Activity

From 12/12/2019 to 01/10/2020

01/10/2020

02:20 PM Revision 2e91751e (cdmlib): ref #1447 add StringComparator: Andreas Müller
01:01 PM Revision b5b0fcf5 (cdmlib-apps): ref #1447 improve PesiFindIdenticalNamesActivator: Andreas Müller
12:38 PM Revision c938072f (cdmlib): ref #1447 fix findIdenticalName function: Andreas Müller
12:07 PM Revision fa9ef8c4 (cdmlib): minor: Andreas Müller
10:55 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select another reference: I could not reproduce this error anymore, so we can close it. Katja Luther
10:54 AM bug #8801: Deselected menu items are not reactivated in navigator: please review Katja Luther
10:19 AM Revision 20553b7e (cdmlib-apps): revert wrong merge changes on findIdenticalNameActivator: Katja Luther
10:10 AM Revision c13878e2 (cdmlib-apps): merge changes: Katja Luther

01/09/2020

05:29 PM Revision df2eb131 (cdm-dataportal): ref #8771 unit test for significant figures of statistical values: Andreas Kohlbecker
05:28 PM Revision fa718a2c (cdm-dataportal): fixing PHPUnit setup for php 7 and documenting its usage with PHPStorm: Andreas Kohlbecker
01:17 PM Revision b22a7fb6 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop: Katja Luther
01:17 PM Revision ce7a0180 (cdmlib): smaller changes in ABCD import: Katja Luther
01:12 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Andreas Müller wrote:
> Die Zeile verstehe ich nicht:
>
> $precision += $precision < 0 ? - 1 : 1;
>
> Waru... Andreas Kohlbecker
12:30 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Die Zeile verstehe ich nicht:
$precision += $precision < 0 ? - 1 : 1;
Warum muss die Richtung der Präzision... Andreas Müller
12:04 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Example on test/cactaceae:
http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/descript... Andreas Müller
12:01 PM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit: Applied in changeset commit:cdm-dataportal|8480271c782d1cce2fffdb4cb95b0f30d9367712. Andreas Kohlbecker
11:47 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Is there an example page available? Andreas Müller
11:46 AM feature request #8771 (Feedback): display of average value with precision so that it differs from min and max by one digit: 3 Verbesserungsvorschläge:
* Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg=min(=max) bzw. StdAbw und Va... Andreas Müller
11:29 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Hallo,

der Fall x=0 ist der Fall min=max. => avg=min(=max). Also trivial, die Dezimalstellen sollten die gleich... Andreas Kohlbecker
11:09 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit: please review Andreas Kohlbecker
11:08 AM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit: Applied in changeset commit:cdm-dataportal|793df79047e8716b03d8ba09feeec495d5f410aa. Andreas Kohlbecker
01:08 PM Revision bd04ba61 (taxeditor): fix NPE during exception handling: Katja Luther
12:53 PM Revision 86fd29ff (cdmlib): ref #1447 change duplicate finding of names from sec to source reference and allow >2 sources: Andreas Müller
12:00 PM Revision 8480271c (cdm-dataportal): fix #8771 removing comment: Andreas Kohlbecker
11:08 AM Revision 793df790 (cdm-dataportal): fix #8771 display of average value with minimum amount of significant figures: Andreas Kohlbecker

01/08/2020

06:02 PM Revision 2f4646e0 (cdm-dataportal): ref #8786 renaming all min_max_*() functions to statistical_values_*(): Andreas Kohlbecker
05:48 PM task #8786 (Resolved): Display of mean value with min max: Done!
The trivial case where only one value exists or when Min = Max or when TypicalLowerBoundary = TypicalUpperBo... Andreas Kohlbecker
03:32 PM task #8786: Display of mean value with min max: ich habe in der Ticketbeschreibung nochmals alles zusammengefasst Andreas Kohlbecker
03:22 PM task #8786: Display of mean value with min max: Sieht gut aus.

Kleine Anmerkung: ich bin mir nicht sicher, ob wir immer eine Sample Size haben. Gerade bei de... Andreas Kohlbecker
03:22 PM task #8786: Display of mean value with min max: Hallo,

Könnten wir den bis-Strick jeweils in die Klammer hinein nehmen, das ist die gebräuchlichere Variante?... Andreas Kohlbecker
03:21 PM task #8786: Display of mean value with min max: Achso, ne, wollten wir nicht eckige Klammern um den Mittelwert? Und die Frage steht noch aus, ob in die eckigen Klamm... Andreas Kohlbecker
03:21 PM task #8786: Display of mean value with min max: um sicher zu gehen, dass wir jetzt wirklich vom Selben sprechen.

Das Beispiel aus der Ticket Beschreibung (1.... Andreas Kohlbecker
10:28 AM task #8786: Display of mean value with min max: Hallo Norbert,

wie gesagt, finde ich unschön, dass es sprachabhängig ist (in einem Deutschen Portal müssten w... Andreas Kohlbecker
10:27 AM task #8786: Display of mean value with min max: Hallo Andreas,

ja, hab ich auch so gefunden, wäre ich auch mit einverstanden. Ich hatte "mean" ausgeschrieben... Andreas Kohlbecker
10:27 AM task #8786: Display of mean value with min max: Hallo,

vielleicht ist „x bar“ x̄ noch besser. Das sollte mathematisch eindeutig sein.
μ wird wohl auch man... Andreas Kohlbecker
10:26 AM task #8786: Display of mean value with min max: Hallo Andreas,

Mittelwert: ja, solche Details der Darstellung hatte wir noch gar nicht besprechen können.
... Andreas Kohlbecker
10:25 AM task #8786: Display of mean value with min max: Hallo,

es kann gut sein, dass die Schreibweise mit dem Mittelwert zwischen den Min und Max Werten nicht abges... Andreas Kohlbecker
05:40 PM Revision cd3ea2e8 (cdm-dataportal): ref #8739 updated explanatory text for statistical values: Andreas Kohlbecker
05:32 PM Revision 2eb6acb7 (cdm-dataportal): ref #8786 improved display of min, max, mean and other statistical values: Andreas Kohlbecker
05:31 PM Revision b736d380 (cdm-dataportal): typos in README: Andreas Kohlbecker
03:14 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Eine Funktion zum runden oder trunkieren nach signifikanten Stellen gibt es in php nicht aber in diesem Stackoverflow... Andreas Kohlbecker
02:59 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Hallo,

der Vorschlag die Differenz Max - Min für die Berechnung der signifikanten Stellen des Mittelwertes ... Andreas Kohlbecker
02:57 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Eigentlich ist das entscheidende ja, wie weit min und max von einander entfernt sind. Bei 98-190 reicht eine Zahl ohn... Andreas Kohlbecker
02:56 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit: Weitere Beispiele für die Ticket-Beschreibung Andreas Kohlbecker
01:29 PM bug #8800 (Resolved): If supplemental data view shows reference it is not possible to select another reference: Applied in changeset commit:cdmlib|db7b0ee79b966b68a1d2958214303d4b101f1022. Andreas Müller
12:32 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference: I checked Walters log-file (see below). So he also got an error in ReferenceDaoHibernateImpl.getUuidAndTitle but in a... Andreas Müller
12:14 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference: AM:
Das klingt ein bisschen wie der Fehler den ich gestern mit dem nicht möglichen Aufrufen des Referenzdialoges f... Andreas Müller
09:31 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select another reference: mail WB:
Hallo,
ich habe ein merkwürdiges Problem beim Editieren einer Referenz, und zwar sowohl aus dem Bulk Edi... Katja Luther
01:28 PM Revision db7b0ee7 (cdmlib): fix #8800 fix NPE in Reference.getUuidAndTitle: Andreas Müller
12:19 PM bug #8801: Deselected menu items are not reactivated in navigator: Being resolved this can go into 5.12, correct? Andreas Müller
11:15 AM bug #8801 (Resolved): Deselected menu items are not reactivated in navigator: Katja Luther
11:15 AM bug #8801: Deselected menu items are not reactivated in navigator: the problem seems to be that the menu items are submenu items of "edit subtree" and when for all menu items visibilit... Katja Luther
09:33 AM bug #8801 (Closed): Deselected menu items are not reactivated in navigator: mail AM:
noch ein Problem. Wenn ich ein Multiselect auf Taxa im Navigator mache wird das Set for Subtree Menü di... Katja Luther
11:07 AM Revision caffc76b (taxeditor): ref #8801: disabled submenu items should be visible again: Katja Luther

12/20/2019

04:28 PM bug #8791: Measurement units are not assigned to quantitative data in matrix: This urgent as the current implementation creates incomplete data that needs to be repaired manually (see #8790) Andreas Müller
04:17 PM bug #8791 (Closed): Measurement units are not assigned to quantitative data in matrix: In a first quick fix we should implement it such that if the feature has exactly 1 recommended measurment unit this u... Andreas Müller
04:16 PM bug #8790 (Closed): Update measurement units for existing quantitative data missing a unit: This is how to find them:
~~~
SELECT f.id featureId, f.titleCache, mu.id unitId, mu.titleCache unit, deb.*
FROM... Andreas Müller
03:55 PM feature request #8789 (New): How can we semantically handle characters like "partial inflorescence arrangement - distance 1st to 2nd bract": This is currently a quantitative character in Cactaceae which uses
structure: partial inflorescence
Property: arr... Andreas Müller
03:26 PM bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore: Problem description:
Das Problem ist, dass hier auf die geclonten (archivierten) Specimen Descriptions verlinkt wi... Andreas Müller
03:01 PM feature request #8787: Improve layout for ExactValue on Description Pages: This should only be applicable for the specimen pages themselves: http://test.e-taxonomy.eu/dataportal/preview/greece... Andreas Müller
03:00 PM feature request #8787: Improve layout for ExactValue on Description Pages: A maybe temporary example ist http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/descriptio... Andreas Müller
02:56 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages: Currently formatting is not nice:
![](picture908-1.png)
A first suggestion from an Email:
Da sollten wir uns... Andreas Müller
02:59 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]: Handling for Exact Value is still open, but handled now in own ticket #8787 Andreas Müller
10:08 AM Revision 69019789 (cdmlib): ref #8782: add isDeletable to descriptionService: Katja Luther
12:31 AM Revision 4a2b3c5b (cdmlib): ref #8469 support reuse of quantitative characters in subbranches: Andreas Müller

12/19/2019

05:14 PM bug #8739 (Resolved): remaining issues for description detail page: AS far as I see, this ticket is either solved or remaining issues are copied to new tickets.
Therefore I suggest c... Andreas Kohlbecker
05:12 PM Revision 753a8083 (cdm-dataportal): ref #8739 description page better and stylable DOM: Andreas Kohlbecker
05:08 PM task #8786 (Feedback): Display of mean value with min max: Andreas Kohlbecker
05:08 PM task #8786 (Resolved): Display of mean value with min max: > abgesehen davon, dass die Mittelwertangabe zwischen Min und Max unüblich ist, ... Eine bessere Darstellung wär... Andreas Kohlbecker
03:59 PM Revision 16ab19f1 (cdm-dataportal): ref #8781 first feature element starts with upper case letter - bug fix: Andreas Kohlbecker
03:00 PM feature request #8769 (New): Biocase import configuration should be shown when clicking on import button: Andreas Kohlbecker wrote:
> I fear that just opening the import config dialog does not really help.
> I suggest to ... Andreas Müller
02:59 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I find it very useful for debugging that computed description... Andreas Kohlbecker
02:28 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: Andreas Kohlbecker wrote:
> I find it very useful for debugging that computed descriptions can be viewed and modifie... Andreas Müller
02:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix: Katja Luther wrote:
> this should be possible in character matrix. I have to test this.
yes, it should be handled... Andreas Müller
02:35 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix: this should be possible in character matrix. I have to test this. Katja Luther
11:58 AM bug #8785: Move functionality of buttons to context menu of the character matrix: Also this one I put to current milestone for same reason as #8784 Andreas Müller
11:58 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix: The issue is described in #8784 but I created a new ticket as it is as deleting a specimen description (which is hand... Andreas Müller
02:30 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor: As this is a critical issue I suggest to put it into 5.13. (5.12 is probably not possible as the task is difficult). ... Andreas Müller
02:23 PM bug #8784: Deleting a specimen description not possible: fixing the delete handling in deletehandler of the factual data view. Now the deletion of descriptions and descriptio... Katja Luther
11:57 AM bug #8784 (In Progress): Deleting a specimen description not possible: this is already in process because I already found this problem while working on #8782 Katja Luther
11:54 AM bug #8784: Deleting a specimen description not possible: I put this into the current milestone because it is a blocker for undoing incorrect/unwanted data entries. Andreas Müller
11:53 AM bug #8784 (Closed): Deleting a specimen description not possible: Currently it seems to be impossible to delete a specimen description.
In the specimen LIST editor specimen descrip... Andreas Müller
02:21 PM Revision a776559e (taxeditor): ref #8784: fix deleteHandler for factual data: Katja Luther
02:21 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements: Looks fine now Andreas Müller
01:51 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements: Andreas Müller wrote:
> Now the semicolon is missing everywhere, it should be removed ONLY at the end:
>
Proble... Andreas Kohlbecker
01:19 PM feature request #8781: Descriptions (aggregated): futher improvements: An example can be found here: http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/taxon/8718... Andreas Müller
01:19 PM feature request #8781 (Feedback): Descriptions (aggregated): futher improvements: Andreas Müller
01:19 PM feature request #8781: Descriptions (aggregated): futher improvements: Now the semicolon is missing everywhere, it should be removed ONLY at the end:
![](picture967-1.png)
The capita... Andreas Müller
02:12 PM Revision bea70813 (cdm-dataportal): ref #8739 labels of CategoricalData and QuatitativeData stylable: Andreas Kohlbecker
01:50 PM Revision caf1ed73 (cdm-dataportal): ref #8781 restoring lost semicolons in description element string representations: Andreas Kohlbecker
10:20 AM Revision 3db61e83 (cdm-dataportal): ref #8739 description page: improved dom and using stylesheets instead of html tags: Andreas Kohlbecker
01:10 AM Revision 6f40bb03 (cdmlib): cleanup: Andreas Müller
01:10 AM Revision e04e5f03 (cdmlib): ref #8469 use correct handling for removeChildNode: Andreas Müller
12:53 AM Revision ca83d76f (cdmlib): ref #8469 add useTaxonHierarchy for PolytomousKeyGenerator: Andreas Müller
12:51 AM Revision e667c033 (cdmlib): ref #8469 fix remove taxon node from taxon for TaxonNode.remove(): Andreas Müller
12:49 AM Revision af44169e (cdmlib): cleanup: Andreas Müller

12/18/2019

05:03 PM Revision ad7fa57c (cdm-dataportal): ref #8739 description page: solving problems with unit display, order and spacing: Andreas Kohlbecker
04:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor: I find it very useful for debugging that computed descriptions can be viewed and modified in the editor. Can't we all... Andreas Kohlbecker
02:43 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor: This was observed with a locally running cdmlib-remote-webapp instance configured with 700 MB of Heap:
![](pic... Andreas Kohlbecker
01:39 PM bug #8782 (Closed): Delete a description included in a CdmSource should not be possible: mail AM:
ich habe gerade DescriptionBase gelöscht (aus dem Facts View heraus), die noch verlinkt waren über eine C... Katja Luther
01:24 PM bug #8780: Repair sortindex does not work on TermTree index: This should be fixed. Please review. Andreas Müller
11:57 AM bug #8780 (Resolved): Repair sortindex does not work on TermTree index: Applied in changeset commit:cdmlib|dad659722b698863a2dee711782748b0de216a71. Andreas Müller
09:16 AM bug #8780 (Closed): Repair sortindex does not work on TermTree index: Andreas Müller
01:11 PM Revision 7b8c575b (cdmlib): cleanup: Andreas Müller
01:00 PM Revision cc6c7d5e (cdmlib): cleanup: Andreas Müller
01:00 PM Revision 6c143263 (cdmlib): ref #8780 fix autowire issue for repository (workaround): Andreas Müller
12:47 PM Revision 86f7ea85 (cdmlib): cleanup: Andreas Müller
12:43 PM Revision a483ffcd (cdmlib): ref #8780 test nodes recursive and generic: Andreas Müller
12:42 PM Revision 365cff58 (cdmlib): cleanup: Andreas Müller
12:41 PM Revision a2928800 (cdmlib): fix ConcurrentSessionTest testdata: Andreas Müller
12:21 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements: ticket complete Andreas Kohlbecker
12:08 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements: Hallo Andreas,
1. am Ende der aggregated descriptions gibt es derzeit im noch ein überflüssiges Komma. Könntest du... Andreas Kohlbecker
12:20 PM Revision 2bc2b13e (cdm-dataportal): ref #8781 first feature element starts with upper case letter: Andreas Kohlbecker
12:18 PM Revision e425fd81 (cdmlib): cleanup: Andreas Müller
12:17 PM Revision 1d287b23 (cdmlib): ref #8780 reduce test dataset: Andreas Müller
12:09 PM Revision 2e5f796f (cdm-dataportal): ref #8781 removing semicolon from end of description: Andreas Kohlbecker
11:59 AM Revision 3076588b (cdmlib): ref #8780 add SortIndexUpdaterWrapperTest for term nodes: Andreas Müller
11:58 AM Revision b171b803 (cdmlib): ref #8780 cleanup SortIndexUpdaterWrapper: Andreas Müller
11:58 AM Revision 386112b5 (cdmlib): replace featureTreeService by termTreeService: Andreas Müller
11:57 AM Revision 0a165781 (cdmlib): cleanup: Andreas Müller
11:46 AM Revision 87aa88d6 (cdm-dataportal): ref #8739 aggregated description feature block: explainig bracketed numbers: Andreas Kohlbecker
11:22 AM feature request #7981 (In Progress): Add configuration UI for matrix description aggregation: Katja Luther
11:21 AM Revision 6722d9a5 (cdm-dataportal): ref #8739 description page: explainig bracketed numbers: Andreas Kohlbecker
09:47 AM Revision 1da7de81 (cdmlib): ref #8780 cleanup: Andreas Müller
09:47 AM Revision dad65972 (cdmlib): fix #8780 fix term node sortindex updater (TermNode->TermRelation): Andreas Müller
09:36 AM Revision 558d4b79 (cdmlib): cleanup: Andreas Müller
09:26 AM Revision 61cfb399 (cdmlib): cleanup: Andreas Müller

12/17/2019

04:01 PM Revision 01e26d23 (taxeditor): ref #7981: remove aggregation call in wizard: Katja Luther
03:55 PM bug #8566 (Rejected): Recursive aggregation for common parent taxon does not work if not in data set: This is expected behavior, not a bug IMO. However, with the UI aggregation trigger we may have more possibilities to ... Andreas Müller
03:47 PM feature request #8686: Support CdmLink sources in bibliography: An example could be shown here: http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/taxon/... Andreas Müller
03:46 PM feature request #8686 (Feedback): Support CdmLink sources in bibliography: Andreas Kohlbecker wrote:
> **Note**: The links to the taxa are having a fragment which directly focuses on the "Agg... Andreas Müller
03:42 PM Revision 20bfe15b (cdm-dataportal): fix #8779 harmonization of taxon display in descriptions: Andreas Kohlbecker
03:40 PM bug #8779 (Resolved): Description page: use render_taxon_or_name() for creating the page and description title and taxon links: after harmonization the top of the page now looks like
![](picture451-1.png)
If more detailed display of the ta... Andreas Kohlbecker
03:20 PM bug #8779 (Closed): Description page: use render_taxon_or_name() for creating the page and description title and taxon links: in `compose_description_table()` the `render_taxon_or_name()` method must be used for portal wide consistend display ... Andreas Kohlbecker
03:35 PM feature request #8777: Make visiblity of CDM Source configurable: Andreas Müller wrote:
> ... hmm, maybe an even better solution is to show the field only if data exists. Is this pos... Andreas Müller
03:08 PM feature request #8777: Make visiblity of CDM Source configurable: ... hmm, maybe an even better solution is to show the field only if data exists. Is this possible? Andreas Müller
03:00 PM feature request #8777 (Resolved): Make visiblity of CDM Source configurable: see #8688, for some projects the CDM Source should not be visible (because not used). This is similar to ID in Source... Andreas Müller
03:15 PM feature request #8688 (Feedback): Make OriginalSourceBase.cdmSource visible in TaxEditor: The current solution shows titleCache+uuid for identifiable entities. This is too much. For now we need only the titl... Andreas Müller
03:12 PM feature request #8778 (New): Have explicit subclass for CdmSourceLink sources: copied from #8688: Possible open questions related: do we want to have a new subclass for OriginalSourceBase which on... Andreas Müller
02:27 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon: I think we can close this. If problems occurr we may reopen or immediately fix. Andreas Müller
02:14 PM feature request #8044 (Feedback): Add "Move to..." menu to term editor: * For this usecase the title and the description in the term selection wizard needs to be adapted. It should be somet... Andreas Müller
01:56 PM bug #7994 (Duplicate): Implement allowDuplicates for term trees in TaxEditor: This is a duplicate for #8477, #8776 Andreas Müller
01:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor: Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:47 PM feature request #8476 (In Progress): Implement support for TermCollection.isFlat in TaxEditor: Only the flag is editable until now so I put this back to InProgress. Andreas Müller
01:53 PM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees: Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:50 PM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees: Only editing the flag is implemented until now so I put it back to InProgress Andreas Müller
01:52 PM bug #8776: Open issues for TermCollection.allowDuplicates handling in TaxEditor: Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:25 PM bug #8776 (Closed): Open issues for TermCollection.allowDuplicates handling in TaxEditor: * ~~The error message currently looks like an unhandled error. The message should only inform about the fact that dup... Andreas Müller
01:41 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor: Generally this works but there are some open issues. I moved them all to a new ticket: #8776 Andreas Müller
12:19 PM feature request #8242 (Closed): Implement filtered combo boxes for state selection in CharacterMatrix: This is generally implemented. There are follow up tickets like #8254 and #8775 Andreas Müller
12:14 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix: This seems to work now. There are issues with the general (rapid) data entry of categorical data into the matrix. The... Andreas Müller
12:12 PM feature request #8775 (In Progress): Improve (rapid) data entry into characater matrix for categorical data: Quantitative data can be entered into the matrix very fast by only using the keyboard via return, left, right and num... Andreas Müller
11:50 AM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors: Andreas Müller
11:44 AM bug #8751: Replace saveOrUpdate() in AbstractTermTreeEditor: This is probably more or less a duplicate for #8774 and will be fixed by #8774 Andreas Müller
11:41 AM bug #8663 (Duplicate): LIE when trying to save a tree node: This is probably a duplicate for #8744 Andreas Müller
11:38 AM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor: The LIE itself seems to be fixed by switching to merge() but there are still very serious issues related to saving of... Andreas Müller
11:28 AM bug #8744: LazyInitializationException (LIE) saving the Character Editor: Andreas Müller wrote:
> hmm, it does not really seem to be the problem, but I found that there seems no session to b... Andreas Müller
11:36 AM bug #8774 (Closed): Reimplement term tree editors to implement the general save strategy: Currently term trees save changes in the hierarchy (including new terms/nodes) immediately in the DB. This is against... Andreas Müller
11:24 AM bug #8748 (Closed): Supported state vocabularies should be ordered: This is fixed and is a very nice and important feature. Andreas Müller
11:22 AM feature request #8755 (Closed): Show all structure/property trees in CharacterEditor: Follow up issues are moved to extra tickets so we can close this one. Andreas Müller
11:20 AM feature request #8773 (New): [DISCUSS] Allow editing structure and properties tree in Character Editor: copied from #8755#note-3:
"with the current state of the structure tree it is sometimes wanted to extend this tree... Andreas Müller
10:23 AM feature request #8772 (New): Recognize Character duplicates: Characters constructed from structure and property (and structural modifier) can be recognized as duplicates by this ... Andreas Müller
09:10 AM feature request #8771 (Feedback): display of average value with precision so that it differs from min and max by one digit: do you agree with my suggestion? Andreas Kohlbecker
09:07 AM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit: The display of decimal place for average value should be adjusted so that it differs from the values on min and max (... Andreas Kohlbecker

12/16/2019

05:05 PM feature request #8769 (Feedback): Biocase import configuration should be shown when clicking on import button: I fear that just opening the import config dialog does not really help.
I suggest to solve this problem differently:... Andreas Kohlbecker
02:11 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking on import button: The configuration dialog should be opened everytime the import button is clicked.
At the moment the configuration ... Katja Luther
04:58 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]: ready for review Andreas Kohlbecker
01:41 PM bug #8766 (Resolved): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]: Applied in changeset commit:cdm-dataportal|f63479aed323653e11922bb4dc3865537c5904cb. Andreas Kohlbecker
04:33 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found: fixed Andreas Kohlbecker
04:33 PM bug #8770 (Resolved): NameControllers responds with all entities when name uuid is not found: Applied in changeset commit:cdmlib|cc3ce6e30c74308b6697f6007d03d37b00cce8ff. Andreas Kohlbecker
04:25 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found: When the uuid in `portal/name/c0b7aa13-301d-4a0c-a8c6-843e96c34ba8/taxonNameDescriptions.json` is not found in the db... Andreas Kohlbecker
04:32 PM Revision cc3ce6e3 (cdmlib): fix #8770 responding with http code 404 in case name uuid is not found: Andreas Kohlbecker
04:01 PM Revision b0b87ef4 (cdm-dataportal): ref #8658 relaxing palmweb test assertions to conform new data portal code (ignoring inconsistent html in bibliography block): Andreas Kohlbecker
02:42 PM Revision d43a3486 (cdm-dataportal): ref #8658 again using feature name as key for blocks (uuid broke too much tests by now): Andreas Kohlbecker
01:41 PM Revision f63479ae (cdm-dataportal): fix #8766 improving display of statistical measures (sample size, variance, standart deviation): Andreas Kohlbecker
11:41 AM Revision 86bbdab9 (taxeditor): ref #7981: add aggregation wizard to character matrix: Katja Luther
11:39 AM Revision bb7eab5c (taxeditor): ref #7981: externalization of strings: Katja Luther
11:35 AM Revision 70e39ea8 (taxeditor): ref #7981: implement aggregation configuration wizard: Katja Luther
09:26 AM Revision cba88a5e (cdmlib): rename ExternalNameIdentifier to ExternalIdentifier: Katja Luther

12/13/2019

03:47 PM bug #8739: remaining issues for description detail page: removing obsolete conversation records from the issue description since these points are already handled in other iss... Andreas Kohlbecker
03:40 PM bug #8739 (In Progress): remaining issues for description detail page: Andreas Kohlbecker
03:32 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]: Hallo Andreas,
erstmal zu Extrems und so. Eigentlich sind min und max die Extremwerte. TypicalXXXBoundary sind die... Andreas Kohlbecker
03:32 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]: Hallo,
ich habe eine Verständnisfrage zur Ausgabe Quantitativer Daten mit Min, Max und Exact values.
Beispiel w... Andreas Kohlbecker
08:15 AM bug #8766 (Closed): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]: 1. nur [27],
2. das sollte dann irgendwo generell erklärt werden.
Übrigens sollten die anderen counts dann auch... Andreas Kohlbecker
03:22 PM Revision ff197011 (cdmlib): ref #8477 Check if duplicates are allowed before adding terms to trees: Patrick Plitzner
02:41 PM Revision eab86ee2 (cdm-dataportal): ref #8739 removing dead code: Andreas Kohlbecker
02:14 PM task #8768 (New): DISCUSS: place CdmLinks in a separate pseudo feature block?: Norbert [Freitag, 22. November 2019 10:22]
sorry, nee, das gefällt mir überhaupt nicht!!
Einmal schon nicht weg... Andreas Kohlbecker
02:07 PM feature request #8686 (Resolved): Support CdmLink sources in bibliography: **Note**: The links to the taxa are having a fragment which directly focuses on the "Aggregation Description"
As ... Andreas Kohlbecker
02:03 PM feature request #8686: Support CdmLink sources in bibliography: Andreas Müller wrote:
> Support for link to taxa has been added in #8724. So we need to check or implement that also... Andreas Kohlbecker
02:02 PM Revision 4dfb209d (cdmlib): fixing ClassCastException in CdmLinkSource for taxa: Andreas Kohlbecker
01:52 PM Revision fec3fd41 (cdm-dataportal): ref #8686 adding support for Taxon CdmLinks in "Bibliography": Andreas Kohlbecker
01:48 PM Revision d29f2403 (taxeditor): aggregation configuration wizard page super class: Katja Luther
01:04 PM bug #8687: Description page must show all DescriptionElement subclasses: Assigning AK because it is a dataportal ticket Patrick Plitzner
01:02 PM feature request #8655 (Duplicate): Handle duplicates in term tree editor: Patrick Plitzner
12:47 PM bug #7994 (Resolved): Implement allowDuplicates for term trees in TaxEditor: Patrick Plitzner
09:54 AM bug #7994 (In Progress): Implement allowDuplicates for term trees in TaxEditor: Patrick Plitzner
12:46 PM Revision d800b880 (taxeditor): ref #8476, #8474 Set isFlat to false when creating a term tree: Patrick Plitzner
12:46 PM feature request #8474 (Resolved): Make TermCollection.orderRelevant usable for TermTrees: Patrick Plitzner
09:54 AM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees: Patrick Plitzner
12:44 PM feature request #8476 (Resolved): Implement support for TermCollection.isFlat in TaxEditor: Patrick Plitzner
12:42 PM feature request #8477 (Resolved): Implement support for TermCollection.allowDuplicates in TaxEditor: Patrick Plitzner
09:54 AM feature request #8477 (In Progress): Implement support for TermCollection.allowDuplicates in TaxEditor: Patrick Plitzner
12:38 PM Revision a9c3f41a (taxeditor): ref #8477 Set allow duplicates to false when creating a term tree: Patrick Plitzner
12:32 PM Revision 2ba9931c (cdmlib): ref #8477 Check if duplicates are allowed before adding terms to trees: Patrick Plitzner
12:31 PM Revision 46809662 (cdmlib): fix abcd import when gathering date of associated unit is null: Katja Luther
12:22 PM Revision 8de7ec9f (cdmlib): make all MAN uuids public: Andreas Müller
12:22 PM Revision 53838507 (cdmlib): remove unneccary instanceof: Andreas Müller
12:18 PM Revision 236273db (taxeditor): ref #8477 Check if duplicates are allowed before adding terms to trees: Patrick Plitzner
11:40 AM Revision d1d5ffd0 (cdmlib): fix abcd import when gathering date of associated unit is null: Katja Luther
10:23 AM Revision 1e03f16d (taxeditor): ref #8450 Check for duplicate features in matrix startup: Patrick Plitzner
10:03 AM Revision 4f2c16a0 (taxeditor): ref #8476, #8474, #7994, #8477 Add checkboxes for term tree flags: Patrick Plitzner
08:52 AM bug #8767 (Closed): Workflow support for publish flag: When changing an unpublished synonym to a MAN aftwards the MAN is published. This is not correct. The publish flag sh... Andreas Müller

12/12/2019

06:11 PM bug #8718 (Closed): polytomousKey page: better handling of invalid uuids: "Named area" is the term being used in general in the dataportal, but this is another issue - closing this ticket. Andreas Kohlbecker
06:00 PM bug #8718 (Feedback): polytomousKey page: better handling of invalid uuids: Yes it seems to work now.
Only minor issue: instead of Named Area we could say simply "Area". Named area is a bit ... Andreas Müller
06:07 PM feature request #8758: Aggregated Descriptions: order states by frequency: please review or pass to someone else of the additivity team. Andreas Kohlbecker
06:06 PM feature request #8758 (Resolved): Aggregated Descriptions: order states by frequency: Applied in changeset commit:cdm-dataportal|4c9d7e324d3c0e2795465c774284abb0704c7e7c. Andreas Kohlbecker
06:06 PM Revision 4c9d7e32 (cdm-dataportal): fix #8758 aggregated descriptions: states ordered by frequency: Andreas Kohlbecker
05:27 PM Revision 089fb6ea (cdm-dataportal): ref #8765 fixing bug regarding order of toc items: Andreas Kohlbecker
03:56 PM bug #8765 (Resolved): defined weight for feature and pseudo feature blocks and position "Description (aggregated)" after "Description": This is now implemented for all pseudo feature blocks. The position of the blocks can be configured in the setting in... Andreas Kohlbecker
03:45 PM bug #8765 (Resolved): defined weight for feature and pseudo feature blocks and position "Description (aggregated)" after "Description": *recovery from accidentally deleted previous ticket #8658*
----
copied from #8596#note-8
* weight value for ... Andreas Kohlbecker
03:08 PM Revision c3a41ddb (cdm-dataportal): fix #8658 position of all pseudo feature blocks configurable in relation to the chosen feature tree: Andreas Kohlbecker
02:47 PM bug #8313 (Resolved): Multiple categorical data get deleted when clicked on in Character Matrix: Patrick Plitzner
02:45 PM Revision a1171a3c (taxeditor): ref #8313 Adapt display converter to Collection<String> display value: Patrick Plitzner
02:45 PM Revision 74e7e3df (cdmlib): ref #8313 Return a collection of strings for display value: Patrick Plitzner
01:15 PM bug #8764 (Worksforme): moving subtree results in NPE: Moving a subtree in character editor results in NullPointerException.
This problem again comes with null values in... Katja Luther
11:47 AM Revision bf8aea21 (cdm-dataportal): ref #8658 constants for pseudo feature blocks: Andreas Kohlbecker
11:28 AM bug #8735 (Duplicate): Character Node Editor: allow line breaks at slashes in structure representation: Andreas Müller
10:52 AM task #8716: Configure taxeditor to run with GTK2 in linux: Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > On my home desktop PC with Linux Mint, Cinnamon desktop I h... Patrick Plitzner
10:12 AM task #8716: Configure taxeditor to run with GTK2 in linux: Patrick Plitzner wrote:
> On my home desktop PC with Linux Mint, Cinnamon desktop I have no problems but I also did ... Andreas Kohlbecker
10:39 AM Revision b6ebeb25 (taxeditor): add check for potential session exception: Patrick Plitzner
10:26 AM bug #8511: The structure path in the character details view should have a line break: please also close the duplicate if this issue is fixed Patrick Plitzner
10:25 AM bug #8511 (Resolved): The structure path in the character details view should have a line break: Applied in changeset commit:taxeditor|f8139f49d666289b10c06aa59d09986adebfe258. Patrick Plitzner
10:17 AM bug #8511: The structure path in the character details view should have a line break: This issue has a duplicate #8735
please see this ticket for ideas on handling this issue Andreas Kohlbecker
09:18 AM bug #8511 (In Progress): The structure path in the character details view should have a line break: Patrick Plitzner
10:24 AM Revision f8139f49 (taxeditor): fix #8511 Add line break to structure and property path in detail view: Patrick Plitzner
10:04 AM bug #8757 (Closed): ArrayIndexOutOfBoundsException in term combo: Seems to work as expected. Andreas Müller
09:41 AM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Character Editor: It does not work. I changed the order of the properties tree in demo bupleurum 01. After saving an pushing refresh bu... Andreas Müller

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