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From 02/25/2020 to 03/25/2020

03/25/2020

07:26 PM feature request #8902 (New): Add "open in" menu to row menu in matrix editor
If the row represents a taxon or a taxon description the according taxon should be opened in name or bulk (name or ta... Andreas Müller
06:14 PM bug #8901 (In Progress): Deleting an aggregated description from a descriptive matrix does not de...
I removed aggregated taxon description via the matrix editor.
This did not remove the descriptions from their accord...
Andreas Müller
04:27 PM bug #8900 (Closed): Layout issues with new image viewer
see
* http://www.palmweb.org/cdm_dataportal/taxon/7c0b9529-1b28-4e1e-afda-089ac63f58a3/images#?c=&m=&s=&cv=&manif...
Andreas Kohlbecker
02:27 PM bug #8899 (Closed): NullPointerException (NPE) in ManifestController
Mostly happens in flora-malesiana, see below and also in
* /flora-guianas/iiif/taxon/2bc3831d-c5bd-435e-8058-8d62...
Andreas Kohlbecker
12:21 PM bug #8784 (Closed): Deleting a specimen description not possible
Andreas Müller
12:16 PM bug #8784: Deleting a specimen description not possible
Andreas Müller wrote:
> Hi Katja, I just tried to delete the "test data" as described in the description of this tic...
Katja Luther
11:43 AM Revision 1cf756d1 (taxeditor): fix problem with last selected references
Katja Luther

03/24/2020

05:22 PM bug #8784 (Feedback): Deleting a specimen description not possible
Hi Katja, I just tried to delete the "test data" as described in the description of this ticket and as required in co... Andreas Müller
11:37 AM Revision 75d2589a (taxeditor): Merge branch 'hotfix/5.13.1'
jenkins
11:17 AM Revision ad74c7f6 (taxeditor): fix problem with last selected references
Katja Luther
11:08 AM Revision 5c3b0220 (taxeditor): Updated version in pom / project files to taxeditor version : 5.13...
jenkins

03/23/2020

12:16 AM bug #8790 (Closed): Update measurement units for existing quantitative data missing a unit
I did not write a script but all data was updated on production. Updates were needed on additivity_ontology, caryo_sp... Andreas Müller
03:37 PM bug #8790 (Feedback): Update measurement units for existing quantitative data missing a unit
still needs to be done Andreas Müller
11:04 PM Revision 97bdbb2f (cdmlib): cleanup
Andreas Müller
10:53 PM Revision b5ac767a (cdmlib): cleanup
Andreas Müller
02:23 PM Revision d3ea983c (cdm-server): Merge branch 'release/5.13.0' into develop
jenkins
02:23 PM Revision 6fe17279 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
02:23 PM Revision 15949fa3 (cdm-server): updating poms for branch'release/5.13.0' with non-snapshot versions
jenkins
02:22 PM Revision f7afb56b (cdm-webapp): Merge branch 'release/5.13.0' into develop
jenkins
02:22 PM Revision 29d9600e (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
02:21 PM Revision fe29c376 (cdm-webapp): updating poms for branch'release/5.13.0' with non-snapshot versions
jenkins
02:21 PM Revision eb68f936 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.13.0
jenkins
02:19 PM Revision c082ce18 (taxeditor): Merge branch 'release/5.13.0' into develop
jenkins
02:08 PM Revision 2e07f720 (cdm-vaadin): Merge branch 'release/5.13.0' into develop
jenkins
02:08 PM Revision 334ed878 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
02:04 PM Revision 53714f94 (cdm-dataportal): Merge branch 'release/5.13.0' into develop
jenkins
02:04 PM Revision 184d48f2 (cdm-vaadin): updating poms for branch'release/5.13.0' with non-snapshot versions
jenkins
02:03 PM Revision 9423951f (cdm-vaadin): jenkins bumping cdmlib.version to 5.13.0
jenkins
02:03 PM Revision a2fb43ac (cdm-dataportal): updating poms for branch'release/5.13.0' with non-snapshot ve...
jenkins
02:03 PM Revision 802b95d9 (cdm-dataportal): release-preparation: production level css
jenkins
02:03 PM Revision a8452960 (taxeditor): Merge branch 'release/5.13.0'
jenkins
01:49 PM Revision 9c799041 (cdmlib): Updating develop poms back to pre merge state
jenkins
01:49 PM Revision c82ba5e5 (cdmlib): Merge branch 'master' into develop
jenkins
01:49 PM Revision 2d05bcbf (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
01:49 PM Revision 34f1f4e4 (cdmlib): Merge branch 'release/5.13.0'
jenkins
01:28 PM Revision d01a3644 (cdmlib): updating poms for branch'release/5.13.0' with non-snapshot versions
jenkins
01:26 PM Revision 1ab2fe80 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.13.0-S...
jenkins
01:26 PM Revision 0d42921d (cdm-webapp): updating poms for 5.14.0-SNAPSHOT development
jenkins
12:48 PM Revision c2049e8d (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.14.0-S...
jenkins
12:48 PM Revision 3b4720f8 (taxeditor): Updated version in pom / project files to taxeditor version : 5.14...
jenkins
12:48 PM Revision dd4d7a8a (taxeditor): Updated version in pom / project files to taxeditor version : 5.13...
jenkins
12:45 PM Revision cafc4715 (cdm-vaadin): jenkins bumping cdmlib.version to 5.13.0-SNAPSHOT
jenkins
12:45 PM Revision 6e715ca9 (cdm-vaadin): updating poms for 5.14.0-SNAPSHOT development
jenkins
12:45 PM Revision a55c2afa (cdm-vaadin): updating poms for 5.13.0 branch with snapshot versions
jenkins
12:45 PM Revision d9b7e73a (cdm-vaadin): jenkins bumping cdmlib.version to 5.14.0-SNAPSHOT
jenkins
12:45 PM Revision 1eb7ae6e (cdm-server): updating poms for 5.14.0-SNAPSHOT development
jenkins
12:44 PM Revision 73e7ce06 (cdm-dataportal): updating poms for 5.14.0-SNAPSHOT development
jenkins
12:41 PM Revision 43306ae2 (cdmlib): updating poms for 5.14.0-SNAPSHOT development
jenkins
12:29 PM bug #8860 (Closed): Sec reference not inherited from classification anymore
Ok, this is definitely fixed. Andreas Kohlbecker
11:16 AM Revision fc0e5d0a (taxeditor): ref #8047: fixing number of status issues - layout
Katja Luther

03/22/2020

12:38 AM bug #8733: Descriptive data set: Specimens of a newly added taxon are not listed in Select Specim...
The fix seems to improve the situation a lot. If the dataset is changed the specimen list is recomputed.
Not yet s...
Andreas Müller
09:12 PM Revision 3afc2686 (taxeditor): ref #8047: fixing number of status issues
Katja Luther
09:10 PM task #8047: Remaining issues in TaxDistributionEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > The number field in the preferences is still not wide enough
>
...
Katja Luther
09:09 PM task #8047: Remaining issues in TaxDistributionEditor
Andreas Müller wrote:
> >Try to optimize the column width at start or after area selection. Details may be discussed...
Katja Luther
09:01 PM task #8047: Remaining issues in TaxDistributionEditor
Andreas Müller wrote:
> Currently it is not possible to enter the status in the details view (the field is disabled)...
Katja Luther

03/21/2020

01:29 PM bug #8562: Remaining issues for preference pages
Katja Luther wrote:
> Andreas Müller wrote:
>
> > The Label "Acutal status selection, the area specific selectio...
Andreas Müller
01:10 PM bug #8562 (Feedback): Remaining issues for preference pages
Katja Luther wrote:
> Andreas Müller wrote:
> > >The general io page should contain the „Show Export/Import Menu“ o...
Andreas Müller
12:59 PM task #8047: Remaining issues in TaxDistributionEditor
This ticket is now fully reviewed. Only the issues I mentioned are still open (as far as I can see). Andreas Müller
12:58 PM task #8047: Remaining issues in TaxDistributionEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > >Sort status in drop down alphabetically
> >
> > This mostly s...
Andreas Müller
12:51 PM task #8047: Remaining issues in TaxDistributionEditor
Andreas Müller wrote:
> >Sort status in drop down alphabetically
>
> This mostly seems to be fixed but I found 1 ...
Andreas Müller
12:20 PM task #8047: Remaining issues in TaxDistributionEditor
>Sort status in drop down alphabetically
~~This mostly seems to be fixed but I found 1 case in rem_conf_am where i...
Andreas Müller
12:16 PM task #8047 (Feedback): Remaining issues in TaxDistributionEditor
Currently it is not possible to enter the status in the details view (the field is disabled). I do not fully remember... Andreas Müller
12:03 PM task #8047: Remaining issues in TaxDistributionEditor
>Try to optimize the column width at start or after area selection. Details may be discussed. We have/had a similar d... Andreas Müller
11:56 AM task #8047: Remaining issues in TaxDistributionEditor
It is not possible to define "use default" for the number of dropdown items, neither for DB prefs nor for local prefs. Andreas Müller
11:55 AM task #8047: Remaining issues in TaxDistributionEditor
Andreas Müller wrote:
> The number field in the preferences is still not wide enough
The problem is it changes th...
Andreas Müller
11:45 AM task #8047: Remaining issues in TaxDistributionEditor
Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > ... no it looks like the 2 influence eac...
Andreas Müller
11:11 AM task #8047: Remaining issues in TaxDistributionEditor
The number field in the preferences is still not wide enough Andreas Müller
01:52 AM bug #8892: Taxon search does not work for names without rank
By the way, I saw that there is a new test data file TaxonNodeDaoHibernateImplTest.findWithoutRank.xml which seems to... Andreas Müller
01:39 AM bug #8892: Taxon search does not work for names without rank
I do not really understand this. The test failed because commit 919b6fe025ff1b9 did change the number of parameters i... Andreas Müller
01:27 AM Revision 65867bfc (cdmlib): fix #8892 fix select statement for TaxonNodeDaoHibernateImpl.getUuidA...
Andreas Müller

03/20/2020

10:16 PM bug #8892: Taxon search does not work for names without rank
The new test method obviously fails due to the problem described above http://int.e-taxonomy.eu/jenkins/job/cdmlib-IN... Andreas Kohlbecker
07:50 PM bug #8892: Taxon search does not work for names without rank
Andreas Müller wrote:
> The ticket here is only about handling null values correctly which can be done without huge ...
Andreas Kohlbecker
04:47 PM bug #8892: Taxon search does not work for names without rank
The ticket here is only about handling null values correctly which can be done without huge changes. Andreas Müller
04:46 PM bug #8892: Taxon search does not work for names without rank
I have not checked the above but probably you are right that we should clean it up in such a way.
But I strongly rec...
Andreas Müller
03:24 PM bug #8892: Taxon search does not work for names without rank
Working on this code a couple of questions are coming up, since a couple of things are quire unclear:
1)
As las...
Andreas Kohlbecker
07:46 PM Revision 04825efd (cdmlib): ref #8892 implementing test for TaxonNodeDaoHibernateImpl.getUuidAnd...
Andreas Kohlbecker
07:46 PM Revision 919b6fe0 (cdmlib): ref #8892 loading ranks in hql with LEFT OUTER JOINs
Andreas Kohlbecker
04:12 PM bug #8531 (Closed): factual data and media view always opened when opening taxon
Katja Luther
04:11 PM bug #8898 (New): remaining problems with closed/open facts/media view when opening name editor or...
copied from #8531:
This mostly works but sometimes the behavior is still unexpected, but not that easy to reproduc...
Katja Luther
04:08 PM task #8047 (Resolved): Remaining issues in TaxDistributionEditor
please review the issues, mentioned above Katja Luther
09:51 AM task #8047: Remaining issues in TaxDistributionEditor
Andreas Müller wrote:
> "Choose Source" does not change label if a source is already selected. It may change label t...
Katja Luther
04:07 PM bug #8860 (Resolved): Sec reference not inherited from classification anymore
Katja Luther
12:12 PM feature request #8891: Add categorical and quantiative data to DwC-A
Please review who ever wants to review. But don't close the ticket as there are open issues (test and remaining field... Andreas Müller
11:17 AM bug #8897 (Closed): [Mac] Jre Taxeditor fails to start in MacOS X
Problem solved. The taxeditor-JRE starts again on MacOS X Andreas Kohlbecker
09:59 AM bug #8897 (Resolved): [Mac] Jre Taxeditor fails to start in MacOS X
It looks as if the folder structure in the app has been changed due to modified tycho packaging.
I adapted the path...
Andreas Kohlbecker
09:53 AM bug #8897 (Closed): [Mac] Jre Taxeditor fails to start in MacOS X
The Taxeditor product which is bundled with JRE fails to start on MacOS X.
A warning is shown instead, notifying t...
Andreas Kohlbecker
10:26 AM Revision 0f76f092 (taxeditor): ref #8047: add l10n files
Katja Luther
10:15 AM task #7404: Add linux and mac to editor installation documentation
Andreas Kohlbecker wrote:
> Hi Andreas, I take this ticket - OK?
sure
Andreas Müller
09:44 AM task #7404: Add linux and mac to editor installation documentation
Hi Andreas, I take this ticket - OK? Andreas Kohlbecker
09:56 AM Revision 0016bbd3 (taxeditor): ref #8897 adapting jre path to modified tycho packaging
Andreas Kohlbecker
09:49 AM Revision 0ac4c430 (taxeditor): ref #8047: switch button label depending of existing default source
Katja Luther
09:48 AM EDIT Platform Etablierung task #8896 (New): Review tickets in milestone Edit>Update Documentation
A *Target Version* exists in the Edit project which is dedicated to documentation update tasks:
https://dev.e-tax...
Andreas Kohlbecker
09:13 AM Revision e9069de4 (taxeditor): ref #8860: fix add classification ref as sec reference
Katja Luther

03/19/2020

12:40 AM feature request #8891: Add categorical and quantiative data to DwC-A
Test with categorical data is not yet running as saving of state is problematic (it is DefinedTermBase), all the rest... Andreas Müller
11:22 PM feature request #8891 (Resolved): Add categorical and quantiative data to DwC-A
Andreas Müller
12:03 AM Revision 9582c6f6 (cdmlib): ref #8891 preliminary remove state from test for categorical data (as...
Andreas Müller
11:34 PM Revision 60486ba1 (cdmlib): ref #8891 preliminary remove state from test for categorical data (as...
Andreas Müller
11:19 PM Revision 4f90ce94 (cdmlib): cleanup
Andreas Müller
11:19 PM Revision 44320911 (cdmlib): ref #8891 Add CategoricalData and QuantitativeData to DwCA export
Andreas Müller
11:19 PM Revision a81e3c1b (cdmlib): move base formatter to base package
Andreas Müller
09:59 PM bug #8860 (In Progress): Sec reference not inherited from classification anymore
For me this is still not working.
The new Taxon dialog shows the sec.-reference:
![](picture556-1.png)
But i...
Andreas Kohlbecker
03:10 PM Revision c21cfd4b (cdm-dataportal): ref #8328 fixing bug in render_taxon_or_name related to nomrefs
Andreas Kohlbecker
02:33 PM bug #8892: Taxon search does not work for names without rank
The current solution solves the problem but contradicts the idea of UuidAndTitleCache (DTO). This idea is to not init... Andreas Müller
02:25 PM bug #8531 (Feedback): factual data and media view always opened when opening taxon
This mostly works but sometimes the behavior is still unexpected, but not that easy to reproduce.
Something that o...
Andreas Müller
02:05 PM bug #8879 (Closed): strange file name for export file
Now it looks as expected Andreas Müller
11:34 AM feature request #8044 (Closed): Add "Move to..." menu to term editor
Excellently solved!
I could not find further problems or glitches which are not yet handled in other tickets.
Andreas Kohlbecker
10:20 AM feature request #8044 (Resolved): Add "Move to..." menu to term editor
Applied in changeset commit:taxeditor|29f07c5dca339559d9bc5e7efd351ec4fa5f3869. Katja Luther
09:50 AM feature request #8044: Add "Move to..." menu to term editor
Katja Luther wrote:
> In windows the finish button is highlighted after selecting the parent and when no parent is s...
Andreas Kohlbecker
07:15 AM feature request #8044: Add "Move to..." menu to term editor
In windows the finish button is highlighted after selecting the parent and when no parent is selected disabled.
![...
Katja Luther
10:20 AM Revision 29f07c5d (taxeditor): fix #8044: focus on search field results in search for enter
Katja Luther
09:40 AM Revision d23eff06 (taxeditor): ref #8047: fix number of status in drop down preference
Katja Luther
08:58 AM task #8047: Remaining issues in TaxDistributionEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > ... no it looks like the 2 influence each other. If I store a new v...
Katja Luther
07:34 AM task #8047: Remaining issues in TaxDistributionEditor
Andreas Müller wrote:
> ... no it looks like the 2 influence each other. If I store a new value in DB prefs this val...
Katja Luther
08:57 AM Revision 7d915639 (taxeditor): ref #8047: fix number of status in drop down preference
Katja Luther

03/18/2020

10:52 PM feature request #8044 (Feedback): Add "Move to..." menu to term editor
Katja Luther
04:21 PM feature request #8044: Add "Move to..." menu to term editor
I discovered a dangerous behavior of the "Choose Parent" dialog:
When the focus is set to the filter text field on...
Andreas Kohlbecker
10:47 PM bug #8879 (Resolved): strange file name for export file
Applied in changeset commit:taxeditor|bcb2c54a05a256e27c14a76124a91d4d9da5c933. Katja Luther
10:20 PM bug #8879 (Feedback): strange file name for export file
Now we have 202003182218-DWCA_EXPORTrem_conf_am.zip. Better then before but there is an underscore missing now betwee... Andreas Müller
10:44 PM task #8047: Remaining issues in TaxDistributionEditor
Andreas Müller wrote:
> > Allow multi-select when opening the distribution editor to better define the taxon sets to...
Katja Luther
06:54 PM task #8047: Remaining issues in TaxDistributionEditor
> Allow multi-select when opening the distribution editor to better define the taxon sets to work with (important for... Andreas Müller
06:48 PM task #8047: Remaining issues in TaxDistributionEditor
... no it looks like the 2 influence each other. If I store a new value in DB prefs this value is also shown in local... Andreas Müller
06:46 PM task #8047: Remaining issues in TaxDistributionEditor
Also the width of the field differs in DB prefs and in local prefs. In DB prefs it is definetely to small as only 1 n... Andreas Müller
06:39 PM task #8047: Remaining issues in TaxDistributionEditor
>Make the number of dropdown items (for status selection) configurable
The field in the preferences is not a pure ...
Andreas Müller
06:35 PM task #8047 (Feedback): Remaining issues in TaxDistributionEditor
"Choose Source" does not change label if a source is already selected. It may change label to "Change source" (and ba... Andreas Müller
10:40 PM Revision bcb2c54a (taxeditor): fix #8879: add _ between export name and db name
Katja Luther
10:22 PM feature request #8890 (Closed): Allow multiselection for open_in menu
Works as expected Andreas Müller
04:33 PM feature request #8885: Distinguish between terms and vocabularies in term search dialog
This is a suggestion how the dialog can be improved:
![](picture303-1.png)
Andreas Kohlbecker
04:23 PM feature request #8885: Distinguish between terms and vocabularies in term search dialog
adding a screenshot to illustrate the confusion Andreas Kohlbecker
02:29 PM feature request #8624 (Closed): Add abbrev title cache to search in bulk editor
I tested with the caryophyllales_spp data at the example of the name *Achatocarpus balansae Schinz & Autran*
The ...
Andreas Kohlbecker
01:02 PM bug #8894 (Closed): fix jenkins job cdm-server_trigger_remote-INSTALL
I decided for using the *Build Authorization Token Root Plugin*. This adds another plugin dependency but avoids manag... Andreas Kohlbecker
11:55 AM bug #8328 (Resolved): Unpublished record visible in Portal if related name is published
Hi Henning, this is fixed. Please review after the release if it is also working in the production system. Andreas Kohlbecker
11:54 AM Revision 0868ab9a (cdmlib): ref #8328 improving permission check in NameController and fixing che...
Andreas Kohlbecker
11:42 AM Revision 707cb8bc (cdmlib): ref #8328 hiding name relations with names for unpublished registrati...
Andreas Kohlbecker
09:35 AM Revision 29b5ec26 (taxeditor): add IRereferencingObjectsView interface
Katja Luther

03/17/2020

06:44 PM bug #8894 (In Progress): fix jenkins job cdm-server_trigger_remote-INSTALL
Andreas Kohlbecker
06:43 PM bug #8894: fix jenkins job cdm-server_trigger_remote-INSTALL
From reading the Jenkins issues
* https://issues.jenkins-ci.org/browse/JENKINS-61375
* https://issues.jenkins-ci....
Andreas Kohlbecker
08:50 AM bug #8894 (Closed): fix jenkins job cdm-server_trigger_remote-INSTALL
the job cdm-server_trigger_remote-INSTALL when triggering the remote job via the *Parameterized Remote Trigger Plugin... Andreas Kohlbecker
05:46 PM bug #7766 (Closed): Remaining issues for using relationship DTO webservice in portal
Andreas Kohlbecker wrote:
> The sort order seem to have problems. Is this an regression or has this point be missed?...
Andreas Kohlbecker
05:32 PM Revision 5c750190 (cdm-dataportal): ref #7766 order taxon relationships by type and scientific na...
Andreas Kohlbecker
02:20 PM feature request #8867 (Closed): media list services as iiif manifest service
above mentioned problems (comment 5) are solved.
Closing this issue.
Andreas Kohlbecker
01:15 PM Revision c0667822 (cdmlib): ref #6970 fixing NPE
Andreas Kohlbecker
10:22 AM task #5083 (Closed): Alternative image viewer for dataportal
All remaning open issues solved.
Furhter tasks related to the UV will be handled in a separate ticket.
Andreas Kohlbecker
10:18 AM feature request #8895 (Closed): Specimen page: show specimen description as continuous text
For the taxon profile page the function `render_description_string($description, $root_nodes, &$item_cnt = 0) ` is be... Andreas Kohlbecker
10:03 AM feature request #6878: choose a base font for the portal and deliver it from the drupal module or...
In den letzten 26 Tagen wurden 4 Stimmen abgegeben, alle mit positivem Votum für die Noto Sans.
Damit ist diese Find...
Andreas Kohlbecker

03/16/2020

06:01 PM task #8835: DISCUSS if the UPDATE & DELETE permission stategy should become a general principle i...
I implemented the group `Editor-Reference` for issue #8836, but we may decide to remove the group again depending on ... Andreas Kohlbecker
05:58 PM bug #8836 (Closed): add default role Editor-Reference (REFERENCE.[UPDATE,DELETE], TEAMORPERSONBAS...
I now implemented this group. We may decide removing this group again depending on the outcome of the discussion in #... Andreas Kohlbecker
05:56 PM bug #8836 (Resolved): add default role Editor-Reference (REFERENCE.[UPDATE,DELETE], TEAMORPERSONB...
Applied in changeset commit:cdmlib|1dd5b326e489c3a7a9a945109a077f8f1293d1d5. Andreas Kohlbecker
04:24 PM bug #8836 (In Progress): add default role Editor-Reference (REFERENCE.[UPDATE,DELETE], TEAMORPERS...
Andreas Kohlbecker
05:56 PM Revision 1dd5b326 (cdmlib): fix #8836 group Editor-Reference implemented (see also ref #8835)
Andreas Kohlbecker
04:12 PM bug #8833: distribution editor: Exception when filtering by taxon
moving this ticket to the same target version as #8834 Andreas Kohlbecker
04:11 PM bug #8154 (Worksforme): NameController.doGetTaggedName fails due to [UPDATE] not permitted for '...
I can't reproduce this at the moment and there are no such Exceptions in the last server log Andreas Kohlbecker
01:50 PM bug #8427 (Closed): LazyInitializationException in NameController.doGetTaggedFullTitle()
fixed, as http://test.e-taxonomy.eu/cdmserver/cichorieae/name/0cdfee83-aa6a-4a22-a8dc-368781e7ddf2/taggedFullTitle no... Andreas Kohlbecker
12:35 PM bug #8427 (Resolved): LazyInitializationException in NameController.doGetTaggedFullTitle()
Applied in changeset commit:cdmlib|098b423fcbcd5f4efd7aaaa6b5e51439a9d2bcc9. Andreas Kohlbecker
11:21 AM bug #8427 (In Progress): LazyInitializationException in NameController.doGetTaggedFullTitle()
this is reproducible on the test server:
* http://test.e-taxonomy.eu/cdmserver/cichorieae/name/ddf9cc53-cdfc-45d5-...
Andreas Kohlbecker
12:35 PM Revision 098b423f (cdmlib): fix #8427 fixing init strategy for references and authorship
Andreas Kohlbecker
11:03 AM bug #8866 (Closed): LazyInitializationException (LIE) in portal/taxon/{uuid}
issue is fixed, this is confirmed by the fact that the LIE no longer occures: http://test.e-taxonomy.eu/cdmserver/car... Andreas Kohlbecker
09:40 AM bug #8866 (Resolved): LazyInitializationException (LIE) in portal/taxon/{uuid}
Applied in changeset commit:cdmlib|7e76406ea76d8a95b7cbb718f23970cb7581443a. Andreas Kohlbecker
09:56 AM feature request #8890 (Resolved): Allow multiselection for open_in menu
please review for name editor, taxon node wizard, classification wizard and distribution editor. Katja Luther
09:54 AM feature request #8893 (New): Multi select for open in bulk editor
follow up from #8890:
in taxon navigator the dynamic menu is also available for multi select, but the implementati...
Katja Luther
09:52 AM Revision 924cc33b (taxeditor): ref #8890: handle dynamic menu for ref objects view and taxonnode ...
Katja Luther
09:39 AM Revision 7e76406e (cdmlib): fix #8866 fixing incorrect bean initialization which has been indrudu...
Andreas Kohlbecker

03/13/2020

02:02 PM Revision 8dd22643 (cdmlib): ref #8892: add missing comparator
Katja Luther
01:14 PM bug #8892: Taxon search does not work for names without rank
please review Katja Luther
01:10 PM bug #8892 (Resolved): Taxon search does not work for names without rank
Applied in changeset commit:cdmlib|44deb132b6744b0a92b419fef363a9f98c543af0. Katja Luther
01:01 PM bug #8892 (Closed): Taxon search does not work for names without rank
Searching for taxa by titleCache fails for taxa having a name without a rank.
The hql query with "SELECT ... , name...
Katja Luther
01:06 PM Revision 44deb132 (cdmlib): fix #8892: fix problem of name without rank in taxon search
Katja Luther
12:32 PM feature request #8891 (Closed): Add categorical and quantiative data to DwC-A
this is an urgent requirmenet for FoG Andreas Müller

03/12/2020

09:54 AM Revision 86627d31 (taxeditor): ref #8890: fix referencing objects view open in menu
Katja Luther
09:41 AM Revision dd23c061 (taxeditor): ref #8890: fix referencing objects view open in menu
Katja Luther

03/11/2020

02:19 PM Revision 8f68a26c (taxeditor): ref #8450: add label to specimen filter
Katja Luther
01:28 PM bug #8552 (Resolved): Avoid DB call for matrix state DB preferences
Applied in changeset commit:taxeditor|720c82fe2d53187c2149a7fad4081e6d639bc1a9. Katja Luther
01:28 PM Revision 720c82fe (taxeditor): fix #8552: use preference cache for loading character matrix settings
Katja Luther
12:54 PM bug #8881 (Closed): Use pure last names (without initials) for in-references of taxon names
this seems to work. Tested in nightly. Katja Luther
11:38 AM Revision 23a5eb46 (taxeditor): ref #8890: add constructor for bulkeditor input with class and uuid
Katja Luther
11:28 AM Revision 963170aa (taxeditor): ref #8890: allow multiselect for open in dynamic menu
Katja Luther
11:27 AM feature request #8890 (Closed): Allow multiselection for open_in menu
For the distribution editor we needed the possibility to select more than one taxon node which should be opened in di... Katja Luther
10:32 AM Revision eb61b01b (taxeditor): minor in preferences
Katja Luther

03/10/2020

03:40 PM bug #8881: Use pure last names (without initials) for in-references of taxon names
Can you please review? Andreas Müller
02:16 PM bug #8881: Use pure last names (without initials) for in-references of taxon names
Applied in changeset commit:cdmlib|6701ae84b1f1a9266fb45fd795a5a56ba8e8ae26. Andreas Müller
02:11 PM bug #8881 (Resolved): Use pure last names (without initials) for in-references of taxon names
This is implemented now.
Only for exceptional states like protectedTitleCache, protectedNomenclaturalTitel or empt...
Andreas Müller
02:16 PM Revision 6701ae84 (cdmlib): fix #8881 Use pure last names (without initials) for in-references of...
Andreas Müller
02:16 PM Revision 0928b8c3 (cdmlib): cleanup
Andreas Müller
01:05 PM Revision 895e21ca (taxeditor): code cleaning and fix potential null pointer
Katja Luther
12:58 PM Revision 033e9150 (taxeditor): remove deprecated editor manager
Katja Luther
12:45 PM Revision 98c05c05 (taxeditor): minor
Katja Luther
11:54 AM Revision abe2817d (taxeditor): ref #8562: clone io page to ui/navigator
Katja Luther
11:45 AM bug #8562 (Resolved): Remaining issues for preference pages
Andreas Müller wrote:
> >The general io page should contain the „Show Export/Import Menu“ of the actual „General“ pa...
Katja Luther
11:09 AM bug #8562: Remaining issues for preference pages
Andreas Müller wrote:

> The Label "Acutal status selection, the area specific selection is only available for ser...
Katja Luther
11:00 AM Revision e5b9344b (taxeditor): ref #8562: change general to default in label of status selection ...
Katja Luther
10:15 AM bug #8824: No dirty flag when adding new factual data set
move to 5.14 Katja Luther
10:03 AM task #8635: install collectd + facette for server monitoring
mostly done. Andreas Kohlbecker
10:02 AM bug #8849: NPE in synonym DetailsViewer for synonyms without accepted taxon
move to 5.14 Katja Luther
10:02 AM bug #8860 (Resolved): Sec reference not inherited from classification anymore
This seems to be fixed already. I tested on rem_conf_am and the new taxon has the reference of the classification as ... Katja Luther
09:56 AM bug #8431: missing status bar for cdm light export
move to 5.14 Katja Luther
09:55 AM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
move to 5.14 Katja Luther
09:54 AM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
move to 5.14 Katja Luther
09:53 AM bug #8494: Better ABCD Preferences Page
still have a look by myself if everything is fixed. Katja Luther
09:52 AM bug #8498: Set Flags should show the current status of the flags
move to 5.14 Katja Luther
09:51 AM bug #8531 (Resolved): factual data and media view always opened when opening taxon
this should be fixed, now. Katja Luther
09:46 AM bug #8733 (Resolved): Descriptive data set: Specimens of a newly added taxon are not listed in Se...
please review, if this solution already solves the problem, otherwise move the ticket to 5.14 Katja Luther
09:45 AM bug #8815: Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao
the blocker is moved to 5.14, this ticket also Katja Luther
09:36 AM bug #8839 (Closed): Role misses toString method
changed to direct field access. Andreas Kohlbecker
09:35 AM Revision 31cda96c (cdmlib): ref #8839 directly referencing the role field
Andreas Kohlbecker
09:32 AM task #8047 (Resolved): Remaining issues in TaxDistributionEditor
for the missing issues created a new ticket #8889 and close this ticket.
please review.
Katja Luther
09:28 AM feature request #8889 (New): Remaining issues for distribution editor - continue
copied from #8047:
* In preferences translate possible configuration terms "ID in Vocabulary" => "ID im Vokabular...
Katja Luther

03/09/2020

09:42 PM feature request #8888 (Closed): responsive width for universal viewer
the width of the universal viewer should be adapted to the page width
assure the problem described in #8900 are al...
Andreas Kohlbecker
06:20 PM task #5083 (Resolved): Alternative image viewer for dataportal
clean urls problem solved, the universalviewer is now ready to be used in the data portal Andreas Kohlbecker
01:52 PM task #5083: Alternative image viewer for dataportal
last remaining problem:
* the universalviewer gallery does not work with drupal clean urls (ui-config.json is not ...
Andreas Kohlbecker
06:18 PM Revision b45a8503 (cdm-dataportal): ref #5083 fixing jq-universalviewer.js for clean urls
Andreas Kohlbecker
05:32 PM bug #8562: Remaining issues for preference pages
>on local pref distribution status page the selection button is not disabled if db pref does not allow override.
...
Andreas Müller
05:07 PM bug #8562 (Feedback): Remaining issues for preference pages
>The general io page should contain the „Show Export/Import Menu“ of the actual „General“ page.-> this preference sho... Andreas Müller
05:01 PM bug #8562 (Resolved): Remaining issues for preference pages
Applied in changeset commit:taxeditor|ecdbb425f7a58d2d969aaace4f3f47874e0e4fbf. Katja Luther
04:55 PM bug #8562: Remaining issues for preference pages
Andreas Müller wrote:
> >Common Names => Common Name Languages (and/or, if it's too long change the label of the pag...
Andreas Müller
04:47 PM bug #8562 (Feedback): Remaining issues for preference pages
>Common Names => Common Name Languages (and/or, if it's too long change the label of the page to "Common Name Languag... Andreas Müller
02:07 PM bug #8562 (Resolved): Remaining issues for preference pages
two issues are postponed (#8039) and the specimen features, but the rest should be fixed. Katja Luther
05:24 PM bug #8887 (New): New issues for preference pages
Bugs:
* Distribution Data-Status: when opening the status dialog via the table the select area button is not disab...
Andreas Müller
05:03 PM feature request #8624 (Resolved): Add abbrev title cache to search in bulk editor
Katja Luther
04:52 PM feature request #8624 (Feedback): Add abbrev title cache to search in bulk editor
Andreas Müller wrote:
> For me it still does not work. As soon as my search contains any part of the fulltitlecache ...
Katja Luther
04:51 PM feature request #8624 (Resolved): Add abbrev title cache to search in bulk editor
Applied in changeset commit:taxeditor|a17b1bfce808174323c58b7cad023ce991d69ef0. Katja Luther
03:06 PM feature request #8624 (Feedback): Add abbrev title cache to search in bulk editor
For me it still does not work. As soon as my search contains any part of the fulltitlecache I get no result. E.g sear... Andreas Müller
10:47 AM feature request #8624 (Resolved): Add abbrev title cache to search in bulk editor
I added the fulltitleCache to the search for taxon names in bulk editor. I will create a new ticket for the more deta... Katja Luther
05:00 PM Revision ecdbb425 (taxeditor): fix #8562: label issue
Katja Luther
04:55 PM bug #8879 (Resolved): strange file name for export file
Applied in changeset commit:taxeditor|d86ec22054b1e98d18820c73dd8cd94a11c08585. Katja Luther
03:11 PM bug #8879 (Feedback): strange file name for export file
Almost perfect. Now we have 202003091510-DWCA_EXPORT_export_rem_conf_am.zip
But still we could report the redundant ...
Andreas Müller
12:05 PM bug #8879 (Resolved): strange file name for export file
Applied in changeset commit:taxeditor|5bf7fbd15641ea84e387fdbef464d5146b6d308a. Katja Luther
04:55 PM Revision d86ec220 (taxeditor): fix #8879: remove export from file name
Katja Luther
04:51 PM Revision a17b1bfc (taxeditor): fix #8624: adapt search manager to fulltitlecache search
Katja Luther
04:11 PM feature request #8756 (Resolved): Refresh button for structure tree and property tree in Characte...
Now I tested on another machine and it first worked. But then I tested to change the tree on 1 machine and then refre... Andreas Müller
03:19 PM task #8886 (Closed): Import Lichenes Genera
Andreas Müller
03:14 PM bug #8881 (In Progress): Use pure last names (without initials) for in-references of taxon names
Andreas Müller
03:04 PM Revision 73ee58fa (taxeditor): ref #8494: better handling of providers provided by webservice and...
Katja Luther
02:56 PM bug #8791 (Closed): Measurement units are not assigned to quantitative data in matrix
Andreas Müller
09:38 AM bug #8791 (Resolved): Measurement units are not assigned to quantitative data in matrix
Applied in changeset commit:taxeditor|3209a2511593ad18ebcdf8bfeb9ff8702da64b2a. Katja Luther
02:49 PM Revision ad938fd2 (cdmlib): ref #8044: moveTerm return updateResult and voc search is contains se...
Katja Luther
02:46 PM bug #8847 (Closed): Name in Source is added always when moving description from one taxon to another
Andreas Müller
11:36 AM bug #8847 (Resolved): Name in Source is added always when moving description from one taxon to an...
Applied in changeset commit:taxeditor|322d3caae1d8adc08a0a8ae242229e5df34113fa. Katja Luther
02:42 PM feature request #8044 (Resolved): Add "Move to..." menu to term editor
Katja Luther
02:41 PM feature request #8044: Add "Move to..." menu to term editor
Andreas Müller wrote:
> Terms and vocabularies are not clearly distinguished now in the search dialog. Especially be...
Katja Luther
02:40 PM feature request #8885 (New): Distinguish between terms and vocabularies in term search dialog
from #8044:
Terms and vocabularies are not clearly distinguished now in the search dialog. Especially because voca...
Katja Luther
02:38 PM Revision bc6f4f4e (taxeditor): ref #8044: handle update result of moveTerm correctly
Katja Luther
02:07 PM bug #8830 (Closed): add missing spaces to statistical value representations
on the page linked above as example, it now looks like:
~~~
0 m [2]
~~~
so i am closing this issue.
Andreas Kohlbecker
02:05 PM bug #8830 (Resolved): add missing spaces to statistical value representations
sehe ich auch so und habe den code entsprechend geändert: commit:cdm-dataportal|3603b96e Andreas Kohlbecker
02:05 PM Revision 694478ab (taxeditor): ref #8562: ui issues in preferences
Katja Luther
02:04 PM Revision 3603b96e (cdm-dataportal): ref #8830 statistical values: unit before brackets
Andreas Kohlbecker
01:51 PM feature request #8884 (New): iiif manifest service: enrich metadata with information provided by ...
copied from #8867
The service should enrich the manifest with metadata stored within the images. Metadata for ...
Andreas Kohlbecker
01:45 PM feature request #8883 (New): additional media list services as iiif manifest service
for details see #8867
**Services TODO**
* `/portal/taxon/{uuid}/media` -> `/iiif/taxon/{uuid}/manifest.json` ...
Andreas Kohlbecker
01:41 PM Revision b1c11ab3 (cdmlib): ref #8867 extending taxon manifest by includeTaxonomicChildren parameter
Andreas Kohlbecker
01:40 PM Revision 172bb491 (cdm-dataportal): ref #5083 using includeTaxonomicChildren iiif taxon media ser...
Andreas Kohlbecker
12:32 PM Revision dde81daa (cdm-dataportal): ref #5083 adding developer utility script
Andreas Kohlbecker
12:30 PM Revision 4a462641 (cdm-dataportal): ref #5083 using iif taxon manifest service in dataportal
Andreas Kohlbecker
12:27 PM Revision 86b41121 (cdmlib): ref #8867 better presentation of licenses, copyright and access right
Andreas Kohlbecker
12:05 PM Revision 5bf7fbd1 (taxeditor): fix #8879: add only name of datasource without server to export fi...
Katja Luther
11:38 AM feature request #8882 (New): adapt search to handle protected or not protected titleCaches
from #8624:
Does not yet work for TaxonName.fullTitleCache though the fulltitlecache seems to be the one that is sho...
Katja Luther
11:36 AM Revision 322d3caa (taxeditor): fix #8847: adapt labels for set name in source operations
Katja Luther
10:51 AM Revision 1e97edc1 (cdmlib): ref #8624: add search on fulltitleCache
Katja Luther
10:46 AM feature request #7793 (Closed): Master ticket for E+M editor issues
No this was a mistake, we can close this ticket, I missed to set the filter to 5.13. Katja Luther
10:45 AM feature request #7793: Master ticket for E+M editor issues
I don't understand why this was moved from 5.4 to 5.14. This ticket has a follow up ticket #7860 which includes all(?... Andreas Müller
10:19 AM bug #8385 (Closed): Open issues in DB preferences
Andreas Müller wrote:
> can you move open issues to #8489?
This is done, therefore I close this ticket.
Katja Luther
09:38 AM Revision 3209a251 (taxeditor): fix #8791: set unit when only one unit is possible
Katja Luther
08:24 AM Revision 49805fb2 (cdmlib): ref #8867 showing licenses also in manifest attributions
Andreas Kohlbecker

03/07/2020

11:06 PM Revision 18049c0b (cdmlib): ref #8867 copy image attributions & licenses to the manifest
Andreas Kohlbecker

03/06/2020

06:17 PM Revision 423442a0 (cdmlib): ref #8867 dedicated handling of rights and credits
Andreas Kohlbecker
04:38 PM bug #8881 (Closed): Use pure last names (without initials) for in-references of taxon names
Andreas Müller
03:52 PM bug #8830: add missing spaces to statistical value representations
NK:
ja sehe ich auch so, die Probenzahl in eckiger Klammer muss hinter dem Wert und seiner Einheit stehen
Andreas Müller
03:46 PM bug #8830: add missing spaces to statistical value representations
Example with n=2 at http://test.e-taxonomy.eu/dataportal/preview/cyprus/cdm_dataportal/taxon/0f8d18a9-e861-48e8-bfab-... Andreas Müller
03:23 PM bug #8830 (Feedback): add missing spaces to statistical value representations
The original issue of this ticket is correctly fixed.
But I did realize during review that now results look like: ...
Andreas Müller
03:46 PM bug #8828 (Closed): statistical values must not show empty brackets
seems to be fully fixed, but there is a related open issue at #8830#note-5 Andreas Müller
03:04 PM feature request #8861 (Closed): Sorted feature states
Works as expected. Andreas Müller
09:53 AM feature request #8861 (Resolved): Sorted feature states
Applied in changeset commit:taxeditor|ceb614de4edfb66745fd81ac7edb69d80a7874a0. Katja Luther
03:01 PM bug #8880 (New): No classification parameter selected for DwC-A export
... if export is not called on a specific classification:
![](picture259-1.png)
Always 1 alternative should be ...
Andreas Müller
02:39 PM bug #8879 (Feedback): strange file name for export file
Better but still a problem exists. Now the name looks like
202003061436-DWCA_EXPORT_export-edit-test/rem_conf_am.z...
Andreas Müller
12:03 PM bug #8879 (Resolved): strange file name for export file
please review Katja Luther
12:02 PM bug #8879 (Closed): strange file name for export file
The default file name for an export file contains the last used local_mgd datasource not the actual datasource name. Katja Luther
02:34 PM bug #8784: Deleting a specimen description not possible
This is fixed.
I do not close the ticket yet as the last issue (cleaning up production data from caryo spp) needs ...
Andreas Müller
02:31 PM bug #8782 (Closed): Delete a description included in a CdmSource should not be possible
Sorry, I was wrong, the test record was referenced by both DDS and CdmLinkSource.
No I tested with only linking to...
Andreas Müller
02:29 PM bug #8782 (Feedback): Delete a description included in a CdmSource should not be possible
Now it is not possible anymore to delete a specimen description which is referenced by an OriginalSource.
Open iss...
Andreas Müller
02:11 PM bug #8785 (New): Improve add+delete for specimen (descriptions) in the descriptive data matrix
Katja Luther wrote:
> removing of a specimen description from a descriptive dataset works in character matrix by sel...
Andreas Müller
01:41 PM bug #8791: Measurement units are not assigned to quantitative data in matrix
Ahh, it seems to work, if I have to explicitly select from a list of multiple units (if >1 units are attached to the ... Andreas Müller
01:38 PM bug #8791 (Feedback): Measurement units are not assigned to quantitative data in matrix
Data does not seem to be saved yet.
In Dialog the unit appears
![](picture191-1.png)
In the matrix it is no...
Andreas Müller
12:42 PM bug #8847: Name in Source is added always when moving description from one taxon to another
#4 and #5 are solved Katja Luther
12:03 PM Revision 56873306 (cdmlib): ref #8867 adding image amd cdm media metadata to the manifest
Andreas Kohlbecker
12:02 PM feature request #8852: Improve TaxEditor startup options
WGB:
ich würde gerne shortcuts ablegen – aber im Prinzip ist es das gleiche Poweruser-Problem mit verschiedenen Da...
Andreas Müller
12:00 PM Revision fdc5c13d (taxeditor): fix file name for export
Katja Luther
10:55 AM feature request #8756: Refresh button for structure tree and property tree in Character Editor
Andreas Müller wrote:
> It still does not work for me. In rem_conf_am I added a 3. term to Structure tree "Test" via...
Katja Luther
10:25 AM Revision f7112c5f (taxeditor): ref #8847: fix move description with setting name in source for na...
Katja Luther
10:11 AM Revision ac712404 (taxeditor): add default comparator to all term combos without own comparator
Katja Luther
09:52 AM Revision ceb614de (taxeditor): fix #8861: case insensitive string comparison for term comparator
Katja Luther

03/05/2020

04:25 PM bug #6970: MediaUtils.filterAndOrderMediaRepresentations perfers thumbnail MediaRepresentations ...
closing as all tests succeed Andreas Kohlbecker
04:25 PM bug #6970 (Closed): MediaUtils.filterAndOrderMediaRepresentations perfers thumbnail MediaReprese...
Andreas Kohlbecker
04:24 PM bug #7093 (Worksforme): choosing representation which best fits the available size for taxon prof...
I could not reproduce this issue with the test cases implemented in commit:84331f40
A research in the old emails did...
Andreas Kohlbecker
04:00 PM bug #7093 (In Progress): choosing representation which best fits the available size for taxon pro...
Andreas Müller
12:36 PM bug #7093: choosing representation which best fits the available size for taxon profile picture n...
Ok, I will test with these sizes .... Andreas Kohlbecker
12:34 PM bug #7093: choosing representation which best fits the available size for taxon profile picture n...
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Andreas Kohlbecker wrote:
> > > Thank you for pointing this ...
Andreas Müller
12:32 PM bug #7093: choosing representation which best fits the available size for taxon profile picture n...
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Thank you for pointing this out.
> > Have only the thumbnai...
Andreas Kohlbecker
12:28 PM bug #7093: choosing representation which best fits the available size for taxon profile picture n...
Andreas Kohlbecker wrote:
> Thank you for pointing this out.
> Have only the thumbnails been adapted or also the l...
Andreas Müller
12:26 PM bug #7093 (Feedback): choosing representation which best fits the available size for taxon profil...
Thank you for pointing this out.
Have only the thumbnails been adapted or also the large images? Do you know more a...
Andreas Kohlbecker
12:03 PM bug #7093: choosing representation which best fits the available size for taxon profile picture n...
Andreas Kohlbecker wrote:
> Andreas Kohlbecker wrote:
> > This is a duplicate of the issue #6970
>
> Not really,...
Andreas Müller
11:24 AM bug #7093 (Worksforme): choosing representation which best fits the available size for taxon prof...
Andreas Kohlbecker wrote:
> This is a duplicate of the issue #6970
Not really, since the problem in #6970 is exac...
Andreas Kohlbecker
11:20 AM bug #7093 (Duplicate): choosing representation which best fits the available size for taxon profi...
This is a duplicate of the issue #6970 Andreas Kohlbecker
03:57 PM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Characte...
It still does not work for me. In rem_conf_am I added a 3. term to Structure tree "Test" via Structre Tree Editor but... Andreas Müller
03:57 PM Revision 84331f40 (cdmlib): ref #6970 fixing bug related to undefined values and adding test for ...
Andreas Kohlbecker
03:47 PM feature request #8044: Add "Move to..." menu to term editor
Please decide what can/should be fixed now and what better will be fixed after refactoring the term editors. Andreas Müller
03:46 PM feature request #8044: Add "Move to..." menu to term editor
Terms and vocabularies are not clearly distinguished now in the search dialog. Especially because vocabularies are sh... Andreas Müller
03:44 PM feature request #8044: Add "Move to..." menu to term editor
Andreas Müller wrote:
> When moving a term to another parent which is part of another vocabulary the term disappears...
Andreas Müller
03:43 PM feature request #8044: Add "Move to..." menu to term editor
When moving a term to another parent which is part of another vocabulary the term disappears in the UI. Only closing ... Andreas Müller
03:36 PM feature request #8044: Add "Move to..." menu to term editor
Pressing cancel results in a warning "you have to select one single term". Cancel should not generate warning as noth... Andreas Müller
03:33 PM feature request #8044 (Feedback): Add "Move to..." menu to term editor
Vocabulary search is an exact search now while term search is a "contains"-search. The later is what is more expected... Andreas Müller
03:25 PM feature request #8749 (Closed): Add proposalProvider to AbstractComboElement
Takes time to test everywhere but as far as I remember from using nightly during the last weeks I do not remember a p... Andreas Müller
03:19 PM feature request #8688 (Closed): Make OriginalSourceBase.cdmSource visible in TaxEditor
I can't test for CdmBase as there is no class implementing the ICdmSource interface yet which is not identifiable.
...
Andreas Müller
02:47 PM bug #8825 (Closed): Name features are shown in menu of factual data view of taxa when no preferen...
Difficult to test (and not spending too much time). But it looks like it works correctly. Reopen otherwise if users c... Andreas Müller
02:43 PM feature request #8861 (Feedback): Sorted feature states
Generally this works well. Only the sorting is currently case sensitiv which IMO should not be case.
Please decide...
Andreas Müller
02:31 PM feature request #8624: Add abbrev title cache to search in bulk editor
Does not yet work for TaxonName.fullTitleCache though the fulltitlecache seems to be the one that is shown in the fir... Andreas Müller
02:26 PM feature request #8624 (Feedback): Add abbrev title cache to search in bulk editor
Works well for TeamOrPersonBase and Reference.
Andreas Müller
02:17 PM bug #8878: Author selection dialog does not work on abbrev author title
I assigned to 5.14 as I think correct handling of dialogues is base functionality in the meanwhile and errors should ... Andreas Müller
02:16 PM bug #8878 (New): Author selection dialog does not work on abbrev author title
I tried to select an author for a reference via Reference-Detail View-select author dialogue.
Search on authors wo...
Andreas Müller
02:11 PM bug #8877 (New): New->Reference menu should be sorted
in bulk editor, but currently is not:
![](picture605-1.png)
Andreas Müller
02:03 PM bug #8847: Name in Source is added always when moving description from one taxon to another
English translation "Set name in source automatically" differs from German translation.
Also source should sources...
Andreas Müller
01:59 PM bug #8847: Name in Source is added always when moving description from one taxon to another
Moving with name in taxon navigator does not work. Name is not set afterwords. Andreas Müller
01:49 PM bug #8847 (Feedback): Name in Source is added always when moving description from one taxon to an...
The order in the menus is not always the same. I guess move without name setting should be first, move with name sett... Andreas Müller
01:43 PM Revision daffb8de (taxeditor): ref
Andreas Kohlbecker
01:42 PM Revision 00145989 (cdmlib): ref #6970 MediaUtils: restoring removed method
Andreas Kohlbecker
12:05 PM Revision c3475048 (cdmlib): revert 1bfcbbafdbce6e . Tests are still not always running.
Andreas Müller
11:55 AM task #8868 (Closed): Bump Jackson dependencies to >= 2.9.10.1
Katja Luther
11:55 AM task #8868: Bump Jackson dependencies to >= 2.9.10.1
this seems to be fixed. Katja Luther
11:41 AM task #8130 (In Progress): Check if related feature data is cleared when supported facts type is c...
I think the status should be In process and we should discuss how it should be handled in general because it should b... Katja Luther
11:39 AM task #8130: Check if related feature data is cleared when supported facts type is changed
can you please check and set the correct status for the ticket? Andreas Müller
11:40 AM feature request #8862 (Closed): move search result to the bottom of the navigator part
Seems to work Andreas Müller
11:22 AM feature request #8852: Improve TaxEditor startup options
Note: Das pwds vergessen werden, kann ich persönlich nicht nachvollziehen, obwohl ich auch mit vielen verschiedenen S... Andreas Müller
11:21 AM feature request #8852: Improve TaxEditor startup options
AK:
* 1. (Test-)Automatisierung
* 2. arbeiten mit einer cdmlib-remote-webapp instanz an http://localhost:<port>/ ...
Andreas Müller
11:20 AM feature request #8852: Improve TaxEditor startup options
AM:
was sind denn die Usecases um die es geht. Mein persönlicher ist, möglichst schnell eine der von mir häufig ve...
Andreas Müller
11:20 AM feature request #8852: Improve TaxEditor startup options
AK:
Das Passwort wird zwar im Taxeditor gespeichert aber das funktioniert nicht immer zuverlässig und nicht in all...
Andreas Müller
11:19 AM feature request #8852: Improve TaxEditor startup options
ich finde den Vorschlag auch interessant. Pwd bräuchte man nicht unbedingt mitgeben, dass speichert er ja automatisch... Andreas Müller
11:09 AM Revision eaeba65c (cdmlib): ref #6970 MediaUtils.filterAndOrderMediaRepresentations with improved...
Andreas Kohlbecker
11:09 AM Revision b61d8614 (cdmlib): ref #8867 iiif REST service controller correctly choosing thumbnail a...
Andreas Kohlbecker
10:50 AM feature request #8876 (New): nom. & gen. cons.
ERS (an WGB, NK, WHK, AM, KL, Nick):
im Editor finde ich in meinem drop-down-Menü für nomenklatorische Status die ...
Andreas Müller
10:48 AM Revision 52db4e57 (taxeditor): revert contextRefresh implementation
Katja Luther
10:46 AM Revision 736d82ea (taxeditor): ref #8047: adapt column width to length of header label
Katja Luther
10:27 AM Revision 69bb9d71 (taxeditor): ref #8562: add supplemental data subtree to ui part
Katja Luther
10:19 AM feature request #8875 (New): Filter data portal by taxonomic rank
For some data portal (e.g. caryophyllales genera and lichenes genera) it is a requirement to filter taxa by rank (e.g... Andreas Müller
09:46 AM Revision f18e2af7 (taxeditor): ref #8047: fix handling of integer preference values
Katja Luther
09:40 AM bug #8874 (New): move taxon is reverted when taxon is edited afterwards
mail W.B.:
ein merkwürdiger Bug – ist mir schon mehrfach aufgefallen, aber ich habe ihn nicht so recht dokumentier...
Katja Luther

03/04/2020

02:13 PM Revision 0eb94f0f (taxeditor): ref #8868 adding jetty-security to copy dependencies
Andreas Kohlbecker
02:13 PM Revision 912c7f60 (taxeditor): comment on module build order
Andreas Kohlbecker
12:49 PM Revision e0c50456 (taxeditor): fix uuid and titleCache display
Katja Luther
12:35 PM bug #6970 (In Progress): MediaUtils.filterAndOrderMediaRepresentations perfers thumbnail MediaRe...
Andreas Müller wrote:
> This ticket (by description and by old title) is about handling the "no filter" case. Not su...
Andreas Kohlbecker
11:27 AM bug #6970 (Feedback): MediaUtils.filterAndOrderMediaRepresentations perfers thumbnail MediaRepre...
This ticket (by description and by old title) is about handling the "no filter" case. Not sure if the new title still... Andreas Müller
10:21 AM bug #6970: MediaUtils.filterAndOrderMediaRepresentations perfers thumbnail MediaRepresentations ...
This issue is due to problems in the algorithm implemented in `MediaUtils.filterAndOrderMediaRepresentations()`. The... Andreas Kohlbecker
10:26 AM feature request #8867 (In Progress): media list services as iiif manifest service
Andreas Kohlbecker
08:18 AM Revision ef302cd8 (taxeditor): fixing potential NPE
Andreas Kohlbecker
08:11 AM Revision add676c0 (taxeditor): ref #8868 adding jetty-io to plugin
Andreas Kohlbecker
08:07 AM Revision 088ca9bf (taxeditor): ref #8868 adding jetty-http to plugin
Andreas Kohlbecker

03/03/2020

05:20 PM Revision 1bfcbbaf (cdmlib): unignore StructuredDescriptionAggregationTest to test
... if this was really the reason for tests failing from time to time Andreas Müller
04:19 PM task #5022 (Closed): Check for dependencies from codehaus.org
Andreas Kohlbecker
04:17 PM task #5022: Check for dependencies from codehaus.org
even if commented the CodehausMuleRepository can be removed. `yjp-controller-api-redist@2015-build-15086` is availabl... Andreas Kohlbecker
02:12 PM task #5022 (Feedback): Check for dependencies from codehaus.org
As this code is commented since 2015 I did not consider it as a real repository definition. It does not contradict "A... Andreas Müller
04:18 PM Revision 907243b7 (cdmlib): ref #5022 removing commented CodehausMuleRepository
Andreas Kohlbecker
02:49 PM Revision 3cb4daac (taxeditor): update navigator after import
Katja Luther
02:33 PM Revision 75784d91 (cdmlib): using https for jboss repo
Andreas Kohlbecker
02:17 PM Revision 5e4edfe4 (cdmlib): updating jboss repo to new location: repository.jboss.org
Andreas Kohlbecker
12:50 PM Revision 14a8f9d9 (cdmlib): ref #5022 remove spring repositories
Andreas Müller
12:50 PM Revision cc2aa0f9 (cdmlib): ref #5022 remove (commented) itextpdf repository
Andreas Müller
12:50 PM Revision 6954c32f (cdmlib): cleanup
Andreas Müller
12:50 PM Revision ad22fcb8 (cdmlib): add transaction to state in ExcelImportBase
Andreas Müller
12:49 PM Revision 931981a7 (cdmlib): add some user types to noHandle for referencingObjects search
Andreas Müller
12:49 PM Revision 6c9ddf58 (cdmlib): cleanup
Andreas Müller
12:03 PM Revision fe6bf49c (taxeditor): ref #8047: code cleaning
Katja Luther
11:59 AM Revision f858de14 (taxeditor): avoid NPE and code cleaning
Katja Luther
11:54 AM Revision 7ef1ca71 (taxeditor): ref #8047: status order in drop down - continue
Katja Luther
11:54 AM Revision 44f3402d (taxeditor): fix open classification handler
Katja Luther
11:38 AM Revision 0eccefea (taxeditor): ref #8047: status order in drop down
Katja Luther
11:38 AM Revision ec05977a (cdmlib): ref #8047: add preferencePredicate for status order
Katja Luther
11:09 AM Revision b4801728 (cdmlib): fixing multiple bugs which have been reported by SpotBugs
Andreas Kohlbecker
10:28 AM Revision 33d62613 (cdm-server): ref #8868 upgrading to jetty 9.4.26.v20200117
Andreas Kohlbecker

03/02/2020

09:43 PM task #5022 (In Progress): Check for dependencies from codehaus.org
There are still the repository definition in cdmlib/pom.xml:
~~~
./pom.xml-227- <name>JBoss Repository</na...
Andreas Kohlbecker
02:38 PM task #5022 (Closed): Check for dependencies from codehaus.org
Andreas Müller
02:38 PM task #5022: Check for dependencies from codehaus.org
Andreas Kohlbecker wrote:
> itextpdf/5.0.6 has the AGPL3 license which is a free license https://mvnrepository.com/a...
Andreas Müller
02:06 PM task #5022: Check for dependencies from codehaus.org
itextpdf/5.0.6 has the AGPL3 license which is a free license https://mvnrepository.com/artifact/com.itextpdf/itextpdf... Andreas Kohlbecker
09:25 PM task #8868 (Feedback): Bump Jackson dependencies to >= 2.9.10.1
waiting for Katja checking the if the last problem in the taxeditor project is caused by something else:
Eigentlic...
Andreas Kohlbecker
01:47 PM task #8868 (In Progress): Bump Jackson dependencies to >= 2.9.10.1
Andreas Kohlbecker
06:16 PM Revision 2174ddff (taxeditor): ref #8868 configuring jetty-maven-plugin to support packaging 'ecl...
Andreas Kohlbecker
06:15 PM bug #8873 (Closed): eu.etaxonomy.taxeditor: maven-clean runs before maven-install-plugin and del...
Andreas Kohlbecker
04:57 PM bug #8873: eu.etaxonomy.taxeditor: maven-clean runs before maven-install-plugin and deletes the ...
build with maven 3.6.0
~~~
[INFO] ----------------< eu.etaxonomy:eu.etaxonomy.taxeditor >-----------------
[INFO...
Andreas Kohlbecker
04:49 PM bug #8873 (In Progress): eu.etaxonomy.taxeditor: maven-clean runs before maven-install-plugin an...
Andreas Kohlbecker
04:48 PM bug #8873: eu.etaxonomy.taxeditor: maven-clean runs before maven-install-plugin and deletes the ...
Jenkins fails with the same error when http://int.e-taxonomy.eu/jenkins/job/taxeditor-INTEGRATION/ is build with mave... Andreas Kohlbecker
04:42 PM bug #8873: eu.etaxonomy.taxeditor: maven-clean runs before maven-install-plugin and deletes the ...
my local environment:
~~~
Apache Maven 3.6.0
Maven home: /usr/share/maven
Java version: 1.8.0_131, vendor: Orac...
Andreas Kohlbecker
04:39 PM bug #8873 (Closed): eu.etaxonomy.taxeditor: maven-clean runs before maven-install-plugin and del...
this does happen when running `mvn install` locally, strangly this seems not to be a problem for the http://int.e-tax... Andreas Kohlbecker
05:36 PM Revision 959179bc (taxeditor): ref #8868, ref #8873 fixing build lifecycle for maven 3.6.*
Andreas Kohlbecker
03:50 PM bug #8866: LazyInitializationException (LIE) in portal/taxon/{uuid}
Andreas Müller wrote:
> The above error leads to the message "taxon does not exist" in the dataportal. This is incor...
Andreas Kohlbecker
03:47 PM bug #8866: LazyInitializationException (LIE) in portal/taxon/{uuid}
The above error leads to the message "taxon does not exist" in the dataportal. This is incorrect error handling. The ... Andreas Müller
03:39 PM Revision 5c3f2528 (taxeditor): ref #8868 managing jetty-version as property from parent pom v=9.4...
Andreas Kohlbecker
03:20 PM bug #8872 (New): TermEditor does not use selected language
When e.g. selecting Russion as preferred language the term editor still shows terms in English while the details view... Andreas Müller
03:14 PM bug #8417: LazyInitializationException in TermDTO for media
This needs to be discussed. Eager Loading is generally very critical for 1:n relations as objects may be duplicated.
...
Andreas Müller
02:22 PM Revision aea75171 (taxeditor): ref #8868 updating jetty to 9.4.26.v20200117
Andreas Kohlbecker
02:11 PM task #8679 (Closed): Further unify description aggregation methods
Open issues moved to new ticket #8871 Andreas Müller
02:08 PM task #8871 (New): Remaining issues to unify description aggregation methods
Copied from #8679
* merge source handling
* discuss dataset handling for distribution aggregation (DONE for Descr...
Andreas Müller
01:59 PM bug #8839 (Feedback): Role misses toString method
Andreas Müller
01:55 PM bug #8815 (In Progress): Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao
Andreas Müller
01:30 PM bug #8870 (New): UI issues for term translation wizard
* delete button beside drop down
* drop down as wide as the text field
* to be continued
Katja Luther
01:12 PM feature request #8869 (New): Multilanguage Support for terms in editor
mail AM:
Anders als bei z.B. textual Facts ist es bei den Termen nicht möglich, sofort eine nicht-englische Repres...
Katja Luther
10:37 AM Revision 029ea231 (taxeditor): ref #8868 updating jetty to 9.2.9.v20150224
Andreas Kohlbecker

02/29/2020

12:22 PM feature request #8867: media list services as iiif manifest service
Open issues:
* Only thumbnail images in the manifest. This is caused by `TaxonPortalController.getMediaForTaxon(.....
Andreas Kohlbecker
12:07 PM Revision 2340b64f (cdmlib): ref #8867 basic implementation of iiif REST service controller
Andreas Kohlbecker
10:41 AM Revision cec7510d (cdmlib): ref #8868 & ref #5083 bumping jackson to 2.10.2
Andreas Kohlbecker
10:29 AM task #8868: Bump Jackson dependencies to >= 2.9.10.1
The maven-jetty plugins in `cdmlib-remote-webapp` and in `cdm-vaadin` are on `9.4.15.v20190215` Andreas Kohlbecker
10:26 AM task #8868: Bump Jackson dependencies to >= 2.9.10.1
Andreas Kohlbecker wrote:
> **IMPORTANT:** the newer jackson jars are JEP-238 Jar, therefore it is needed to upgrade...
Andreas Kohlbecker
10:24 AM task #8868: Bump Jackson dependencies to >= 2.9.10.1
**IMPORTANT:** the newer jackson jars are JEP-238 Jar, therefore it is needed to upgrade all usages of Jetty to 9.4.9... Andreas Kohlbecker
10:21 AM task #8868 (Closed): Bump Jackson dependencies to >= 2.9.10.1
Currently we are using v2.6.5 which has multiple highly severe security issues: https://github.com/cybertaxonomy/cdml... Andreas Kohlbecker

02/28/2020

05:18 PM feature request #8867 (Closed): media list services as iiif manifest service
for providing universalviewer with manifest files (see #5083) all services returning media lists like `portal/taxon/{... Andreas Kohlbecker
05:02 PM Revision 9b614b06 (cdm-dataportal): ref #5083 cleaning up
Andreas Kohlbecker
04:47 PM Revision a6f91032 (cdm-dataportal): ref #5083 universalviewer modules setup and layout
Andreas Kohlbecker
03:22 PM Revision 794a8f08 (cdmlib-apps): implement commandline TreeIndexUpdaterActivator
Andreas Müller
02:44 PM Revision a1f7edc0 (cdm-dataportal): ref #5083 integrating universalviewer as jQuery plugin
Andreas Kohlbecker
01:41 PM task #8853 (Resolved): Import Aizoaceae from Kew World Checklist to Caryo spp
Applied in changeset commit:cdmlib-apps|26f92af1e605055a6917725ec2b6a81808e7467a. Andreas Müller
01:40 PM Revision c46cd1b0 (cdmlib-apps): some change
Andreas Müller
10:55 AM bug #8866 (Closed): LazyInitializationException (LIE) in portal/taxon/{uuid}

http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/b15ec01d-b909-4143-b197-e752b6f34d5b.json?subtree=876a...
Andreas Kohlbecker
10:11 AM feature request #8865: more external-links to be implemented
Hallo,

zusätzliche Treffer anzuzeigen, die nicht dem eigentlichen Interesse des Nutzers entsprechen ist viel ...
Andreas Kohlbecker
10:11 AM feature request #8865: more external-links to be implemented
Hallo Andreas,
Sehr gut. Bezueglich der namensbasierten Suche, liegen da schon Erfahrungen vor? Mit Einbeziehung d...
Andreas Kohlbecker
10:11 AM feature request #8865: more external-links to be implemented
Die Anforderung "Die Suche sollte dabei über die Namen gehen" heißt, dass eine namensbasierte Suche stattfinden soll.... Andreas Kohlbecker
09:56 AM feature request #8865 (New): more external-links to be implemented
Hallo Andreas,

wie im Caryophyllales-Portal, möchten wir auch im neuen E+M-Portal gerne ein Sidebar mit exter...
Andreas Kohlbecker
10:05 AM feature request #7416: OriginalSourceBase.links should be shown in DataPortal
Andreas Kohlbecker wrote:
> First of all we need to discuss how and where the links are to be shown.
>
> * in the...
Andreas Müller
09:52 AM feature request #7416: OriginalSourceBase.links should be shown in DataPortal
First of all we need to discuss how and where the links are to be shown.
* in the sidebar, e.g. in the external li...
Andreas Kohlbecker

02/27/2020

08:13 PM Revision 51dcb6fb (cdmlib): fix abcd import with missing collectorsFieldNumber - continue
Katja Luther
02:24 PM task #8047: Remaining issues in TaxDistributionEditor
Katja Luther wrote:
> * Sort status in drop down alphabetically
>
> I think a few weeks ago we decided to sort th...
Andreas Müller
01:46 PM task #8047: Remaining issues in TaxDistributionEditor
* Sort status in drop down alphabetically
I think a few weeks ago we decided to sort the status by the id in Vocab...
Katja Luther
01:15 PM Revision 5b5a0393 (cdmlib): fix abcd import for missing collectorsFieldNumber
Katja Luther
01:12 PM Revision 0017e5a7 (cdmlib): ref #8047: add preferencePredicate NUmberOfStatus
Katja Luther
12:53 PM Revision 1e4fc9a9 (taxeditor): ref #8047: add preference for number of visible status in drop dow...
Katja Luther
12:52 PM Revision 8cf9ef9f (taxeditor): ref #8047: add preference for number of visible status in drop down
Katja Luther
11:28 AM Revision c822b3aa (taxeditor): ref #8047: missing WorkbenchEventConstants changes
Katja Luther
10:57 AM Revision f47160a6 (taxeditor): ref #8047: show taxon name in details - continue
Katja Luther
10:23 AM Revision 51270199 (taxeditor): ref #8047: show taxon name in details
Katja Luther

02/26/2020

01:17 PM bug #8174: First test fails if term data is in loaded DataSet
I think we should go for option 3) that is to remove TestingTermInitializer and to rely only on the Datasets being lo... Andreas Kohlbecker
11:56 AM task #8834: use TaxonNodeDto instead of UuidAndTitleCache
Please also have a look to #8833 and adapt the related code accordingly. Also check if #8833 can be closed afterwards. Andreas Müller
11:45 AM bug #6241: fix java doc problems in projects
we split this ticket to split workload => #8864 Andreas Müller
11:44 AM bug #8864 (New): fix java doc problems in projects in vaadin, cdmserver and dataportal
for futher information see #6241 Andreas Müller
11:02 AM Revision 05b66422 (taxeditor): disabling details for distribution editor
Katja Luther
10:18 AM Revision 68c216b6 (taxeditor): code cleaning
Katja Luther
10:16 AM Revision 68278258 (taxeditor): ref #8047: avoid NPE in filter
Katja Luther
10:14 AM Revision 7015f9f1 (taxeditor): use uuid instead of entities for specimen selection
Katja Luther
10:13 AM Revision 880c592f (taxeditor): show abbrev title in agent bulk editor
Katja Luther
10:12 AM Revision b6f0f1ad (taxeditor): code cleaning
Katja Luther
10:05 AM Revision 1c7218c8 (taxeditor): ref #8047: adapt menu item for multi select
Katja Luther
10:03 AM Revision 7953b892 (taxeditor): avoid potential NPE
Katja Luther
09:51 AM Revision 53dde875 (cdmlib): ref #8047: open list of taxa in distribution editor
Katja Luther
09:44 AM Revision 0c3b1419 (taxeditor): correct handling of checklist perspective preference - continue
Katja Luther
09:25 AM Revision 2d8cbf51 (taxeditor): correct handling of checklist perspective preference
Katja Luther
09:10 AM Revision a093f2b1 (taxeditor): ref #8047: improve handling of factual data view when switching views
Katja Luther
09:04 AM Revision 466d5ea5 (taxeditor): ref #8047: allow multiselect for open distribution editor - continue
Katja Luther

02/25/2020

03:19 PM EDIT Platform Etablierung task #8863 (New): Create full documentation on multilingual setup of the Data Portal
The documentation can be based on the information found in #5911, [[edit:CdmDataportalMultilingual]], ... Andreas Kohlbecker
02:58 PM Revision 97014a35 (cdm-dataportal): adding translation file for russian
Andreas Kohlbecker
12:21 PM Revision 884aefac (taxeditor): ref #8047: allow multiselect for open distribution editor
Katja Luther
12:15 PM Revision ab40ab80 (taxeditor): ref #8047: handling of factual data view when switching between na...
Katja Luther
10:54 AM Revision 9b792c34 (taxeditor): smaller changes in distribution aggregation ui
Katja Luther
10:29 AM feature request #8861 (Resolved): Sorted feature states
Applied in changeset commit:taxeditor|6dc61e9186aa6d2657c56d87e6a394c306330dfd. Katja Luther
09:56 AM feature request #8861 (Closed): Sorted feature states
mail AM.
ich gebe gerade testweise States für das Feature Status in die Flora Greece ein und sehe, dass die Liste ...
Katja Luther
10:29 AM Revision 6dc61e91 (taxeditor): fix #8861: sort terms in state combo
Katja Luther
10:20 AM feature request #8862 (Resolved): move search result to the bottom of the navigator part
Applied in changeset commit:taxeditor|ffcad03f739ca3035437e895aaea9f28b7a4a595. Katja Luther
10:16 AM feature request #8862 (Closed): move search result to the bottom of the navigator part
Katja Luther
10:20 AM Revision ffcad03f (taxeditor): fix #8862: move search window to the bottom of the navigator
Katja Luther
 

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