Activity
From 04/13/2020 to 05/12/2020
05/12/2020
- 03:19 PM feature request #5942: Advanced Search filter to exlude Distributions with status absent
- As this is an important feature for E+M (and other treatments) I suggest to move this ticket to 5.16
- 03:18 PM feature request #5942: Advanced Search filter to exlude Distributions with status absent
- I agree (as long as there is a one button click to include all non-absent status because otherwise the list of status...
- 01:22 PM feature request #5942: Advanced Search filter to exlude Distributions with status absent
- Andreas Kohlbecker wrote:
> The original requirement as still reflected by the subject of this ticket is a special c... - 01:21 PM feature request #5942: Advanced Search filter to exlude Distributions with status absent
- The original requirement as still reflected by the subject of this ticket is a special case of a general filter for d...
- 01:16 PM feature request #5942: Advanced Search filter to exlude Distributions with status absent
- Hallo,
man sollte im Euro+Med-Portal bei der advanced search unbedingt auch nach Status suchen/filtern können. Es ...
05/11/2020
- 05:02 PM feature request #9009 (Closed): Add structure to store media metadata
- Media files can contain metadata (Exif, IPCT, PhotoshopMetadata, etc). The Cdm needs to be able to store data extract...
- 04:12 PM task #9008 (Closed): Add chapter "Taxonomic concepts and source citations in the EDIT Platform" to documentation "Manual-EDIT-Platform"
- Der text stammt aus dem Nepenthes-Artikel in Willdenowia - https://bioone.org/journals/willdenowia/volume-48/issue-3/...
- 01:20 PM Revision 1a4699cd (taxeditor): adding missing dependencies for kml and iiif
- 08:30 AM Revision 3913738e (taxeditor): ref #8753: add changes in EditorUtil for closing descriptive dataset editors
- 08:26 AM Revision f3d6cef7 (taxeditor): ref #8753: add IDescriptiveDatasetEditor
05/08/2020
- 01:38 PM bug #9007 (Closed): Enable i18n support for media description UI
- Currently it shows only English/Default language. If a description is stored in another language this text is not vis...
- 01:01 PM Revision 1f13376b (cdmlib-apps): cleanup
- 01:01 PM Revision 1a53e0b8 (cdmlib-apps): ref #7075 improve language handling Flora of Greece image import
- 12:52 PM Revision b20994d5 (cdmlib): ref #7075 improve language handling and clean up for MediaExcelImport
05/07/2020
- 06:25 PM feature request #9006 (New): Check basionym/replaced synonym relations if a synonym is removed from a homotypic group
- When a synonym is removed from a homotypic group it may still have basionym or replaced synonym relations to names in...
- 04:31 PM bug #8753: EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- This problem was different as I thought before, but now it does not appear anymore with the dump from #8752.
- 04:09 PM bug #8753 (Resolved): EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- This problem is caused because of a still available selection of the descriptive dataset. This is solved by setting t...
- 11:17 AM bug #8753: EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- Katja Luther wrote:
> this seems to be solved with fixing the deletion of descriptive datasets. I could not reproduc... - 04:27 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- 11:33 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- mail to AM and NK:
Hallo ihr beiden,
ich bin gerade dabei die Character Matrix Tickets ab zu arbeiten. Ein Punk... - 04:10 PM Revision 0ee41c8b (taxeditor): ref #8753: set selection to null after deleting descriptiveDataSet
- 01:41 PM Revision 1aad0d60 (cdmlib): ref #8785: deleteDescriptiveDataset as long running task
- 11:44 AM Revision 5982fda4 (taxeditor): ref #8785: add menu item for remove desc and remember this desc and remove while saving
- 11:39 AM Revision bdc9ce9d (cdmlib): ref #8785: add method to remove a list of descriptions from a descrciptive dataset
- 10:59 AM Revision cae389f9 (cdm-dataportal): comment on specimen media types
- 10:39 AM Revision 23925f2c (cdm-dataportal): gitignore
05/06/2020
- 01:06 PM Revision 54d8d17d (cdmlib): fix #8991 change flowering season to flowering period
- 01:06 PM Revision 6cdffae2 (cdmlib): cleanup
- 11:59 AM feature request #9005 (Closed): Make the TaxonNode flags alternatives and change excluded notes to status notes
- Currently we have unplaced, excluded and placement doubtful as flags.
It is expected that these neve occurr in par... - 11:42 AM feature request #9004 (Closed): Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
- ... and make it an OriginalSource instead of ref+detail.
Later also change accordingly in TaxEditor => new ticket ... - 11:25 AM feature request #9003 (Duplicate): Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
- this duplicates #9002 but for the dataportal part.
For description see there. - 11:24 AM feature request #9002 (New): Find suitable symbols for excluded, unplaced, placement doubtful
- for TaxonNodes (... and maybe also for doubtful, status unknown and published from Taxon(Base) ).
These symbols sh... - 10:23 AM feature request #9001 (New): Add ROR identifier to identifier types
- https://ror.org/
- 10:15 AM bug #8753: EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- Andreas K., can you please decide if this needs to be reviewed as you reported the ticket?
If not necessary we shoul... - 09:20 AM bug #8753 (Worksforme): EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- this seems to be solved with fixing the deletion of descriptive datasets. I could not reproduce this exception anymore.
- 09:52 AM task #6981: Migrate to Java 11
- Another interesting read in this context : https://dzone.com/articles/guide-for-supporting-multiple-versions-of-java-...
- 09:38 AM bug #9000 (Closed): UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
~~~
[cyprus] 09:34:52,961 ERROR [qtp1644443712-27][eu.et.cd.re.co.ii.ManifestController] - Problem while loading...- 09:31 AM Revision 09305c9e (cdmlib): setting content-type for iiif manifest controller
- 09:31 AM Revision c83d415f (cdmlib): ref #6113 improving unit title in occurrences KML
- 09:31 AM Revision d4782129 (cdmlib): Adding metadata loading error details to iiif manifest
- 08:27 AM bug #8999: Verbatim date not persisted for books
- please review
- 08:27 AM bug #8999: Verbatim date not persisted for books
- This problem was caused by missing handling of events in verbatim field. This is fixed now.
- 08:24 AM bug #8999 (Resolved): Verbatim date not persisted for books
- Applied in changeset commit:taxeditor|98ac1b05a056526ef81cf11677300b38beb02bf9.
- 08:22 AM Revision 98ac1b05 (taxeditor): fix #8999: fix persisting of verbatim date
05/05/2020
- 10:22 PM bug #8999 (Closed): Verbatim date not persisted for books
- WGB:
in einem Buch (konkret hier: Hartmann, H. E. K., Illustrated Handbook of Succulent Plants: Aizoaceae F-Z. 200... - 03:34 PM feature request #8883: additional media list services as iiif manifest service
- moving to next milestone and lowering priority.
The fsi image viewer is only used in the taxon page so there switc... - 03:13 PM bug #8754 (In Progress): DescriptionElements are not deleted with the Descriptive Data Set
- the deletion of larger datasets takes some time, therefore it is implemented as a long running task now. Need to test...
- 10:31 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- A new method for deletion of descriptive datasets are implemented, which uses DescriptionService.deleteDescription() ...
- 03:01 PM bug #8998: Terms created by abcd import should always be part of a vocabulary
- Is this fixed and should be reviewed?
- 03:01 PM bug #8998: Terms created by abcd import should always be part of a vocabulary
- AM:
in algaterra_new gibt es eine Reihe DNA Marker Terme (z.B. „18S V4 rRNA“). Diese sind alle am 28.2.2020 erstel... - 11:49 AM bug #8998 (Resolved): Terms created by abcd import should always be part of a vocabulary
- In abcd import dnaMarker are created if not existing, they are not added to a vocabulary, but should. The vocabulary ...
- 01:58 PM bug #6282 (Rejected): FSI image viewer not working with https
- no longer needed now that we integrated the universal viewer
- 01:53 PM feature request #8968: filter Bulk editor for created by
- @ Katja: Services müssten doch alle verfügbar sein?! Kannst Du den Arbeitsaufwand für eine Implementierung abschätzen...
- 12:16 PM feature request #8888 (Closed): responsive width for universal viewer
- 12:16 PM feature request #8888 (Resolved): responsive width for universal viewer
- Applied in changeset commit:cdm-dataportal|2020828c0746e826bc31cb010b4c17c4bac5eb94.
- 12:15 PM Revision 2020828c (cdm-dataportal): fix #8888 adapting uv width to parent div width
- 11:40 AM Revision dec805d6 (cdmlib): fix dnaMarker creation, add to vocabulary
- 11:13 AM Revision 6ec49f60 (cdm-vaadin): cleaning up code and fixing typo in term title
- 11:13 AM Revision d0618dd7 (cdm-vaadin): ref #8986 setting up maven-enforcer-plugin with fail=false
- 10:56 AM bug #8752 (In Progress): Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset
- I could not reproduce this problem, sometimes an exception is thrown because the creation of the row failed, then the...
- 10:26 AM Revision af46e1a1 (cdmlib): ref #8754: implement delete method for descriptiveDataSet
- 10:18 AM feature request #8997 (New): Improve display of classifications and non taxon names in search results
- Walter suggested:
Im Suchresultat wird nach dem Namen immer Leerzeichen Doppelpunkt Leerzeichen Klassifikationsnam... - 08:25 AM Revision f8a489fd (cdm-dataportal): removing unused js library reference
- 12:50 AM task #8996 (Closed): Import Flora of Uzbekistan taxa
- 12:41 AM Revision e61edee4 (cdmlib-apps): ref #8978 adapt app-import to StatisticalMeasurementValue.value as BigDecimal
05/04/2020
- 06:53 PM bug #8995 (New): Guarantee a term always has a vocabulary
- Some production databases do have terms which are not attached to vocabularies.
This has multiple reasons.
In gen... - 06:31 PM Revision 8370de0b (cdm-vaadin): cleanup
- 05:08 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Deleting the descriptive dataset calls the delete method of IdentifiableServiceBase, but should be an extra delete me...
- 05:04 PM bug #8806 (In Progress): Multiple representations problem on saving Desriptive Data Set
- Could not reproduce the problem anymore, but needs further testing.
- 02:18 PM bug #8806: Multiple representations problem on saving Desriptive Data Set
- this seems to be related to open the same descriptive dataset in descriptive dataset editor and in character matrix. ...
- 05:02 PM Revision defea9e9 (taxeditor): ref #8806: bind session to matrix editor when opening and focus
- 03:56 PM bug #8994: universal image viewer fails loading libs when clean urls is disabled
- check if it is also working on the test server
- 03:56 PM bug #8994 (Resolved): universal image viewer fails loading libs when clean urls is disabled
- Applied in changeset commit:cdm-dataportal|6c1a67120fd6c9fc5076137ff183a57f01e37827.
- 03:27 PM bug #8994 (In Progress): universal image viewer fails loading libs when clean urls is disabled
- with `clean-urls = false`, this file is found
http://edit.test/d7/cyprus/sites/cyprus/modules/cdm_dataportal/js/u... - 03:23 PM bug #8994 (Closed): universal image viewer fails loading libs when clean urls is disabled
- * This url works: http://edit.test/d7/cyprus/cdm_dataportal/taxon/2e58b1ab-03a9-4693-bcec-3b8e7f04b572/images
* this... - 03:56 PM Revision 6c1a6712 (cdm-dataportal): fix #8994 adapting universalviewer_path according to clean urls usage
- 03:16 PM bug #8900 (Closed): Layout issues with new image viewer
- 03:15 PM bug #8900 (Resolved): Layout issues with new image viewer
- Applied in changeset commit:cdm-dataportal|16f4ad91e5dc8bac561e7bee5bc11c4041676281.
- 03:15 PM Revision 16f4ad91 (cdm-dataportal): fix #8900 setting UV width from parent div
- 01:39 PM bug #8662: "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
- now the menu item is available only if the selection is a taxon node, so it should show up, only when the node can be...
- 01:28 PM bug #8662 (Resolved): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
- Applied in changeset commit:taxeditor|b529af0445dcd7025081ff2c1c40926a29f9d79c.
- 01:29 PM Revision b529af04 (taxeditor): fix #8662: adapt canExecute to show remove taxon only when top level node is selected
- 12:12 PM feature request #4837 (Closed): responsive layout & theme
- the review for this ticket is over due since 4 years.
I am closing the issue now. - 11:50 AM feature request #4488 (Closed): Specimen data points in map should show FieldUnit information
- 11:50 AM feature request #6113 (Closed): webservice to expose FieldUnits related to a Taxon or TaxonName as KML and/or GML
- ticket complete, I think reviewing by someone else is not needed, therefor I am closing this ticket directly.
- 11:48 AM feature request #8972 (Closed): integrate kml layers into map viewer
- no problems found in the flora cuba which could be caused by the change to the `zoomToClosestLevel = false` setting....
- 11:41 AM Revision a25116e0 (cdm-dataportal): fixing broken font awesome loading icon in map
- 11:40 AM Revision 199e1e3d (cdm-dataportal): removing unused js library reference
- 10:44 AM Revision 1c376cd7 (cdmlib): cleanup classification controller
- 10:41 AM Revision 39f8b71e (cdmlib): ref #1447 implement getNameCache
- 10:29 AM Revision 2767101c (cdmlib): cleanup
- 10:26 AM feature request #8993 (New): suppress the map in name pages and registration pages if there are no locations to display:
- copied from #8972
suppress the map in name pages and registration pages if there are no locations to display
Fo... - 10:20 AM Revision 43c5bf8b (cdm-dataportal): ref #8972 refactoring: moving map compose method into maps.inc and simplifying code
- 09:59 AM bug #8816 (Feedback): NoSuchElementException during adding Specimens to Matrix Editor
- I cann't reproduce this exception, could you remember what you did before?
- 09:31 AM feature request #8855: Show error radius in EDIT portal
- Super! Danke & das hilft allen Projekten, die Karten zeigen!
- 09:23 AM feature request #8855 (Closed): Show error radius in EDIT portal
- Fully implemented, please see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration/http...
- 09:29 AM bug #3169 (Rejected): Maps, Specimens: error openlayers.js due to point map in portal
- this issue is for sure no longer relevant as we switched to a completely different technology for showing specimen ma...
- 08:46 AM task #8840: Display identifiers in the dataportal
- Hallo,
zu diesem Punkt:
Also consider possibility (configurable) to display WFO- and IPNI- Name Identifiers as ... - 08:41 AM task #8992 (New): Configure Apache to treat dataportal URLs as case insensitiv
- This should be configurable by using the spelling module:
~~~
LoadModule speling_module modules/mod_speling.so
...
04/30/2020
- 11:53 AM bug #8903 (Resolved): Remember expansion state in factual data view
- This should be fixed now. Please review.
- 11:52 AM Revision 39fb1444 (taxeditor): ref #8903: fix remember expand level in factual data view
- 11:40 AM feature request #8991 (Resolved): Add feature "Flowering Period"
- Applied in changeset commit:cdmlib|dfdb2bfddf5df2fa7b0ba256c6ec0779aafd5f9a.
- 11:37 AM feature request #8991 (Closed): Add feature "Flowering Period"
- 11:39 AM Revision dfdb2bfd (cdmlib): fix #8991 add Feature flowering season
- 11:25 AM Revision 9287a99d (cdmlib): minor on ConcurrentSessionTest.xml
- 11:21 AM Revision f9956144 (cdmlib): cleanup
- 10:17 AM feature request #8990 (Closed): Implement flowering periods (temporal facts) in TaxEditor
- This includes
* ~~a new field "supportsTemporalData" in the Feature details view~~
* ~~a new details view for th... - 10:16 AM feature request #8989 (Closed): Implement flowering periods (temporal facts) in dataportal
- For the beginning a text based representation should be enough.
Later a visual representation like in http://flora...
04/29/2020
- 03:57 PM feature request #8972 (Resolved): integrate kml layers into map viewer
- this is complete now. BUT it was necessary to set `zoomToClosestLevel = false`
Which as been introduced for #5683 wi... - 03:16 PM feature request #8972 (In Progress): integrate kml layers into map viewer
- 03:54 PM feature request #8988 (Closed): Add link button to DOI field for references
- Same as for URL field
- 03:53 PM Revision 108f1865 (cdm-dataportal): ref #4257, ref #8972 setting zoomToClosestLevel = false to prevent from hidden features in KML layers
- 03:30 PM feature request #4488: Specimen data points in map should show FieldUnit information
- this is now complete
- 03:28 PM Revision d5c5cd81 (taxeditor): fix #8954: fix expansion state
- 03:27 PM bug #8954: Details and Supplemental Data View do not save the expansion state of sections again
- this should be fixed, please review.
- 03:27 PM bug #8954 (Resolved): Details and Supplemental Data View do not save the expansion state of sections again
- Applied in changeset commit:taxeditor|d5c5cd81ed72f663241798765e14082cb3ea522c.
- 03:25 PM feature request #4257 (Closed): specimen map should zoom to area of distribution
- 03:23 PM Revision 64f6df71 (cdm-dataportal): ref #4257, ref #8972 zooming map to kml layer feature bounds
- 02:31 PM feature request #8978 (Resolved): Implement measurement values as BigDecimal
- 02:06 PM Revision 34dba7f7 (taxeditor): fix #8958: add additional rows to reference bulk editor - continue
- 02:05 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- please review
- 02:00 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
- Applied in changeset commit:taxeditor|1391e8f98560e8415f6b48b0476a45ef1b6b94bb.
- 02:02 PM Revision 1391e8f9 (taxeditor): fix #8958: add additional rows to reference bulk editor
- 01:53 PM Revision 7844642a (cdm-dataportal): ref #8972 switching type_designations_maps to kml
- 01:52 PM Revision a0880292 (cdmlib): ref #6113 more kml web services and a missing name service method
- 12:08 PM bug #8969 (Resolved): Multiple deduplications are not executed
- 12:08 PM bug #8969 (New): Multiple deduplications are not executed
- The first solution is implemented, please review.
- 11:36 AM bug #8969 (Resolved): Multiple deduplications are not executed
- Applied in changeset commit:taxeditor|170f6932192925c4e5671309e2da88d4b61cd3f3.
- 11:58 AM Revision ef1e39dd (taxeditor): fix #8969: externalize strings
- 11:57 AM Revision 7ee568a3 (cdmlib): ref #8986 solving atrifact version conflict
- 11:45 AM task #8986 (Closed): use Maven Enforcer plugin to check for dependency version conflics and to enforce the minimum maven version
- done for all listed projects.
cdm-vaadin still has conflicts but this will be handled in another ticket: #8987 - 11:39 AM task #8986 (In Progress): use Maven Enforcer plugin to check for dependency version conflics and to enforce the minimum maven version
- 10:22 AM task #8986 (Closed): use Maven Enforcer plugin to check for dependency version conflics and to enforce the minimum maven version
Links:
* http://maven.apache.org/enforcer/maven-enforcer-plugin/index.html
* Usage: http://maven.apache.org...- 11:44 AM task #8987 (New): manage dependencies to resolve version conflicts
- see the report in the output of `mvn validate` for existing conflicts
The `fail=true` for the Maven Enforcer plug... - 11:38 AM Revision ba1a280e (cdmlib): ref #8986 maven-enforcer-plugin: fail=true and re-enabling maven version check
- 11:37 AM Revision 79f4724d (cdmlib): ref #8986 maven-enforcer-plugin: fail=true and re-enabling maven version check
- 11:34 AM Revision 170f6932 (taxeditor): fix #8969: add third button for continue without saving
- 11:34 AM Revision bdda8f90 (cdm-webapp): ref #8986 setting up maven-enforcer-plugin with fail=true
- 11:13 AM Revision c5d02ae1 (cdmlib): ref #8986 maven enforcer plugin: disabling maven version test
- 11:09 AM Revision 97b44db6 (cdmlib): ref #8986 managing all conflicting artifact versions
- 10:26 AM Revision ca837203 (cdmlib): ref #8986 setting up maven-enforcer-plugin for all cdmlib modules
- 09:36 AM Revision fcdb23af (cdmlib): ref #6113, ref #8985 adding replacement OPTIONS service only for the KML controller
- 09:34 AM task #8985 (New): Enable the general controller for OPTIONS requests
- The `eu.etaxonomy.cdm.remote.controller.OptionsController` had to be disabled and was replaced by `eu.etaxonomy.cdm.r...
04/28/2020
- 05:40 PM Revision 30ae270f (cdmlib): ref #6113 tempororily disabling the OptionsController
- 05:10 PM Revision 98fe0c12 (cdmlib): ref #6113 fxing NPE
- 05:01 PM Revision 09b9fc11 (cdmlib): excluding org.eclipse.emf dependencies
- 05:00 PM Revision 57ece50a (cdmlib): adding maven-enforcer-plugin commented
- 02:21 PM bug #8328 (Closed): Unpublished record visible in Portal if related name is published
- Checked in both portals.
Navicula insula, Ulva olivacea.
Function tested with Basionym (publ.), 1. new combination ... - 02:09 PM bug #8984 (New): Registration search result list: Format display of two type specimens
- This is related to the Registration search result list:
Description: 1 type is displayed and a dot is added by the... - 01:51 PM feature request #8980: Type specimen editor, collection data field misused by users
- Please check wording.
- 11:46 AM feature request #8983: authors and team in combobox better distinguishable
- estimate effort first!
- 11:45 AM feature request #8983 (New): authors and team in combobox better distinguishable
- we discussed two options:
1. show all atomized data in the select list
2. show all atomized data when an item is ... - 10:29 AM Revision 1ef5371d (cdmlib): using embedded jetty in launcher
- 10:28 AM Revision dfe8c2de (cdmlib): ref #6113, ref #4488 de-duplicating field units
- 10:22 AM Revision 2871509d (cdm-dataportal): ref #8972, ref #8855, ref #4488 modified representation of field units in balloons
04/27/2020
- 05:05 PM Revision b74054d7 (taxeditor): updating README
- 03:57 PM feature request #8982 (New): Check duplicates in author teams
- If identical authorteams are selected twice, it would be great to see a WARN before saving the duplicate.
"This au... - 03:51 PM feature request #8981 (Closed): Improve NameStatus in UI
- To improve the name status entry in Vaadin UI it is proposed to show the fields only if requested.
rename:
Status... - 02:49 PM feature request #8980 (New): Type specimen editor, collection data field misused by users
- In PhycoBank Type specimen editor the field "Collection" was left open, the field "Access. num." was filled with the ...
- 02:42 PM feature request #8979 (Closed): Prevent misuse of field initial for personal names
- Problem in PhycoBank: Field "inital" was used for Intial of given name and inital of family name (without dots).
The... - 10:26 AM Revision d9292dce (taxeditor): ref #8857: move taxon creation to server - continue
04/25/2020
- 08:21 PM feature request #8978 (Closed): Implement measurement values as BigDecimal
- for details on how to do different scaling see also #4499#note-1
04/24/2020
- 09:45 PM Revision 7af31945 (cdmlib): revert small changes
- 04:07 PM feature request #6416: Change sortindex of keynodes
- Katja Luther wrote:
>Sometimes it is needed that the alternatives of a polytomous key node are sorted in a different... - 03:00 PM Revision 68676332 (cdmlib): revert small changes
- 02:54 PM Revision e1e79987 (taxeditor): ref #8969: prior deduplication is saved when clicking ok
- 02:37 PM Revision 249f2a3d (cdmlib): ref #8857: createTaxonDto as parameter for taxon creation - continue
- 02:28 PM Revision 2c6df741 (taxeditor): ref #8857: move taxon creation to server
- 02:24 PM Revision d4b8e272 (cdmlib): ref #8857: createTaxonDto as parameter for taxon creation
- 11:07 AM Revision 988b213a (cdm-server): adapt maven min version and cleanup
- 10:59 AM Revision 150f62d9 (taxeditor): cleanup
- 10:58 AM Revision 43e0aadd (cdm-server): Revert "ref #6113 OSGeo Repository to CDM Server"
- This reverts commit ad6c5f7d371005ab61f56e76060431eb82c0a82c.
04/23/2020
- 06:40 PM Revision 31504d6a (cdm-webapp): Revert "ref #6113 add OSGeo Repository to cdm-webapp"
- This reverts commit 3c12d463d957bca4213eb8eb0d0a0875a42df7ed.
- 06:39 PM Revision 1eb2de87 (cdm-vaadin): Revert "ref #6113 add OSGeo Repository to vaadin"
- This reverts commit 3ec5217256dfde494c2380a902848313be3e6863.
- 06:08 PM Revision 3c4f9241 (cdmlib): Revert "ref #6113 temporarily remove kmlMarshaller"
- This reverts commit d591d6d83894d7a93fd2fd4295f3314c69cbc7d6.
- 06:08 PM Revision 533b841a (cdmlib): ref #6113 exclude old jaxb version dependencies from JavaAPIforKml
- 05:05 PM Revision 292150f8 (cdmlib): cleanup
- 05:03 PM Revision d591d6d8 (cdmlib): ref #6113 temporarily remove kmlMarshaller
- 05:02 PM Revision 3cf31dea (cdmlib): Revert "ref #6113 temporarily remove kmlMarshaller"
- This reverts commit 6a4d8b86f4322567cc0d52f04270a9903dfe026b.
- 04:50 PM Revision 6a4d8b86 (cdmlib): ref #6113 temporarily remove kmlMarshaller
- 04:32 PM Revision 3c12d463 (cdm-webapp): ref #6113 add OSGeo Repository to cdm-webapp
- 04:21 PM Revision 3ec52172 (cdm-vaadin): ref #6113 add OSGeo Repository to vaadin
- 04:03 PM Revision ad6c5f7d (cdm-server): ref #6113 OSGeo Repository to CDM Server
- 11:10 AM feature request #8977 (New): Allow filtering webservices on multiple taxon subtrees
- WGB:
Noch eine Frage: Ist es möglich, zwei Familien in ein Portal einzuschließen, auch wenn diese keinen exklusiven ...
04/22/2020
- 07:36 PM bug #8976 (New): error in tagged_text_extract_reference_and_detail()
- see http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/polytomousKey/f36b96a1-925b-463d-b...
- 07:07 PM feature request #8975 (Closed): Name Status filtered in UI
- In PhycoBank Vaadin, all available status can be selected.
For PhycoBank just a few nomenclatural status are relevan... - 06:21 PM feature request #8657 (Closed): Order description element in portal according to CharacterTree
- I move the indentation issue to #8798 as it fits better there. And close this ticket.
- 06:12 PM feature request #8657 (Feedback): Order description element in portal according to CharacterTree
- ~~Andreas K., can you please check if the existing identation is caused by (wrong) handling of tree hierarchy or by a...
- 05:49 PM feature request #8657: Order description element in portal according to CharacterTree
- Currently only a flat list is created. I opened a new ticket to discuss if also the hierarchical structure should be ...
- 05:41 PM feature request #8657: Order description element in portal according to CharacterTree
- Maybe this ticket also covered the "freetext" description ordering like on http://caryophyllales.org/cactaceae/cdm_da...
- 05:39 PM feature request #8657: Order description element in portal according to CharacterTree
- Example URL is: http://caryophyllales.org/cactaceae/cdm_dataportal/description/f4fc4b11-90c7-4a02-b236-2d58f5891e6e
- 06:19 PM feature request #8798: description page: Show character hierarchy
- Andreas K., can you please check if the existing identation is caused by (wrong) handling of tree hierarchy or by a w...
- 06:19 PM feature request #8798: description page: Show character hierarchy
- This seems to be closely related to #8657 Maybe it is even a duplicate.
- 06:13 PM bug #8766 (Closed): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- This seems to be fully and correctly implemented. Norbert, please reopen if you think there are open issues.
- 06:01 PM task #8974 (New): [DISCUSS] Should freetext descriptions reflect the feature tree hierarchy and/or empty feature nodes?
- Same as #8973 but for the "freetext" descriptions like in http://caryophyllales.org/cactaceae/cdm_dataportal/taxon/b1...
- 05:47 PM task #8973 (New): [DISCUSS] Should description tables reflect the feature tree hierarchy and/or empty feature nodes?
- Currently description tables are flat list which are ordered according to the related feature tree but do not show th...
- 05:40 PM feature request #6113 (In Progress): webservice to expose FieldUnits related to a Taxon or TaxonName as KML and/or GML
- 05:29 PM feature request #8855 (Resolved): Show error radius in EDIT portal
- solved even if not all kml web services are available. Therefore the display of error radius is not possible for all ...
- 05:17 PM feature request #8972 (Closed): integrate kml layers into map viewer
- 05:09 PM feature request #8972 (Closed): integrate kml layers into map viewer
- use the output from #6113 in the data portal
* extend openlayers_map.js and map.inc to support kml layers provided... - 05:15 PM feature request #4488 (Resolved): Specimen data points in map should show FieldUnit information
- once this is available in the test portal we need to gather feedback from users (corvids, campanula, algaterra, phyco...
- 05:12 PM Revision c1fc969a (cdm-dataportal): ref #8972, ref #8855, ref #4488 using kml response to show specimen points in maps with data in balloon popups with links
- 05:06 PM Revision 5f5cfe6a (cdmlib): ref #6113 producing more complete kml for DerivedUnits & general controller for HTTP OPTIONS requests
- 05:06 PM Revision e8b0cf59 (cdmlib): developer doc for LifeCycle management
- 05:06 PM Revision c795a3a1 (cdmlib): ref #6113 dependencies for gis and kml functionality
- 12:24 PM bug #8970: Moving a taxon to another position often closes the parent nodes
- WGB:
ja, mit „nach oben in der Hierarchie“ meinte ich zum Elter, nach unten in ein anderes Kind (wie im Beispiel).
... - 11:56 AM bug #8970 (Worksforme): Moving a taxon to another position often closes the parent nodes
- When moving a taxon to another parent taxon node in the taxon navigator the new and the old taxon nodes are often clo...
- 12:23 PM bug #8971 (New): Long running tasks in taxon navigator should disable the navigator
- WGB:
Ein [...] Problem ist, dass während dieses Prozesses (der manchmal etwas dauern kann) ein Doppelklick auf einen... - 12:04 PM feature request #8777: Make visiblity of CDM Source configurable
- CDM Source has primarily been introduced by additivity but it has negative impacts on other DBs. Therefore I add the ...
- 11:58 AM bug #8832: Choosing the area for distribution in details view clears the selected status
- So I guess we should move it back to 5.13
- 11:10 AM bug #8832 (Resolved): Choosing the area for distribution in details view clears the selected status
- this was already solved with Revision 5a9bfdf8.
- 09:28 AM bug #8969: Multiple deduplications are not executed
- AM:
Ich habe es selber gerade getestet und es ist reproduzierbar. Vermutlich wird die Meldung vor der zweiten Dedu... - 09:24 AM bug #8969 (Closed): Multiple deduplications are not executed
- If you deduplicate (e.g. in reference bulk editor) a group of references and than without saving try to deduplicate a...
04/21/2020
- 02:41 PM feature request #8968 (Closed): filter Bulk editor for created by
- Taxonomic Editor: Bulk editor
Feature request for: filter for "created by"
This would allow to find systematic ... - 02:38 PM feature request #8595 (Closed): Create description detail page
- All the rest seems to be fixed or even improved in the meanwhile. So I close this ticket.
- 02:37 PM feature request #8595: Create description detail page
- Geklonte SpecimenDescription brauchen Datum und Dataset im Titel => this is not yet fully implemented. Created new ti...
- 02:36 PM feature request #8967 (New): Improve label for cloned descriptions
- ... and maybe also other descriptions.
From #8595: "Geklonte SpecimenDescription brauchen Datum und Dataset im Tit... - 02:29 PM bug #8779 (Closed): Description page: use render_taxon_or_name() for creating the page and description title and taxon links
- Looks like this is fully fixed. Norbert, please reopen if there is an open issue with naming of taxa and names on the...
- 02:27 PM bug #8739 (Closed): remaining issues for description detail page
- This all seems to be implemented or moved to other tickets. Norbert, please reopen if you think some issues are not f...
- 02:13 PM bug #8966 (New): Name page: show types of related names as running text with the related name
- Example names:
* Navicula capitata Ehrenb (https://www.phycobank.org/cdm_dataportal/name/6b6539cd-9cb8-4748-9130-a... - 12:51 PM feature request #8758 (Closed): Aggregated Descriptions: order states by frequency
- I checked for Rhipsalis (http://caryophyllales.org/cactaceae/cdm_dataportal/taxon/b15ec01d-b909-4143-b197-e752b6f34d5...
- 12:44 PM feature request #8803 (Closed): Add "per mm²" to measurement units
- I checked on an old DB like globis and the new value is available there, too. So I close this ticket.
- 11:43 AM feature request #8208: Allow selecting property modifiers when creating a character
- I suggest to implement this only when we realize that we really need it.
- 11:40 AM feature request #8003: [DISUCSS] Implement "Export" on sub tree of FeatureTrees
- Probably we will not manage to implement this in 5.15. We also need to discuss who should work on it and how importan...
- 11:38 AM feature request #8453: Improve performance of DescriptiveDataSet
- This is probably a major task which can not be handled in 5.15. We also need to discuss who should work on it.
- 11:35 AM feature request #7675: Make columns with default values togglable
- Can you please check how work intensiv this is?
- 11:34 AM feature request #7580 (In Progress): User wishes: CharacterMatrix
- The status of this ticket to me is unclear. There are some commits so I guess it is at least in progress.
I don't k... - 11:21 AM feature request #8529: [DISCUSS]Display of aggregated descriptions
- This ticket is very vague and maybe it is completely handleded in other tickets already.
The first part of the des... - 11:15 AM bug #8903: Remember expansion state in factual data view
- Moving to additivity milestone. But in general remembering of expansion state currently does not work correctly in th...
- 11:13 AM feature request #8775: Improve (rapid) data entry into characater matrix for categorical data
- Moving to additivity milestone
- 11:12 AM feature request #8902: Add "open in" menu to row menu in matrix editor
- moving to additivity milestone
- 11:11 AM feature request #7774: Show description source for description elements
- Moving to additivity milestone
- 11:10 AM feature request #8742: Allow deleting vocabularies
- 5.15 is considered to be an additivity milestone. Therefore I move it to this milestone.
- 10:47 AM bug #8510: Non unique object exception when creating FeatureStates
- We should check if this is still an open issue and/or if it is related to any other of the term tree editing issues
- 10:36 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Andreas Müller wrote:
> I did not review yet (editor is still building) but forgot to mention in the description tha... - 10:20 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- I did not review yet (editor is still building) but forgot to mention in the description that also removing a synonym...
- 09:57 AM bug #8959: Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Now the focus is set explicitly to the moved synonym, so the context menu should be correct. please review
- 09:44 AM bug #8959 (Resolved): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- Applied in changeset commit:taxeditor|764151afe45bda26527cd591324959cae397eb70.
- 10:16 AM task #8957 (Closed): Rename "unexpected error" to "unhandled error"
- this seems to be correct.
- 10:08 AM bug #8961 (Resolved): Using the selection dialogue for nomenclatural references removes the recently used list
- please review
- 10:05 AM Revision 6a56588d (taxeditor): fix #8962: check for disposed section
- 10:05 AM bug #8962: Handle widget is disposed after closing Supplemental Data View
- please review
- 10:04 AM bug #8962 (Resolved): Handle widget is disposed after closing Supplemental Data View
- Applied in changeset commit:taxeditor|6a56588d99aa57e6da57bad3def7b9e376cc4466.
- 09:45 AM Revision 764151af (taxeditor): fix #8959: set focus to synonym after moving synonym to other homotypic group
- 09:09 AM Revision 3580c856 (taxeditor): use copy icon for clone button in name details view
04/20/2020
- 07:14 PM bug #8965 (New): Separator missing for aggregated descriptions of higher character tree nodes
- In the aggregated descriptions freetext separators are missing in front of the text belonging to character nodes of h...
- 06:33 PM bug #8857: NonUniqueObjectException when creating new taxon
- There is a very similar case which has a secundum reference and a nomenclatural reference in common (not only authors...
- 06:32 PM Revision c2724256 (taxeditor): fix #8034: calling nomenclatural ref selection dialog should not delete last selected reference list
- 06:30 PM Revision 2d440e1c (cdmlib): ref #8857 NonUniqueObjectException test for new taxon with shared reference
- 06:13 PM bug #8963: Selection dialogues should be modal
- Don't know why the shell style was set to SWT.DIALOG_TRIM. This is fixed now.
- 06:10 PM bug #8963 (Resolved): Selection dialogues should be modal
- Applied in changeset commit:taxeditor|5893c96f9e864a5206112771215a6f699ffa7977.
- 04:18 PM bug #8963: Selection dialogues should be modal
- NaK:
ich mache folgendes
- sec ref. für das akzeptierte Taxon ändern. Das Details view zeigt die neue sec. ref. ric... - 04:15 PM bug #8963 (Closed): Selection dialogues should be modal
- Currently it is possible to edit data in other parts of the TaxEditor if a selection dialogue is opened. This may lea...
- 06:10 PM Revision 5893c96f (taxeditor): fix #8963: selection dialogs should be modal
- 05:28 PM bug #8964: Improve label for homonym relationships
- ~~~ SQL
UPDATE DefinedTermBase
SET titleCache = 'is later homonym of'
WHERE uuid = '80f06f65-58e0-4209-b811-cb4... - 05:22 PM bug #8964 (In Progress): Improve label for homonym relationships
- Implemented in csv files.
Still need to implement update script for 4 Representations and 2 DefinedTermBase.titleC... - 05:19 PM bug #8964 (Closed): Improve label for homonym relationships
- WGB:
Name relationships:
is later/earlier homonym “for” => “of”
===
Needed for "is later/earlier homonym for"... - 05:20 PM Revision 469fa283 (cdmlib): ref #8964 later homonym for => of (changed in csv files)
- 03:06 PM bug #8962 (Closed): Handle widget is disposed after closing Supplemental Data View
- WGB:
nach Schließen des Supplemental Data views.
Vorher: Synonym Wormia von Ancistrocladus Fokus auf Name gesetzt.... - 02:56 PM bug #8961 (Closed): Using the selection dialogue for nomenclatural references removes the recently used list
- Selecting a nomenclatural reference for a TaxonName seems to delete the list of recently used references.
WGB:
We... - 12:25 PM feature request #8960 (New): Use explicit icon for accepted taxa being basionyms
- Accepted taxa can now be flagged as basionyms in their homotypical group. But there is no icon yet that shows that th...
- 12:16 PM bug #8959 (Closed): Moving a synonym to the homotypical group of the accepted taxon opens the context menu of the accepted taxon
- To reproduce:
* open a taxon which has a heterotypic synonym
* move this synonym to the homotypic group of the ac... - 11:04 AM bug #4299: Show error when permission is denied ...
- I think I chose this title because my concern was that permission errors are not shown in general (or at least at mul...
- 10:21 AM bug #4299: Show error when permission is denied ...
- I think we should change the subject of this issue to better reflect the details of this task.
Suggestion: *Adapt ... - 10:46 AM feature request #6335: Providing the admin email for each server installation
- I am changing the subject to avoid confusion of server installation with cdm instance
- 10:22 AM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- WGB:
ich verbringe ja einen beträchtlichen Teil meiner Zeit mit dem Aufräumen von nomenklatorischen und bibliographi... - 10:22 AM feature request #8958 (Closed): Add publication year, inReference (journal), and URI to reference bulk editor
- 10:00 AM feature request #7432: Show default login only if the account has not been changed
- Andreas Müller wrote:
> Another solution could be to show the default password only if the host is localhost or if t...
04/17/2020
- 11:50 PM Revision 39c62a4a (cdmlib): cleanup
- 11:50 PM Revision 4e0742ba (cdmlib): ref #8857 adapt test for non-unique object exception
- 08:12 PM bug #8857 (In Progress): NonUniqueObjectException when creating new taxon
- I created a test for the issue: TaxonNodeServiceImplTest.testSaveNewTaxonNode()
The problem seems to be a principa... - 12:18 PM bug #8857: NonUniqueObjectException when creating new taxon
- The error occurred again:
The screenshot shows that the new taxon is using an author whic... - 08:03 PM Revision e2ac6eb9 (cdmlib): cleanup
- 08:03 PM Revision a99c387f (cdmlib): ref #8857 test for non-unique object exception
- 07:59 PM feature request #8238 (Feedback): Allow interoperability between term trees
- should we split this ticket?
- 07:58 PM feature request #7981 (Feedback): Add configuration UI for matrix description aggregation
- 05:42 PM Revision 24e1f8d3 (cdmlib): cleanup
- 05:39 PM Revision 53bbff6f (cdmlib): cleanup RedmineRegistrationMessageServiceTest.xml
- 12:45 PM Revision 0fe66ef7 (cdmlib): cleanup
- 12:06 PM Revision 3720ed7b (taxeditor): cleanup
- 12:06 PM Revision 1d255789 (taxeditor): fix #8957 Replace "Unexpected error" by "Error" in title
- 11:49 AM task #8957: Rename "unexpected error" to "unhandled error"
- I replaced now "This is an unexpected error" by "An error occurred". Please review.
- 11:48 AM task #8957 (Resolved): Rename "unexpected error" to "unhandled error"
- Applied in changeset commit:taxeditor|7b67db23d063fe89224e44874055487cdaff85b7.
- 11:35 AM task #8957: Rename "unexpected error" to "unhandled error"
- WGB:
ja, von mir aus – aber eigentlich sind das Aussagen, die nicht das USER interface sondern das developer interfa... - 11:08 AM task #8957: Rename "unexpected error" to "unhandled error"
- WGB:
„Unexpected Error“ und „This is an unexpected Error“ entbehrt nicht einer gewissen Komik, ich nehme an, die ist... - 11:07 AM task #8957 (Closed): Rename "unexpected error" to "unhandled error"
- 11:48 AM Revision 7b67db23 (taxeditor): fix #8957 Replace "This is an unexpected error" by "An error occurred"
- 11:44 AM Revision fb74fafe (taxeditor): cleanup
- 11:01 AM feature request #7432: Show default login only if the account has not been changed
- WGB:
Und im Login-Dialog stolpere ich jedes mal über die Angabe des Defaults (admin, ...) – die ist doch klar unsi... - 11:00 AM feature request #7432: Show default login only if the account has not been changed
- Another solution could be to show the default password only if the host is localhost or if the instance is "localhost...
- 12:39 AM task #2342: Open issues for DwC-A export
- Maybe still not the correct milestone but still better than the old one.
- 12:11 AM feature request #4298 (Feedback): refresh views after changing rights
- Is this still an open issue?
If yes, please let discuss which milestone to put it to, as the old milestone is closed. - 12:07 AM feature request #3095 (Feedback): protect taxa and nodes
- Please check what are the issues that are still open. Maybe split ticket afterwards into open and closed issues.
- 12:05 AM feature request #3097 (Feedback): disable editors if a user has insufficient grants for a taxon or taxon node.
- I am not sure if I understand what is meant here with "enabled".
Currently it seems possible to open a taxon but not...
04/16/2020
- 11:42 PM Revision 0ebc7378 (taxeditor): cleanup
- 11:41 PM Revision 142a6b70 (taxeditor): ref #4306 remove camel case for GrantedAuthority labels
- 11:35 PM Revision 84527493 (taxeditor): cleanup
- 06:45 PM bug #4300 (Feedback): Authority form does not work under Windows
- To me it looks like this ticket can be closed as worksforme even if the authority form is still not working very well...
- 06:40 PM bug #4299: Show error when permission is denied ...
- Also entering the New->Taxon dialog should not be possible as the dialog is fully disabled in this case anyway (but o...
- 06:37 PM bug #4299: Show error when permission is denied ...
- I move this to current milestone as we have more and more DBs with limited rights and therefore this issue becomes mo...
- 06:34 PM bug #8956 (New): Close views and editors only after successful login
- Currently open editors and views are closed even if a login as another user is not successful.
This is not necessary... - 06:25 PM bug #7844 (Closed): LoginDialog freezes Taxeditor if no connection can be established
- With the current timeouts and connection error handling this ticket seems to be fully fixed.
- 06:03 PM feature request #6429 (Feedback): Reconstruct Admin Preferences
- To me it looks like this was fixed long time ago. So we could close the ticket as worksforme remove target version. P...
- 05:59 PM feature request #6327 (Duplicate): Providing the admin email for each server instance somehow
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Do we have an idea who the admin actually is?
> > Is it the ... - 03:49 PM bug #8955 (New): After saving a taxon the taxon navigator scrolls the taxon to the bottom
- NaK:
Hat man ein Taxon-Fenster geschlossen, verschiebt sich der Baum so, dass dieses Taxon ganz unten in der Ansic... - 03:34 PM bug #8954 (Closed): Details and Supplemental Data View do not save the expansion state of sections again
- The regression described in #8260 occurs again for me. Details view and supplemental data view and maybe others do no...
- 03:07 PM bug #8953 (Resolved): Focus not correctly evaluated for details view when switching between names
- NaK:
Problem mit dem Details-View. Sobald man ein Taxon geöffnet hat, und auf eines der Synonyme in der Liste klickt...
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