Activity
From 03/18/2020 to 04/16/2020
04/16/2020
- 06:45 PM bug #4300 (Feedback): Authority form does not work under Windows
- To me it looks like this ticket can be closed as worksforme even if the authority form is still not working very well...
- 06:40 PM bug #4299: Show error when permission is denied ...
- Also entering the New->Taxon dialog should not be possible as the dialog is fully disabled in this case anyway (but o...
- 06:37 PM bug #4299: Show error when permission is denied ...
- I move this to current milestone as we have more and more DBs with limited rights and therefore this issue becomes mo...
- 06:34 PM bug #8956 (New): Close views and editors only after successful login
- Currently open editors and views are closed even if a login as another user is not successful.
This is not necessary... - 06:25 PM bug #7844 (Closed): LoginDialog freezes Taxeditor if no connection can be established
- With the current timeouts and connection error handling this ticket seems to be fully fixed.
- 06:03 PM feature request #6429 (Feedback): Reconstruct Admin Preferences
- To me it looks like this was fixed long time ago. So we could close the ticket as worksforme remove target version. P...
- 05:59 PM feature request #6327 (Duplicate): Providing the admin email for each server instance somehow
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Do we have an idea who the admin actually is?
> > Is it the ... - 03:49 PM bug #8955 (New): After saving a taxon the taxon navigator scrolls the taxon to the bottom
- NaK:
Hat man ein Taxon-Fenster geschlossen, verschiebt sich der Baum so, dass dieses Taxon ganz unten in der Ansic... - 03:34 PM bug #8954 (Closed): Details and Supplemental Data View do not save the expansion state of sections again
- The regression described in #8260 occurs again for me. Details view and supplemental data view and maybe others do no...
- 03:07 PM bug #8953 (In Progress): Focus not correctly evaluated for details view when switching between names
- NaK:
Problem mit dem Details-View. Sobald man ein Taxon geöffnet hat, und auf eines der Synonyme in der Liste klickt...
04/09/2020
- 02:02 PM task #8952 (New): Change data set to dataset
- It has been decide to use dataset and not data set as label for data sets throughout the platform.
All labels and ... - 02:00 PM bug #8951 (New): Do not show Open in ... menu in factual data view if no record is selected
- Maybe this is also relevant for other views/editors
 - 01:09 PM task #8934 (Closed): Import new FoG status data
- 01:07 PM task #8934 (Resolved): Import new FoG status data
- Applied in changeset commit:cdmlib-apps|44845558921aa07d8c89dfbeebf0ac7dab6c938d.
- 01:05 PM feature request #8725: Add abbreviation to namedArea text field in distribution details view
- Andreas Müller wrote:
> Andreas Müller wrote:
> > The preference should be moved from Factual Data to UI->Distribut...
04/08/2020
- 09:31 PM feature request #8950 (New): Allow creating new facts dataset and new fact in one step
- Adding a fact to a taxon which does not yet have facts takes time as one first needs to create a factual dataset (des...
- 07:12 PM bug #8949 (New): Open new fact in factual data view and set focus to main field in details view.
- ~~Currently when choosing creating a new fact via "new"->"feature" only the feature is shown and gets the focus in th...
- 06:24 PM bug #8815: Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Is this ticket fully fixed and for review?
>
> yes, I wrot... - 06:11 PM bug #8815 (Closed): Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao
- this seems to work, as there are no problems in the editor and the code looks fine as well.
- 06:02 PM bug #8815: Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao
- Andreas Müller wrote:
> Is this ticket fully fixed and for review?
yes, I wrote this already in comment 7
- 05:00 PM bug #8815 (Resolved): Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao
- Is this ticket fully fixed and for review?
- 05:57 PM feature request #8895 (Closed): Specimen page: show specimen description as continuous text
* Source link like for taxon page descriptive data texts --> see #8948
* correct handling of multiple "exact value...- 03:26 PM feature request #8895 (Feedback): Specimen page: show specimen description as continuous text
- Open issues:
* Source link like for taxon page descriptive data texts
* correct handling of multiple "exact values" - 11:50 AM feature request #8895 (Resolved): Specimen page: show specimen description as continuous text
- das war ein Problem mit dem update des Codes durch Jenkins auf dem Test Server,
jetzt ist alles up to date - 11:38 AM feature request #8895 (Feedback): Specimen page: show specimen description as continuous text
- I tried to test but on http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/occurrence/426e...
- 05:55 PM feature request #8947: support multiple values of statistical value type ExactValue
- Set to critical because the current implementation only shows parts of the data which may be misleading.
- 02:59 PM feature request #8947 (New): support multiple values of statistical value type ExactValue
- ... kann eine Liste sein, also mehrere Exact Values, die dann wohl semikolon-separiert sein sollten, um Verwechslunge...
- 05:48 PM feature request #8948 (New): Specimen page: specimen description link to description details page
- the specimen description in the Specimen page should link to the description details page just like in the taxon page
- 05:02 PM feature request #7981: Add configuration UI for matrix description aggregation
- Generally this ticket is implemented I guess but there are a couple of open issues. I think we should split the ticket?
- 02:44 PM bug #8905 (Closed): Description Handling in ABCD import
- This seems to work as expected now (though I still am not convinced that having the option to merge distributions if ...
- 01:17 PM bug #8905: Description Handling in ABCD import
- For testing import:
File -> Import -> Specimen -> Specimen Online -> enter "bgbm*Herbar" in text field for biocase p... - 11:32 AM bug #8905 (Feedback): Description Handling in ABCD import
- Can you please add example data (webservice, example specimen) for reviewing?
- 02:18 PM feature request #8725: Add abbreviation to namedArea text field in distribution details view
- Revision 20fd2b76 says "move also admin preference" but I can't find this preference in the admin preferences.
- 02:15 PM feature request #8725 (Feedback): Add abbreviation to namedArea text field in distribution details view
- Andreas Müller wrote:
> The preference should be moved from Factual Data to UI->Distribution Details View
Now it ... - 12:27 PM feature request #8725 (Resolved): Add abbreviation to namedArea text field in distribution details view
- Applied in changeset commit:taxeditor|4bff1cd7132b34fa100aaff28408278dc6e585a5.
- 11:23 AM feature request #8725: Add abbreviation to namedArea text field in distribution details view
- The label should be changed to Show id in vocabulary in **area** textfield.
"Areal" in German. - 11:18 AM feature request #8725 (Feedback): Add abbreviation to namedArea text field in distribution details view
- The preference should be moved from Factual Data to UI->Distribution Details View
- 02:12 PM feature request #8906 (Closed): Refactor DNA Sample details view
- Works as expected
- 12:57 PM feature request #8906 (Resolved): Refactor DNA Sample details view
- please review
- 12:56 PM feature request #8906: Refactor DNA Sample details view
- Andreas Müller wrote:
> Katja Luther wrote:
>
> > But we should create a new ticket to think about refactoring th... - 12:52 PM feature request #8906: Refactor DNA Sample details view
- Andreas Müller wrote:
> As also commented in #8910 the show determinations only for field units preference does not ... - 12:52 PM feature request #8906 (Feedback): Refactor DNA Sample details view
- Andreas Müller wrote:
> Determinations work now can we still add "Accession number" below "Barcode" as this is the d... - 12:50 PM feature request #8906 (Resolved): Refactor DNA Sample details view
- Applied in changeset commit:taxeditor|c70ef402e57300c8b5f597afbb6a747ce78ccd3c.
- 11:30 AM feature request #8906: Refactor DNA Sample details view
- As also commented in #8910 the show determinations only for field units preference does not yet work for the new DNA ...
- 11:24 AM feature request #8906 (Feedback): Refactor DNA Sample details view
- Determinations work now can we still add "Accession number" below "Barcode" as this is the default id field for impor...
- 09:50 AM feature request #8906: Refactor DNA Sample details view
- For reviewing: is there anything else that is new or changed in the DNA details view beside determinations?
- 09:48 AM feature request #8906: Refactor DNA Sample details view
- Katja Luther wrote:
> But we should create a new ticket to think about refactoring the details view of specimen in... - 02:02 PM bug #8910 (Closed): Correct handling of preference for determinations
- Andreas Müller wrote:
> This works now but only for the "new" determinations in DNA Details View it does not yet wor... - 11:29 AM bug #8910: Correct handling of preference for determinations
- This works now but only for the "new" determinations in DNA Details View it does not yet work.
- 11:28 AM bug #8910 (Feedback): Correct handling of preference for determinations
- Katja Luther wrote:
> the problems are solved, they where caused by an empty combo box
Yes the above problem is s... - 09:14 AM bug #8910 (Resolved): Correct handling of preference for determinations
- the problems are solved, they where caused by an empty combo box
- 02:00 PM bug #8552 (Closed): Avoid DB call for matrix state DB preferences
- 12:55 PM bug #8946 (New): Refactor DerivedUnit Details view
- For all details views for the derived unit a derived unit facade is created, but depending on the selection providing...
- 12:53 PM feature request #8945 (Resolved): support statistical value type ExactValue (29736701-58c4-48b3-a9d7-41c74140cac7)
- this is solved now, even if in a preliminar way.
- 12:02 PM feature request #8945: support statistical value type ExactValue (29736701-58c4-48b3-a9d7-41c74140cac7)
- needs to be fixed for 5.13 as the error is visible in the portal even with specimen
descriptions as running text - 11:02 AM feature request #8945 (Resolved): support statistical value type ExactValue (29736701-58c4-48b3-a9d7-41c74140cac7)
- Unsupported statistical value type: 29736701-58c4-48b3-a9d7-41c74140cac7
Should be quick to fix!!!!
e.g.: http:... - 11:06 AM bug #8932 (In Progress): Swagger does not distinguish overloaded controller endpoints
- `enableUrlTemplating(true)` causes problems with swagger-ui.
we need to switch to a swagger ui version which suppo... - 10:41 AM bug #8428 (Closed): NPE in ClassificationServiceImpl.loadTreeBranchToTaxon()
- The NPE is no longer reproducible:
http://test.e-taxonomy.eu/cdmserver/euromed/portal/classification/314a68f9-8449... - 10:36 AM feature request #980 (New): Links to relevant external website(s) in taxon pages
- 07:44 AM bug #8944: Handle org.springframework.security.authentication.DisabledException explicitely
- I changed the subject to describe the task closer - hope this is in your sense Andreas.
- 07:39 AM bug #8911 (Closed): LazyInitializationException (LIE) in portal/description/{uuid}
- there are no other suspect spots.
04/07/2020
- 11:48 PM feature request #8906: Refactor DNA Sample details view
- See #8910#note-5 for a possible regression
- 11:47 PM bug #8910 (Feedback): Correct handling of preference for determinations
- I get an exception when choosing an ordinary specimen (derived unit) in specimen tree editor
~~~
last remote meth... - 06:44 PM bug #8911: LazyInitializationException (LIE) in portal/description/{uuid}
- Andreas Müller wrote:
> The above link already works on production. Has this issue been hotfixed already?
upps, n... - 06:35 PM bug #8911 (Feedback): LazyInitializationException (LIE) in portal/description/{uuid}
- The above link already works on production. Has this issue been hotfixed already?
- 06:32 PM bug #8913 (Closed): InInVoc not showing up anymore in TermEditor
- Works as expected
- 06:21 PM bug #8904 (Closed): Show "cloned" icon in factual data view
- Works as expected
- 06:15 PM bug #8917 (Closed): NPE when opening Acacia in Name bulk editor (from search)
- works as expected
- 06:01 PM feature request #8926 (Closed): Remove 'expired' flags in users details
- correct
- 05:58 PM bug #8944 (New): Handle org.springframework.security.authentication.DisabledException explicitely
- If one tries to login as an disabled user an "unexpected error" is thrown.
But a disabled user should not be an un... - 05:53 PM bug #8938 (Closed): ProposalProvider in NameRelationshiptype combo does not work as expected
- Seems to work as expected
- 05:50 PM bug #8943 (Closed): Term Preferences are not correctly handled in combo boxes
- Seems to work
- 03:43 PM bug #8943: Term Preferences are not correctly handled in combo boxes
- now the handling of term preferences should work like expected.Please review.
- 03:39 PM bug #8943 (Resolved): Term Preferences are not correctly handled in combo boxes
- Applied in changeset commit:taxeditor|33c10482605414dedddd643befbdff7559897b9e.
- 03:38 PM bug #8943 (Closed): Term Preferences are not correctly handled in combo boxes
- mail WB:
Hallo,
ich hatte mich da schon vor einiger Zeit dran versucht, war aber wieder abgekommen: Wie kann man ... - 05:41 PM bug #8942 (Closed): Exception when try to get text of TextualTypeDesignation with language which is not available
- Correct
- 05:35 PM bug #8940 (Closed): The export wizard does not remember last selected folder
- Seems to work as expected
- 05:29 PM bug #8939: Exception when opening Distribution Editor because of missing Preference
- But handling of defaults (as implemented for most other preferences) is still not missing. This is mentioned in #8047...
- 05:18 PM bug #8939 (Closed): Exception when opening Distribution Editor because of missing Preference
- Seems to work as expected
04/06/2020
- 12:15 PM bug #8942: Exception when try to get text of TextualTypeDesignation with language which is not available
- please review.
- 12:14 PM bug #8942 (Resolved): Exception when try to get text of TextualTypeDesignation with language which is not available
- Applied in changeset commit:cdmlib|a2bd245128ad90fe14d5790ef26ef031176522a5.
- 12:09 PM bug #8942 (Closed): Exception when try to get text of TextualTypeDesignation with language which is not available
~~~
java.lang.NullPointerException
at eu.etaxonomy.cdm.model.name.TextualTypeDesignation.getText(TextualTypeDe...- 11:30 AM bug #8941: Exception when opening taxon from taxonnavigator by double click
- this exception is caused in the eclipse method showPart, maybe the part is not available.
- 11:28 AM bug #8941 (New): Exception when opening taxon from taxonnavigator by double click
mail WB:
Hallo,
parallel läuft ein Export, vielleicht zu viel auf einmal?
Passieren tut anschließend nichts.
H...- 10:50 AM bug #8939: Exception when opening Distribution Editor because of missing Preference
- please review
- 10:13 AM bug #8939 (Resolved): Exception when opening Distribution Editor because of missing Preference
- Applied in changeset commit:taxeditor|c6df97c52c7252b0fdd708029155ddfca164ffaf.
- 09:49 AM bug #8939 (In Progress): Exception when opening Distribution Editor because of missing Preference
- 09:48 AM bug #8939 (Closed): Exception when opening Distribution Editor because of missing Preference
- Dear Andreas,
I would like to report an error, when I try "Opening in..." "Distribution editor", I get the message... - 10:49 AM bug #8940: The export wizard does not remember last selected folder
- please review
- 10:48 AM bug #8940 (Resolved): The export wizard does not remember last selected folder
- Applied in changeset commit:taxeditor|7e48c2ec9b8eb389cc9659c4f62621c9b078dd68.
- 10:47 AM bug #8940 (Closed): The export wizard does not remember last selected folder
- When opening the export wizard the last selected export folder was shown in the text field, this is not the case anym...
- 10:06 AM feature request #8931: Taxeditor supports https
- There are no problems connecting the production server api.cybertaxonomy.org:443
So the problem above seems rather... - 09:23 AM feature request #8931: Taxeditor supports https
- Atlassian provides detaild information on this problem at https://confluence.atlassian.com/kb/unable-to-connect-to-ss...
- 08:29 AM feature request #8931: Taxeditor supports https
- Connecting the test server (test.e-taxonomy.eu) via https fails with:
~~~
....
Caused by: sun.security.validator... - 09:38 AM bug #8938: ProposalProvider in NameRelationshiptype combo does not work as expected
- please review
- 09:27 AM bug #8938 (Resolved): ProposalProvider in NameRelationshiptype combo does not work as expected
- Applied in changeset commit:taxeditor|e2561ea7d4c417afe58d8bebf60c28146abb3f1c.
- 09:13 AM bug #8938 (Closed): ProposalProvider in NameRelationshiptype combo does not work as expected
- The ProposalProvider does not set the selection for the combo element, therefore the finish button is not enabled.
- 08:43 AM feature request #8926 (Resolved): Remove 'expired' flags in users details
04/03/2020
- 04:00 PM bug #8937 (New): Missing synonymy for certain synonymy tab state in portal configuration
- If "Tabbed taxon page" is switched off while "Synonymy as tab" is switched on the tab is remembered as switched on:
... - 03:29 PM bug #8936 (Closed): Improve default distribution formatting
- Currently the default is
* Level 0-Label suffix: ":"
* Level 1-Item group prefix: ","
This result in Text like... - 02:29 PM bug #8935: Specimen Table: improved and more complete details row for character data
- Hallo,
"... Ich denke es gibt auch keinen Grund nur die Daten der PreferredSpecimen bzw. der Derivate anzuze... - 02:29 PM bug #8935: Specimen Table: improved and more complete details row for character data
- Hallo,
vielen Dank für die Info, da hatte ich mir wohl einiges falsch gemerkt.
Wenn ich es richtig ve... - 02:28 PM bug #8935: Specimen Table: improved and more complete details row for character data
- Hallo,
ein gutes Beispiel ist Campanula aucheri im Campanula-Portal:
http://campanula.e-taxonomy.net/... - 02:28 PM bug #8935 (New): Specimen Table: improved and more complete details row for character data
**TODO:**
* show all units (FieldUnit + all Derived Units) by the short label
* if a unit has more than one s...- 02:24 PM feature request #4383: multiple issues with de-duplication of references in bibliography
- another case of failing deduplication:
http://portal.cybertaxonomy.org/flora-de-la-republica-de-cuba/cdm_dataporta... - 12:59 PM task #8934 (Closed): Import new FoG status data
- 12:42 PM bug #8916 (Closed): ConcurrentModificationException in CdmFormFactory.destroyElement()
- I could not reproduce the exception anymore and the solution seems to be correct.
- 12:21 PM bug #8916: ConcurrentModificationException in CdmFormFactory.destroyElement()
- The above fix can not work because the remove is not called on the iterator. I changed the code in a way that a tempo...
- 12:41 PM task #8928: Swap menu entries for specimen bulk editors
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > This I expect to be a no-brainer there... - 12:40 PM task #8928: Swap menu entries for specimen bulk editors
- Katja Luther wrote:
> Andreas Müller wrote:
> > This I expect to be a no-brainer therefore I moved it to 5.14. If n... - 11:12 AM task #8928: Swap menu entries for specimen bulk editors
- Andreas Müller wrote:
> This I expect to be a no-brainer therefore I moved it to 5.14. If not please move further.
... - 12:35 PM feature request #8725: Add abbreviation to namedArea text field in distribution details view
- please review
- 12:32 PM feature request #8725 (Resolved): Add abbreviation to namedArea text field in distribution details view
- Applied in changeset commit:taxeditor|de0fd82683fcaa892d6e6b55457d2088f9c31315.
- 12:27 PM task #8886 (Closed): Import Lichenes Genera
- Generally this is fixed. Details will be discussed via Mail.
- 12:26 PM bug #8918 (Closed): Add "set as basionym" to accepted taxon
- Seems to work as expected
- 12:24 PM bug #8919 (Closed): Shorten label for "Reference Detail"
- fixed and looks better as there is more space for the reference title now
- 12:04 PM bug #8933: Registration UI: Views must not persist empty annotations
- We should also cleanup data once this is fixed.
- 11:45 AM bug #8933 (New): Registration UI: Views must not persist empty annotations
- ich sehe gerade, dass es in Phycobank jede Menge leere Annotations gibt, also welche bei denen der Text leer ist. Das...
- 11:46 AM bug #8932 (Closed): Swagger does not distinguish overloaded controller endpoints
- fixed
- 11:46 AM bug #8932 (Resolved): Swagger does not distinguish overloaded controller endpoints
- Applied in changeset commit:cdmlib|c916a82aeea2d702daa12cd607f5bd5acc25a57f.
- 11:36 AM bug #8932 (In Progress): Swagger does not distinguish overloaded controller endpoints
- the BaseListController defines three mappings for /{type}/
* doList(Integer, Integer, Class<T>, HttpServletRequest... - 10:59 AM bug #8927 (Closed): Fix isAdmin() method in LoginManager
- 10:53 AM feature request #8930: Publishable objects should show icon if they are unpublished
- mail WB:
In diesem Zusammenhang wollte ich auch anregen, die als doubtful markierten Taxa auch im Navigator mit de... - 10:17 AM feature request #8930 (Closed): Publishable objects should show icon if they are unpublished
- To avoid that someone accidentally switches the publish flag of and generally to immediately now that a taxon is not ...
- 10:36 AM feature request #8931 (Closed): Taxeditor supports https
- The Taxeditor seems not able to connect cdm instances via https.
With this configuration:
~~~json
{
"name" ... - 09:12 AM bug #8925 (Closed): Users with ROLE_USER_MANAGER must be able to change any user password
- added the userHelper() method, so the ticket can be closed.
- 09:11 AM bug #8925 (Resolved): Users with ROLE_USER_MANAGER must be able to change any user password
- Applied in changeset commit:taxeditor|b43aa78568358b5022da911216fe5013783256b1.
04/02/2020
- 11:43 PM feature request #8929 (New): Add "open folder" button to file/folder based exports
- e.g. for DwC-A export and CDMLight but maybe also for other exports.
The button should appear on the result dialo... - 11:24 PM task #8928: Swap menu entries for specimen bulk editors
- This I expect to be a no-brainer therefore I moved it to 5.14. If not please move further.
- 11:23 PM task #8928 (Closed): Swap menu entries for specimen bulk editors
- AM:
Können wir die Specimen-Einträge im Bulk-Editor Menü tauschen. Ich denke Specimen(Tree) ist der bei weitem meh... - 11:16 PM feature request #8891 (Closed): Add categorical and quantiative data to DwC-A
- Constantia (FoG) tested the new implementation and told me it worked as expected for her. So I close this ticket as t...
- 04:45 PM bug #8925 (Feedback): Users with ROLE_USER_MANAGER must be able to change any user password
- I tested the functionality and this works now as expected. So this ticket can be closed apart from the above suggestion.
- 04:31 PM bug #8925: Users with ROLE_USER_MANAGER must be able to change any user password
- please create an access method like:
~~~java
private UserHelper userHelper() {
if (userHelper == null){... - 03:38 PM bug #8925: Users with ROLE_USER_MANAGER must be able to change any user password
- please review
- 12:05 PM bug #8925 (Resolved): Users with ROLE_USER_MANAGER must be able to change any user password
- Applied in changeset commit:taxeditor|bfedf5f3d8e57c764333f355c09444dee9292ab5.
- 10:53 AM bug #8925 (Closed): Users with ROLE_USER_MANAGER must be able to change any user password
- For users with ROLE_USER_MANAGER the button in the User details view to change a users password must be generally ena...
- 04:15 PM bug #8815: Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao
- Hi Katja, I reverted the return types again from UuidAndTitleCache to TaxonNodeDto
Please review. - 04:12 PM task #8834 (Closed): use TaxonNodeDto instead of UuidAndTitleCache
- done.
- 02:44 PM task #8886 (Resolved): Import Lichenes Genera
- Applied in changeset commit:cdmlib-apps|1773366920844ffb75b8ef5a21e2e8e778d0e107.
- 12:05 PM bug #8927 (Resolved): Fix isAdmin() method in LoginManager
- Applied in changeset commit:taxeditor|bfedf5f3d8e57c764333f355c09444dee9292ab5.
- 12:03 PM bug #8927 (Closed): Fix isAdmin() method in LoginManager
- The isAdmin() method uses only the name of the user to check whether the user is admin or not, but should use the rol...
- 11:01 AM feature request #8926 (Closed): Remove 'expired' flags in users details
- The fields 'Account Non Expired', 'Account locked', 'Credentials non Expired' are not used yet, so they should not be...
- 09:38 AM bug #8916: ConcurrentModificationException in CdmFormFactory.destroyElement()
- Avoid the ConcurrentModificationException by using an iterator for iterating over the elements of a set to destroy th...
- 09:22 AM bug #8916 (Resolved): ConcurrentModificationException in CdmFormFactory.destroyElement()
- Applied in changeset commit:taxeditor|002ea91bea2170b2f7307f8c7bf791e7c6ab28e0.
04/01/2020
- 03:13 PM feature request #8895: Specimen page: show specimen description as continuous text
- Andreas Müller wrote:
> Is there a link on test for reviewing? Then maybe also Norbert can have a look if it looks a... - 03:01 PM feature request #8895 (Resolved): Specimen page: show specimen description as continuous text
- Is there a link on test for reviewing? Then maybe also Norbert can have a look if it looks as expected.
- 02:39 PM feature request #8895 (Closed): Specimen page: show specimen description as continuous text
- done
- 02:39 PM feature request #8895 (Resolved): Specimen page: show specimen description as continuous text
- Applied in changeset commit:cdm-dataportal|2527a83cee421e06ea133960964442d2fd19905a.
- 02:05 PM feature request #8895 (In Progress): Specimen page: show specimen description as continuous text
- 02:50 PM bug #8923 (Duplicate): NullPointerException (NPE) after attempt to save invalid Group name
- This duplicates #7699
- 02:11 PM bug #8923: NullPointerException (NPE) after attempt to save invalid Group name
- Is this easy to fix? Otherwise move to next milestone.
- 12:50 PM bug #8923 (Duplicate): NullPointerException (NPE) after attempt to save invalid Group name
- Group editor:
* Change exiting Group name to invalid name (add whitespace character)
* Save --> Error due to in... - 01:55 PM bug #8904 (Resolved): Show "cloned" icon in factual data view
- Applied in changeset commit:taxeditor|f6524e305046c69ff209143af2c4a12d36bad975.
- 01:52 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- I did some research but it seems to be a little bit more complex because this needs to be implemented by a mouseListe...
- 01:30 PM bug #7376: doubtful taxa not easy to find
- Vielleicht sollten wir überlegen ob die hier verwendete Suche tatsächlich die Richtige ist. Vermutlich wird hier doch...
- 01:23 PM bug #8924 (New): Select dialog for GrantedAuthorities is unusable with many GAs in the DB
- In the phycobank db the select dialog for GrantedAuthorities completely blocks the whole editor.
- 11:39 AM feature request #8906: Refactor DNA Sample details view
- Applied in changeset commit:taxeditor|21938b114f742509677d4d883f91f0883dc70683.
- 11:34 AM feature request #8906 (Resolved): Refactor DNA Sample details view
- Now, the dna sample details view is handled analogue to the other derived units. So the determination can be shown, n...
- 11:14 AM bug #8428 (Resolved): NPE in ClassificationServiceImpl.loadTreeBranchToTaxon()
- Applied in changeset commit:cdmlib|380b0e353b61b451d378c7d4341c111a11534c32.
- 11:13 AM bug #8428: NPE in ClassificationServiceImpl.loadTreeBranchToTaxon()
- observed again :
~~~
[algaterra] 2020-03-29 10:00:50,924 INFO [qtp1018547642-5078] [eu.etaxonomy.cdm.remote.contr... - 10:57 AM task #8379: Review strange specimen implementations
- Andreas Müller wrote:
> I think we decided to move this issue to AK. Please correct me if wrong.
Yes, exactly. Bu... - 10:47 AM task #8379: Review strange specimen implementations
- I think we decided to move this issue to AK. Please correct me if wrong.
Please also decide which milestone it sho...
03/31/2020
- 03:22 PM feature request #8922 (Duplicate): Make setting of sec-Reference configurable when moving synonyms.
- Currently the sec ref is automatically taken from the new accepted taxon when moving (or adding) a synonym. This is n...
- 11:25 AM bug #8917: NPE when opening Acacia in Name bulk editor (from search)
- this should be fixed, please review
- 11:24 AM bug #8917 (Resolved): NPE when opening Acacia in Name bulk editor (from search)
- Applied in changeset commit:taxeditor|163a48b01b39469cfa576645eacc98e303b9f9eb.
- 11:10 AM bug #8905 (Resolved): Description Handling in ABCD import
- 08:51 AM bug #8905: Description Handling in ABCD import
- Andreas Müller wrote:
> Katja Luther wrote:
> > The description handling is fixed now, but another problem is the t... - 08:49 AM bug #8905: Description Handling in ABCD import
- Katja Luther wrote:
> The description handling is fixed now, but another problem is the titlecache creation. After a... - 08:40 AM bug #8905: Description Handling in ABCD import
- The description handling is fixed now, but another problem is the titlecache creation. After adding a new source to t...
- 11:04 AM bug #8918: Add "set as basionym" to accepted taxon
- please review
- 11:03 AM bug #8918 (Resolved): Add "set as basionym" to accepted taxon
- Applied in changeset commit:taxeditor|2bef172d75871c83d777b56b7bc5d552f4fcea2e.
- 08:55 AM bug #8918: Add "set as basionym" to accepted taxon
- If not easy to implement please move to other milestone.
- 08:54 AM bug #8918 (Closed): Add "set as basionym" to accepted taxon
- WGB:
eine kleine Verbesserungsmöglichkeit: Bei den Synonymen der heterotypischen Gruppen kann man im NameEditor (ü... - 09:19 AM bug #8919 (Resolved): Shorten label for "Reference Detail"
- Applied in changeset commit:taxeditor|efd5530a08f475114b948ccc86cd76742ef62096.
- 08:58 AM bug #8919 (Closed): Shorten label for "Reference Detail"
- Use "Ref. Detail" instead.
In Details View for nom. ref. - 09:19 AM bug #8921 (New): Set sec for subtree not always successful
- WGB:
ich glaube, ich hatte gerade wieder den Fall, den ich schon letzte Woche bemerkt hatte.
Ich habe (in Caryoph... - 09:08 AM feature request #8920 (New): Make reference URL available in details view
- e.g. by having a button to open it or by having the label clickable and blue if an URL exists.
Note: in future the...
03/30/2020
- 03:12 PM bug #8917: NPE when opening Acacia in Name bulk editor (from search)
- Please delete the orphaned name after fixing this ticket.
- 03:06 PM bug #8917 (Closed): NPE when opening Acacia in Name bulk editor (from search)
- in FoG.
* Search for Acacia ( in FoG)
* Open the pure name (orphaned name) via context menu -> bulk editor
* =>... - 01:27 PM bug #8899 (Closed): NullPointerException (NPE) in ManifestController
- solved and tested at the example given in the description
- 01:26 PM bug #8899 (Resolved): NullPointerException (NPE) in ManifestController
- Applied in changeset commit:cdmlib|9fc7d8affc2e6c2bc83bc86dac76eec14ce5d8a3.
- 11:55 AM bug #8916: ConcurrentModificationException in CdmFormFactory.destroyElement()
- mail WB:
Hallo,
nach Save nach Ändern der sec.-Ref. im Details-View.
HG
W
~~~
last remote method : http:/... - 11:54 AM bug #8916: ConcurrentModificationException in CdmFormFactory.destroyElement()
- mail WB:
Hallo,
entfernen der Doubtful-Flag im Details View, Save -> Fehler
HG
W
~~~
last remote method : h... - 11:53 AM bug #8916 (In Progress): ConcurrentModificationException in CdmFormFactory.destroyElement()
- While updating the views sometimes a ConcurrentModificationException appears while AbstractCdmDataViewerE4.destroySec...
- 11:39 AM bug #8857: NonUniqueObjectException when creating new taxon
- another time:
mail WB:
Hallo,
beim Erstellen eines neuen Taxon aus dem Navigator heraus.
HG
W
~~~ text
...
03/27/2020
- 07:17 PM bug #8915 (Duplicate): ID in Vocabulary is not shown in term editor
- 07:15 PM bug #8915 (Duplicate): ID in Vocabulary is not shown in term editor
- The ID in VOcabulary is not shown anymore in the label of the term editor, also if the preference is set to "Show ID ...
- 05:57 PM bug #8914 (Closed): jetty 9.4.x returns error states as json which are parsed and processes by cdm_dataportal
- 05:38 PM bug #8914 (Resolved): jetty 9.4.x returns error states as json which are parsed and processes by cdm_dataportal
- Applied in changeset commit:cdm-dataportal|4e5b23aeacdb46064b71a6f76354862ff61223ee.
- 05:32 PM bug #8914: jetty 9.4.x returns error states as json which are parsed and processes by cdm_dataportal
- the original issue subject was a misinterpretation of the symptoms, the real cause is different - will change the tic...
- 05:11 PM bug #8914 (Closed): jetty 9.4.x returns error states as json which are parsed and processes by cdm_dataportal
- jetty 9.4.x returns error states as json which are parsed and processes by cdm_dataportal completely breaks with the ...
- 04:36 PM bug #8911: LazyInitializationException (LIE) in portal/description/{uuid}
- please review
- 04:23 PM bug #8911 (Resolved): LazyInitializationException (LIE) in portal/description/{uuid}
- Applied in changeset commit:cdmlib|f4bffe1d71350100bb634d183424a441c3777530.
- 10:46 AM bug #8911 (Closed): LazyInitializationException (LIE) in portal/description/{uuid}
- http://api.cybertaxonomy.org/caryophyllales_spp/portal/description/f4fc4b11-90c7-4a02-b236-2d58f5891e6e.json
~~~
... - 03:47 PM bug #8536 (Duplicate): Connect Dialog: UI elements exceed the available space
- 03:46 PM bug #7189: Taxeditor connect dialog high-dpi suport
- The same probelm exists in windows 10:
(*Windows 10 at text size 150%*) - 03:30 PM bug #8913 (Resolved): InInVoc not showing up anymore in TermEditor
- 03:29 PM bug #8913 (Closed): InInVoc not showing up anymore in TermEditor
- ... even if local preference for Term Editor is set to "show vocabulary id"
- 12:08 PM bug #8548 (Closed): ReferenceEditor: Layout problem when opening Reference editor (new journal, new book, new thesis)
- Reviewed in the released production system. No problems. Set the ticket to closed.
- 10:43 AM feature request #8906: Refactor DNA Sample details view
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > By the way the derivedUnitFacace was o... - 09:37 AM feature request #8906: Refactor DNA Sample details view
- Katja Luther wrote:
> Andreas Müller wrote:
> > By the way the derivedUnitFacace was originally meant to work with ... - 09:25 AM feature request #8906: Refactor DNA Sample details view
- Andreas Müller wrote:
> By the way the derivedUnitFacace was originally meant to work with the Specimen list editor.... - 10:21 AM bug #8910: Correct handling of preference for determinations
- Andreas Müller wrote:
> AM:
>
> Wie soll denn jetzt die genaue Semantik sein? Ich würde ja vom Namen her denken, ... - 10:11 AM bug #8910: Correct handling of preference for determinations
- AM:
Wie soll denn jetzt die genaue Semantik sein? Ich würde ja vom Namen her denken, dass die Determinations für F... - 10:10 AM bug #8910 (Resolved): Correct handling of preference for determinations
- 10:06 AM bug #8910 (Closed): Correct handling of preference for determinations
03/26/2020
- 05:19 PM task #8907 (Resolved): replace UuidAndTitleCacheTaxonComparator by type save implementation
- ticket completed.
- 11:31 AM task #8907 (Resolved): replace UuidAndTitleCacheTaxonComparator by type save implementation
- copied from #8892:
`UuidAndTitleCacheTaxonComparator` is used by different methods which pass Object array with d... - 02:32 PM feature request #8906: Refactor DNA Sample details view
- As this ticket is important for cleaning up additivity data I put it to the current milestone.
- 02:31 PM feature request #8906: Refactor DNA Sample details view
- By the way the derivedUnitFacace was originally meant to work with the Specimen list editor. For the tree editor it d...
- 12:02 PM feature request #8906: Refactor DNA Sample details view
- Especially determinations are missing there.
- 11:24 AM feature request #8906 (Closed): Refactor DNA Sample details view
- The DNA Sample details view is not handled like the other derived units by using the derivedUnitFacade.
- 01:12 PM bug #8733 (Closed): Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- Andreas Müller wrote:
> The fix seems to improve the situation a lot. If the dataset is changed the specimen list is... - 01:10 PM bug #8909: IAE (IllegalArgumentException) adding specimens to matrix editor
- **NOTE:** The exception is not handled correctly. It is neither displayed by the usual error dialog not is the stackt...
- 11:56 AM bug #8909 (New): IAE (IllegalArgumentException) adding specimens to matrix editor
this error popped up while testing for #8733
* Create new descriptive data set in caryphyllales_ssp
* addin...- 11:48 AM task #8908 (New): Clean up descriptive dataset data for Cactaceae
- Thinks to do:
* ~~remove empty DescriptionElementBase~~
* ~~remove aggregated taxon descriptions~~
* ~~remove cl... - 11:33 AM bug #8892 (Closed): Taxon search does not work for names without rank
- remaining tasks are copied to #8907, so we can close this ticket now
- 11:22 AM bug #8905 (Closed): Description Handling in ABCD import
- mail AM:
bei der Korrektur der Additivity Daten in caryo_spp fällt mir auf, dass wenn Specimen im Zuge von ABCD-DN... - 10:29 AM bug #8904 (Closed): Show "cloned" icon in factual data view
- Otherwise it is only visible in the details view that the description is a cloned description which may easily lead t...
- 10:21 AM bug #8903 (Closed): Remember expansion state in factual data view
- When removing a description from factual data view afterwards all remaining descriptions are expanded. They should be...
03/25/2020
- 07:26 PM feature request #8902 (New): Add "open in" menu to row menu in matrix editor
- If the row represents a taxon or a taxon description the according taxon should be opened in name or bulk (name or ta...
- 06:14 PM bug #8901 (Resolved): Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
- I removed aggregated taxon description via the matrix editor.
This did not remove the descriptions from their accord... - 04:27 PM bug #8900 (Closed): Layout issues with new image viewer
- see
* http://www.palmweb.org/cdm_dataportal/taxon/7c0b9529-1b28-4e1e-afda-089ac63f58a3/images#?c=&m=&s=&cv=&manif... - 02:27 PM bug #8899 (Closed): NullPointerException (NPE) in ManifestController
- Mostly happens in flora-malesiana, see below and also in
* /flora-guianas/iiif/taxon/2bc3831d-c5bd-435e-8058-8d62... - 12:21 PM bug #8784 (Closed): Deleting a specimen description not possible
- 12:16 PM bug #8784: Deleting a specimen description not possible
- Andreas Müller wrote:
> Hi Katja, I just tried to delete the "test data" as described in the description of this tic...
03/24/2020
- 05:22 PM bug #8784 (Feedback): Deleting a specimen description not possible
- Hi Katja, I just tried to delete the "test data" as described in the description of this ticket and as required in co...
- 12:16 AM bug #8790 (Closed): Update measurement units for existing quantitative data missing a unit
- I did not write a script but all data was updated on production. Updates were needed on additivity_ontology, caryo_sp...
03/23/2020
- 03:37 PM bug #8790 (Feedback): Update measurement units for existing quantitative data missing a unit
- still needs to be done
- 12:29 PM bug #8860 (Closed): Sec reference not inherited from classification anymore
- Ok, this is definitely fixed.
- 12:38 AM bug #8733: Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- The fix seems to improve the situation a lot. If the dataset is changed the specimen list is recomputed.
Not yet s...
03/22/2020
- 09:10 PM task #8047: Remaining issues in TaxDistributionEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > The number field in the preferences is still not wide enough
>
... - 09:09 PM task #8047: Remaining issues in TaxDistributionEditor
- Andreas Müller wrote:
> >Try to optimize the column width at start or after area selection. Details may be discussed.... - 09:01 PM task #8047: Remaining issues in TaxDistributionEditor
- Andreas Müller wrote:
> Currently it is not possible to enter the status in the details view (the field is disabled)...
03/21/2020
- 01:29 PM bug #8562: Remaining issues for preference pages
- Katja Luther wrote:
> Andreas Müller wrote:
>
> > The Label "Acutal status selection, the area specific selectio... - 01:10 PM bug #8562 (Feedback): Remaining issues for preference pages
- Katja Luther wrote:
> Andreas Müller wrote:
> > >The general io page should contain the „Show Export/Import Menu“ o... - 12:59 PM task #8047: Remaining issues in TaxDistributionEditor
- This ticket is now fully reviewed. Only the issues I mentioned are still open (as far as I can see).
- 12:58 PM task #8047: Remaining issues in TaxDistributionEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > >Sort status in drop down alphabetically
> >
> > This mostly seems... - 12:51 PM task #8047: Remaining issues in TaxDistributionEditor
- Andreas Müller wrote:
> >Sort status in drop down alphabetically
>
> This mostly seems to be fixed but I found 1 ... - 12:20 PM task #8047: Remaining issues in TaxDistributionEditor
- >Sort status in drop down alphabetically
~~This mostly seems to be fixed but I found 1 case in rem_conf_am where i... - 12:16 PM task #8047 (Feedback): Remaining issues in TaxDistributionEditor
- Currently it is not possible to enter the status in the details view (the field is disabled). I do not fully remember...
- 12:03 PM task #8047: Remaining issues in TaxDistributionEditor
- >Try to optimize the column width at start or after area selection. Details may be discussed. We have/had a similar d...
- 11:56 AM task #8047: Remaining issues in TaxDistributionEditor
- It is not possible to define "use default" for the number of dropdown items, neither for DB prefs nor for local prefs.
- 11:55 AM task #8047: Remaining issues in TaxDistributionEditor
- Andreas Müller wrote:
> The number field in the preferences is still not wide enough
The problem is it changes th... - 11:45 AM task #8047: Remaining issues in TaxDistributionEditor
- Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > ... no it looks like the 2 influence eac... - 11:11 AM task #8047: Remaining issues in TaxDistributionEditor
- The number field in the preferences is still not wide enough
- 01:52 AM bug #8892: Taxon search does not work for names without rank
- By the way, I saw that there is a new test data file TaxonNodeDaoHibernateImplTest.findWithoutRank.xml which seems to...
- 01:39 AM bug #8892: Taxon search does not work for names without rank
- I do not really understand this. The test failed because commit 919b6fe025ff1b9 did change the number of parameters i...
03/20/2020
- 10:16 PM bug #8892: Taxon search does not work for names without rank
- The new test method obviously fails due to the problem described above http://int.e-taxonomy.eu/jenkins/job/cdmlib-IN...
- 07:50 PM bug #8892: Taxon search does not work for names without rank
- Andreas Müller wrote:
> The ticket here is only about handling null values correctly which can be done without huge ... - 04:47 PM bug #8892: Taxon search does not work for names without rank
- The ticket here is only about handling null values correctly which can be done without huge changes.
- 04:46 PM bug #8892: Taxon search does not work for names without rank
- I have not checked the above but probably you are right that we should clean it up in such a way.
But I strongly rec... - 03:24 PM bug #8892: Taxon search does not work for names without rank
- Working on this code a couple of questions are coming up, since a couple of things are quire unclear:
1)
As las... - 04:12 PM bug #8531 (Closed): factual data and media view always opened when opening taxon
- 04:11 PM bug #8898 (New): Remaining problems with closed/open facts/media view when opening taxon editor or distribution editor
- copied from #8531:
This mostly works but sometimes the behavior is still unexpected, but not that easy to reproduc... - 04:08 PM task #8047 (Resolved): Remaining issues in TaxDistributionEditor
- please review the issues, mentioned above
- 09:51 AM task #8047: Remaining issues in TaxDistributionEditor
- Andreas Müller wrote:
> "Choose Source" does not change label if a source is already selected. It may change label t... - 04:07 PM bug #8860 (Resolved): Sec reference not inherited from classification anymore
- 12:12 PM feature request #8891: Add categorical and quantiative data to DwC-A
- Please review who ever wants to review. But don't close the ticket as there are open issues (test and remaining field...
- 12:40 AM feature request #8891: Add categorical and quantiative data to DwC-A
- Test with categorical data is not yet running as saving of state is problematic (it is DefinedTermBase), all the rest...
- 11:17 AM bug #8897 (Closed): [Mac] Jre Taxeditor fails to start in MacOS X
- Problem solved. The taxeditor-JRE starts again on MacOS X
- 09:59 AM bug #8897 (Resolved): [Mac] Jre Taxeditor fails to start in MacOS X
- It looks as if the folder structure in the app has been changed due to modified tycho packaging.
I adapted the path... - 09:53 AM bug #8897 (Closed): [Mac] Jre Taxeditor fails to start in MacOS X
- The Taxeditor product which is bundled with JRE fails to start on MacOS X.
A warning is shown instead, notifying t... - 10:15 AM task #7404: Add linux and mac to editor installation documentation
- Andreas Kohlbecker wrote:
> Hi Andreas, I take this ticket - OK?
sure
- 09:44 AM task #7404: Add linux and mac to editor installation documentation
- Hi Andreas, I take this ticket - OK?
- 09:48 AM EDIT Platform Etablierung task #8896 (Rejected): Review tickets in milestone Edit>Update Documentation
- A *Target Version* exists in the Edit project which is dedicated to documentation update tasks:
https://dev.e-tax...
03/19/2020
- 11:22 PM feature request #8891 (Resolved): Add categorical and quantiative data to DwC-A
- 09:59 PM bug #8860 (In Progress): Sec reference not inherited from classification anymore
- For me this is still not working.
The new Taxon dialog shows the sec.-reference:
But i... - 02:33 PM bug #8892: Taxon search does not work for names without rank
- The current solution solves the problem but contradicts the idea of UuidAndTitleCache (DTO). This idea is to not init...
- 02:25 PM bug #8531 (Feedback): factual data and media view always opened when opening taxon
- This mostly works but sometimes the behavior is still unexpected, but not that easy to reproduce.
Something that o... - 02:05 PM bug #8879 (Closed): strange file name for export file
- Now it looks as expected
- 11:34 AM feature request #8044 (Closed): Add "Move to..." menu to term editor
- Excellently solved!
I could not find further problems or glitches which are not yet handled in other tickets. - 10:20 AM feature request #8044 (Resolved): Add "Move to..." menu to term editor
- Applied in changeset commit:taxeditor|29f07c5dca339559d9bc5e7efd351ec4fa5f3869.
- 09:50 AM feature request #8044: Add "Move to..." menu to term editor
- Katja Luther wrote:
> In windows the finish button is highlighted after selecting the parent and when no parent is s... - 07:15 AM feature request #8044: Add "Move to..." menu to term editor
- In windows the finish button is highlighted after selecting the parent and when no parent is selected disabled.
 - 04:23 PM feature request #8885: Distinguish between terms and vocabularies in term search dialog
- adding a screenshot to illustrate the confusion
- 02:29 PM feature request #8624 (Closed): Add abbrev title cache to search in bulk editor
- I tested with the caryophyllales_spp data at the example of the name *Achatocarpus balansae Schinz & Autran*
The ... - 01:02 PM bug #8894 (Closed): fix jenkins job cdm-server_trigger_remote-INSTALL
- I decided for using the *Build Authorization Token Root Plugin*. This adds another plugin dependency but avoids manag...
- 11:55 AM bug #8328 (Resolved): Unpublished record visible in Portal if related name is published
- Hi Henning, this is fixed. Please review after the release if it is also working in the production system.
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