Activity

From 12/16/2019 to 01/14/2020

01/08/2020

05:48 PM task #8786 (Resolved): Display of mean value with min max: Done!
The trivial case where only one value exists or when Min = Max or when TypicalLowerBoundary = TypicalUpperBo... Andreas Kohlbecker
03:32 PM task #8786: Display of mean value with min max: ich habe in der Ticketbeschreibung nochmals alles zusammengefasst Andreas Kohlbecker
03:22 PM task #8786: Display of mean value with min max: Sieht gut aus.

Kleine Anmerkung: ich bin mir nicht sicher, ob wir immer eine Sample Size haben. Gerade bei de... Andreas Kohlbecker
03:22 PM task #8786: Display of mean value with min max: Hallo,

Könnten wir den bis-Strick jeweils in die Klammer hinein nehmen, das ist die gebräuchlichere Variante?... Andreas Kohlbecker
03:21 PM task #8786: Display of mean value with min max: Achso, ne, wollten wir nicht eckige Klammern um den Mittelwert? Und die Frage steht noch aus, ob in die eckigen Klamm... Andreas Kohlbecker
03:21 PM task #8786: Display of mean value with min max: um sicher zu gehen, dass wir jetzt wirklich vom Selben sprechen.

Das Beispiel aus der Ticket Beschreibung (1.... Andreas Kohlbecker
10:28 AM task #8786: Display of mean value with min max: Hallo Norbert,

wie gesagt, finde ich unschön, dass es sprachabhängig ist (in einem Deutschen Portal müssten w... Andreas Kohlbecker
10:27 AM task #8786: Display of mean value with min max: Hallo Andreas,

ja, hab ich auch so gefunden, wäre ich auch mit einverstanden. Ich hatte "mean" ausgeschrieben... Andreas Kohlbecker
10:27 AM task #8786: Display of mean value with min max: Hallo,

vielleicht ist „x bar“ x̄ noch besser. Das sollte mathematisch eindeutig sein.
μ wird wohl auch man... Andreas Kohlbecker
10:26 AM task #8786: Display of mean value with min max: Hallo Andreas,

Mittelwert: ja, solche Details der Darstellung hatte wir noch gar nicht besprechen können.
... Andreas Kohlbecker
10:25 AM task #8786: Display of mean value with min max: Hallo,

es kann gut sein, dass die Schreibweise mit dem Mittelwert zwischen den Min und Max Werten nicht abges... Andreas Kohlbecker
03:14 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Eine Funktion zum runden oder trunkieren nach signifikanten Stellen gibt es in php nicht aber in diesem Stackoverflow... Andreas Kohlbecker
02:59 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Hallo,

der Vorschlag die Differenz Max - Min für die Berechnung der signifikanten Stellen des Mittelwertes ... Andreas Kohlbecker
02:57 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Eigentlich ist das entscheidende ja, wie weit min und max von einander entfernt sind. Bei 98-190 reicht eine Zahl ohn... Andreas Kohlbecker
02:56 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Weitere Beispiele für die Ticket-Beschreibung Andreas Kohlbecker
01:29 PM bug #8800 (Resolved): If supplemental data view shows reference it is not possible to select another reference: Applied in changeset commit:cdmlib|db7b0ee79b966b68a1d2958214303d4b101f1022. Andreas Müller
12:32 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference: I checked Walters log-file (see below). So he also got an error in ReferenceDaoHibernateImpl.getUuidAndTitle but in a... Andreas Müller
12:14 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference: AM:
Das klingt ein bisschen wie der Fehler den ich gestern mit dem nicht möglichen Aufrufen des Referenzdialoges f... Andreas Müller
09:31 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select another reference: mail WB:
Hallo,
ich habe ein merkwürdiges Problem beim Editieren einer Referenz, und zwar sowohl aus dem Bulk Edi... Katja Luther
12:19 PM bug #8801: Deselected menu items are not reactivated in navigator: Being resolved this can go into 5.12, correct? Andreas Müller
11:15 AM bug #8801 (Resolved): Deselected menu items are not reactivated in navigator: Katja Luther
11:15 AM bug #8801: Deselected menu items are not reactivated in navigator: the problem seems to be that the menu items are submenu items of "edit subtree" and when for all menu items visibilit... Katja Luther
09:33 AM bug #8801 (Closed): Deselected menu items are not reactivated in navigator: mail AM:
noch ein Problem. Wenn ich ein Multiselect auf Taxa im Navigator mache wird das Set for Subtree Menü di... Katja Luther

01/07/2020

04:50 PM feature request #8787: Improve layout for ExactValue on Description Pages: Andreas Kohlbecker wrote:
> Implemented.
>
> I did not change the separator to semicolon since we are using the ... Andreas Müller
04:35 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages: Implemented.
I did not change the separator to semicolon since we are using the comma already for separating all ... Andreas Kohlbecker
04:30 PM feature request #8787: Improve layout for ExactValue on Description Pages: implemented in commit:cdm-dataportal|88e622d25 Andreas Kohlbecker
03:48 PM feature request #8787 (In Progress): Improve layout for ExactValue on Description Pages: Andreas Kohlbecker
03:47 PM feature request #8787: Improve layout for ExactValue on Description Pages: [norbert wrote]
ich sehe keine Notwendigkeit einen exact value besonders zu kennzeichnen, bin für semikolon-separ... Andreas Kohlbecker
03:39 PM feature request #8787 (Feedback): Improve layout for ExactValue on Description Pages: Rauten stehen nach meinem Verständniss üblicherweise für "Nummer" oder "Anzahl", damit eine "Exact Value" zu kennzeic... Andreas Kohlbecker
04:42 PM feature request #8798 (Resolved): description page: Show character hierarchy: done Andreas Kohlbecker
01:45 PM feature request #8798 (Resolved): description page: Show character hierarchy: The hierarchy of the characters in the character tree should be visualized in the description table Andreas Kohlbecker
04:16 PM task #8799 (New): [PESI][E+M] [Discuss] Use reference author instead of (sec)-reference for (Species)ExpertName: Other databases in PESI use only the expert name (e.g. http://www.eu-nomen.eu/portal/taxon.php?GUID=urn:lsid:marinesp... Andreas Müller
03:42 PM task #8786: Display of mean value with min max: [Norbert wrote:]
Noch zu der Darstellung der Werte mit Mittelwert. Wenn ich mich richtig erinnere, waren wir uns e... Andreas Kohlbecker
11:49 AM bug #8774 (In Progress): Reimplement term tree editors to implement the general save strategy: Katja Luther

01/06/2020

12:31 PM bug #8797 (Resolved): Navigator tree collapse after moving taxon node: please review Katja Luther
12:28 PM bug #8797 (Closed): Navigator tree collapse after moving taxon node: mail Nadja:
Liebe alle,
ich habe einen Bug festgestellt, der das Arbeiten extrem verlangsamt:
Verschiebt man... Katja Luther

12/27/2019

04:48 PM task #8796 (New): [PESI][DW] Handling of Taxon.SourceFk: In SQL Script the Taxon.SourceFk was filled the following way:
* for taxa from ERMS, FauEU and IF it was filled by... Andreas Müller
11:09 AM bug #8508 (In Progress): [PESI][ERMS] ERMS import pipeline validation: Andreas Müller
09:31 AM task #8795 (New): [PESI][DW] CHECK all fields on correct handling of merged data in PESI export: Sometimes merged data needs to be pipe separated or something else. All fields need to be checked if they handle this... Andreas Müller

12/26/2019

11:33 PM task #8794 (New): [PESI][Merge]+[DW] Check all SQL scripts related to merging: Check all SQL script which are not single DB specific on Y:\BDI\PESI\sh\DBs2PESI\vCDM Andreas Müller
08:07 PM bug #8793 (New): [E+M] In-Ref authors should have full (non-abbreviated) author title without initials: This is a E+M requirement for nom. ref. formatting Andreas Müller
06:41 PM task #7976 (Closed): [PESI][ERMS] Erms taxon import: Andreas Müller
05:02 PM task #8792: Issues to have in mind for ERMS import: Open issues from comparing SQL scripts (Y:\BDI\PESI\sh\DBs2PESI\vCDM\):
!!!! Do check again because maybe I checke... Andreas Müller
12:06 PM task #8792 (New): Issues to have in mind for ERMS import: The functioning of the ERMS import (and PESI export) is explained at: [[Erms_mapping]]
## General information
O... Andreas Müller

12/23/2019

12:09 PM feature request #8441 (Closed): Add FeatureState class: I think we can close this ticket. Andreas Müller

12/20/2019

04:28 PM bug #8791: Measurement units are not assigned to quantitative data in matrix: This urgent as the current implementation creates incomplete data that needs to be repaired manually (see #8790) Andreas Müller
04:17 PM bug #8791 (Closed): Measurement units are not assigned to quantitative data in matrix: In a first quick fix we should implement it such that if the feature has exactly 1 recommended measurment unit this u... Andreas Müller
04:16 PM bug #8790 (Closed): Update measurement units for existing quantitative data missing a unit: This is how to find them:
~~~
SELECT f.id featureId, f.titleCache, mu.id unitId, mu.titleCache unit, deb.*
FROM... Andreas Müller
03:55 PM feature request #8789 (New): How can we semantically handle characters like "partial inflorescence arrangement - distance 1st to 2nd bract": This is currently a quantitative character in Cactaceae which uses
structure: partial inflorescence
Property: arr... Andreas Müller
03:26 PM bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore: Problem description:
Das Problem ist, dass hier auf die geclonten (archivierten) Specimen Descriptions verlinkt wi... Andreas Müller
03:01 PM feature request #8787: Improve layout for ExactValue on Description Pages: This should only be applicable for the specimen pages themselves: http://test.e-taxonomy.eu/dataportal/preview/greece... Andreas Müller
03:00 PM feature request #8787: Improve layout for ExactValue on Description Pages: A maybe temporary example ist http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/descriptio... Andreas Müller
02:56 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages: Currently formatting is not nice:
![](picture908-1.png)
A first suggestion from an Email:
Da sollten wir uns... Andreas Müller
02:59 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]: Handling for Exact Value is still open, but handled now in own ticket #8787 Andreas Müller

12/19/2019

05:14 PM bug #8739 (Resolved): remaining issues for description detail page: AS far as I see, this ticket is either solved or remaining issues are copied to new tickets.
Therefore I suggest c... Andreas Kohlbecker
05:08 PM task #8786 (Feedback): Display of mean value with min max: Andreas Kohlbecker
05:08 PM task #8786 (Resolved): Display of mean value with min max: > abgesehen davon, dass die Mittelwertangabe zwischen Min und Max unüblich ist, ... Eine bessere Darstellung wär... Andreas Kohlbecker
03:00 PM feature request #8769 (New): Biocase import configuration should be shown when clicking on import button: Andreas Kohlbecker wrote:
> I fear that just opening the import config dialog does not really help.
> I suggest to ... Andreas Müller
02:59 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I find it very useful for debugging that computed description... Andreas Kohlbecker
02:28 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: Andreas Kohlbecker wrote:
> I find it very useful for debugging that computed descriptions can be viewed and modifie... Andreas Müller
02:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix: Katja Luther wrote:
> this should be possible in character matrix. I have to test this.
yes, it should be handled... Andreas Müller
02:35 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix: this should be possible in character matrix. I have to test this. Katja Luther
11:58 AM bug #8785: Move functionality of buttons to context menu of the character matrix: Also this one I put to current milestone for same reason as #8784 Andreas Müller
11:58 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix: The issue is described in #8784 but I created a new ticket as it is as deleting a specimen description (which is hand... Andreas Müller
02:30 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor: As this is a critical issue I suggest to put it into 5.13. (5.12 is probably not possible as the task is difficult). ... Andreas Müller
02:23 PM bug #8784: Deleting a specimen description not possible: fixing the delete handling in deletehandler of the factual data view. Now the deletion of descriptions and descriptio... Katja Luther
11:57 AM bug #8784 (In Progress): Deleting a specimen description not possible: this is already in process because I already found this problem while working on #8782 Katja Luther
11:54 AM bug #8784: Deleting a specimen description not possible: I put this into the current milestone because it is a blocker for undoing incorrect/unwanted data entries. Andreas Müller
11:53 AM bug #8784 (Closed): Deleting a specimen description not possible: Currently it seems to be impossible to delete a specimen description.
In the specimen LIST editor specimen descrip... Andreas Müller
02:21 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements: Looks fine now Andreas Müller
01:51 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements: Andreas Müller wrote:
> Now the semicolon is missing everywhere, it should be removed ONLY at the end:
>
Proble... Andreas Kohlbecker
01:19 PM feature request #8781: Descriptions (aggregated): futher improvements: An example can be found here: http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/taxon/8718... Andreas Müller
01:19 PM feature request #8781 (Feedback): Descriptions (aggregated): futher improvements: Andreas Müller
01:19 PM feature request #8781: Descriptions (aggregated): futher improvements: Now the semicolon is missing everywhere, it should be removed ONLY at the end:
![](picture967-1.png)
The capita... Andreas Müller

12/18/2019

04:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: I find it very useful for debugging that computed descriptions can be viewed and modified in the editor. Can't we all... Andreas Kohlbecker
02:43 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor: This was observed with a locally running cdmlib-remote-webapp instance configured with 700 MB of Heap:
![](pic... Andreas Kohlbecker
01:39 PM bug #8782 (Closed): Delete a description included in a CdmSource should not be possible: mail AM:
ich habe gerade DescriptionBase gelöscht (aus dem Facts View heraus), die noch verlinkt waren über eine C... Katja Luther
01:24 PM bug #8780: Repair sortindex does not work on TermTree index: This should be fixed. Please review. Andreas Müller
11:57 AM bug #8780 (Resolved): Repair sortindex does not work on TermTree index: Applied in changeset commit:cdmlib|dad659722b698863a2dee711782748b0de216a71. Andreas Müller
09:16 AM bug #8780 (Closed): Repair sortindex does not work on TermTree index: Andreas Müller
12:21 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements: ticket complete Andreas Kohlbecker
12:08 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements: Hallo Andreas,
1. am Ende der aggregated descriptions gibt es derzeit im noch ein überflüssiges Komma. Könntest du... Andreas Kohlbecker
11:22 AM feature request #7981 (In Progress): Add configuration UI for matrix description aggregation: Katja Luther

12/17/2019

03:55 PM bug #8566 (Rejected): Recursive aggregation for common parent taxon does not work if not in data set: This is expected behavior, not a bug IMO. However, with the UI aggregation trigger we may have more possibilities to ... Andreas Müller
03:47 PM feature request #8686: Support CdmLink sources in bibliography: An example could be shown here: http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/taxon/... Andreas Müller
03:46 PM feature request #8686 (Feedback): Support CdmLink sources in bibliography: Andreas Kohlbecker wrote:
> **Note**: The links to the taxa are having a fragment which directly focuses on the "Agg... Andreas Müller
03:40 PM bug #8779 (Resolved): Description page: use render_taxon_or_name() for creating the page and description title and taxon links: after harmonization the top of the page now looks like
![](picture451-1.png)
If more detailed display of the ta... Andreas Kohlbecker
03:20 PM bug #8779 (Closed): Description page: use render_taxon_or_name() for creating the page and description title and taxon links: in `compose_description_table()` the `render_taxon_or_name()` method must be used for portal wide consistend display ... Andreas Kohlbecker
03:35 PM feature request #8777: Make visiblity of CDM Source configurable: Andreas Müller wrote:
> ... hmm, maybe an even better solution is to show the field only if data exists. Is this pos... Andreas Müller
03:08 PM feature request #8777: Make visiblity of CDM Source configurable: ... hmm, maybe an even better solution is to show the field only if data exists. Is this possible? Andreas Müller
03:00 PM feature request #8777 (Resolved): Make visiblity of CDM Source configurable: see #8688, for some projects the CDM Source should not be visible (because not used). This is similar to ID in Source... Andreas Müller
03:15 PM feature request #8688 (Feedback): Make OriginalSourceBase.cdmSource visible in TaxEditor: The current solution shows titleCache+uuid for identifiable entities. This is too much. For now we need only the titl... Andreas Müller
03:12 PM feature request #8778 (New): Have explicit subclass for CdmSourceLink sources: copied from #8688: Possible open questions related: do we want to have a new subclass for OriginalSourceBase which on... Andreas Müller
02:27 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon: I think we can close this. If problems occurr we may reopen or immediately fix. Andreas Müller
02:14 PM feature request #8044 (Feedback): Add "Move to..." menu to term editor: * For this usecase the title and the description in the term selection wizard needs to be adapted. It should be somet... Andreas Müller
01:56 PM bug #7994 (Duplicate): Implement allowDuplicates for term trees in TaxEditor: This is a duplicate for #8477, #8776 Andreas Müller
01:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor: Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:47 PM feature request #8476 (In Progress): Implement support for TermCollection.isFlat in TaxEditor: Only the flag is editable until now so I put this back to InProgress. Andreas Müller
01:53 PM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees: Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:50 PM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees: Only editing the flag is implemented until now so I put it back to InProgress Andreas Müller
01:52 PM bug #8776: Open issues for TermCollection.allowDuplicates handling in TaxEditor: Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:25 PM bug #8776 (Closed): Open issues for TermCollection.allowDuplicates handling in TaxEditor: * ~~The error message currently looks like an unhandled error. The message should only inform about the fact that dup... Andreas Müller
01:41 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor: Generally this works but there are some open issues. I moved them all to a new ticket: #8776 Andreas Müller
12:19 PM feature request #8242 (Closed): Implement filtered combo boxes for state selection in CharacterMatrix: This is generally implemented. There are follow up tickets like #8254 and #8775 Andreas Müller
12:14 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix: This seems to work now. There are issues with the general (rapid) data entry of categorical data into the matrix. The... Andreas Müller
12:12 PM feature request #8775 (In Progress): Improve (rapid) data entry into characater matrix for categorical data: Quantitative data can be entered into the matrix very fast by only using the keyboard via return, left, right and num... Andreas Müller
11:50 AM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors: Andreas Müller
11:44 AM bug #8751: Replace saveOrUpdate() in AbstractTermTreeEditor: This is probably more or less a duplicate for #8774 and will be fixed by #8774 Andreas Müller
11:41 AM bug #8663 (Duplicate): LIE when trying to save a tree node: This is probably a duplicate for #8744 Andreas Müller
11:38 AM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor: The LIE itself seems to be fixed by switching to merge() but there are still very serious issues related to saving of... Andreas Müller
11:28 AM bug #8744: LazyInitializationException (LIE) saving the Character Editor: Andreas Müller wrote:
> hmm, it does not really seem to be the problem, but I found that there seems no session to b... Andreas Müller
11:36 AM bug #8774 (Closed): Reimplement term tree editors to implement the general save strategy: Currently term trees save changes in the hierarchy (including new terms/nodes) immediately in the DB. This is against... Andreas Müller
11:24 AM bug #8748 (Closed): Supported state vocabularies should be ordered: This is fixed and is a very nice and important feature. Andreas Müller
11:22 AM feature request #8755 (Closed): Show all structure/property trees in CharacterEditor: Follow up issues are moved to extra tickets so we can close this one. Andreas Müller
11:20 AM feature request #8773 (New): [DISCUSS] Allow editing structure and properties tree in Character Editor: copied from #8755#note-3:
"with the current state of the structure tree it is sometimes wanted to extend this tree... Andreas Müller
10:23 AM feature request #8772 (New): Recognize Character duplicates: Characters constructed from structure and property (and structural modifier) can be recognized as duplicates by this ... Andreas Müller
09:10 AM feature request #8771 (Feedback): display of average value with precision so that it differs from min and max by one digit: do you agree with my suggestion? Andreas Kohlbecker
09:07 AM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit: The display of decimal place for average value should be adjusted so that it differs from the values on min and max (... Andreas Kohlbecker

12/16/2019

05:05 PM feature request #8769 (Feedback): Biocase import configuration should be shown when clicking on import button: I fear that just opening the import config dialog does not really help.
I suggest to solve this problem differently:... Andreas Kohlbecker
02:11 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking on import button: The configuration dialog should be opened everytime the import button is clicked.
At the moment the configuration ... Katja Luther
04:58 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]: ready for review Andreas Kohlbecker
01:41 PM bug #8766 (Resolved): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]: Applied in changeset commit:cdm-dataportal|f63479aed323653e11922bb4dc3865537c5904cb. Andreas Kohlbecker
04:33 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found: fixed Andreas Kohlbecker
04:33 PM bug #8770 (Resolved): NameControllers responds with all entities when name uuid is not found: Applied in changeset commit:cdmlib|cc3ce6e30c74308b6697f6007d03d37b00cce8ff. Andreas Kohlbecker
04:25 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found: When the uuid in `portal/name/c0b7aa13-301d-4a0c-a8c6-843e96c34ba8/taxonNameDescriptions.json` is not found in the db... Andreas Kohlbecker

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