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From 12/16/2019 to 01/14/2020

01/14/2020

04:27 PM Revision 207beb84 (cdmlib-apps): cleanup
Andreas Müller
04:23 PM Revision bddc23ae (cdmlib-apps): minor changes to PESI Activators
Andreas Müller
04:15 PM Revision 567f10b2 (cdmlib-apps): latest changes to GreeceImageActivator
Andreas Müller
04:13 PM Revision 3f131c46 (cdmlib-apps): ref #1447 handle null and ERMS pseudo taxa and some minor changes
Andreas Müller
03:56 PM Revision cc5e8c6e (cdmlib): fixing bugs in SwaggerIT and StaticSwaggerApiDoc
Andreas Kohlbecker
03:53 PM Revision a3f91025 (cdmlib): fixing bug in descriptions/elementsByType/{classSimpleName} - marker ...
Andreas Kohlbecker
03:21 PM bug #8684 (Closed): ITaxonService.findTaxaByName misses initStrategy Parameter
Andreas Kohlbecker
03:21 PM bug #8684: ITaxonService.findTaxaByName misses initStrategy Parameter
also tested on t edit-test and confirmed that the service is working now
~~~
http http://test.e-taxonomy.eu/cdmse...
Andreas Kohlbecker
01:56 PM bug #8684 (Resolved): ITaxonService.findTaxaByName misses initStrategy Parameter
the webservice is now working, tested with:
~~~
http :8081/portal/taxon/doFindByNameParts.json genusOrUninomial=...
Andreas Kohlbecker
02:06 PM Revision 8867b63b (cdm-dataportal): ref #8771 fixing bug in statistical value processing
Andreas Kohlbecker
01:41 PM Revision 76b9084e (cdmlib): ref #8684 fixing bean collection initialization in TaxonDaoHibernateI...
Andreas Kohlbecker
11:31 AM feature request #8802 (In Progress): Implement flowering period for Flora of Cyprus
Andreas Müller
11:31 AM feature request #8802 (Closed): Implement flowering period for Flora of Cyprus
(was "Blütezeiten")
This includes a new DescriptionElement subclass "TermporalData" and a new TimePeriod subclass ...
Andreas Müller

01/13/2020

05:32 PM bug #8684 (In Progress): ITaxonService.findTaxaByName misses initStrategy Parameter
testing the web service (locally with the caryophlalles_spp database):
~~~
http :8081/portal/taxon/doFindByNamePa...
Andreas Kohlbecker
05:11 PM bug #8719 (Closed): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048...
as this problem did no longer occur we can close this issue. Andreas Kohlbecker
05:10 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
Andreas Kohlbecker
05:07 PM feature request #8686 (Closed): Support CdmLink sources in bibliography
fragment removed from links - closing ticket. Andreas Kohlbecker
05:06 PM Revision cbe9b085 (cdm-dataportal): ref #8686 removing fragment from link
Andreas Kohlbecker
04:56 PM feature request #8771: display of average value with precision so that it differs from min and m...
By now we are having quite good solution, and I suggest to close this issue. Please move further requirements and wis... Andreas Kohlbecker
04:16 PM feature request #8771: display of average value with precision so that it differs from min and m...
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > 3 Verbesserungsvorschläge:
> >
> Derzeit ist u.A. vor al...
Andreas Kohlbecker
04:06 PM feature request #8771: display of average value with precision so that it differs from min and m...
Andreas Müller wrote:
> 3 Verbesserungsvorschläge:
>
> * Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg...
Andreas Kohlbecker
04:54 PM Revision 8726bde3 (cdm-dataportal): ref #8771 documenting phpUnit test execution
Andreas Kohlbecker
04:49 PM Revision dd80884c (cdm-dataportal): ref #8771 finetuning of statistical values display and more t...
Andreas Kohlbecker
04:35 PM Revision 6b99e174 (cdmlib-apps): ref #1447 underscore for parent diff file
Andreas Müller
03:11 PM Revision 0e1b6929 (cdm-dataportal): ignoring all target folders
Andreas Kohlbecker
03:11 PM Revision fd411b34 (cdmlib-apps): ref #1447 remove unncessary casts and cleanup
Andreas Müller
03:11 PM Revision 145a5e49 (cdm-dataportal): removing modules/cdm_dataportal/target/
Andreas Kohlbecker
03:07 PM Revision c3fb3bba (cdm-dataportal): ref #8771 more test cases
Andreas Kohlbecker
02:48 PM Revision a163fed9 (cdmlib-apps): ref #1447 add utf8 to writer
Andreas Müller
02:20 PM Revision 29d3d2ce (cdm-dataportal): ref #8771 phpunit improving test suite setup
Andreas Kohlbecker
02:18 PM Revision 7c808239 (cdm-dataportal): ref #8771 phpunit improving test suite setup
Andreas Kohlbecker
02:05 PM Revision 778b241c (cdm-dataportal): ref #8771 phpunit improving test suite setup
Andreas Kohlbecker
01:52 PM Revision 458948d0 (cdm-dataportal): ref #8771 phpunit improving test suite setup
Andreas Kohlbecker
01:22 PM Revision 2e07d351 (cdm-dataportal): ref #8771 phpunit logging in junit xml format - renaming logfile
Andreas Kohlbecker
01:08 PM Revision b2ecf616 (cdm-dataportal): ref #8771 phpunit logging in junit xml format
Andreas Kohlbecker
08:23 AM Revision 76c0847f (cdm-dataportal): ref #8771 downgrading to phpUnit 5 for backwards compatibilit...
Andreas Kohlbecker

01/12/2020

01:05 AM Revision ab6f97de (cdmlib-apps): cleanup
Andreas Müller
01:02 AM Revision 874a38f5 (cdmlib-apps): ref #8643 fix FaEu destination 2
Andreas Müller

01/10/2020

02:20 PM Revision 2e91751e (cdmlib): ref #1447 add StringComparator
Andreas Müller
01:01 PM Revision b5b0fcf5 (cdmlib-apps): ref #1447 improve PesiFindIdenticalNamesActivator
Andreas Müller
12:38 PM Revision c938072f (cdmlib): ref #1447 fix findIdenticalName function
Andreas Müller
12:07 PM Revision fa9ef8c4 (cdmlib): minor
Andreas Müller
10:55 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select anothe...
I could not reproduce this error anymore, so we can close it. Katja Luther
10:54 AM bug #8801: Deselected menu items are not reactivated in navigator
please review Katja Luther
10:19 AM Revision 20553b7e (cdmlib-apps): revert wrong merge changes on findIdenticalNameActivator
Katja Luther
10:10 AM Revision c13878e2 (cdmlib-apps): merge changes
Katja Luther

01/09/2020

05:29 PM Revision df2eb131 (cdm-dataportal): ref #8771 unit test for significant figures of statistical va...
Andreas Kohlbecker
05:28 PM Revision fa718a2c (cdm-dataportal): fixing PHPUnit setup for php 7 and documenting its usage with...
Andreas Kohlbecker
01:17 PM Revision b22a7fb6 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
01:17 PM Revision ce7a0180 (cdmlib): smaller changes in ABCD import
Katja Luther
01:12 PM feature request #8771: display of average value with precision so that it differs from min and m...
Andreas Müller wrote:
> Die Zeile verstehe ich nicht:
>
> $precision += $precision < 0 ? - 1 : 1;
>
> Waru...
Andreas Kohlbecker
12:30 PM feature request #8771: display of average value with precision so that it differs from min and m...
Die Zeile verstehe ich nicht:
$precision += $precision < 0 ? - 1 : 1;
Warum muss die Richtung der Präzision...
Andreas Müller
12:04 PM feature request #8771: display of average value with precision so that it differs from min and m...
Example on test/cactaceae:
http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/descript...
Andreas Müller
12:01 PM feature request #8771 (Resolved): display of average value with precision so that it differs from...
Applied in changeset commit:cdm-dataportal|8480271c782d1cce2fffdb4cb95b0f30d9367712. Andreas Kohlbecker
11:47 AM feature request #8771: display of average value with precision so that it differs from min and m...
Is there an example page available? Andreas Müller
11:46 AM feature request #8771 (Feedback): display of average value with precision so that it differs from...
3 Verbesserungsvorschläge:
* Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg=min(=max) bzw. StdAbw und Va...
Andreas Müller
11:29 AM feature request #8771: display of average value with precision so that it differs from min and m...
Hallo,

der Fall x=0 ist der Fall min=max. => avg=min(=max). Also trivial, die Dezimalstellen sollten die gleich...
Andreas Kohlbecker
11:09 AM feature request #8771: display of average value with precision so that it differs from min and m...
please review Andreas Kohlbecker
11:08 AM feature request #8771 (Resolved): display of average value with precision so that it differs from...
Applied in changeset commit:cdm-dataportal|793df79047e8716b03d8ba09feeec495d5f410aa. Andreas Kohlbecker
01:08 PM Revision bd04ba61 (taxeditor): fix NPE during exception handling
Katja Luther
12:53 PM Revision 86fd29ff (cdmlib): ref #1447 change duplicate finding of names from sec to source refere...
Andreas Müller
12:00 PM Revision 8480271c (cdm-dataportal): fix #8771 removing comment
Andreas Kohlbecker
11:08 AM Revision 793df790 (cdm-dataportal): fix #8771 display of average value with minimum amount of sig...
Andreas Kohlbecker

01/08/2020

06:02 PM Revision 2f4646e0 (cdm-dataportal): ref #8786 renaming all min_max_*() functions to statistical_v...
Andreas Kohlbecker
05:48 PM task #8786 (Resolved): Display of mean value with min max
Done!
The trivial case where only one value exists or when Min = Max or when TypicalLowerBoundary = TypicalUpperBo...
Andreas Kohlbecker
03:32 PM task #8786: Display of mean value with min max
ich habe in der Ticketbeschreibung nochmals alles zusammengefasst Andreas Kohlbecker
03:22 PM task #8786: Display of mean value with min max
Sieht gut aus.

Kleine Anmerkung: ich bin mir nicht sicher, ob wir immer eine Sample Size haben. Gerade bei de...
Andreas Kohlbecker
03:22 PM task #8786: Display of mean value with min max
Hallo,

Könnten wir den bis-Strick jeweils in die Klammer hinein nehmen, das ist die gebräuchlichere Variante?...
Andreas Kohlbecker
03:21 PM task #8786: Display of mean value with min max
Achso, ne, wollten wir nicht eckige Klammern um den Mittelwert? Und die Frage steht noch aus, ob in die eckigen Klamm... Andreas Kohlbecker
03:21 PM task #8786: Display of mean value with min max
um sicher zu gehen, dass wir jetzt wirklich vom Selben sprechen.

Das Beispiel aus der Ticket Beschreibung (1....
Andreas Kohlbecker
10:28 AM task #8786: Display of mean value with min max
Hallo Norbert,

wie gesagt, finde ich unschön, dass es sprachabhängig ist (in einem Deutschen Portal müssten w...
Andreas Kohlbecker
10:27 AM task #8786: Display of mean value with min max
Hallo Andreas,

ja, hab ich auch so gefunden, wäre ich auch mit einverstanden. Ich hatte "mean" ausgeschrieben...
Andreas Kohlbecker
10:27 AM task #8786: Display of mean value with min max
Hallo,

vielleicht ist „x bar“ x̄ noch besser. Das sollte mathematisch eindeutig sein.
μ wird wohl auch man...
Andreas Kohlbecker
10:26 AM task #8786: Display of mean value with min max
Hallo Andreas,

Mittelwert: ja, solche Details der Darstellung hatte wir noch gar nicht besprechen können.
...
Andreas Kohlbecker
10:25 AM task #8786: Display of mean value with min max
Hallo,

es kann gut sein, dass die Schreibweise mit dem Mittelwert zwischen den Min und Max Werten nicht abges...
Andreas Kohlbecker
05:40 PM Revision cd3ea2e8 (cdm-dataportal): ref #8739 updated explanatory text for statistical values
Andreas Kohlbecker
05:32 PM Revision 2eb6acb7 (cdm-dataportal): ref #8786 improved display of min, max, mean and other statis...
Andreas Kohlbecker
05:31 PM Revision b736d380 (cdm-dataportal): typos in README
Andreas Kohlbecker
03:14 PM feature request #8771: display of average value with precision so that it differs from min and m...
Eine Funktion zum runden oder trunkieren nach signifikanten Stellen gibt es in php nicht aber in diesem Stackoverflow... Andreas Kohlbecker
02:59 PM feature request #8771: display of average value with precision so that it differs from min and m...

Hallo,

der Vorschlag die Differenz Max - Min für die Berechnung der signifikanten Stellen des Mittelwertes ...
Andreas Kohlbecker
02:57 PM feature request #8771: display of average value with precision so that it differs from min and m...
Eigentlich ist das entscheidende ja, wie weit min und max von einander entfernt sind. Bei 98-190 reicht eine Zahl ohn... Andreas Kohlbecker
02:56 PM feature request #8771: display of average value with precision so that it differs from min and m...
Weitere Beispiele für die Ticket-Beschreibung Andreas Kohlbecker
01:29 PM bug #8800 (Resolved): If supplemental data view shows reference it is not possible to select anot...
Applied in changeset commit:cdmlib|db7b0ee79b966b68a1d2958214303d4b101f1022. Andreas Müller
12:32 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference
I checked Walters log-file (see below). So he also got an error in ReferenceDaoHibernateImpl.getUuidAndTitle but in a... Andreas Müller
12:14 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference
AM:
Das klingt ein bisschen wie der Fehler den ich gestern mit dem nicht möglichen Aufrufen des Referenzdialoges f...
Andreas Müller
09:31 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select anothe...
mail WB:
Hallo,
ich habe ein merkwürdiges Problem beim Editieren einer Referenz, und zwar sowohl aus dem Bulk Edi...
Katja Luther
01:28 PM Revision db7b0ee7 (cdmlib): fix #8800 fix NPE in Reference.getUuidAndTitle
Andreas Müller
12:19 PM bug #8801: Deselected menu items are not reactivated in navigator
Being resolved this can go into 5.12, correct? Andreas Müller
11:15 AM bug #8801 (Resolved): Deselected menu items are not reactivated in navigator
Katja Luther
11:15 AM bug #8801: Deselected menu items are not reactivated in navigator
the problem seems to be that the menu items are submenu items of "edit subtree" and when for all menu items visibilit... Katja Luther
09:33 AM bug #8801 (Closed): Deselected menu items are not reactivated in navigator
mail AM:
noch ein Problem. Wenn ich ein Multiselect auf Taxa im Navigator mache wird das Set for Subtree Menü di...
Katja Luther
11:07 AM Revision caffc76b (taxeditor): ref #8801: disabled submenu items should be visible again
Katja Luther

01/07/2020

06:19 PM Revision 4f67e0f9 (cdmlib): temporarily ignore SortIndexUpdaterWrapperTest
Andreas Müller
06:19 PM Revision 8b3c844e (cdmlib): cleanup and javadoc
Andreas Müller
04:50 PM feature request #8787: Improve layout for ExactValue on Description Pages
Andreas Kohlbecker wrote:
> Implemented.
>
> I did not change the separator to semicolon since we are using the ...
Andreas Müller
04:35 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages
Implemented.
I did not change the separator to semicolon since we are using the comma already for separating all ...
Andreas Kohlbecker
04:30 PM feature request #8787: Improve layout for ExactValue on Description Pages
implemented in commit:cdm-dataportal|88e622d25 Andreas Kohlbecker
03:48 PM feature request #8787 (In Progress): Improve layout for ExactValue on Description Pages
Andreas Kohlbecker
03:47 PM feature request #8787: Improve layout for ExactValue on Description Pages
[norbert wrote]
ich sehe keine Notwendigkeit einen exact value besonders zu kennzeichnen, bin für semikolon-separ...
Andreas Kohlbecker
03:39 PM feature request #8787 (Feedback): Improve layout for ExactValue on Description Pages
Rauten stehen nach meinem Verständniss üblicherweise für "Nummer" oder "Anzahl", damit eine "Exact Value" zu kennzeic... Andreas Kohlbecker
04:42 PM feature request #8798 (Resolved): description page: Show character hierarchy
done Andreas Kohlbecker
01:45 PM feature request #8798 (Resolved): description page: Show character hierarchy
The hierarchy character of the characters in the chracter tree should be visualized in the description table Andreas Kohlbecker
04:37 PM Revision fa094d60 (cdm-dataportal): ref #8739 table caption to the top an with smaller font
Andreas Kohlbecker
04:33 PM Revision 2d78d276 (cdm-dataportal): ref #8787 uncommenting previously implemented improved displa...
Andreas Kohlbecker
04:16 PM task #8799 (New): [PESI][E+M] [Discuss] Use reference author instead of (sec)-reference for (Spec...
Other databases in PESI use only the expert name (e.g. http://www.eu-nomen.eu/portal/taxon.php?GUID=urn:lsid:marinesp... Andreas Müller
04:02 PM Revision 88e622d2 (cdm-dataportal): ref #8739 indenting description table entries by character hi...
Andreas Kohlbecker
03:42 PM task #8786: Display of mean value with min max
[Norbert wrote:]
Noch zu der Darstellung der Werte mit Mittelwert. Wenn ich mich richtig erinnere, waren wir uns e...
Andreas Kohlbecker
02:27 PM Revision 209feb13 (cdm-dataportal): ref #8739 indenting description table entries by chraracter h...
Andreas Kohlbecker
01:32 PM Revision e95b14dd (cdm-dataportal): ref #8739 loading missing name for taxa in render_taxon_or_na...
Andreas Kohlbecker
12:40 PM Revision 92e522db (cdm-dataportal): ref #8739 description sources in alphabetical order
Andreas Kohlbecker
11:59 AM Revision 31d293b1 (cdm-dataportal): ref #8739 description table header left aligned (affects all ...
Andreas Kohlbecker
11:49 AM bug #8774 (In Progress): Reimplement term tree editors to implement the general save strategy
Katja Luther
11:20 AM Revision a651a0c4 (cdmlib): cdm light fix export of areas without level
Katja Luther

01/06/2020

05:01 PM Revision 34743ac7 (cdmlib-apps): ref #8508, ref #8577 treeindex test for E+M validation and commo...
Andreas Müller
04:57 PM Revision bc416076 (cdmlib-apps): ref #1447 cleanup FaunaEuErmsFindIdenticalNamesActivator
Andreas Müller
12:31 PM bug #8797 (Resolved): Navigator tree collapse after moving taxon node
please review Katja Luther
12:28 PM bug #8797 (Closed): Navigator tree collapse after moving taxon node
mail Nadja:
Liebe alle,
ich habe einen Bug festgestellt, der das Arbeiten extrem verlangsamt:
Verschiebt man...
Katja Luther
12:30 PM Revision b0947131 (taxeditor): ref #8797: only refresh parent node after moving node
Katja Luther
09:51 AM Revision 50caf951 (cdm-dataportal): remove : from values of default description elements for spec...
Katja Luther

12/28/2019

04:10 PM Revision 2eee7850 (cdmlib-apps): ref #1444 minor fixes for ErmsImportActivator
Andreas Müller
04:09 PM Revision 85c9a0d8 (cdmlib-apps): ref #2717 fix sourceFk handling for pure names
Andreas Müller
04:08 PM Revision 19743136 (cdmlib-apps): ref #8508 fix and finalize taxon status (cache) validation
Andreas Müller
11:45 AM Revision 3d6c7bfc (cdmlib-apps): ref #1444, ref #8508, ref #8509 fix ERMS taxon status handling
Andreas Müller
10:48 AM Revision f859201a (cdmlib-apps): ref #8508 further improvements to ERMS validation
Andreas Müller

12/27/2019

11:16 PM Revision 0e601fdc (cdmlib-apps): ref #8509 fix sourceFk handling in PESI taxon export
Andreas Müller
11:14 PM Revision 744bd412 (cdmlib-apps): ref #8509 improve tagged names handling in PESI export (ERMS and...
Andreas Müller
11:11 PM Revision c0411992 (cdmlib-apps): ref #1444, ref #7976 fix erronous subgenus formatting in ERMS
Andreas Müller
11:09 PM Revision c12d2903 (cdmlib-apps): ref #1444, ref #7976 better logging for unhandled unacceptReason
Andreas Müller
10:49 PM Revision 15d48661 (cdmlib-apps): cleanup
Andreas Müller
04:48 PM task #8796 (New): [PESI][DW] Handling of Taxon.SourceFk
In SQL Script the Taxon.SourceFk was filled the following way:
* for taxa from ERMS, FauEU and IF it was filled by...
Andreas Müller
11:09 AM bug #8508 (In Progress): [PESI][ERMS] ERMS import pipeline validation
Andreas Müller
09:48 AM Revision 2abd2851 (cdmlib-apps): ref #8508 improve treeindex validation and remove source type 'i...
Andreas Müller
09:39 AM Revision 8f402cc0 (cdmlib-apps): ref #1444, ref #2871, ref #7976 improve authorship handling for MAN
Andreas Müller
09:37 AM Revision 751d08a3 (cdmlib-apps): ref #1444 remove 2 taxon status checks from ErmsTaxonImportValid...
- status is now handled via id and tu_accfinal, not via taxonStatus field Andreas Müller
09:31 AM task #8795 (New): [PESI][DW] CHECK all fields on correct handling of merged data in PESI export
Sometimes merged data needs to be pipe separated or something else. All fields need to be checked if they handle this... Andreas Müller

12/26/2019

11:33 PM task #8794 (New): [PESI][Merge]+[DW] Check all SQL scripts related to merging
Check all SQL script which are not single DB specific on Y:\BDI\PESI\sh\DBs2PESI\vCDM Andreas Müller
09:12 PM Revision a12e9e83 (cdmlib-apps): ref #2104 remove fixme from unused PesiNoteSourceExport_Old
Andreas Müller
08:07 PM bug #8793 (New): [E+M] In-Ref authors should have full (non-abbreviated) author title without ini...
This is a E+M requirement for nom. ref. formatting Andreas Müller
07:29 PM Revision dd68b822 (cdmlib-apps): ref #8508 latest changes
Andreas Müller
07:28 PM Revision e706b35f (cdmlib-apps): cleanup
Andreas Müller
07:21 PM Revision 58968197 (cdmlib-apps): ref #1444, ref #7976 improve misapplication handling in ERMS import
Andreas Müller
06:41 PM task #7976 (Closed): [PESI][ERMS] Erms taxon import
Andreas Müller
05:02 PM task #8792: Issues to have in mind for ERMS import
Open issues from comparing SQL scripts (Y:\BDI\PESI\sh\DBs2PESI\vCDM\):
!!!! Do check again because maybe I checke...
Andreas Müller
12:06 PM task #8792 (New): Issues to have in mind for ERMS import
The functioning of the ERMS import (and PESI export) is explained at: [[Erms_mapping]]
## General information
O...
Andreas Müller
01:59 PM Revision d4c6ec84 (cdmlib-apps): ref #8508 minor and cleanup
Andreas Müller
01:56 PM Revision 0d26082d (cdmlib-apps): ref #8509 handle new ERMS quality status "Thematic Editor"
Andreas Müller
01:55 PM Revision bd4c4dee (cdmlib-apps): ref #1444, #8509 fix pipeline handling in ErmsImportActivator
Andreas Müller
01:54 PM Revision 2a2eb365 (cdmlib-apps): ref #1444 replace tu_acctaxon by tu_accfinal
Andreas Müller

12/24/2019

01:52 AM Revision 8419d12a (cdmlib-apps): ref #8508 latest changes to ERMS validation
Andreas Müller
01:51 AM Revision 98d96cf6 (cdmlib-apps): cleanup
Andreas Müller
01:45 AM Revision c44a40e4 (cdmlib-apps): ref #8509 fix taxonStatus export for ERMS
Andreas Müller

12/23/2019

09:37 PM Revision 0cd4c1a9 (cdmlib-apps): cleanup
Andreas Müller
09:36 PM Revision 7373dcf3 (cdmlib-apps): ref #2717 remove publish marker and uuidMisappliedCommonName mar...
Andreas Müller
09:32 PM Revision ec9963cf (cdmlib-apps): ref #2717 add 2nd source to EuroMedSourceActivator
Andreas Müller
08:56 PM Revision ea77fefa (cdmlib-apps): ref #1444 handle missing sourceUse
Andreas Müller
08:31 PM Revision 4c575756 (cdmlib-apps): ref #1444 minor changes and cleanup
Andreas Müller
08:30 PM Revision bd1bdb28 (cdmlib-apps): ref #1444 some changes due to upgrade to ERMS v2019
Andreas Müller
08:28 PM Revision e4598bb4 (cdmlib-apps): ref #1444 add new ERMS source and rename old one
Andreas Müller
12:09 PM feature request #8441 (Closed): Add FeatureState class
I think we can close this ticket. Andreas Müller
10:00 AM Revision 5d17ab2a (cdmlib-apps): cleanup and move isIgnoreNull from base configurator to BMconfig...
Andreas Müller
09:58 AM Revision cb5cbca9 (cdmlib): remove ignoreNull from ImportConfiguratorBase
Andreas Müller

12/22/2019

11:08 PM Revision 2d7259ef (cdmlib-apps): ref #2717 some updates to PESI export
Andreas Müller
11:06 PM Revision e5364977 (cdmlib-apps): ref #8577 improve E+M export validation
Andreas Müller
11:01 PM Revision 0420a928 (cdmlib): cleanup
Andreas Müller

12/20/2019

04:28 PM bug #8791: Measurement units are not assigned to quantitative data in matrix
This urgent as the current implementation creates incomplete data that needs to be repaired manually (see #8790) Andreas Müller
04:17 PM bug #8791 (Closed): Measurement units are not assigned to quantitative data in matrix
In a first quick fix we should implement it such that if the feature has exactly 1 recommended measurment unit this u... Andreas Müller
04:16 PM bug #8790 (Closed): Update measurement units for existing quantitative data missing a unit
This is how to find them:
~~~
SELECT f.id featureId, f.titleCache, mu.id unitId, mu.titleCache unit, deb.*
FROM...
Andreas Müller
03:55 PM feature request #8789 (New): How can we semantically handle characters like "partial inflorescenc...
This is currently a quantitative character in Cactaceae which uses
structure: partial inflorescence
Property: arr...
Andreas Müller
03:26 PM bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore
Problem description:
Das Problem ist, dass hier auf die geclonten (archivierten) Specimen Descriptions verlinkt wi...
Andreas Müller
03:01 PM feature request #8787: Improve layout for ExactValue on Description Pages
This should only be applicable for the specimen pages themselves: http://test.e-taxonomy.eu/dataportal/preview/greece... Andreas Müller
03:00 PM feature request #8787: Improve layout for ExactValue on Description Pages
A maybe temporary example ist http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/descriptio... Andreas Müller
02:56 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages
Currently formatting is not nice:
![](picture908-1.png)
A first suggestion from an Email:
Da sollten wir uns...
Andreas Müller
02:59 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
Handling for Exact Value is still open, but handled now in own ticket #8787 Andreas Müller
10:08 AM Revision 69019789 (cdmlib): ref #8782: add isDeletable to descriptionService
Katja Luther

12/19/2019

12:31 AM Revision 4a2b3c5b (cdmlib): ref #8469 support reuse of quantitative characters in subbranches
Andreas Müller
05:14 PM bug #8739 (Resolved): remaining issues for description detail page
AS far as I see, this ticket is either solved or remaining issues are copied to new tickets.
Therefore I suggest c...
Andreas Kohlbecker
05:12 PM Revision 753a8083 (cdm-dataportal): ref #8739 description page better and stylable DOM
Andreas Kohlbecker
05:08 PM task #8786 (Feedback): Display of mean value with min max
Andreas Kohlbecker
05:08 PM task #8786 (Resolved): Display of mean value with min max

> abgesehen davon, dass die Mittelwertangabe zwischen Min und Max unüblich ist, ... Eine bessere Darstellung wär...
Andreas Kohlbecker
03:59 PM Revision 16ab19f1 (cdm-dataportal): ref #8781 first feature element starts with upper case letter...
Andreas Kohlbecker
03:00 PM feature request #8769 (New): Biocase import configuration should be shown when clicking on import...
Andreas Kohlbecker wrote:
> I fear that just opening the import config dialog does not really help.
> I suggest to ...
Andreas Müller
02:59 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I find it very useful for debugging that computed description...
Andreas Kohlbecker
02:28 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
Andreas Kohlbecker wrote:
> I find it very useful for debugging that computed descriptions can be viewed and modifie...
Andreas Müller
02:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix
Katja Luther wrote:
> this should be possible in character matrix. I have to test this.
yes, it should be handled...
Andreas Müller
02:35 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
this should be possible in character matrix. I have to test this. Katja Luther
11:58 AM bug #8785: Move functionality of buttons to context menu of the character matrix
Also this one I put to current milestone for same reason as #8784 Andreas Müller
11:58 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
The issue is described in #8784 but I created a new ticket as it is as deleting a specimen description (which is hand... Andreas Müller
02:30 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
As this is a critical issue I suggest to put it into 5.13. (5.12 is probably not possible as the task is difficult). ... Andreas Müller
02:23 PM bug #8784: Deleting a specimen description not possible
fixing the delete handling in deletehandler of the factual data view. Now the deletion of descriptions and descriptio... Katja Luther
11:57 AM bug #8784 (In Progress): Deleting a specimen description not possible
this is already in process because I already found this problem while working on #8782 Katja Luther
11:54 AM bug #8784: Deleting a specimen description not possible
I put this into the current milestone because it is a blocker for undoing incorrect/unwanted data entries. Andreas Müller
11:53 AM bug #8784 (Closed): Deleting a specimen description not possible
Currently it seems to be impossible to delete a specimen description.
In the specimen LIST editor specimen descrip...
Andreas Müller
02:21 PM Revision a776559e (taxeditor): ref #8784: fix deleteHandler for factual data
Katja Luther
02:21 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
Looks fine now Andreas Müller
01:51 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
Andreas Müller wrote:
> Now the semicolon is missing everywhere, it should be removed ONLY at the end:
>
Proble...
Andreas Kohlbecker
01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
An example can be found here: http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/taxon/8718... Andreas Müller
01:19 PM feature request #8781 (Feedback): Descriptions (aggregated): futher improvements
Andreas Müller
01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
Now the semicolon is missing everywhere, it should be removed ONLY at the end:
![](picture967-1.png)
The capita...
Andreas Müller
02:12 PM Revision bea70813 (cdm-dataportal): ref #8739 labels of CategoricalData and QuatitativeData stylable
Andreas Kohlbecker
01:50 PM Revision caf1ed73 (cdm-dataportal): ref #8781 restoring lost semicolons in description element st...
Andreas Kohlbecker
10:20 AM Revision 3db61e83 (cdm-dataportal): ref #8739 description page: improved dom and using stylesheet...
Andreas Kohlbecker
01:10 AM Revision 6f40bb03 (cdmlib): cleanup
Andreas Müller
01:10 AM Revision e04e5f03 (cdmlib): ref #8469 use correct handling for removeChildNode
Andreas Müller

12/18/2019

12:53 AM Revision ca83d76f (cdmlib): ref #8469 add useTaxonHierarchy for PolytomousKeyGenerator
Andreas Müller
12:51 AM Revision e667c033 (cdmlib): ref #8469 fix remove taxon node from taxon for TaxonNode.remove()
Andreas Müller
12:49 AM Revision af44169e (cdmlib): cleanup
Andreas Müller
05:03 PM Revision ad7fa57c (cdm-dataportal): ref #8739 description page: solving problems with unit displa...
Andreas Kohlbecker
04:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
I find it very useful for debugging that computed descriptions can be viewed and modified in the editor. Can't we all... Andreas Kohlbecker
02:43 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix ed...

This was observed with a locally running cdmlib-remote-webapp instance configured with 700 MB of Heap:
![](pic...
Andreas Kohlbecker
01:39 PM bug #8782 (Closed): Delete a description included in a CdmSource should not be possible
mail AM:
ich habe gerade DescriptionBase gelöscht (aus dem Facts View heraus), die noch verlinkt waren über eine C...
Katja Luther
01:24 PM bug #8780: Repair sortindex does not work on TermTree index
This should be fixed. Please review. Andreas Müller
11:57 AM bug #8780 (Resolved): Repair sortindex does not work on TermTree index
Applied in changeset commit:cdmlib|dad659722b698863a2dee711782748b0de216a71. Andreas Müller
09:16 AM bug #8780 (Closed): Repair sortindex does not work on TermTree index
Andreas Müller
01:11 PM Revision 7b8c575b (cdmlib): cleanup
Andreas Müller
01:00 PM Revision cc6c7d5e (cdmlib): cleanup
Andreas Müller
01:00 PM Revision 6c143263 (cdmlib): ref #8780 fix autowire issue for repository (workaround)
Andreas Müller
12:47 PM Revision 86f7ea85 (cdmlib): cleanup
Andreas Müller
12:43 PM Revision a483ffcd (cdmlib): ref #8780 test nodes recursive and generic
Andreas Müller
12:42 PM Revision 365cff58 (cdmlib): cleanup
Andreas Müller
12:41 PM Revision a2928800 (cdmlib): fix ConcurrentSessionTest testdata
Andreas Müller
12:21 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
ticket complete Andreas Kohlbecker
12:08 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
Hallo Andreas,
1. am Ende der aggregated descriptions gibt es derzeit im noch ein überflüssiges Komma. Könntest du...
Andreas Kohlbecker
12:20 PM Revision 2bc2b13e (cdm-dataportal): ref #8781 first feature element starts with upper case letter
Andreas Kohlbecker
12:18 PM Revision e425fd81 (cdmlib): cleanup
Andreas Müller
12:17 PM Revision 1d287b23 (cdmlib): ref #8780 reduce test dataset
Andreas Müller
12:09 PM Revision 2e5f796f (cdm-dataportal): ref #8781 removing semicolon from end of description
Andreas Kohlbecker
11:59 AM Revision 3076588b (cdmlib): ref #8780 add SortIndexUpdaterWrapperTest for term nodes
Andreas Müller
11:58 AM Revision b171b803 (cdmlib): ref #8780 cleanup SortIndexUpdaterWrapper
Andreas Müller
11:58 AM Revision 386112b5 (cdmlib): replace featureTreeService by termTreeService
Andreas Müller
11:57 AM Revision 0a165781 (cdmlib): cleanup
Andreas Müller
11:46 AM Revision 87aa88d6 (cdm-dataportal): ref #8739 aggregated description feature block: explainig bra...
Andreas Kohlbecker
11:22 AM feature request #7981 (In Progress): Add configuration UI for matrix description aggregation
Katja Luther
11:21 AM Revision 6722d9a5 (cdm-dataportal): ref #8739 description page: explainig bracketed numbers
Andreas Kohlbecker
09:47 AM Revision 1da7de81 (cdmlib): ref #8780 cleanup
Andreas Müller
09:47 AM Revision dad65972 (cdmlib): fix #8780 fix term node sortindex updater (TermNode->TermRelation)
Andreas Müller
09:36 AM Revision 558d4b79 (cdmlib): cleanup
Andreas Müller
09:26 AM Revision 61cfb399 (cdmlib): cleanup
Andreas Müller

12/17/2019

04:01 PM Revision 01e26d23 (taxeditor): ref #7981: remove aggregation call in wizard
Katja Luther
03:55 PM bug #8566 (Rejected): Recursive aggregation for common parent taxon does not work if not in data set
This is expected behavior, not a bug IMO. However, with the UI aggregation trigger we may have more possibilities to ... Andreas Müller
03:47 PM feature request #8686: Support CdmLink sources in bibliography
An example could be shown here: http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/taxon/... Andreas Müller
03:46 PM feature request #8686 (Feedback): Support CdmLink sources in bibliography
Andreas Kohlbecker wrote:
> **Note**: The links to the taxa are having a fragment which directly focuses on the "Agg...
Andreas Müller
03:42 PM Revision 20bfe15b (cdm-dataportal): fix #8779 harmonization of taxon display in descriptions
Andreas Kohlbecker
03:40 PM bug #8779 (Resolved): Description page: use render_taxon_or_name() for creating the page and desc...
after harmonization the top of the page now looks like
![](picture451-1.png)
If more detailed display of the ta...
Andreas Kohlbecker
03:20 PM bug #8779 (Closed): Description page: use render_taxon_or_name() for creating the page and descri...
in `compose_description_table()` the `render_taxon_or_name()` method must be used for portal wide consistend display ... Andreas Kohlbecker
03:35 PM feature request #8777: Make visiblity of CDM Source configurable
Andreas Müller wrote:
> ... hmm, maybe an even better solution is to show the field only if data exists. Is this pos...
Andreas Müller
03:08 PM feature request #8777: Make visiblity of CDM Source configurable
... hmm, maybe an even better solution is to show the field only if data exists. Is this possible? Andreas Müller
03:00 PM feature request #8777 (New): Make visiblity of CDM Source configurable
see #8688, for some projects the CDM Source should not be visible (because not used). This is similar to ID in Source... Andreas Müller
03:15 PM feature request #8688 (Feedback): Make OriginalSourceBase.cdmSource visible in TaxEditor
The current solution shows titleCache+uuid for identifiable entities. This is too much. For now we need only the titl... Andreas Müller
03:12 PM feature request #8778 (New): Have explicit subclass for CdmSourceLink sources
copied from #8688: Possible open questions related: do we want to have a new subclass for OriginalSourceBase which on... Andreas Müller
02:27 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
I think we can close this. If problems occurr we may reopen or immediately fix. Andreas Müller
02:14 PM feature request #8044 (Feedback): Add "Move to..." menu to term editor
* For this usecase the title and the description in the term selection wizard needs to be adapted. It should be somet... Andreas Müller
01:56 PM bug #7994 (Duplicate): Implement allowDuplicates for term trees in TaxEditor
This is a duplicate for #8477, #8776 Andreas Müller
01:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:47 PM feature request #8476 (In Progress): Implement support for TermCollection.isFlat in TaxEditor
Only the flag is editable until now so I put this back to InProgress. Andreas Müller
01:53 PM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:50 PM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees
Only editing the flag is implemented until now so I put it back to InProgress Andreas Müller
01:52 PM bug #8776: Open issues for TermCollection.allowDuplicates handling in TaxEditor
Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:25 PM bug #8776 (New): Open issues for TermCollection.allowDuplicates handling in TaxEditor
* The error message currently looks like an unhandled error. The message should only inform about the fact that dupli... Andreas Müller
01:41 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
Generally this works but there are some open issues. I moved them all to a new ticket: #8776 Andreas Müller
12:19 PM feature request #8242 (Closed): Implement filtered combo boxes for state selection in CharacterMa...
This is generally implemented. There are follow up tickets like #8254 and #8775 Andreas Müller
12:14 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
This seems to work now. There are issues with the general (rapid) data entry of categorical data into the matrix. The... Andreas Müller
12:12 PM feature request #8775 (New): Improve (rapid) data entry into characater matrix for categorical data
Quantitative data can be entered into the matrix very fast by only using the keyboard via return, left, right and num... Andreas Müller
11:50 AM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors
Andreas Müller
11:44 AM bug #8751: Replace saveOrUpdate() in AbstractTermTreeEditor
This is probably more or less a duplicate for #8774 and will be fixed by #8774 Andreas Müller
11:41 AM bug #8663 (Duplicate): LIE when trying to save a tree node
This is probably a duplicate for #8744 Andreas Müller
11:38 AM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor
The LIE itself seems to be fixed by switching to merge() but there are still very serious issues related to saving of... Andreas Müller
11:28 AM bug #8744: LazyInitializationException (LIE) saving the Character Editor
Andreas Müller wrote:
> hmm, it does not really seem to be the problem, but I found that there seems no session to b...
Andreas Müller
11:36 AM bug #8774 (In Progress): Reimplement term tree editors to implement the general save strategy
Currently term trees save changes in the hierarchy (including new terms/nodes) immediately in the DB. This is against... Andreas Müller
11:24 AM bug #8748 (Closed): Supported state vocabularies should be ordered
This is fixed and is a very nice and important feature. Andreas Müller
11:22 AM feature request #8755 (Closed): Show all structure/property trees in CharacterEditor
Follow up issues are moved to extra tickets so we can close this one. Andreas Müller
11:20 AM feature request #8773 (New): [DISCUSS] Allow editing structure and properties tree in Character E...
copied from #8755#note-3:
"with the current state of the structure tree it is sometimes wanted to extend this tree...
Andreas Müller
10:23 AM feature request #8772 (New): Recognize Character duplicates
Characters constructed from structure and property (and structural modifier) can be recognized as duplicates by this ... Andreas Müller
09:10 AM feature request #8771 (Feedback): display of average value with precision so that it differs from...
do you agree with my suggestion? Andreas Kohlbecker
09:07 AM feature request #8771 (Resolved): display of average value with precision so that it differs from...
The display of decimal place for average value should be adjusted so that it differs from the values on min and max (... Andreas Kohlbecker

12/16/2019

05:05 PM feature request #8769 (Feedback): Biocase import configuration should be shown when clicking on i...
I fear that just opening the import config dialog does not really help.
I suggest to solve this problem differently:...
Andreas Kohlbecker
02:11 PM feature request #8769 (New): Biocase import configuration should be shown when clicking on import...
The configuration dialog should be opened everytime the import button is clicked.
At the moment the configuration ...
Katja Luther
04:58 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
ready for review Andreas Kohlbecker
01:41 PM bug #8766 (Resolved): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
Applied in changeset commit:cdm-dataportal|f63479aed323653e11922bb4dc3865537c5904cb. Andreas Kohlbecker
04:33 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found
fixed Andreas Kohlbecker
04:33 PM bug #8770 (Resolved): NameControllers responds with all entities when name uuid is not found
Applied in changeset commit:cdmlib|cc3ce6e30c74308b6697f6007d03d37b00cce8ff. Andreas Kohlbecker
04:25 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found
When the uuid in `portal/name/c0b7aa13-301d-4a0c-a8c6-843e96c34ba8/taxonNameDescriptions.json` is not found in the db... Andreas Kohlbecker
04:32 PM Revision cc3ce6e3 (cdmlib): fix #8770 responding with http code 404 in case name uuid is not found
Andreas Kohlbecker
04:01 PM Revision b0b87ef4 (cdm-dataportal): ref #8658 relaxing palmweb test assertions to conform new dat...
Andreas Kohlbecker
02:42 PM Revision d43a3486 (cdm-dataportal): ref #8658 again using feature name as key for blocks (uuid br...
Andreas Kohlbecker
01:41 PM Revision f63479ae (cdm-dataportal): fix #8766 improving display of statistical measures (sample s...
Andreas Kohlbecker
11:41 AM Revision 86bbdab9 (taxeditor): ref #7981: add aggregation wizard to character matrix
Katja Luther
11:39 AM Revision bb7eab5c (taxeditor): ref #7981: externalization of strings
Katja Luther
11:35 AM Revision 70e39ea8 (taxeditor): ref #7981: implement aggregation configuration wizard
Katja Luther
09:26 AM Revision cba88a5e (cdmlib): rename ExternalNameIdentifier to ExternalIdentifier
Katja Luther
 

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