Activity
From 12/15/2019 to 01/13/2020
01/13/2020
- 05:32 PM bug #8684 (In Progress): ITaxonService.findTaxaByName misses initStrategy Parameter
- testing the web service (locally with the caryophlalles_spp database):
~~~
http :8081/portal/taxon/doFindByNamePa... - 05:11 PM bug #8719 (Closed): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
- as this problem did no longer occur we can close this issue.
- 05:10 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
- 05:07 PM feature request #8686 (Closed): Support CdmLink sources in bibliography
- fragment removed from links - closing ticket.
- 05:06 PM Revision cbe9b085 (cdm-dataportal): ref #8686 removing fragment from link
- 04:56 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- By now we are having quite good solution, and I suggest to close this issue. Please move further requirements and wis...
- 04:16 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > 3 Verbesserungsvorschläge:
> >
> Derzeit ist u.A. vor al... - 04:06 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Andreas Müller wrote:
> 3 Verbesserungsvorschläge:
>
> * Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg... - 04:54 PM Revision 8726bde3 (cdm-dataportal): ref #8771 documenting phpUnit test execution
- 04:49 PM Revision dd80884c (cdm-dataportal): ref #8771 finetuning of statistical values display and more tests
- 04:35 PM Revision 6b99e174 (cdmlib-apps): ref #1447 underscore for parent diff file
- 03:11 PM Revision 0e1b6929 (cdm-dataportal): ignoring all target folders
- 03:11 PM Revision fd411b34 (cdmlib-apps): ref #1447 remove unncessary casts and cleanup
- 03:11 PM Revision 145a5e49 (cdm-dataportal): removing modules/cdm_dataportal/target/
- 03:07 PM Revision c3fb3bba (cdm-dataportal): ref #8771 more test cases
- 02:48 PM Revision a163fed9 (cdmlib-apps): ref #1447 add utf8 to writer
- 02:20 PM Revision 29d3d2ce (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 02:18 PM Revision 7c808239 (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 02:05 PM Revision 778b241c (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 01:52 PM Revision 458948d0 (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 01:22 PM Revision 2e07d351 (cdm-dataportal): ref #8771 phpunit logging in junit xml format - renaming logfile
- 01:08 PM Revision b2ecf616 (cdm-dataportal): ref #8771 phpunit logging in junit xml format
- 08:23 AM Revision 76c0847f (cdm-dataportal): ref #8771 downgrading to phpUnit 5 for backwards compatibility with php5
01/12/2020
- 01:05 AM Revision ab6f97de (cdmlib-apps): cleanup
- 01:02 AM Revision 874a38f5 (cdmlib-apps): ref #8643 fix FaEu destination 2
01/10/2020
- 02:20 PM Revision 2e91751e (cdmlib): ref #1447 add StringComparator
- 01:01 PM Revision b5b0fcf5 (cdmlib-apps): ref #1447 improve PesiFindIdenticalNamesActivator
- 12:38 PM Revision c938072f (cdmlib): ref #1447 fix findIdenticalName function
- 12:07 PM Revision fa9ef8c4 (cdmlib): minor
- 10:55 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select another reference
- I could not reproduce this error anymore, so we can close it.
- 10:54 AM bug #8801: Deselected menu items are not reactivated in navigator
- please review
- 10:19 AM Revision 20553b7e (cdmlib-apps): revert wrong merge changes on findIdenticalNameActivator
- 10:10 AM Revision c13878e2 (cdmlib-apps): merge changes
01/09/2020
- 05:29 PM Revision df2eb131 (cdm-dataportal): ref #8771 unit test for significant figures of statistical values
- 05:28 PM Revision fa718a2c (cdm-dataportal): fixing PHPUnit setup for php 7 and documenting its usage with PHPStorm
- 01:17 PM Revision b22a7fb6 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- 01:17 PM Revision ce7a0180 (cdmlib): smaller changes in ABCD import
- 01:12 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Andreas Müller wrote:
> Die Zeile verstehe ich nicht:
>
> $precision += $precision < 0 ? - 1 : 1;
>
> Waru... - 12:30 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Die Zeile verstehe ich nicht:
$precision += $precision < 0 ? - 1 : 1;
Warum muss die Richtung der Präzision... - 12:04 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Example on test/cactaceae:
http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/descript... - 12:01 PM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit
- Applied in changeset commit:cdm-dataportal|8480271c782d1cce2fffdb4cb95b0f30d9367712.
- 11:47 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Is there an example page available?
- 11:46 AM feature request #8771 (Feedback): display of average value with precision so that it differs from min and max by one digit
- 3 Verbesserungsvorschläge:
* Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg=min(=max) bzw. StdAbw und Va... - 11:29 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Hallo,
der Fall x=0 ist der Fall min=max. => avg=min(=max). Also trivial, die Dezimalstellen sollten die gleich... - 11:09 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- please review
- 11:08 AM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit
- Applied in changeset commit:cdm-dataportal|793df79047e8716b03d8ba09feeec495d5f410aa.
- 01:08 PM Revision bd04ba61 (taxeditor): fix NPE during exception handling
- 12:53 PM Revision 86fd29ff (cdmlib): ref #1447 change duplicate finding of names from sec to source reference and allow >2 sources
- 12:00 PM Revision 8480271c (cdm-dataportal): fix #8771 removing comment
- 11:08 AM Revision 793df790 (cdm-dataportal): fix #8771 display of average value with minimum amount of significant figures
01/08/2020
- 06:02 PM Revision 2f4646e0 (cdm-dataportal): ref #8786 renaming all min_max_*() functions to statistical_values_*()
- 05:48 PM task #8786 (Resolved): Display of mean value with min max
- Done!
The trivial case where only one value exists or when Min = Max or when TypicalLowerBoundary = TypicalUpperBo... - 03:32 PM task #8786: Display of mean value with min max
- ich habe in der Ticketbeschreibung nochmals alles zusammengefasst
- 03:22 PM task #8786: Display of mean value with min max
- Sieht gut aus.
Kleine Anmerkung: ich bin mir nicht sicher, ob wir immer eine Sample Size haben. Gerade bei de... - 03:22 PM task #8786: Display of mean value with min max
- Hallo,
Könnten wir den bis-Strick jeweils in die Klammer hinein nehmen, das ist die gebräuchlichere Variante?... - 03:21 PM task #8786: Display of mean value with min max
- Achso, ne, wollten wir nicht eckige Klammern um den Mittelwert? Und die Frage steht noch aus, ob in die eckigen Klamm...
- 03:21 PM task #8786: Display of mean value with min max
- um sicher zu gehen, dass wir jetzt wirklich vom Selben sprechen.
Das Beispiel aus der Ticket Beschreibung (1.... - 10:28 AM task #8786: Display of mean value with min max
- Hallo Norbert,
wie gesagt, finde ich unschön, dass es sprachabhängig ist (in einem Deutschen Portal müssten w... - 10:27 AM task #8786: Display of mean value with min max
- Hallo Andreas,
ja, hab ich auch so gefunden, wäre ich auch mit einverstanden. Ich hatte "mean" ausgeschrieben... - 10:27 AM task #8786: Display of mean value with min max
- Hallo,
vielleicht ist „x bar“ x̄ noch besser. Das sollte mathematisch eindeutig sein.
μ wird wohl auch man... - 10:26 AM task #8786: Display of mean value with min max
- Hallo Andreas,
Mittelwert: ja, solche Details der Darstellung hatte wir noch gar nicht besprechen können.
... - 10:25 AM task #8786: Display of mean value with min max
- Hallo,
es kann gut sein, dass die Schreibweise mit dem Mittelwert zwischen den Min und Max Werten nicht abges... - 05:40 PM Revision cd3ea2e8 (cdm-dataportal): ref #8739 updated explanatory text for statistical values
- 05:32 PM Revision 2eb6acb7 (cdm-dataportal): ref #8786 improved display of min, max, mean and other statistical values
- 05:31 PM Revision b736d380 (cdm-dataportal): typos in README
- 03:14 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Eine Funktion zum runden oder trunkieren nach signifikanten Stellen gibt es in php nicht aber in diesem Stackoverflow...
- 02:59 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
Hallo,
der Vorschlag die Differenz Max - Min für die Berechnung der signifikanten Stellen des Mittelwertes ...- 02:57 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Eigentlich ist das entscheidende ja, wie weit min und max von einander entfernt sind. Bei 98-190 reicht eine Zahl ohn...
- 02:56 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Weitere Beispiele für die Ticket-Beschreibung
- 01:29 PM bug #8800 (Resolved): If supplemental data view shows reference it is not possible to select another reference
- Applied in changeset commit:cdmlib|db7b0ee79b966b68a1d2958214303d4b101f1022.
- 12:32 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference
- I checked Walters log-file (see below). So he also got an error in ReferenceDaoHibernateImpl.getUuidAndTitle but in a...
- 12:14 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference
- AM:
Das klingt ein bisschen wie der Fehler den ich gestern mit dem nicht möglichen Aufrufen des Referenzdialoges f... - 09:31 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select another reference
- mail WB:
Hallo,
ich habe ein merkwürdiges Problem beim Editieren einer Referenz, und zwar sowohl aus dem Bulk Edi... - 01:28 PM Revision db7b0ee7 (cdmlib): fix #8800 fix NPE in Reference.getUuidAndTitle
- 12:19 PM bug #8801: Deselected menu items are not reactivated in navigator
- Being resolved this can go into 5.12, correct?
- 11:15 AM bug #8801 (Resolved): Deselected menu items are not reactivated in navigator
- 11:15 AM bug #8801: Deselected menu items are not reactivated in navigator
- the problem seems to be that the menu items are submenu items of "edit subtree" and when for all menu items visibilit...
- 09:33 AM bug #8801 (Closed): Deselected menu items are not reactivated in navigator
- mail AM:
noch ein Problem. Wenn ich ein Multiselect auf Taxa im Navigator mache wird das Set for Subtree Menü di... - 11:07 AM Revision caffc76b (taxeditor): ref #8801: disabled submenu items should be visible again
01/07/2020
- 06:19 PM Revision 4f67e0f9 (cdmlib): temporarily ignore SortIndexUpdaterWrapperTest
- 06:19 PM Revision 8b3c844e (cdmlib): cleanup and javadoc
- 04:50 PM feature request #8787: Improve layout for ExactValue on Description Pages
- Andreas Kohlbecker wrote:
> Implemented.
>
> I did not change the separator to semicolon since we are using the ... - 04:35 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages
- Implemented.
I did not change the separator to semicolon since we are using the comma already for separating all ... - 04:30 PM feature request #8787: Improve layout for ExactValue on Description Pages
- implemented in commit:cdm-dataportal|88e622d25
- 03:48 PM feature request #8787 (In Progress): Improve layout for ExactValue on Description Pages
- 03:47 PM feature request #8787: Improve layout for ExactValue on Description Pages
- [norbert wrote]
ich sehe keine Notwendigkeit einen exact value besonders zu kennzeichnen, bin für semikolon-separ... - 03:39 PM feature request #8787 (Feedback): Improve layout for ExactValue on Description Pages
- Rauten stehen nach meinem Verständniss üblicherweise für "Nummer" oder "Anzahl", damit eine "Exact Value" zu kennzeic...
- 04:42 PM feature request #8798 (Resolved): description page: Show character hierarchy
- done
- 01:45 PM feature request #8798 (Resolved): description page: Show character hierarchy
- The hierarchy of the characters in the character tree should be visualized in the description table
- 04:37 PM Revision fa094d60 (cdm-dataportal): ref #8739 table caption to the top an with smaller font
- 04:33 PM Revision 2d78d276 (cdm-dataportal): ref #8787 uncommenting previously implemented improved display of exact values
- 04:16 PM task #8799 (New): [PESI][E+M] [Discuss] Use reference author instead of (sec)-reference for (Species)ExpertName
- Other databases in PESI use only the expert name (e.g. http://www.eu-nomen.eu/portal/taxon.php?GUID=urn:lsid:marinesp...
- 04:02 PM Revision 88e622d2 (cdm-dataportal): ref #8739 indenting description table entries by character hierarchy - bugfix
- 03:42 PM task #8786: Display of mean value with min max
- [Norbert wrote:]
Noch zu der Darstellung der Werte mit Mittelwert. Wenn ich mich richtig erinnere, waren wir uns e... - 02:27 PM Revision 209feb13 (cdm-dataportal): ref #8739 indenting description table entries by chraracter hierarchy
- 01:32 PM Revision e95b14dd (cdm-dataportal): ref #8739 loading missing name for taxa in render_taxon_or_name()
- 12:40 PM Revision 92e522db (cdm-dataportal): ref #8739 description sources in alphabetical order
- 11:59 AM Revision 31d293b1 (cdm-dataportal): ref #8739 description table header left aligned (affects all data portal tables)
- 11:49 AM bug #8774 (In Progress): Reimplement term tree editors to implement the general save strategy
- 11:20 AM Revision a651a0c4 (cdmlib): cdm light fix export of areas without level
01/06/2020
- 05:01 PM Revision 34743ac7 (cdmlib-apps): ref #8508, ref #8577 treeindex test for E+M validation and common base class for E+M and Erms validation
- 04:57 PM Revision bc416076 (cdmlib-apps): ref #1447 cleanup FaunaEuErmsFindIdenticalNamesActivator
- 12:31 PM bug #8797 (Resolved): Navigator tree collapse after moving taxon node
- please review
- 12:28 PM bug #8797 (Closed): Navigator tree collapse after moving taxon node
- mail Nadja:
Liebe alle,
ich habe einen Bug festgestellt, der das Arbeiten extrem verlangsamt:
Verschiebt man... - 12:30 PM Revision b0947131 (taxeditor): ref #8797: only refresh parent node after moving node
- 09:51 AM Revision 50caf951 (cdm-dataportal): remove : from values of default description elements for specimen page
12/28/2019
- 04:10 PM Revision 2eee7850 (cdmlib-apps): ref #1444 minor fixes for ErmsImportActivator
- 04:09 PM Revision 85c9a0d8 (cdmlib-apps): ref #2717 fix sourceFk handling for pure names
- 04:08 PM Revision 19743136 (cdmlib-apps): ref #8508 fix and finalize taxon status (cache) validation
- 11:45 AM Revision 3d6c7bfc (cdmlib-apps): ref #1444, ref #8508, ref #8509 fix ERMS taxon status handling
- 10:48 AM Revision f859201a (cdmlib-apps): ref #8508 further improvements to ERMS validation
12/27/2019
- 11:16 PM Revision 0e601fdc (cdmlib-apps): ref #8509 fix sourceFk handling in PESI taxon export
- 11:14 PM Revision 744bd412 (cdmlib-apps): ref #8509 improve tagged names handling in PESI export (ERMS and others)
- 11:11 PM Revision c0411992 (cdmlib-apps): ref #1444, ref #7976 fix erronous subgenus formatting in ERMS
- 11:09 PM Revision c12d2903 (cdmlib-apps): ref #1444, ref #7976 better logging for unhandled unacceptReason
- 10:49 PM Revision 15d48661 (cdmlib-apps): cleanup
- 04:48 PM task #8796 (New): [PESI][DW] Handling of Taxon.SourceFk
- In SQL Script the Taxon.SourceFk was filled the following way:
* for taxa from ERMS, FauEU and IF it was filled by... - 11:09 AM bug #8508 (In Progress): [PESI][ERMS] ERMS import pipeline validation
- 09:48 AM Revision 2abd2851 (cdmlib-apps): ref #8508 improve treeindex validation and remove source type 'i' handling
- 09:39 AM Revision 8f402cc0 (cdmlib-apps): ref #1444, ref #2871, ref #7976 improve authorship handling for MAN
- 09:37 AM Revision 751d08a3 (cdmlib-apps): ref #1444 remove 2 taxon status checks from ErmsTaxonImportValidator as they are not correct anymore
- - status is now handled via id and tu_accfinal, not via taxonStatus field
- 09:31 AM task #8795 (New): [PESI][DW] CHECK all fields on correct handling of merged data in PESI export
- Sometimes merged data needs to be pipe separated or something else. All fields need to be checked if they handle this...
12/26/2019
- 11:33 PM task #8794 (New): [PESI][Merge]+[DW] Check all SQL scripts related to merging
- Check all SQL script which are not single DB specific on Y:\BDI\PESI\sh\DBs2PESI\vCDM
- 09:12 PM Revision a12e9e83 (cdmlib-apps): ref #2104 remove fixme from unused PesiNoteSourceExport_Old
- 08:07 PM bug #8793 (New): [E+M] In-Ref authors should have full (non-abbreviated) author title without initials
- This is a E+M requirement for nom. ref. formatting
- 07:29 PM Revision dd68b822 (cdmlib-apps): ref #8508 latest changes
- 07:28 PM Revision e706b35f (cdmlib-apps): cleanup
- 07:21 PM Revision 58968197 (cdmlib-apps): ref #1444, ref #7976 improve misapplication handling in ERMS import
- 06:41 PM task #7976 (Closed): [PESI][ERMS] Erms taxon import
- 05:02 PM task #8792: Issues to have in mind for ERMS import
- Open issues from comparing SQL scripts (Y:\BDI\PESI\sh\DBs2PESI\vCDM\):
!!!! Do check again because maybe I checke... - 12:06 PM task #8792 (New): Issues to have in mind for ERMS import
- The functioning of the ERMS import (and PESI export) is explained at: [[Erms_mapping]]
## General information
O... - 01:59 PM Revision d4c6ec84 (cdmlib-apps): ref #8508 minor and cleanup
- 01:56 PM Revision 0d26082d (cdmlib-apps): ref #8509 handle new ERMS quality status "Thematic Editor"
- 01:55 PM Revision bd4c4dee (cdmlib-apps): ref #1444, #8509 fix pipeline handling in ErmsImportActivator
- 01:54 PM Revision 2a2eb365 (cdmlib-apps): ref #1444 replace tu_acctaxon by tu_accfinal
12/24/2019
- 01:52 AM Revision 8419d12a (cdmlib-apps): ref #8508 latest changes to ERMS validation
- 01:51 AM Revision 98d96cf6 (cdmlib-apps): cleanup
- 01:45 AM Revision c44a40e4 (cdmlib-apps): ref #8509 fix taxonStatus export for ERMS
12/23/2019
- 09:37 PM Revision 0cd4c1a9 (cdmlib-apps): cleanup
- 09:36 PM Revision 7373dcf3 (cdmlib-apps): ref #2717 remove publish marker and uuidMisappliedCommonName marker handling because not needed anymore
- 09:32 PM Revision ec9963cf (cdmlib-apps): ref #2717 add 2nd source to EuroMedSourceActivator
- 08:56 PM Revision ea77fefa (cdmlib-apps): ref #1444 handle missing sourceUse
- 08:31 PM Revision 4c575756 (cdmlib-apps): ref #1444 minor changes and cleanup
- 08:30 PM Revision bd1bdb28 (cdmlib-apps): ref #1444 some changes due to upgrade to ERMS v2019
- 08:28 PM Revision e4598bb4 (cdmlib-apps): ref #1444 add new ERMS source and rename old one
- 12:09 PM feature request #8441 (Closed): Add FeatureState class
- I think we can close this ticket.
- 10:00 AM Revision 5d17ab2a (cdmlib-apps): cleanup and move isIgnoreNull from base configurator to BMconfig only
- 09:58 AM Revision cb5cbca9 (cdmlib): remove ignoreNull from ImportConfiguratorBase
12/22/2019
- 11:08 PM Revision 2d7259ef (cdmlib-apps): ref #2717 some updates to PESI export
- 11:06 PM Revision e5364977 (cdmlib-apps): ref #8577 improve E+M export validation
- 11:01 PM Revision 0420a928 (cdmlib): cleanup
12/20/2019
- 04:28 PM bug #8791: Measurement units are not assigned to quantitative data in matrix
- This urgent as the current implementation creates incomplete data that needs to be repaired manually (see #8790)
- 04:17 PM bug #8791 (Closed): Measurement units are not assigned to quantitative data in matrix
- In a first quick fix we should implement it such that if the feature has exactly 1 recommended measurment unit this u...
- 04:16 PM bug #8790 (Closed): Update measurement units for existing quantitative data missing a unit
- This is how to find them:
~~~
SELECT f.id featureId, f.titleCache, mu.id unitId, mu.titleCache unit, deb.*
FROM... - 03:55 PM feature request #8789 (New): How can we semantically handle characters like "partial inflorescence arrangement - distance 1st to 2nd bract"
- This is currently a quantitative character in Cactaceae which uses
structure: partial inflorescence
Property: arr... - 03:26 PM bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore
- Problem description:
Das Problem ist, dass hier auf die geclonten (archivierten) Specimen Descriptions verlinkt wi... - 03:01 PM feature request #8787: Improve layout for ExactValue on Description Pages
- This should only be applicable for the specimen pages themselves: http://test.e-taxonomy.eu/dataportal/preview/greece...
- 03:00 PM feature request #8787: Improve layout for ExactValue on Description Pages
- A maybe temporary example ist http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/descriptio...
- 02:56 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages
- Currently formatting is not nice:
A first suggestion from an Email:
Da sollten wir uns... - 02:59 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Handling for Exact Value is still open, but handled now in own ticket #8787
- 10:08 AM Revision 69019789 (cdmlib): ref #8782: add isDeletable to descriptionService
- 12:31 AM Revision 4a2b3c5b (cdmlib): ref #8469 support reuse of quantitative characters in subbranches
12/19/2019
- 05:14 PM bug #8739 (Resolved): remaining issues for description detail page
- AS far as I see, this ticket is either solved or remaining issues are copied to new tickets.
Therefore I suggest c... - 05:12 PM Revision 753a8083 (cdm-dataportal): ref #8739 description page better and stylable DOM
- 05:08 PM task #8786 (Feedback): Display of mean value with min max
- 05:08 PM task #8786 (Resolved): Display of mean value with min max
> abgesehen davon, dass die Mittelwertangabe zwischen Min und Max unüblich ist, ... Eine bessere Darstellung wär...- 03:59 PM Revision 16ab19f1 (cdm-dataportal): ref #8781 first feature element starts with upper case letter - bug fix
- 03:00 PM feature request #8769 (New): Biocase import configuration should be shown when clicking on import button
- Andreas Kohlbecker wrote:
> I fear that just opening the import config dialog does not really help.
> I suggest to ... - 02:59 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I find it very useful for debugging that computed description... - 02:28 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Kohlbecker wrote:
> I find it very useful for debugging that computed descriptions can be viewed and modifie... - 02:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> this should be possible in character matrix. I have to test this.
yes, it should be handled... - 02:35 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- this should be possible in character matrix. I have to test this.
- 11:58 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Also this one I put to current milestone for same reason as #8784
- 11:58 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- The issue is described in #8784 but I created a new ticket as it is as deleting a specimen description (which is hand...
- 02:30 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- As this is a critical issue I suggest to put it into 5.13. (5.12 is probably not possible as the task is difficult). ...
- 02:23 PM bug #8784: Deleting a specimen description not possible
- fixing the delete handling in deletehandler of the factual data view. Now the deletion of descriptions and descriptio...
- 11:57 AM bug #8784 (In Progress): Deleting a specimen description not possible
- this is already in process because I already found this problem while working on #8782
- 11:54 AM bug #8784: Deleting a specimen description not possible
- I put this into the current milestone because it is a blocker for undoing incorrect/unwanted data entries.
- 11:53 AM bug #8784 (Closed): Deleting a specimen description not possible
- Currently it seems to be impossible to delete a specimen description.
In the specimen LIST editor specimen descrip... - 02:21 PM Revision a776559e (taxeditor): ref #8784: fix deleteHandler for factual data
- 02:21 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
- Looks fine now
- 01:51 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
- Andreas Müller wrote:
> Now the semicolon is missing everywhere, it should be removed ONLY at the end:
>
Proble... - 01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
- An example can be found here: http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/taxon/8718...
- 01:19 PM feature request #8781 (Feedback): Descriptions (aggregated): futher improvements
- 01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
- Now the semicolon is missing everywhere, it should be removed ONLY at the end:
The capita... - 02:12 PM Revision bea70813 (cdm-dataportal): ref #8739 labels of CategoricalData and QuatitativeData stylable
- 01:50 PM Revision caf1ed73 (cdm-dataportal): ref #8781 restoring lost semicolons in description element string representations
- 10:20 AM Revision 3db61e83 (cdm-dataportal): ref #8739 description page: improved dom and using stylesheets instead of html tags
- 01:10 AM Revision 6f40bb03 (cdmlib): cleanup
- 01:10 AM Revision e04e5f03 (cdmlib): ref #8469 use correct handling for removeChildNode
- 12:53 AM Revision ca83d76f (cdmlib): ref #8469 add useTaxonHierarchy for PolytomousKeyGenerator
- 12:51 AM Revision e667c033 (cdmlib): ref #8469 fix remove taxon node from taxon for TaxonNode.remove()
- 12:49 AM Revision af44169e (cdmlib): cleanup
12/18/2019
- 05:03 PM Revision ad7fa57c (cdm-dataportal): ref #8739 description page: solving problems with unit display, order and spacing
- 04:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- I find it very useful for debugging that computed descriptions can be viewed and modified in the editor. Can't we all...
- 02:43 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
This was observed with a locally running cdmlib-remote-webapp instance configured with 700 MB of Heap:
: Delete a description included in a CdmSource should not be possible
- mail AM:
ich habe gerade DescriptionBase gelöscht (aus dem Facts View heraus), die noch verlinkt waren über eine C... - 01:24 PM bug #8780: Repair sortindex does not work on TermTree index
- This should be fixed. Please review.
- 11:57 AM bug #8780 (Resolved): Repair sortindex does not work on TermTree index
- Applied in changeset commit:cdmlib|dad659722b698863a2dee711782748b0de216a71.
- 09:16 AM bug #8780 (Closed): Repair sortindex does not work on TermTree index
- 01:11 PM Revision 7b8c575b (cdmlib): cleanup
- 01:00 PM Revision cc6c7d5e (cdmlib): cleanup
- 01:00 PM Revision 6c143263 (cdmlib): ref #8780 fix autowire issue for repository (workaround)
- 12:47 PM Revision 86f7ea85 (cdmlib): cleanup
- 12:43 PM Revision a483ffcd (cdmlib): ref #8780 test nodes recursive and generic
- 12:42 PM Revision 365cff58 (cdmlib): cleanup
- 12:41 PM Revision a2928800 (cdmlib): fix ConcurrentSessionTest testdata
- 12:21 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
- ticket complete
- 12:08 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
- Hallo Andreas,
1. am Ende der aggregated descriptions gibt es derzeit im noch ein überflüssiges Komma. Könntest du... - 12:20 PM Revision 2bc2b13e (cdm-dataportal): ref #8781 first feature element starts with upper case letter
- 12:18 PM Revision e425fd81 (cdmlib): cleanup
- 12:17 PM Revision 1d287b23 (cdmlib): ref #8780 reduce test dataset
- 12:09 PM Revision 2e5f796f (cdm-dataportal): ref #8781 removing semicolon from end of description
- 11:59 AM Revision 3076588b (cdmlib): ref #8780 add SortIndexUpdaterWrapperTest for term nodes
- 11:58 AM Revision b171b803 (cdmlib): ref #8780 cleanup SortIndexUpdaterWrapper
- 11:58 AM Revision 386112b5 (cdmlib): replace featureTreeService by termTreeService
- 11:57 AM Revision 0a165781 (cdmlib): cleanup
- 11:46 AM Revision 87aa88d6 (cdm-dataportal): ref #8739 aggregated description feature block: explainig bracketed numbers
- 11:22 AM feature request #7981 (In Progress): Add configuration UI for matrix description aggregation
- 11:21 AM Revision 6722d9a5 (cdm-dataportal): ref #8739 description page: explainig bracketed numbers
- 09:47 AM Revision 1da7de81 (cdmlib): ref #8780 cleanup
- 09:47 AM Revision dad65972 (cdmlib): fix #8780 fix term node sortindex updater (TermNode->TermRelation)
- 09:36 AM Revision 558d4b79 (cdmlib): cleanup
- 09:26 AM Revision 61cfb399 (cdmlib): cleanup
12/17/2019
- 04:01 PM Revision 01e26d23 (taxeditor): ref #7981: remove aggregation call in wizard
- 03:55 PM bug #8566 (Rejected): Recursive aggregation for common parent taxon does not work if not in data set
- This is expected behavior, not a bug IMO. However, with the UI aggregation trigger we may have more possibilities to ...
- 03:47 PM feature request #8686: Support CdmLink sources in bibliography
- An example could be shown here: http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/taxon/...
- 03:46 PM feature request #8686 (Feedback): Support CdmLink sources in bibliography
- Andreas Kohlbecker wrote:
> **Note**: The links to the taxa are having a fragment which directly focuses on the "Agg... - 03:42 PM Revision 20bfe15b (cdm-dataportal): fix #8779 harmonization of taxon display in descriptions
- 03:40 PM bug #8779 (Resolved): Description page: use render_taxon_or_name() for creating the page and description title and taxon links
- after harmonization the top of the page now looks like
If more detailed display of the ta... - 03:20 PM bug #8779 (Closed): Description page: use render_taxon_or_name() for creating the page and description title and taxon links
- in `compose_description_table()` the `render_taxon_or_name()` method must be used for portal wide consistend display ...
- 03:35 PM feature request #8777: Make visiblity of CDM Source configurable
- Andreas Müller wrote:
> ... hmm, maybe an even better solution is to show the field only if data exists. Is this pos... - 03:08 PM feature request #8777: Make visiblity of CDM Source configurable
- ... hmm, maybe an even better solution is to show the field only if data exists. Is this possible?
- 03:00 PM feature request #8777 (Resolved): Make visiblity of CDM Source configurable
- see #8688, for some projects the CDM Source should not be visible (because not used). This is similar to ID in Source...
- 03:15 PM feature request #8688 (Feedback): Make OriginalSourceBase.cdmSource visible in TaxEditor
- The current solution shows titleCache+uuid for identifiable entities. This is too much. For now we need only the titl...
- 03:12 PM feature request #8778 (New): Have explicit subclass for CdmSourceLink sources
- copied from #8688: Possible open questions related: do we want to have a new subclass for OriginalSourceBase which on...
- 02:27 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
- I think we can close this. If problems occurr we may reopen or immediately fix.
- 02:14 PM feature request #8044 (Feedback): Add "Move to..." menu to term editor
- * For this usecase the title and the description in the term selection wizard needs to be adapted. It should be somet...
- 01:56 PM bug #7994 (Duplicate): Implement allowDuplicates for term trees in TaxEditor
- This is a duplicate for #8477, #8776
- 01:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
- Note: saving often does not work due to issues to be solved in #8774
- 01:47 PM feature request #8476 (In Progress): Implement support for TermCollection.isFlat in TaxEditor
- Only the flag is editable until now so I put this back to InProgress.
- 01:53 PM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
- Note: saving often does not work due to issues to be solved in #8774
- 01:50 PM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees
- Only editing the flag is implemented until now so I put it back to InProgress
- 01:52 PM bug #8776: Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Note: saving often does not work due to issues to be solved in #8774
- 01:25 PM bug #8776 (Closed): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- * ~~The error message currently looks like an unhandled error. The message should only inform about the fact that dup...
- 01:41 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
- Generally this works but there are some open issues. I moved them all to a new ticket: #8776
- 12:19 PM feature request #8242 (Closed): Implement filtered combo boxes for state selection in CharacterMatrix
- This is generally implemented. There are follow up tickets like #8254 and #8775
- 12:14 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
- This seems to work now. There are issues with the general (rapid) data entry of categorical data into the matrix. The...
- 12:12 PM feature request #8775 (In Progress): Improve (rapid) data entry into characater matrix for categorical data
- Quantitative data can be entered into the matrix very fast by only using the keyboard via return, left, right and num...
- 11:50 AM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors
- 11:44 AM bug #8751: Replace saveOrUpdate() in AbstractTermTreeEditor
- This is probably more or less a duplicate for #8774 and will be fixed by #8774
- 11:41 AM bug #8663 (Duplicate): LIE when trying to save a tree node
- This is probably a duplicate for #8744
- 11:38 AM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor
- The LIE itself seems to be fixed by switching to merge() but there are still very serious issues related to saving of...
- 11:28 AM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- Andreas Müller wrote:
> hmm, it does not really seem to be the problem, but I found that there seems no session to b... - 11:36 AM bug #8774 (Closed): Reimplement term tree editors to implement the general save strategy
- Currently term trees save changes in the hierarchy (including new terms/nodes) immediately in the DB. This is against...
- 11:24 AM bug #8748 (Closed): Supported state vocabularies should be ordered
- This is fixed and is a very nice and important feature.
- 11:22 AM feature request #8755 (Closed): Show all structure/property trees in CharacterEditor
- Follow up issues are moved to extra tickets so we can close this one.
- 11:20 AM feature request #8773 (New): [DISCUSS] Allow editing structure and properties tree in Character Editor
- copied from #8755#note-3:
"with the current state of the structure tree it is sometimes wanted to extend this tree... - 10:23 AM feature request #8772 (New): Recognize Character duplicates
- Characters constructed from structure and property (and structural modifier) can be recognized as duplicates by this ...
- 09:10 AM feature request #8771 (Feedback): display of average value with precision so that it differs from min and max by one digit
- do you agree with my suggestion?
- 09:07 AM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit
- The display of decimal place for average value should be adjusted so that it differs from the values on min and max (...
12/16/2019
- 05:05 PM feature request #8769 (Feedback): Biocase import configuration should be shown when clicking on import button
- I fear that just opening the import config dialog does not really help.
I suggest to solve this problem differently:... - 02:11 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking on import button
- The configuration dialog should be opened everytime the import button is clicked.
At the moment the configuration ... - 04:58 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- ready for review
- 01:41 PM bug #8766 (Resolved): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Applied in changeset commit:cdm-dataportal|f63479aed323653e11922bb4dc3865537c5904cb.
- 04:33 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found
- fixed
- 04:33 PM bug #8770 (Resolved): NameControllers responds with all entities when name uuid is not found
- Applied in changeset commit:cdmlib|cc3ce6e30c74308b6697f6007d03d37b00cce8ff.
- 04:25 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found
- When the uuid in `portal/name/c0b7aa13-301d-4a0c-a8c6-843e96c34ba8/taxonNameDescriptions.json` is not found in the db...
- 04:32 PM Revision cc3ce6e3 (cdmlib): fix #8770 responding with http code 404 in case name uuid is not found
- 04:01 PM Revision b0b87ef4 (cdm-dataportal): ref #8658 relaxing palmweb test assertions to conform new data portal code (ignoring inconsistent html in bibliography block)
- 02:42 PM Revision d43a3486 (cdm-dataportal): ref #8658 again using feature name as key for blocks (uuid broke too much tests by now)
- 01:41 PM Revision f63479ae (cdm-dataportal): fix #8766 improving display of statistical measures (sample size, variance, standart deviation)
- 11:41 AM Revision 86bbdab9 (taxeditor): ref #7981: add aggregation wizard to character matrix
- 11:39 AM Revision bb7eab5c (taxeditor): ref #7981: externalization of strings
- 11:35 AM Revision 70e39ea8 (taxeditor): ref #7981: implement aggregation configuration wizard
- 09:26 AM Revision cba88a5e (cdmlib): rename ExternalNameIdentifier to ExternalIdentifier
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