Activity
From 11/21/2019 to 12/20/2019
12/20/2019
- 04:28 PM bug #8791: Measurement units are not assigned to quantitative data in matrix
- This urgent as the current implementation creates incomplete data that needs to be repaired manually (see #8790)
- 04:17 PM bug #8791 (Closed): Measurement units are not assigned to quantitative data in matrix
- In a first quick fix we should implement it such that if the feature has exactly 1 recommended measurment unit this u...
- 04:16 PM bug #8790 (Closed): Update measurement units for existing quantitative data missing a unit
- This is how to find them:
~~~
SELECT f.id featureId, f.titleCache, mu.id unitId, mu.titleCache unit, deb.*
FROM... - 03:55 PM feature request #8789 (New): How can we semantically handle characters like "partial inflorescence arrangement - distance 1st to 2nd bract"
- This is currently a quantitative character in Cactaceae which uses
structure: partial inflorescence
Property: arr... - 03:26 PM bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore
- Problem description:
Das Problem ist, dass hier auf die geclonten (archivierten) Specimen Descriptions verlinkt wi... - 03:01 PM feature request #8787: Improve layout for ExactValue on Description Pages
- This should only be applicable for the specimen pages themselves: http://test.e-taxonomy.eu/dataportal/preview/greece...
- 03:00 PM feature request #8787: Improve layout for ExactValue on Description Pages
- A maybe temporary example ist http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/descriptio...
- 02:56 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages
- Currently formatting is not nice:
![](picture908-1.png)
A first suggestion from an Email:
Da sollten wir uns... - 02:59 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Handling for Exact Value is still open, but handled now in own ticket #8787
12/19/2019
- 05:14 PM bug #8739 (Resolved): remaining issues for description detail page
- AS far as I see, this ticket is either solved or remaining issues are copied to new tickets.
Therefore I suggest c... - 05:08 PM task #8786 (Feedback): Display of mean value with min max
- 05:08 PM task #8786 (Resolved): Display of mean value with min max
> abgesehen davon, dass die Mittelwertangabe zwischen Min und Max unüblich ist, ... Eine bessere Darstellung wär...- 03:00 PM feature request #8769 (New): Biocase import configuration should be shown when clicking on import button
- Andreas Kohlbecker wrote:
> I fear that just opening the import config dialog does not really help.
> I suggest to ... - 02:59 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I find it very useful for debugging that computed description... - 02:28 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Kohlbecker wrote:
> I find it very useful for debugging that computed descriptions can be viewed and modifie... - 02:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> this should be possible in character matrix. I have to test this.
yes, it should be handled... - 02:35 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- this should be possible in character matrix. I have to test this.
- 11:58 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Also this one I put to current milestone for same reason as #8784
- 11:58 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- The issue is described in #8784 but I created a new ticket as it is as deleting a specimen description (which is hand...
- 02:30 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- As this is a critical issue I suggest to put it into 5.13. (5.12 is probably not possible as the task is difficult). ...
- 02:23 PM bug #8784: Deleting a specimen description not possible
- fixing the delete handling in deletehandler of the factual data view. Now the deletion of descriptions and descriptio...
- 11:57 AM bug #8784 (In Progress): Deleting a specimen description not possible
- this is already in process because I already found this problem while working on #8782
- 11:54 AM bug #8784: Deleting a specimen description not possible
- I put this into the current milestone because it is a blocker for undoing incorrect/unwanted data entries.
- 11:53 AM bug #8784 (Closed): Deleting a specimen description not possible
- Currently it seems to be impossible to delete a specimen description.
In the specimen LIST editor specimen descrip... - 02:21 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
- Looks fine now
- 01:51 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
- Andreas Müller wrote:
> Now the semicolon is missing everywhere, it should be removed ONLY at the end:
>
Proble... - 01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
- An example can be found here: http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/taxon/8718...
- 01:19 PM feature request #8781 (Feedback): Descriptions (aggregated): futher improvements
- 01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
- Now the semicolon is missing everywhere, it should be removed ONLY at the end:
![](picture967-1.png)
The capita...
12/18/2019
- 04:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- I find it very useful for debugging that computed descriptions can be viewed and modified in the editor. Can't we all...
- 02:43 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
This was observed with a locally running cdmlib-remote-webapp instance configured with 700 MB of Heap:
![](pic...- 01:39 PM bug #8782 (Closed): Delete a description included in a CdmSource should not be possible
- mail AM:
ich habe gerade DescriptionBase gelöscht (aus dem Facts View heraus), die noch verlinkt waren über eine C... - 01:24 PM bug #8780: Repair sortindex does not work on TermTree index
- This should be fixed. Please review.
- 11:57 AM bug #8780 (Resolved): Repair sortindex does not work on TermTree index
- Applied in changeset commit:cdmlib|dad659722b698863a2dee711782748b0de216a71.
- 09:16 AM bug #8780 (Closed): Repair sortindex does not work on TermTree index
- 12:21 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
- ticket complete
- 12:08 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
- Hallo Andreas,
1. am Ende der aggregated descriptions gibt es derzeit im noch ein überflüssiges Komma. Könntest du... - 11:22 AM feature request #7981 (In Progress): Add configuration UI for matrix description aggregation
12/17/2019
- 03:55 PM bug #8566 (Rejected): Recursive aggregation for common parent taxon does not work if not in data set
- This is expected behavior, not a bug IMO. However, with the UI aggregation trigger we may have more possibilities to ...
- 03:47 PM feature request #8686: Support CdmLink sources in bibliography
- An example could be shown here: http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/taxon/...
- 03:46 PM feature request #8686 (Feedback): Support CdmLink sources in bibliography
- Andreas Kohlbecker wrote:
> **Note**: The links to the taxa are having a fragment which directly focuses on the "Agg... - 03:40 PM bug #8779 (Resolved): Description page: use render_taxon_or_name() for creating the page and description title and taxon links
- after harmonization the top of the page now looks like
![](picture451-1.png)
If more detailed display of the ta... - 03:20 PM bug #8779 (Closed): Description page: use render_taxon_or_name() for creating the page and description title and taxon links
- in `compose_description_table()` the `render_taxon_or_name()` method must be used for portal wide consistend display ...
- 03:35 PM feature request #8777: Make visiblity of CDM Source configurable
- Andreas Müller wrote:
> ... hmm, maybe an even better solution is to show the field only if data exists. Is this pos... - 03:08 PM feature request #8777: Make visiblity of CDM Source configurable
- ... hmm, maybe an even better solution is to show the field only if data exists. Is this possible?
- 03:00 PM feature request #8777 (Resolved): Make visiblity of CDM Source configurable
- see #8688, for some projects the CDM Source should not be visible (because not used). This is similar to ID in Source...
- 03:15 PM feature request #8688 (Feedback): Make OriginalSourceBase.cdmSource visible in TaxEditor
- The current solution shows titleCache+uuid for identifiable entities. This is too much. For now we need only the titl...
- 03:12 PM feature request #8778 (New): Have explicit subclass for CdmSourceLink sources
- copied from #8688: Possible open questions related: do we want to have a new subclass for OriginalSourceBase which on...
- 02:27 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
- I think we can close this. If problems occurr we may reopen or immediately fix.
- 02:14 PM feature request #8044 (Feedback): Add "Move to..." menu to term editor
- * For this usecase the title and the description in the term selection wizard needs to be adapted. It should be somet...
- 01:56 PM bug #7994 (Duplicate): Implement allowDuplicates for term trees in TaxEditor
- This is a duplicate for #8477, #8776
- 01:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
- Note: saving often does not work due to issues to be solved in #8774
- 01:47 PM feature request #8476 (In Progress): Implement support for TermCollection.isFlat in TaxEditor
- Only the flag is editable until now so I put this back to InProgress.
- 01:53 PM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
- Note: saving often does not work due to issues to be solved in #8774
- 01:50 PM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees
- Only editing the flag is implemented until now so I put it back to InProgress
- 01:52 PM bug #8776: Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Note: saving often does not work due to issues to be solved in #8774
- 01:25 PM bug #8776 (Closed): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- * ~~The error message currently looks like an unhandled error. The message should only inform about the fact that dup...
- 01:41 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
- Generally this works but there are some open issues. I moved them all to a new ticket: #8776
- 12:19 PM feature request #8242 (Closed): Implement filtered combo boxes for state selection in CharacterMatrix
- This is generally implemented. There are follow up tickets like #8254 and #8775
- 12:14 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
- This seems to work now. There are issues with the general (rapid) data entry of categorical data into the matrix. The...
- 12:12 PM feature request #8775 (In Progress): Improve (rapid) data entry into characater matrix for categorical data
- Quantitative data can be entered into the matrix very fast by only using the keyboard via return, left, right and num...
- 11:50 AM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors
- 11:44 AM bug #8751: Replace saveOrUpdate() in AbstractTermTreeEditor
- This is probably more or less a duplicate for #8774 and will be fixed by #8774
- 11:41 AM bug #8663 (Duplicate): LIE when trying to save a tree node
- This is probably a duplicate for #8744
- 11:38 AM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor
- The LIE itself seems to be fixed by switching to merge() but there are still very serious issues related to saving of...
- 11:28 AM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- Andreas Müller wrote:
> hmm, it does not really seem to be the problem, but I found that there seems no session to b... - 11:36 AM bug #8774 (Closed): Reimplement term tree editors to implement the general save strategy
- Currently term trees save changes in the hierarchy (including new terms/nodes) immediately in the DB. This is against...
- 11:24 AM bug #8748 (Closed): Supported state vocabularies should be ordered
- This is fixed and is a very nice and important feature.
- 11:22 AM feature request #8755 (Closed): Show all structure/property trees in CharacterEditor
- Follow up issues are moved to extra tickets so we can close this one.
- 11:20 AM feature request #8773 (New): [DISCUSS] Allow editing structure and properties tree in Character Editor
- copied from #8755#note-3:
"with the current state of the structure tree it is sometimes wanted to extend this tree... - 10:23 AM feature request #8772 (New): Recognize Character duplicates
- Characters constructed from structure and property (and structural modifier) can be recognized as duplicates by this ...
- 09:10 AM feature request #8771 (Feedback): display of average value with precision so that it differs from min and max by one digit
- do you agree with my suggestion?
- 09:07 AM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit
- The display of decimal place for average value should be adjusted so that it differs from the values on min and max (...
12/16/2019
- 05:05 PM feature request #8769 (Feedback): Biocase import configuration should be shown when clicking on import button
- I fear that just opening the import config dialog does not really help.
I suggest to solve this problem differently:... - 02:11 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking on import button
- The configuration dialog should be opened everytime the import button is clicked.
At the moment the configuration ... - 04:58 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- ready for review
- 01:41 PM bug #8766 (Resolved): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Applied in changeset commit:cdm-dataportal|f63479aed323653e11922bb4dc3865537c5904cb.
- 04:33 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found
- fixed
- 04:33 PM bug #8770 (Resolved): NameControllers responds with all entities when name uuid is not found
- Applied in changeset commit:cdmlib|cc3ce6e30c74308b6697f6007d03d37b00cce8ff.
- 04:25 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found
- When the uuid in `portal/name/c0b7aa13-301d-4a0c-a8c6-843e96c34ba8/taxonNameDescriptions.json` is not found in the db...
12/13/2019
- 03:47 PM bug #8739: remaining issues for description detail page
- removing obsolete conversation records from the issue description since these points are already handled in other iss...
- 03:40 PM bug #8739 (In Progress): remaining issues for description detail page
- 03:32 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Hallo Andreas,
erstmal zu Extrems und so. Eigentlich sind min und max die Extremwerte. TypicalXXXBoundary sind die... - 03:32 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Hallo,
ich habe eine Verständnisfrage zur Ausgabe Quantitativer Daten mit Min, Max und Exact values.
Beispiel w... - 08:15 AM bug #8766 (Closed): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- 1. nur [27],
2. das sollte dann irgendwo generell erklärt werden.
Übrigens sollten die anderen counts dann auch... - 02:14 PM task #8768 (New): DISCUSS: place CdmLinks in a separate pseudo feature block?
- Norbert [Freitag, 22. November 2019 10:22]
sorry, nee, das gefällt mir überhaupt nicht!!
Einmal schon nicht weg... - 02:07 PM feature request #8686 (Resolved): Support CdmLink sources in bibliography
- **Note**: The links to the taxa are having a fragment which directly focuses on the "Aggregation Description"
As ... - 02:03 PM feature request #8686: Support CdmLink sources in bibliography
- Andreas Müller wrote:
> Support for link to taxa has been added in #8724. So we need to check or implement that also... - 01:04 PM bug #8687: Description page must show all DescriptionElement subclasses
- Assigning AK because it is a dataportal ticket
- 01:02 PM feature request #8655 (Duplicate): Handle duplicates in term tree editor
- 12:47 PM bug #7994 (Resolved): Implement allowDuplicates for term trees in TaxEditor
- 09:54 AM bug #7994 (In Progress): Implement allowDuplicates for term trees in TaxEditor
- 12:46 PM feature request #8474 (Resolved): Make TermCollection.orderRelevant usable for TermTrees
- 09:54 AM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees
- 12:44 PM feature request #8476 (Resolved): Implement support for TermCollection.isFlat in TaxEditor
- 12:42 PM feature request #8477 (Resolved): Implement support for TermCollection.allowDuplicates in TaxEditor
- 09:54 AM feature request #8477 (In Progress): Implement support for TermCollection.allowDuplicates in TaxEditor
- 08:52 AM bug #8767 (Closed): Workflow support for publish flag
- When changing an unpublished synonym to a MAN aftwards the MAN is published. This is not correct. The publish flag sh...
12/12/2019
- 06:11 PM bug #8718 (Closed): polytomousKey page: better handling of invalid uuids
- "Named area" is the term being used in general in the dataportal, but this is another issue - closing this ticket.
- 06:00 PM bug #8718 (Feedback): polytomousKey page: better handling of invalid uuids
- Yes it seems to work now.
Only minor issue: instead of Named Area we could say simply "Area". Named area is a bit ... - 06:07 PM feature request #8758: Aggregated Descriptions: order states by frequency
- please review or pass to someone else of the additivity team.
- 06:06 PM feature request #8758 (Resolved): Aggregated Descriptions: order states by frequency
- Applied in changeset commit:cdm-dataportal|4c9d7e324d3c0e2795465c774284abb0704c7e7c.
- 03:56 PM bug #8765 (Resolved): defined weight for feature and pseudo feature blocks and position "Description (aggregated)" after "Description"
- This is now implemented for all pseudo feature blocks. The position of the blocks can be configured in the setting in...
- 03:45 PM bug #8765 (Resolved): defined weight for feature and pseudo feature blocks and position "Description (aggregated)" after "Description"
- *recovery from accidentally deleted previous ticket #8658*
----
copied from #8596#note-8
* weight value for ... - 02:47 PM bug #8313 (Resolved): Multiple categorical data get deleted when clicked on in Character Matrix
- 01:15 PM bug #8764 (Worksforme): moving subtree results in NPE
- Moving a subtree in character editor results in NullPointerException.
This problem again comes with null values in... - 11:28 AM bug #8735 (Duplicate): Character Node Editor: allow line breaks at slashes in structure representation
- 10:52 AM task #8716: Configure taxeditor to run with GTK2 in linux
- Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > On my home desktop PC with Linux Mint, Cinnamon desktop I h... - 10:12 AM task #8716: Configure taxeditor to run with GTK2 in linux
- Patrick Plitzner wrote:
> On my home desktop PC with Linux Mint, Cinnamon desktop I have no problems but I also did ... - 10:26 AM bug #8511: The structure path in the character details view should have a line break
- please also close the duplicate if this issue is fixed
- 10:25 AM bug #8511 (Resolved): The structure path in the character details view should have a line break
- Applied in changeset commit:taxeditor|f8139f49d666289b10c06aa59d09986adebfe258.
- 10:17 AM bug #8511: The structure path in the character details view should have a line break
- This issue has a duplicate #8735
please see this ticket for ideas on handling this issue - 09:18 AM bug #8511 (In Progress): The structure path in the character details view should have a line break
- 10:04 AM bug #8757 (Closed): ArrayIndexOutOfBoundsException in term combo
- Seems to work as expected.
- 09:41 AM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Character Editor
- It does not work. I changed the order of the properties tree in demo bupleurum 01. After saving an pushing refresh bu...
12/11/2019
- 09:54 PM bug #8511: The structure path in the character details view should have a line break
- .. and this is probably a no-brainer?
- 09:52 PM bug #8338: Newly created structural modifier terms are not available in details view
- This is also a bit annoying, therefore I move it to 5.12 in case time is there to fix it.
- 06:19 PM bug #8736 (Resolved): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
- Applied in changeset commit:cdmlib|9e89976076d8a735426f40e4cebb49c42bd5ab33.
- 06:09 PM feature request #8688: Make OriginalSourceBase.cdmSource visible in TaxEditor
- Current implementation shows the titleCache if it is an IdentifiableEntity. It shows the UUID if it is a CdmBase. Oth...
- 06:08 PM feature request #8688 (Resolved): Make OriginalSourceBase.cdmSource visible in TaxEditor
- Applied in changeset commit:taxeditor|5d945a6ece2394f970845815a0dc7f08bb70e1b4.
- 05:43 PM task #8716 (Feedback): Configure taxeditor to run with GTK2 in linux
- On my home desktop PC with Linux Mint, Cinnamon desktop I have no problems but I also did not have any problems befor...
- 05:26 PM feature request #8044: Add "Move to..." menu to term editor
- This is not not experimental anymore.
Known issues when reviewing:
* It is still possible to select multiple te... - 05:25 PM bug #8763 (Duplicate): Remaining issues for "Move term" in term editor
- Known issues:
* ~~It is still possible to select multiple terms in the term search dialog but a warning will appea... - 05:07 PM feature request #8755: Show all structure/property trees in CharacterEditor
- Andreas Müller wrote:
> We tested intensively today during the integrated taxonomy course. It worked fine.
>
> 2 ... - 12:36 PM feature request #8755 (Feedback): Show all structure/property trees in CharacterEditor
- I am passing this ticket to you since the questions in comment 3 are addressed to the implementer.
- 03:36 PM feature request #8762 (New): [DISCUSS] Do we need/want to report a count for missing data in aggregated descriptions
- ... for reasons why this could be useful see #8759#note-4
- 03:33 PM feature request #8759: Description aggregation : suppress state present when more details are available
- This case usually is dirty or incomplete data. Dirty data should be shown on the portal to make it findable (correcta...
- 03:00 PM feature request #8759 (Feedback): Description aggregation : suppress state present when more details are available
- I adapted the description to avoid misunderstandings
In your comment you seem to suggest to show the following si... - 02:43 PM feature request #8759: Description aggregation : suppress state present when more details are available
- No this is a misunderstanding. The requirement is:
Do not show character and value for characters of property pres... - 01:19 PM feature request #8759: Description aggregation : suppress state present when more details are available
- This should be handled already during the aggregation process.
- 01:18 PM feature request #8759 (Resolved): Description aggregation : suppress state present when more details are available
- In character trees frequently a parent character is being used to determine the presence or absence of subordinate ch...
- 03:17 PM bug #8718 (Resolved): polytomousKey page: better handling of invalid uuids
- Andreas Müller wrote:
> Instead of saying "page not found" can't we do the same as for taxa and say "xxx does not ex... - 02:49 PM bug #8718 (Feedback): polytomousKey page: better handling of invalid uuids
- Instead of saying "page not found" can't we do the same as for taxa and say "xxx does not exist". This sounds a bit m...
- 02:41 PM bug #8718: polytomousKey page: better handling of invalid uuids
- done
please review I you have time to:
http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/n... - 01:58 PM bug #8718 (Resolved): polytomousKey page: better handling of invalid uuids
- Applied in changeset commit:cdm-dataportal|4d9660ef5a78a9d741385db13549716889ceabb1.
- 02:24 PM feature request #8756 (Resolved): Refresh button for structure tree and property tree in Character Editor
- Applied in changeset commit:taxeditor|a0f4664b4135fac8549cf6a0b0836acb248abbb8.
- 01:46 PM feature request #8756 (In Progress): Refresh button for structure tree and property tree in Character Editor
- 02:13 PM feature request #8761 (Closed): Remove TaxonName_NomenclaturalStatus MN table
- As a status belongs always to exactly 1 name an MN table is not necessary
- 01:41 PM bug #8760 (New): Presentation and linking of molecular data in specimen table too unclear
- Hallo,
mir ist auf http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/taxon/48249487-e921... - 01:10 PM feature request #8758 (Closed): Aggregated Descriptions: order states by frequency
- Most frequent states should be displayed first.
Another option to order the stated would be the term order as defi... - 10:36 AM bug #8757 (Resolved): ArrayIndexOutOfBoundsException in term combo
- 10:34 AM bug #8757 (Closed): ArrayIndexOutOfBoundsException in term combo
- … im Details View, beim Versuch Leaf length über Facts View einzugeben. Leaf length hat recommendedMeasurementUnit „...
12/10/2019
- 11:56 PM feature request #8028: Better representation of web app media in the image gallery
- AM:
Grundsätzlich sollten wir zwischen wirklichen Media und ExternalLinks unterscheiden. Das sind 2 Dinge, Media k... - 05:25 PM feature request #8028 (New): Better representation of web app media in the image gallery
- 05:24 PM feature request #8028: Better representation of web app media in the image gallery
- Alternative suggestion from Walter [06.12.19]:
Am wichtigsten wäre es mir, den grauen Kasten loszuwerden (das find... - 06:57 PM feature request #8755: Show all structure/property trees in CharacterEditor
- We tested intensively today during the integrated taxonomy course. It worked fine.
2 questions:
1) with the cu... - 06:57 PM feature request #8756: Refresh button for structure tree and property tree in Character Editor
- I assigned this to KL for now. PP if you think it is a no-brainer and you can immediately do it please feel free to t...
- 06:55 PM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Character Editor
- copied from #8755, explanations see there
- 05:36 PM task #8741 (Closed): Create test for MapServices to test if they support https
- done, see https://dev.e-taxonomy.eu/gitweb/edit-map-service-test.git/commit/9603e65de34cde146ba1020f0ed5e1290bf558c7
- 11:00 AM bug #8747: Matrix Editor: Can not unset categorical data
- Sorry, but I consider the priority of this ticket here as being much higher than the priority of #8755. #8755 does no...
- 09:59 AM bug #8747 (New): Matrix Editor: Can not unset categorical data
- This should be done sooner or later but it has not highest priority so not a task for PP anymore. Change user and ver...
- 09:15 AM bug #8747 (In Progress): Matrix Editor: Can not unset categorical data
- Please change it so that checkbox state is toggled each time when being clicked.
12/09/2019
- 06:16 PM feature request #8755 (Resolved): Show all structure/property trees in CharacterEditor
- Applied in changeset commit:taxeditor|6803fca4a0c8065b5c4227de7ee853b7969e5332.
- 03:55 PM feature request #8755 (Closed): Show all structure/property trees in CharacterEditor
- Currently you can only choose one tree for each term type
- 04:08 PM bug #8663 (Feedback): LIE when trying to save a tree node
- I cannot reproduce this. I also tested saving some changes for this character tree on rem_conf_am.
If you cannot r... - 01:38 PM bug #8663 (New): LIE when trying to save a tree node
- No this is not a duplicate. It looks like it happened in the term tree editor, not in the Character editor.
- 12:57 PM bug #8663 (In Progress): LIE when trying to save a tree node
- Is this a duplicate for 8744?
- 04:03 PM bug #8747 (Feedback): Matrix Editor: Can not unset categorical data
- Andreas Kohlbecker wrote:
> I don't consider this as user friendly. Is this default behavior of the nattable?
>
>... - 03:27 PM bug #8748 (Resolved): Supported state vocabularies should be ordered
- This should be fixed now, please review.
- 12:51 PM bug #8748: Supported state vocabularies should be ordered
- This is handled by KL as far as I know.
- 01:59 PM bug #8746: Multiple representations problem on saving Matrix Editor
- Is this reproducable? Otherwise I would close this ticket because MRE occurr everywhere from time to time.
- 01:30 PM feature request #8656 (Resolved): [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix?
- 01:19 PM bug #7990: Moving a feature via d&d does not make the Feature Tree Editor dirty
- In general the feature tree editor should persist data only after pushing save and therefore needs to be refactored. ...
- 01:03 PM bug #7994: Implement allowDuplicates for term trees in TaxEditor
- There is a flag now for term trees which defines if duplicates are allowed: "allowDuplicates"
But the according fu... - 12:42 PM feature request #7701 (Resolved): Add link to typified name on specimen page of data portal
- So I put this to resolved in current milestone so it can be reviewed. Please change back if not yet solved.
- 12:40 PM feature request #7701: Add link to typified name on specimen page of data portal
- maybe this is already solved
12/07/2019
- 06:11 PM bug #8312 (In Progress): Test, fix, improve and run Transmission engine for E+M
- 06:07 PM feature request #6352 (Duplicate): Add Transmission Engine trigger to Admin menu
12/06/2019
- 10:04 PM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- Based on the dump and situation in #8752:
* deleted both descriptive datasets
* delete the Character trees (for p... - 09:53 PM bug #8753 (Closed): EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- Based on the dump and situation in #8752:
* deleted both descriptive datasets
* Immediately open the Character T... - 09:44 PM bug #8752 (Worksforme): Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset
- It seems as if the DescriptiveDataset has been corrupted somehow.
1. I removed all "specimens" from the matrix at ... - 06:19 PM bug #8747 (New): Matrix Editor: Can not unset categorical data
- I don't consider this as user friendly. Is this default behavior of the nattable?
Since there are check boxes in t... - 12:21 PM bug #8747 (Resolved): Matrix Editor: Can not unset categorical data
- You have to hold CTRL and select the chosen state again to de-select.
- 06:16 PM bug #8746: Multiple representations problem on saving Matrix Editor
- Patrick Plitzner wrote:
> Did you just enter categorical and quantitative data?
> Did you only enter data for this... - 12:23 PM bug #8746 (Feedback): Multiple representations problem on saving Matrix Editor
- Did you just enter categorical and quantitative data?
Did you only enter data for this one specimen?
Did you edit a... - 03:44 PM bug #8744 (Resolved): LazyInitializationException (LIE) saving the Character Editor
- This seems to be fixed now by using merge(). We still have to have a look at TermTreeEditor which currently still use...
- 02:05 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- hmm, it does not really seem to be the problem, but I found that there seems no session to be defined
![](picture1... - 01:25 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- After changing the users such that only 1 user was attached to all data like TermRelation, DefinedTermBase, TermVocab...
- 01:13 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- We need to test the behavior if data is edited with different users, it seems like at least one user (former user - u...
- 01:11 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- I do not understand how we can have a LIE within a save. With save all objects should be within the session by Merge....
- 03:42 PM bug #8751 (Duplicate): Replace saveOrUpdate() in AbstractTermTreeEditor
- Unexpectedly saveOrUpdate() is used instead of merge().
Currently, if you change to merge() an exception is thrown... - 01:41 PM feature request #8750 (New): Write tests for service layer methods getting the specimens for an assiociated taxon
- The service method for getting all specimen for an associated taxon needs tests:
The method should return all spec... - 01:18 PM bug #8748 (In Progress): Supported state vocabularies should be ordered
- Now there is a filter for the combo boxes.
- 11:17 AM bug #8748 (Closed): Supported state vocabularies should be ordered
- For characters there is a long list of state vocabularies now. Therefore they are difficult to find in the dropdown. ...
- 01:17 PM feature request #8749 (Duplicate): Add proposalProvider to AbstractComboElement
- 01:15 PM feature request #8749 (Closed): Add proposalProvider to AbstractComboElement
- To provide the filter to all combo elements add the proposalProvider to the AbstractComboElement.
This is used for... - 11:59 AM feature request #7071: Reenable restore functionality
- Idea:
* After CdmStore has connected invoke "open Part" command on saved editors.
* EditorInput/UUID can be sav...
12/05/2019
- 05:20 PM bug #8747 (New): Matrix Editor: Can not unset categorical data
- Once categorical data state has been set in a cell this cell can not be made blank
- 05:01 PM bug #8744 (In Progress): LazyInitializationException (LIE) saving the Character Editor
- 04:59 PM bug #8744 (Resolved): LazyInitializationException (LIE) saving the Character Editor
- Applied in changeset commit:taxeditor|5fa6172961481d22d6282abc10b4c350fe1c8bce.
- 04:38 PM bug #8746 (Rejected): Multiple representations problem on saving Matrix Editor
we did several edits in the matrix for multiple specimens.
Last edit was setting the the state for leave architect...- 04:33 PM bug #8745 (Resolved): Type designations of synonyms missing on specimen page
- please review
- 04:31 PM bug #8745 (Closed): Type designations of synonyms missing on specimen page
- Type designations of synonyms are missing in the compressed specimen page.
mail NK:
Es geht darum, dass von den... - 02:20 PM feature request #8677 (In Progress): Add distribution aggregation to set subtree menu
- Open issues:
* ~~highest rank should include the rank of the selected taxon~~
* ~~lowest rank should inlcude th...
12/04/2019
- 10:40 PM bug #6629 (Closed): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
- NK: Ist jetzt OK.
- 02:34 PM bug #6629 (Resolved): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
- For Acanthoscephalus, Heteroderis, Crepis and Lagoseriopsis the aggregation seems to work now. For Cichorium intybus ...
- 06:57 PM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor
- saving the Character Editor after changing the Character Node details causes an LazyInitializationException every tim...
- 05:29 PM bug #8743 (New): BioCASE specimen import: ignore invalid biocase accesspoint urls
- This is especially important for the DNA import. If an URL is specified which is not pointing to a BioCase provider t...
- 02:50 PM feature request #8742 (New): Allow deleting vocabularies
- Currently it is not possible to delete a vocabulary if it contains terms.
With OWL import (additivity) it is now pos... - 10:12 AM task #8741 (Closed): Create test for MapServices to test if they support https
- This especially tests if the existing certificate is still valid.
12/03/2019
- 06:37 PM feature request #8721: Use webservice to get all biocase provider listed by gbif
- I agree with the above. Maybe the title is enough. Users usually recognize a collection by its title not it's service...
- 06:24 PM feature request #8721: Use webservice to get all biocase provider listed by gbif
- The access points should be searchable also by the accesspoint title, For the BGBM Herbarium the webservice lists th...
- 06:32 PM feature request #8740 (New): BioCASE specimen import: implement data set filter in specimen import dialog page 2
- once an access point has been selected in the fist step it should be possible to limit the search to a specific data ...
- 04:35 PM feature request #8657: Order description element in portal according to CharacterTree
- Can you provide an example url?
- 12:14 PM feature request #8657: Order description element in portal according to CharacterTree
- Assignin to you Andreas M.
But maybe also Andreas K. needs to look at the code - 03:15 PM feature request #8713 (Resolved): Improve structured descriptive data aggregation
- At least tests exist now and also base class algorithm is used. Can you please review and put open issues into a foll...
- 02:15 PM bug #8670: Unwanted distribution aggregation/display on 2 levels
- Auch hier bitte einen letzten Check ob noch was offen ist.
Anschließend können wir das Ticket schließen. - 02:14 PM bug #4134: Transmissionengine Distribution seems to miss distributions for higher Taxa
- I think this is fully fixed with the new implementation of the transmission engine (which allows the user to decide t...
- 02:08 PM feature request #5176 (Closed): TransmissionEngineDistribution can run on selected taxa
- This should be fully fixed. As it has been used already and also a TaxEditor UI for using it has been developped I cl...
- 01:49 PM feature request #8472 (Closed): Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- 01:41 PM task #8468 (Closed): Remove old InapplicableIf tables
- 01:40 PM bug #8738 (Closed): CdmLink.startPos and .endPos should allow Null
- 01:40 PM bug #8702 (Closed): Remove Not null constraint for uuid in AUD tables
- 12:21 PM feature request #8714: description page: Show multiple datasets per description as list of links
- To review you would have to manually add a description to multiple datasets in the database. There is no test data li...
- 12:19 PM feature request #8595: Create description detail page
- created new ticket for remaining issues and discussion -> #8739
- 12:17 PM bug #8739 (Closed): remaining issues for description detail page
- Copied from #8595
* Evtl. will man auf aggr. Description von höheren Taxa nicht die Specimen als Quellen anzeigen,...
12/02/2019
- 12:31 PM feature request #8433 (Duplicate): Disallow user names with whitespace
- This is a duplicate for #8454 and has been fixed in CDM UML 5.8
- 12:26 PM task #8468 (Resolved): Remove old InapplicableIf tables
- Applied in changeset commit:cdmlib|73391892ccf6af23d1f83357e460ea9b55df4e2d.
- 12:12 PM bug #8702 (Resolved): Remove Not null constraint for uuid in AUD tables
- 12:12 PM bug #8738 (Resolved): CdmLink.startPos and .endPos should allow Null
- 10:55 AM bug #8738 (Closed): CdmLink.startPos and .endPos should allow Null
- The table was IntextReference before. After using it for class CdmLinkSource also the originally NOT NULL columns mus...
- 11:32 AM bug #8737 (Resolved): delete taxon included in two classifications deletes taxonname
- Now there is also the possibility to set the taxonnode configurator to deletetaxon = false. This was missing in the d...
- 09:42 AM bug #8737: delete taxon included in two classifications deletes taxonname
- please review.
- 09:35 AM bug #8737 (Closed): delete taxon included in two classifications deletes taxonname
- when deleting a taxon used in two classifications, the taxon still exist, but the name is deleted. This is because of...
- 10:35 AM bug #8733: Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- This ticket is complex. In the ticket description is not written HOW the taxon is added. In general the underlying se...
- 08:24 AM bug #8733 (Feedback): Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- Currently the specimens listed in the specimen selection dialog are cached after the first time opening the dialog be...
- 08:40 AM feature request #8665 (Resolved): Rename "New" to "New Tree" in Term Tree editors
- Applied in changeset commit:taxeditor|210af90ccae0c45e1234bdb8fe216285293546c6.
- 08:37 AM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descriptive Dataset Editor
- This is already solved for release 5.12 with #8661
Please validate with the current nightly build.
11/29/2019
- 05:17 PM bug #8736 (Closed): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
- To reproduce:
* use database: caryophyllales_spp (cactaceae)
* create new Descriptive Dataset (non specimens so f... - 04:09 PM task #7976 (In Progress): [PESI][ERMS] Erms taxon import
- 04:09 PM task #8509 (In Progress): [PESI][ERMS] Export ERMS data to PESI
- 04:06 PM task #8577 (In Progress): [PESI][E+M] Validation for E+M export
- 03:35 PM bug #8735 (Duplicate): Character Node Editor: allow line breaks at slashes in structure representation
The line wrapping does not work for long structure representation. Breaks only happen where the term labels contain...- 11:28 AM task #8734 (Closed): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
- 10:34 AM task #8734 (In Progress): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
- SQL to use
~~~
UPDATE DescriptionElementBase deb
INNER JOIN DefinedTermBase a ON deb.area_id = a.id
INNER JOIN ... - 10:33 AM task #8734 (Closed): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
- This will shorten the textuell representations of distribution data in the data portal
- 01:49 AM bug #8731 (Resolved): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- now it works again with the nightly build.
- 12:47 AM bug #8731 (In Progress): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- This is strange, I can not reproduce this with an editor started from the workspace, also when using the actual git d...
11/28/2019
- 06:57 PM bug #8733 (Closed): Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- to reproduce
1. create Descriptive data set in caryophyllales_spp
* adding *Rhipsalis pilocarpa* by drag and dro... - 06:33 PM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descriptive Dataset Editor
- just exactly what is written in the subject.
- 03:45 PM bug #8731: BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- An import of specimens is not possible wit the current code base in the development branch.
- 03:40 PM bug #8731 (Closed): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- I am not sure about the timing of the situation in which this exception occurred.
I was searching the `http://ww3.... - 03:23 PM bug #8730 (New): OWL Term export progress monitor reports wrong process percentage
- The initial percentage is really funny:
![](picture396-1.png) - 12:29 PM bug #8720: blank perspective after using "Switch User"
- the perspective looked like this:
![](picture283-1.png)
today is the first day this is not happening for quite ... - 12:05 PM bug #8720: blank perspective after using "Switch User"
- I am not sure if I fully understand the problem. When I try to change the user I get the "Taxonomic" perspective but ...
- 11:51 AM bug #8729: Refresh Taxon Navigator after Specimen import
- Seems to be very similar to #8659. So we may think about putting it also to 5.12. Katja, what do you think?
- 10:54 AM bug #8729 (New): Refresh Taxon Navigator after Specimen import
- After a successful specimen import vi BioCASE Provider the Taxon Navigator is not being refreshed.
New created Clas... - 09:34 AM bug #8728: Specimen import via BioCASE silently fails
- Andreas Kohlbecker wrote:
> The problem in one specific case was that the user was not permitted to update a person:... - 09:26 AM bug #8728: Specimen import via BioCASE silently fails
- Next Problem:
~~~
[CREATE] not permitted for 'kurs1' on TaxonNode[uuid:79c3deac-ee1d-4622-91fa-746be0894161', toS... - 08:51 AM bug #8728: Specimen import via BioCASE silently fails
- The problem in one specific case was that the user was not permitted to update a person:
~~~
[UPDATE] not permitt...
11/27/2019
- 04:42 PM bug #8728: Specimen import via BioCASE silently fails
- As the import works without problems with the `admin` user, it seems as if this is a permission problem.
@Katja: 1... - 04:24 PM bug #8728: Specimen import via BioCASE silently fails
- this is reproducible
once this error has occurred the taxeditor has to be restarted, otherwise further import atte... - 04:15 PM bug #8728 (New): Specimen import via BioCASE silently fails
- ABCD Specimen import via BioCASE provider silently fails
Logged in as user with GAs: `Editor` + `TAXONNODE.[CREATE... - 03:39 PM EDIT Platform Etablierung task #8727 (In Progress): Test Workshop workflow
- 03:21 PM EDIT Platform Etablierung task #8727 (Closed): Test Workshop workflow
- **Use the simple editor user accounts: kurs1..5**
The section of taxa to test the workflow with is based in the ... - 02:39 PM feature request #8686: Support CdmLink sources in bibliography
- Further more there is a discussion if links to taxa should be direct links from the description(element) to the taxon...
- 02:38 PM feature request #8686: Support CdmLink sources in bibliography
- Support for link to taxa has been added in #8724. So we need to check or implement that also links to taxa are handle...
- 02:36 PM feature request #8724 (Resolved): Allow OriginalSource to link to Taxon
- 02:25 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
- When aggregating (or moving) data one may want to link to the taxon the data originally comes from so we need a possi...
- 02:35 PM feature request #8726 (New): the search preference search field should be a list
- The preference defining the search field should be not a single value, but a list of fields on which the seach should...
- 02:34 PM feature request #8725 (Feedback): Add abbreviation to namedArea text field in distribution details view
- Some named areas have the same label therefore it would be nice to show an abbreviation like idInVoc. This should be ...
- 09:41 AM feature request #8721 (In Progress): Use webservice to get all biocase provider listed by gbif
- The prefilled combo and the filtering for entered text is implemented in the specimen dialog now.
- 09:11 AM bug #8723 (Worksforme): Distribution detailsview: changing the area removes the state
- When changing the area of a distribution the status is not displayed anymore. But the distribution still has the stat...
11/26/2019
- 04:09 PM EDIT Platform Etablierung task #8722 (Closed): Provide Manuals and Dokumentation for the Kurs „Integrated Taxonomy“ WiSe 2019/20
- Documentation needed for the Kurs:
* Matrix-Editor manual - is being prepared ...
* List of user accounts for dem... - 03:59 PM EDIT Platform Etablierung task #8712 (Closed): Kurs "Integrated Taxonomy" : prepare setup for workshop computers
- 02:53 PM feature request #8721 (Closed): Use webservice to get all biocase provider listed by gbif
- For the specimen search it would be nice to have a list of all biocase provider. (Jörg provided us a webservice)
W... - 10:43 AM bug #8720 (New): blank perspective after using "Switch User"
- When switching the user *General > Switch User* all views and editors are closed, making the perspective blank. After...
- 09:19 AM bug #8719 (Resolved): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
- Applied in changeset commit:cdm-dataportal|56d39875a598bad7e9c7591d5436b0ac63160cae.
- 08:23 AM bug #8719 (Closed): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
- this bug has been discovered in the process of automatic creation of workshop servers (`server-scripts/workshop-setup...
11/25/2019
- 02:51 PM feature request #8460: Show examples in text field
- Try to implement a base functionality.
This is already implemented in taxon search.
11/22/2019
- 01:27 PM bug #8718: polytomousKey page: better handling of invalid uuids
- Patrick, this is relevant for additivity (currently PKs get a new uuid with every generation) so we may think about m...
- 12:53 PM bug #8718 (Closed): polytomousKey page: better handling of invalid uuids
- ich habe gerade gesehen, dass ein PolyKey, wenn dessen uuid nicht stimmt unschöne Fehler schmeißt:
http://test.e-t...
11/21/2019
- 04:16 PM task #8716 (Resolved): Configure taxeditor to run with GTK2 in linux
- please report if you are having any problems due to the switch to GTK2
- 04:09 PM task #8716: Configure taxeditor to run with GTK2 in linux
- Andreas Kohlbecker wrote:
> as documented in https://wiki.eclipse.org/SWT/Devel/Gtk/GtkVersion the gtk version can b... - 04:03 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
- as documented in https://wiki.eclipse.org/SWT/Devel/Gtk/GtkVersion the gtk version can be set via
~~~
--launcher... - 01:12 PM task #8716 (Closed): Configure taxeditor to run with GTK2 in linux
- Der Taxeditor verwendet SWT in der Version 3.105.3.v20170228-0512 (Id: org.eclipse.swt, Version: 3.105.3.v20170228-05...
- 03:58 PM bug #8717 (New): Improve display of PolytomousKey nodes which have a feature
- If a PKN has a feature and not a statement it is repeated multiple times for the child alternatives. A better layout ...
- 03:29 PM bug #8313 (Feedback): Multiple categorical data get deleted when clicked on in Character Matrix
- Reopen as it happens again.
How to reproduce: in any categorical cell select 2 states. Leafe the cell (it shows bo... - 03:21 PM feature request #8714 (Resolved): description page: Show multiple datasets per description as list of links
- Applied in changeset commit:cdm-dataportal|cf89f7e20f7cbd623d7d373bbf9061003f175179.
- 11:42 AM feature request #8714 (Resolved): description page: Show multiple datasets per description as list of links
- A description can have multiple descriptive data sets. These define which features are displayed and in which order.
... - 02:38 PM feature request #8595 (Resolved): Create description detail page
- 12:35 PM task #8468 (In Progress): Remove old InapplicableIf tables
- 12:21 PM feature request #8715: Make 'delete Taxonnode' a lonrunning task
- Deleting nodes can take some time and results in connection warnings or timeouts. This can be solved by running the d...
- 12:16 PM feature request #8715 (New): Make 'delete Taxonnode' a lonrunning task
- 08:19 AM feature request #8713 (Closed): Improve structured descriptive data aggregation
- * Tests
* Remove empty categorical data creation
* use base class algorithm from #8679
* TBC
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