
09:41 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Andreas Müller wrote:
> An important open issue is that it is currently not possible to add a "literature"- or a "de...
Katja Luther
09:25 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Also the buttons "Aggregation" and "Generate Polytomous Key" should be handled in the menu, not as separate buttons. ... Andreas Müller
09:22 AM bug #8785: Move functionality of buttons to context menu of the character matrix
An important open issue is that it is currently not possible to add a "literature"- or a "default"-description for a ... Andreas Müller
09:19 AM bug #8785 (Feedback): Move functionality of buttons to context menu of the character matrix
"Add description" is still missing a translation. Also I think we should call it "Add specimen description" because i... Andreas Müller
11:39 AM feature request #9054 (New): Allow adding taxon descriptions to matrix for taxa which have no specimen descriptions attached yet
Currently only taxa are shown which do have speciemn descriptions attached. This is not correct because it should als... Andreas Müller
09:54 AM bug #8754 (Feedback): DescriptionElements are not deleted with the Descriptive Data Set
Generally I have problems to understand this ticket.
Do I understand it correctly that the expectation is that del...
Andreas Müller
09:32 AM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
When trying to delete a descriptive dataset I got the following exception. Though it seems as if the delete was execu... Andreas Müller
12:13 AM bug #8662 (Feedback): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
If the tree list is empty it works now as expected.
>Auch wenn Taxa existieren, wird das Kontextmenü angezeigt und...
Andreas Müller

06/03/2020

11:34 PM feature request #7774 (Closed): Show description source for description elements
Works as expected. Nice feature. Andreas Müller
11:25 PM bug #8969 (Closed): Multiple deduplications are not executed
Seems to work as expected. Andreas Müller
11:15 PM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
The problem still exists if you directly click on the moved synonym. If you click on another name and back again the ... Andreas Müller
06:06 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> There is still big one open issue: adding the first specimen does not work by context menu bec...
Katja Luther
04:54 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
Andreas Müller wrote:
> "Classificatorical states" should be "Placement status" as "classificatorical" does not seem...
Andreas Müller
04:48 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
I added "show taxon node status note" to the ticket titel as this task is strongly related (see also #9005) Andreas Müller
04:36 PM feature request #9010 (Feedback): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
"Classificatorical states" should be "Placement status" as "classificatorical" does not seem to be English word (I co... Andreas Müller
04:27 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
On the taxon page in the tabbed version I would move the text above the tabs (immediately below the title). Now it ap... Andreas Müller
02:49 PM feature request #9010: Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
In classification tree it looks fine Andreas Müller
01:28 PM bug #8961 (Closed): Using the selection dialogue for nomenclatural references removes the recently used list
Seems to work as expected. Andreas Müller
01:24 PM bug #9052: NPE in name details view for incomplete name relationships
Please review Andreas Müller
01:23 PM bug #9052 (Resolved): NPE in name details view for incomplete name relationships
Applied in changeset commit:taxeditor|afbd7a15f92a835d0c5da1dc48f9fa20b3dd1235. Andreas Müller
01:22 PM bug #9052 (Closed): NPE in name details view for incomplete name relationships
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/term.service
last remote reque...
Andreas Müller
12:32 PM bug #8903: Remember expansion state in factual data view
For SpecimenDescriptions it seems to work as expected. Andreas Müller
12:24 PM bug #8903 (Feedback): Remember expansion state in factual data view
When testing on TaxonDescriptions I got an CCE:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/r...
Andreas Müller
12:19 PM bug #8954 (Feedback): Details and Supplemental Data View do not save the expansion state of sections again
For the supplemental data view and the details view the behavior seems to be fixed.
Did you also work on the factu...
Andreas Müller
11:49 AM feature request #8958 (Feedback): Add publication year, inReference (journal), and URI to reference bulk editor
Generally this works. Only the year should be improved as the year from sections like book sections might be taken fr... Andreas Müller
11:44 AM bug #9051 (New): Role Project manager should not have right to edit users and creating a new user with missing rights results in two message-boxes
mail AM:
Außerdem kommt nach dem Versuch einen User anzulegen, ohne dass man die Rechte dazu hat, erst ein normale...
Katja Luther
11:38 AM bug #8962 (Closed): Handle widget is disposed after closing Supplemental Data View
I don't know how to review this exactly. The code looks ok as far as I can decide this. Andreas Müller
11:15 AM bug #9050 (New): Context menu item new should be disabled for missing rights
For users without the right to create a new user the context menu of the user bulk editor should be adapted and the n... Katja Luther
10:45 AM bug #8963 (Closed): Selection dialogues should be modal
Seems to work as expected. Andreas Müller
10:35 AM bug #8999 (Closed): Verbatim date not persisted for books
Works as expected. Andreas Müller
10:22 AM bug #9045 (Closed): TextualTypeDesignation throws exception in referencing objects view
I tested with name "Orphaned syn" on rem_conf_am. Code and result is trivial so I close this ticket. Andreas Müller
10:19 AM bug #9047: Search does not return orphaned synonyms
I tested on rem_conf_am with "Orphaned syn*" . It seems to work. I change category as this is a general cdmlib issue... Andreas Müller
10:16 AM feature request #8988 (Closed): Add link button to DOI field for references
Works as expected Andreas Müller
10:15 AM bug #9035 (Closed): Reference details view throws NPE
This is fixed. As it was only a temporary regression during 5.15 development I remove the target version. Andreas Müller

06/02/2020

12:17 PM bug #9049 (Closed): Import Flora of Uzbekistan taxa habitats
Andreas Müller
11:08 AM feature request #9048 (New): Checking number of synonyms when paste them into name editor
mail WB:
ist mir schon passiert und war auch, glaube ich, schon mal Thema:
Eine Funktion, die beim Einfügen von S...
Katja Luther

05/29/2020

03:37 PM bug #9047 (Resolved): Search does not return orphaned synonyms
Applied in changeset commit:cdmlib|ea076318550ed467dd48afce88d5f3929ba20d99. Andreas Müller
02:34 PM bug #9047 (In Progress): Search does not return orphaned synonyms
Andreas Müller
02:34 PM bug #9047 (Closed): Search does not return orphaned synonyms
A name which is currently only used in a synonym which has no accepted taxon (which is dirty data but exists) is curr... Andreas Müller
11:29 AM bug #9045 (Resolved): TextualTypeDesignation throws exception in referencing objects view
Applied in changeset commit:taxeditor|c8dc4e4acf4326bc6bd6c265e8f6b73f35d48d22. Andreas Müller
11:22 AM bug #9045 (Closed): TextualTypeDesignation throws exception in referencing objects view
~~~
last remote method : http://api.cybertaxonomy.org:80/caryophyllales_spp/remoting/common.service
last remote req...
Andreas Müller
11:14 AM bug #8849: NPE in synonym DetailsViewer for synonyms without accepted taxon
I solved the NPE now in a way that synonyms without accepted taxon are not checked for subtree permission (as they si... Andreas Müller
11:10 AM bug #8849 (Resolved): NPE in synonym DetailsViewer for synonyms without accepted taxon
Applied in changeset commit:taxeditor|cd5fdc98f90ec4d26348a785e4c70369144f28f0. Andreas Müller

05/28/2020

10:18 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > I added getSymbol() to TaxonNodeStatus
>
> Woudn't it make...
Andreas Müller
10:14 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
Symbol is now handled in cdmlib, however we still want to find better symbols and a way how to show them in TaxEditor... Andreas Müller
03:18 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
Andreas Müller wrote:
> I added getSymbol() to TaxonNodeStatus
Woudn't it make sense adding `getSymbol()` to `IKe...
Andreas Kohlbecker
01:05 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
I added getSymbol() to TaxonNodeStatus Andreas Müller
10:07 PM feature request #9003 (Duplicate): Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
As this is handled in cdmlib now we can close the ticket as duplicate as explained above. Andreas Müller
05:16 PM feature request #9003 (Resolved): Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
this has been implemented in cdmlib, so I am changing the category.
You can close this issue.
Andreas Kohlbecker
01:06 PM feature request #9003: Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
I added getSymbol() to TaxonNodeStatus Andreas Müller
05:28 PM feature request #9034 (In Progress): simple agent list page with filter function
Andreas Kohlbecker
05:28 PM feature request #9044 (Closed): TaxonNodeDtoBeanProcessor supports new TaxonNodeStatus terms
Andreas Kohlbecker
04:37 PM feature request #9044 (Resolved): TaxonNodeDtoBeanProcessor supports new TaxonNodeStatus terms
Applied in changeset commit:cdmlib|6372bb731bbe9a30d3f6059cd387ad2c6540cff1. Andreas Kohlbecker
03:37 PM feature request #9044 (Closed): TaxonNodeDtoBeanProcessor supports new TaxonNodeStatus terms
The TaxonNodeDtoBeanProcessor needs to include the TaxonNodeStatus see #9005 Andreas Kohlbecker
05:26 PM feature request #9042: EnumTerm symbol and message in web service response
[a.mueller]:
Modellseitig sollten die Enums sehr ähnlich wie Terme gehandelt werden (eigentlich sind es fixe Term...
Andreas Kohlbecker
05:25 PM feature request #9042: EnumTerm symbol and message in web service response
ich überlege hin und her wie wir das am besten machen:
1. Equivalent zu dem anderen Termen also als eigenes Obj...
Andreas Kohlbecker
03:07 PM feature request #9042 (New): EnumTerm symbol and message in web service response
Implementations of `IEnumTerm` may have a message in multiple languages and a symbol.
Implement a Json Bean proces...
Andreas Kohlbecker
05:14 PM feature request #9010 (Resolved): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
This is solved, please see the genus Casus and subordinate taxa for examples:
http://int.e-taxonomy.eu/dataportal/...
Andreas Kohlbecker
04:45 PM bug #5371 (Worksforme): all name parts of taxa with flag doubtful = true are displayed in italic
Andreas Kohlbecker
04:44 PM bug #5371: all name parts of taxa with flag doubtful = true are displayed in italic
The original problem may have been that the title cache was protected.
In general it works as expected:
![](p...
Andreas Kohlbecker
03:32 PM feature request #9043 (Resolved): Add feature "Altitude"
Applied in changeset commit:cdmlib|bef8e98cdb1edb01371fc28ca69723698abdbd84. Andreas Müller
03:27 PM feature request #9043 (Closed): Add feature "Altitude"
The feature is already available in FoCyprus with uuid "1a28ed59-e15f-4001-b5c2-ea89f0012671"
It is available for ...
Andreas Müller
03:00 PM task #9041 (Closed): Import Flora of Uzbekistan taxa altitudes
Andreas Müller
02:57 PM task #8996 (Closed): Import Flora of Uzbekistan taxa
Andreas Müller
02:42 PM task #8996 (Resolved): Import Flora of Uzbekistan taxa
Applied in changeset commit:cdmlib-apps|6b3b78d49baf84f10a5523b8aee575af4013a9d1. Andreas Müller
01:47 PM feature request #9040 (Closed): Implement open button for ORCIDs
... similar to DOIs (#8988) Andreas Müller
11:58 AM bug #9039 (New): When canceling TaxEditor update no new versions are found anymore
What I did:
I checked for updates and got the feedback that a new update was found.
Then I decided to first check...
Andreas Müller
10:24 AM feature request #9038 (Closed): Adapt TaxEditor to use BigDecimal for StatisticalMeasurementValues
for details see #8978
Man issues alread have been solved by bf20bbfd . Some issues did arise when I tested the new...
Andreas Müller

05/27/2020

11:04 PM feature request #8978: Implement measurement values as BigDecimal
Update script works.
Still needs active testing with aggregation algorithm and polytomous key generator if algebra...
Andreas Müller
04:45 PM feature request #8978: Implement measurement values as BigDecimal
The adaption for the editor are done as well, please have a look. Katja Luther
11:00 PM task #9037 (In Progress): Remove old Feature.supportedXXX columns
Andreas Müller
10:58 PM task #9037 (Closed): Remove old Feature.supportedXXX columns
Andreas Müller
10:56 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
This is mostly fixed. 2 remaining issues:
* rename label "status" to "placement status" to clearly distinguish fr...
Andreas Müller
02:50 PM feature request #9033 (Closed): Adapt TaxEditor to new TaxonNode.status
see alos #9005
The 3 checkboxes for unplaced, doubtful and excluded needed to be changed to a dropdown (or a radio...
Andreas Müller
10:53 PM task #9036 (In Progress): Remove old TaxonNode.unplaced/doubtful/excluded columns
Andreas Müller
10:52 PM task #9036 (Closed): Remove old TaxonNode.unplaced/doubtful/excluded columns
Andreas Müller
10:51 PM feature request #9005 (Closed): Make the TaxonNode flags alternatives and change excluded notes to status notes
Update script works and functionality tested in TaxEditor. Andreas Müller
02:46 PM feature request #9005 (Resolved): Make the TaxonNode flags alternatives and change excluded notes to status notes
Andreas Müller
10:41 PM feature request #9027 (Closed): Implement Feature.availableFor
Update script works as expected. Andreas Müller
10:37 PM feature request #9026 (Closed): Implement Feature.supportedDataTypes as EnumSet
The update script works as expected. Andreas Müller
10:34 PM bug #8785: Move functionality of buttons to context menu of the character matrix
There is still big one open issue: adding the first specimen does not work by context menu because the context menu i... Katja Luther
12:18 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
Katja Luther
10:33 PM feature request #8991 (Resolved): Add feature "Flowering Period"
Still need to check if supportsTemporalData is autoamtically created on production (on test and integration it is not... Andreas Müller
10:10 PM feature request #8991 (Closed): Add feature "Flowering Period"
Works, only on test server some terms are still labeled "Flowering Season" as no update script was written for these ... Andreas Müller
10:32 PM bug #9035: Reference details view throws NPE
this should be fixed, please review Katja Luther
10:31 PM bug #9035 (Resolved): Reference details view throws NPE
Applied in changeset commit:taxeditor|ffeb89d337c49cbf09651d6fead3aeec6591725f. Katja Luther
07:59 PM bug #9035: Reference details view throws NPE
Also in the nom. ref. label field the reference does not appear anymore. Don't know if this is related:
![](pictur...
Andreas Müller
07:56 PM bug #9035: Reference details view throws NPE
A similar error occurs when trying to edit the reference via the editing dialog (e.g. when opening the nomenclatural ... Andreas Müller
07:53 PM bug #9035 (In Progress): Reference details view throws NPE
As this is a serious regression it needs to be fixed asap. Andreas Müller
07:52 PM bug #9035 (Closed): Reference details view throws NPE
Using the reference bulk editor is not possible because when clicking on any reference the following NPE is thrown (p... Andreas Müller
10:14 PM feature request #8802 (Closed): Implement flowering period for Flora of Cyprus
Andreas Müller
09:43 PM bug #8964 (Closed): Improve label for homonym relationships
Update script result tested on test server (for DB cdm_greece_bupleurum) Andreas Müller
08:01 PM feature request #8988: Add link button to DOI field for references
Review is blocked by #9035 Andreas Müller
08:00 PM bug #8999: Verbatim date not persisted for books
Review is blocked by #9035 Andreas Müller
07:27 PM bug #8901: Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
Is this fixed and should be reviewed? Andreas Müller
04:02 PM feature request #9034 (Closed): simple agent list page with filter function
for providing persons to IPNI a agent page which can list person filtered by markers is needed.
Extensions of sele...
Andreas Kohlbecker
12:12 PM feature request #7774: Show description source for description elements
please review Katja Luther
12:11 PM feature request #7774 (Resolved): Show description source for description elements
Applied in changeset commit:taxeditor|532ef36053700bf9a053e0bc077797d5859dc0cc. Katja Luther
09:48 AM feature request #9031: Adapt CdmLightExport to new TaxonNode.status
WGB:
um die Kompatibilität zu gewährleisten, wäre mir hier die zusätzliche Einfühurung eines bol. attributs Doubtf...
Andreas Müller

05/26/2020

04:26 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
Andreas Müller wrote:
> Should this be reviewed by someone?
I think this is not really needed, but having someone...
Andreas Kohlbecker
04:11 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
Should this be reviewed by someone? Andreas Müller
04:23 PM feature request #9027 (Resolved): Implement Feature.availableFor
Andreas Müller
04:18 PM feature request #9032 (Closed): Implement Feature.availableFor in TaxEditor
The alternatives should be available as checkboxes in the Feature details view similar to supportsXXX.
Also the va...
Andreas Müller
03:31 PM feature request #9022: Implement lifespan for Person Details View
Life span of a person, or date a person has published nomenclatural novelties, e.g.
1795-1876, 1961-, -2016, fl. 20...
Wolf-Henning Kusber
02:39 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
Now the buttons are removed and add and delete is moved to the context menu. If a taxon node is selected the specimen... Katja Luther
02:35 PM bug #8783 (Resolved): Massive Heap consumption in server instance opening the Description-Matrix editor
This seems to be fixed. Katja Luther
01:13 PM feature request #9031 (Closed): Adapt CdmLightExport to new TaxonNode.status
Currently we have boolean columns "unplaced" and "excluded". Instead we should have the 1 status column which may hav... Andreas Müller
12:14 PM feature request #9005 (In Progress): Make the TaxonNode flags alternatives and change excluded notes to status notes
Renamed excludedNote -> statusNote Andreas Müller
11:48 AM feature request #9009: Add structure to store media metadata
as size information like width and height is already stored in MediaRepresentationPart it is not necessary to store s... Andreas Müller
11:42 AM feature request #8802 (Resolved): Implement flowering period for Flora of Cyprus
Andreas Müller
11:40 AM task #8853 (Closed): Import Aizoaceae from Kew World Checklist to Caryo spp
Andreas Müller
11:40 AM feature request #9018 (Closed): Import Casearia
Andreas Müller
11:37 AM task #9030 (Closed): Import flowering periods for Cyprus
Andreas Müller
11:28 AM bug #8964 (Resolved): Improve label for homonym relationships
Update script was added Andreas Müller
11:27 AM feature request #9026 (Resolved): Implement Feature.supportedDataTypes as EnumSet
Andreas Müller
11:27 AM bug #8752 (Worksforme): Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset
I could not reproduce this problem, so I close this with worksforme Katja Luther
10:23 AM bug #8753 (Closed): EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
Katja Luther
10:21 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
please review. Katja Luther
09:04 AM bug #9029 (Closed): Adapt character matrix to using dtos instead of whole cdm entities
The character matrix uses only wrappers collecting the cdm entities used for a matrix row. This should be changed to ... Katja Luther

05/25/2020

08:58 AM bug #9028 (New): Endless loop when opening the context menu of name facts
Hallo,
beim Versuch, ein Name Fact einzugeben, nach der Inserierung des Factual Data Sets, beim Aufruf des Kontextme...
Katja Luther

05/24/2020

04:37 PM feature request #9027 (Closed): Implement Feature.availableFor
This should be implemented as EnumSet. It allows to distinguish if a Feature is available for Taxon, TaxonName and/or... Andreas Müller
04:32 PM feature request #9026 (Closed): Implement Feature.supportedDataTypes as EnumSet
Andreas Müller

05/20/2020

03:29 PM bug #7189 (Feedback): Taxeditor connect dialog high-dpi suport
this issue is mainly fixed. Only the width of the comboboxes is a bit too wide.
**I left inactivated lines comment...
Andreas Kohlbecker
03:22 PM bug #7189 (In Progress): Taxeditor connect dialog high-dpi suport
Andreas Kohlbecker
02:50 PM feature request #9025 (Resolved): allow for creating a new schema in empty dbs via the remote login dialog
Applied in changeset commit:taxeditor|1e4ec948da72558d39ffdd88c9bcbadd518ba7e5. Andreas Kohlbecker
02:48 PM feature request #9025 (Closed): allow for creating a new schema in empty dbs via the remote login dialog
this is a followup ticket to #9023.
The remote login dialog should set the "cdm.forceSchemaCreate" option for a db...
Andreas Kohlbecker
02:26 PM bug #8901: Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
the deletion of the aggregation description should be fixed, but attention, if the description is referenced in a cdm... Katja Luther
01:50 PM bug #9024 (New): repeated startups of the managed server eats up harddisk space
During the startup of the manages cdm server for each startup the cdmlib-remote-webapp.war is extracted the system tm... Andreas Kohlbecker
10:22 AM feature request #9023: option to start cdm webapp with hibernate.hbm2ddl.auto = create
prior running
~~~
mvn package -DskipTests
~~~
is needed
Andreas Kohlbecker
09:29 AM feature request #9023: option to start cdm webapp with hibernate.hbm2ddl.auto = create
running the integration tests from the parent project casues probelms:
~~~
mvn integration-test -pl cdmlib-remote...
Andreas Kohlbecker

05/19/2020

06:08 PM feature request #9023 (Resolved): option to start cdm webapp with hibernate.hbm2ddl.auto = create
Andreas Kohlbecker
05:56 PM feature request #9023 (Closed): option to start cdm webapp with hibernate.hbm2ddl.auto = create
Andreas Kohlbecker
05:54 PM feature request #9023 (Resolved): option to start cdm webapp with hibernate.hbm2ddl.auto = create
Applied in changeset commit:cdmlib|5666c59e03073f5bbc982cb681203fb4ba177946. Andreas Kohlbecker
05:45 PM feature request #9023 (Closed): option to start cdm webapp with hibernate.hbm2ddl.auto = create
in compliance with the existing start parameter `cdm.forceSchemaUpdate` which can be set as system parameter or Serv... Andreas Kohlbecker
05:10 PM bug #8901 (In Progress): Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
Katja Luther
02:21 PM bug #8783 (In Progress): Massive Heap consumption in server instance opening the Description-Matrix editor
The implementation for the rowWrappers changed, having a look at the consumption shows a smaller heap (opening the ch... Katja Luther
12:20 PM feature request #9022 (Closed): Implement lifespan for Person Details View
Needed for internal and external data validation Andreas Müller
09:34 AM bug #9021: Feedback for missing rights on TaxonNode missing
Andreas Kohlbecker wrote:
> Das müsste ja für jede View gesondert angezeit werden.
>
> Wie wäre es mit einem "Bar...
Andreas Kohlbecker
 

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