Activity
From 11/07/2019 to 12/06/2019
12/06/2019
- 10:04 PM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- Based on the dump and situation in #8752:
* deleted both descriptive datasets
* delete the Character trees (for p... - 09:53 PM bug #8753 (Closed): EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- Based on the dump and situation in #8752:
* deleted both descriptive datasets
* Immediately open the Character T... - 09:44 PM bug #8752 (Worksforme): Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset
- It seems as if the DescriptiveDataset has been corrupted somehow.
1. I removed all "specimens" from the matrix at ... - 06:19 PM bug #8747 (New): Matrix Editor: Can not unset categorical data
- I don't consider this as user friendly. Is this default behavior of the nattable?
Since there are check boxes in t... - 12:21 PM bug #8747 (Resolved): Matrix Editor: Can not unset categorical data
- You have to hold CTRL and select the chosen state again to de-select.
- 06:16 PM bug #8746: Multiple representations problem on saving Matrix Editor
- Patrick Plitzner wrote:
> Did you just enter categorical and quantitative data?
> Did you only enter data for this... - 12:23 PM bug #8746 (Feedback): Multiple representations problem on saving Matrix Editor
- Did you just enter categorical and quantitative data?
Did you only enter data for this one specimen?
Did you edit a... - 03:44 PM bug #8744 (Resolved): LazyInitializationException (LIE) saving the Character Editor
- This seems to be fixed now by using merge(). We still have to have a look at TermTreeEditor which currently still use...
- 02:05 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- hmm, it does not really seem to be the problem, but I found that there seems no session to be defined
![](picture1... - 01:25 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- After changing the users such that only 1 user was attached to all data like TermRelation, DefinedTermBase, TermVocab...
- 01:13 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- We need to test the behavior if data is edited with different users, it seems like at least one user (former user - u...
- 01:11 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- I do not understand how we can have a LIE within a save. With save all objects should be within the session by Merge....
- 03:42 PM bug #8751 (Duplicate): Replace saveOrUpdate() in AbstractTermTreeEditor
- Unexpectedly saveOrUpdate() is used instead of merge().
Currently, if you change to merge() an exception is thrown... - 01:41 PM feature request #8750 (New): Write tests for service layer methods getting the specimens for an assiociated taxon
- The service method for getting all specimen for an associated taxon needs tests:
The method should return all spec... - 01:18 PM bug #8748 (In Progress): Supported state vocabularies should be ordered
- Now there is a filter for the combo boxes.
- 11:17 AM bug #8748 (Closed): Supported state vocabularies should be ordered
- For characters there is a long list of state vocabularies now. Therefore they are difficult to find in the dropdown. ...
- 01:17 PM feature request #8749 (Duplicate): Add proposalProvider to AbstractComboElement
- 01:15 PM feature request #8749 (Closed): Add proposalProvider to AbstractComboElement
- To provide the filter to all combo elements add the proposalProvider to the AbstractComboElement.
This is used for... - 11:59 AM feature request #7071: Reenable restore functionality
- Idea:
* After CdmStore has connected invoke "open Part" command on saved editors.
* EditorInput/UUID can be sav...
12/05/2019
- 05:20 PM bug #8747 (New): Matrix Editor: Can not unset categorical data
- Once categorical data state has been set in a cell this cell can not be made blank
- 05:01 PM bug #8744 (In Progress): LazyInitializationException (LIE) saving the Character Editor
- 04:59 PM bug #8744 (Resolved): LazyInitializationException (LIE) saving the Character Editor
- Applied in changeset commit:taxeditor|5fa6172961481d22d6282abc10b4c350fe1c8bce.
- 04:38 PM bug #8746 (Rejected): Multiple representations problem on saving Matrix Editor
we did several edits in the matrix for multiple specimens.
Last edit was setting the the state for leave architect...- 04:33 PM bug #8745 (Resolved): Type designations of synonyms missing on specimen page
- please review
- 04:31 PM bug #8745 (Closed): Type designations of synonyms missing on specimen page
- Type designations of synonyms are missing in the compressed specimen page.
mail NK:
Es geht darum, dass von den... - 02:20 PM feature request #8677 (In Progress): Add distribution aggregation to set subtree menu
- Open issues:
* ~~highest rank should include the rank of the selected taxon~~
* ~~lowest rank should inlcude th...
12/04/2019
- 10:40 PM bug #6629 (Closed): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
- NK: Ist jetzt OK.
- 02:34 PM bug #6629 (Resolved): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
- For Acanthoscephalus, Heteroderis, Crepis and Lagoseriopsis the aggregation seems to work now. For Cichorium intybus ...
- 06:57 PM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor
- saving the Character Editor after changing the Character Node details causes an LazyInitializationException every tim...
- 05:29 PM bug #8743 (New): BioCASE specimen import: ignore invalid biocase accesspoint urls
- This is especially important for the DNA import. If an URL is specified which is not pointing to a BioCase provider t...
- 02:50 PM feature request #8742 (New): Allow deleting vocabularies
- Currently it is not possible to delete a vocabulary if it contains terms.
With OWL import (additivity) it is now pos... - 10:12 AM task #8741 (Closed): Create test for MapServices to test if they support https
- This especially tests if the existing certificate is still valid.
12/03/2019
- 06:37 PM feature request #8721: Use webservice to get all biocase provider listed by gbif
- I agree with the above. Maybe the title is enough. Users usually recognize a collection by its title not it's service...
- 06:24 PM feature request #8721: Use webservice to get all biocase provider listed by gbif
- The access points should be searchable also by the accesspoint title, For the BGBM Herbarium the webservice lists th...
- 06:32 PM feature request #8740 (New): BioCASE specimen import: implement data set filter in specimen import dialog page 2
- once an access point has been selected in the fist step it should be possible to limit the search to a specific data ...
- 04:35 PM feature request #8657: Order description element in portal according to CharacterTree
- Can you provide an example url?
- 12:14 PM feature request #8657: Order description element in portal according to CharacterTree
- Assignin to you Andreas M.
But maybe also Andreas K. needs to look at the code - 03:15 PM feature request #8713 (Resolved): Improve structured descriptive data aggregation
- At least tests exist now and also base class algorithm is used. Can you please review and put open issues into a foll...
- 02:15 PM bug #8670: Unwanted distribution aggregation/display on 2 levels
- Auch hier bitte einen letzten Check ob noch was offen ist.
Anschließend können wir das Ticket schließen. - 02:14 PM bug #4134: Transmissionengine Distribution seems to miss distributions for higher Taxa
- I think this is fully fixed with the new implementation of the transmission engine (which allows the user to decide t...
- 02:08 PM feature request #5176 (Closed): TransmissionEngineDistribution can run on selected taxa
- This should be fully fixed. As it has been used already and also a TaxEditor UI for using it has been developped I cl...
- 01:49 PM feature request #8472 (Closed): Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- 01:41 PM task #8468 (Closed): Remove old InapplicableIf tables
- 01:40 PM bug #8738 (Closed): CdmLink.startPos and .endPos should allow Null
- 01:40 PM bug #8702 (Closed): Remove Not null constraint for uuid in AUD tables
- 12:21 PM feature request #8714: description page: Show multiple datasets per description as list of links
- To review you would have to manually add a description to multiple datasets in the database. There is no test data li...
- 12:19 PM feature request #8595: Create description detail page
- created new ticket for remaining issues and discussion -> #8739
- 12:17 PM bug #8739 (Closed): remaining issues for description detail page
- Copied from #8595
* Evtl. will man auf aggr. Description von höheren Taxa nicht die Specimen als Quellen anzeigen,...
12/02/2019
- 12:31 PM feature request #8433 (Duplicate): Disallow user names with whitespace
- This is a duplicate for #8454 and has been fixed in CDM UML 5.8
- 12:26 PM task #8468 (Resolved): Remove old InapplicableIf tables
- Applied in changeset commit:cdmlib|73391892ccf6af23d1f83357e460ea9b55df4e2d.
- 12:12 PM bug #8702 (Resolved): Remove Not null constraint for uuid in AUD tables
- 12:12 PM bug #8738 (Resolved): CdmLink.startPos and .endPos should allow Null
- 10:55 AM bug #8738 (Closed): CdmLink.startPos and .endPos should allow Null
- The table was IntextReference before. After using it for class CdmLinkSource also the originally NOT NULL columns mus...
- 11:32 AM bug #8737 (Resolved): delete taxon included in two classifications deletes taxonname
- Now there is also the possibility to set the taxonnode configurator to deletetaxon = false. This was missing in the d...
- 09:42 AM bug #8737: delete taxon included in two classifications deletes taxonname
- please review.
- 09:35 AM bug #8737 (Closed): delete taxon included in two classifications deletes taxonname
- when deleting a taxon used in two classifications, the taxon still exist, but the name is deleted. This is because of...
- 10:35 AM bug #8733: Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- This ticket is complex. In the ticket description is not written HOW the taxon is added. In general the underlying se...
- 08:24 AM bug #8733 (Feedback): Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- Currently the specimens listed in the specimen selection dialog are cached after the first time opening the dialog be...
- 08:40 AM feature request #8665 (Resolved): Rename "New" to "New Tree" in Term Tree editors
- Applied in changeset commit:taxeditor|210af90ccae0c45e1234bdb8fe216285293546c6.
- 08:37 AM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descriptive Dataset Editor
- This is already solved for release 5.12 with #8661
Please validate with the current nightly build.
11/29/2019
- 05:17 PM bug #8736 (Closed): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
- To reproduce:
* use database: caryophyllales_spp (cactaceae)
* create new Descriptive Dataset (non specimens so f... - 04:09 PM task #7976 (In Progress): [PESI][ERMS] Erms taxon import
- 04:09 PM task #8509 (In Progress): [PESI][ERMS] Export ERMS data to PESI
- 04:06 PM task #8577 (In Progress): [PESI][E+M] Validation for E+M export
- 03:35 PM bug #8735 (Duplicate): Character Node Editor: allow line breaks at slashes in structure representation
The line wrapping does not work for long structure representation. Breaks only happen where the term labels contain...- 11:28 AM task #8734 (Closed): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
- 10:34 AM task #8734 (In Progress): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
- SQL to use
~~~
UPDATE DescriptionElementBase deb
INNER JOIN DefinedTermBase a ON deb.area_id = a.id
INNER JOIN ... - 10:33 AM task #8734 (Closed): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
- This will shorten the textuell representations of distribution data in the data portal
- 01:49 AM bug #8731 (Resolved): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- now it works again with the nightly build.
- 12:47 AM bug #8731 (In Progress): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- This is strange, I can not reproduce this with an editor started from the workspace, also when using the actual git d...
11/28/2019
- 06:57 PM bug #8733 (Closed): Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- to reproduce
1. create Descriptive data set in caryophyllales_spp
* adding *Rhipsalis pilocarpa* by drag and dro... - 06:33 PM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descriptive Dataset Editor
- just exactly what is written in the subject.
- 03:45 PM bug #8731: BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- An import of specimens is not possible wit the current code base in the development branch.
- 03:40 PM bug #8731 (Closed): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- I am not sure about the timing of the situation in which this exception occurred.
I was searching the `http://ww3.... - 03:23 PM bug #8730 (New): OWL Term export progress monitor reports wrong process percentage
- The initial percentage is really funny:
![](picture396-1.png) - 12:29 PM bug #8720: blank perspective after using "Switch User"
- the perspective looked like this:
![](picture283-1.png)
today is the first day this is not happening for quite ... - 12:05 PM bug #8720: blank perspective after using "Switch User"
- I am not sure if I fully understand the problem. When I try to change the user I get the "Taxonomic" perspective but ...
- 11:51 AM bug #8729: Refresh Taxon Navigator after Specimen import
- Seems to be very similar to #8659. So we may think about putting it also to 5.12. Katja, what do you think?
- 10:54 AM bug #8729 (New): Refresh Taxon Navigator after Specimen import
- After a successful specimen import vi BioCASE Provider the Taxon Navigator is not being refreshed.
New created Clas... - 09:34 AM bug #8728: Specimen import via BioCASE silently fails
- Andreas Kohlbecker wrote:
> The problem in one specific case was that the user was not permitted to update a person:... - 09:26 AM bug #8728: Specimen import via BioCASE silently fails
- Next Problem:
~~~
[CREATE] not permitted for 'kurs1' on TaxonNode[uuid:79c3deac-ee1d-4622-91fa-746be0894161', toS... - 08:51 AM bug #8728: Specimen import via BioCASE silently fails
- The problem in one specific case was that the user was not permitted to update a person:
~~~
[UPDATE] not permitt...
11/27/2019
- 04:42 PM bug #8728: Specimen import via BioCASE silently fails
- As the import works without problems with the `admin` user, it seems as if this is a permission problem.
@Katja: 1... - 04:24 PM bug #8728: Specimen import via BioCASE silently fails
- this is reproducible
once this error has occurred the taxeditor has to be restarted, otherwise further import atte... - 04:15 PM bug #8728 (New): Specimen import via BioCASE silently fails
- ABCD Specimen import via BioCASE provider silently fails
Logged in as user with GAs: `Editor` + `TAXONNODE.[CREATE... - 03:39 PM EDIT Platform Etablierung task #8727 (In Progress): Test Workshop workflow
- 03:21 PM EDIT Platform Etablierung task #8727 (Closed): Test Workshop workflow
- **Use the simple editor user accounts: kurs1..5**
The section of taxa to test the workflow with is based in the ... - 02:39 PM feature request #8686: Support CdmLink sources in bibliography
- Further more there is a discussion if links to taxa should be direct links from the description(element) to the taxon...
- 02:38 PM feature request #8686: Support CdmLink sources in bibliography
- Support for link to taxa has been added in #8724. So we need to check or implement that also links to taxa are handle...
- 02:36 PM feature request #8724 (Resolved): Allow OriginalSource to link to Taxon
- 02:25 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
- When aggregating (or moving) data one may want to link to the taxon the data originally comes from so we need a possi...
- 02:35 PM feature request #8726 (New): the search preference search field should be a list
- The preference defining the search field should be not a single value, but a list of fields on which the seach should...
- 02:34 PM feature request #8725 (Feedback): Add abbreviation to namedArea text field in distribution details view
- Some named areas have the same label therefore it would be nice to show an abbreviation like idInVoc. This should be ...
- 09:41 AM feature request #8721 (In Progress): Use webservice to get all biocase provider listed by gbif
- The prefilled combo and the filtering for entered text is implemented in the specimen dialog now.
- 09:11 AM bug #8723 (Worksforme): Distribution detailsview: changing the area removes the state
- When changing the area of a distribution the status is not displayed anymore. But the distribution still has the stat...
11/26/2019
- 04:09 PM EDIT Platform Etablierung task #8722 (Closed): Provide Manuals and Dokumentation for the Kurs „Integrated Taxonomy“ WiSe 2019/20
- Documentation needed for the Kurs:
* Matrix-Editor manual - is being prepared ...
* List of user accounts for dem... - 03:59 PM EDIT Platform Etablierung task #8712 (Closed): Kurs "Integrated Taxonomy" : prepare setup for workshop computers
- 02:53 PM feature request #8721 (Closed): Use webservice to get all biocase provider listed by gbif
- For the specimen search it would be nice to have a list of all biocase provider. (Jörg provided us a webservice)
W... - 10:43 AM bug #8720 (New): blank perspective after using "Switch User"
- When switching the user *General > Switch User* all views and editors are closed, making the perspective blank. After...
- 09:19 AM bug #8719 (Resolved): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
- Applied in changeset commit:cdm-dataportal|56d39875a598bad7e9c7591d5436b0ac63160cae.
- 08:23 AM bug #8719 (Closed): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
- this bug has been discovered in the process of automatic creation of workshop servers (`server-scripts/workshop-setup...
11/25/2019
- 02:51 PM feature request #8460: Show examples in text field
- Try to implement a base functionality.
This is already implemented in taxon search.
11/22/2019
- 01:27 PM bug #8718: polytomousKey page: better handling of invalid uuids
- Patrick, this is relevant for additivity (currently PKs get a new uuid with every generation) so we may think about m...
- 12:53 PM bug #8718 (Closed): polytomousKey page: better handling of invalid uuids
- ich habe gerade gesehen, dass ein PolyKey, wenn dessen uuid nicht stimmt unschöne Fehler schmeißt:
http://test.e-t...
11/21/2019
- 04:16 PM task #8716 (Resolved): Configure taxeditor to run with GTK2 in linux
- please report if you are having any problems due to the switch to GTK2
- 04:09 PM task #8716: Configure taxeditor to run with GTK2 in linux
- Andreas Kohlbecker wrote:
> as documented in https://wiki.eclipse.org/SWT/Devel/Gtk/GtkVersion the gtk version can b... - 04:03 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
- as documented in https://wiki.eclipse.org/SWT/Devel/Gtk/GtkVersion the gtk version can be set via
~~~
--launcher... - 01:12 PM task #8716 (Closed): Configure taxeditor to run with GTK2 in linux
- Der Taxeditor verwendet SWT in der Version 3.105.3.v20170228-0512 (Id: org.eclipse.swt, Version: 3.105.3.v20170228-05...
- 03:58 PM bug #8717 (New): Improve display of PolytomousKey nodes which have a feature
- If a PKN has a feature and not a statement it is repeated multiple times for the child alternatives. A better layout ...
- 03:29 PM bug #8313 (Feedback): Multiple categorical data get deleted when clicked on in Character Matrix
- Reopen as it happens again.
How to reproduce: in any categorical cell select 2 states. Leafe the cell (it shows bo... - 03:21 PM feature request #8714 (Resolved): description page: Show multiple datasets per description as list of links
- Applied in changeset commit:cdm-dataportal|cf89f7e20f7cbd623d7d373bbf9061003f175179.
- 11:42 AM feature request #8714 (Resolved): description page: Show multiple datasets per description as list of links
- A description can have multiple descriptive data sets. These define which features are displayed and in which order.
... - 02:38 PM feature request #8595 (Resolved): Create description detail page
- 12:35 PM task #8468 (In Progress): Remove old InapplicableIf tables
- 12:21 PM feature request #8715: Make 'delete Taxonnode' a lonrunning task
- Deleting nodes can take some time and results in connection warnings or timeouts. This can be solved by running the d...
- 12:16 PM feature request #8715 (New): Make 'delete Taxonnode' a lonrunning task
- 08:19 AM feature request #8713 (Closed): Improve structured descriptive data aggregation
- * Tests
* Remove empty categorical data creation
* use base class algorithm from #8679
* TBC
11/20/2019
- 05:11 PM EDIT Platform Etablierung task #8689: Export Flora of Greece Bupleurum using Cdm2Cdm export
- I change Project and milestone as it is mostly data related.
- 03:37 PM EDIT Platform Etablierung task #8689 (Closed): Export Flora of Greece Bupleurum using Cdm2Cdm export
- The data looks complete and did not cause any errors when opening the taxa in the editor.
I consider this issue as... - 05:01 PM feature request #8281 (Closed): Doubtful flag for TaxonNode
- E+M data updated
~~~
UPDATE TaxonNode
Set unplaced = 0, doubtful = 1
WHERE unplaced = 1
~~~
also for _AUD - 05:00 PM feature request #8686 (In Progress): Support CdmLink sources in bibliography
- 04:51 PM EDIT Platform Etablierung task #8711 (Closed): add additivity ontologies to the bupleurum database
- completed a dump is stored at edit-test:/root/cdm_test_bupleurum-2019-11-20-001.sql.bz2
- 01:25 PM EDIT Platform Etablierung task #8711 (Closed): add additivity ontologies to the bupleurum database
- the ontology can be downloaded from https://cybertaxonomy.eu/download/data/ontology/additivity/
the characters mus... - 04:24 PM feature request #8657 (Resolved): Order description element in portal according to CharacterTree
- 01:32 PM EDIT Platform Etablierung task #8712 (Closed): Kurs "Integrated Taxonomy" : prepare setup for workshop computers
* We will be using the edit-demo-2 server for the Kurs "Integrated Taxonomy"
* prepare database: - **DONE**
...- 12:58 PM task #8710: Decide if sub-area Preference and/or status order preference rule
- relevant code:
~~~
define('CDM_DISTRIBUTION_FILTER_DEFAULT', serialize(
array(
'filter_rules' => array(
'statu... - 12:57 PM task #8710: Decide if sub-area Preference and/or status order preference rule
- Probably needs discussion with users.
- 12:56 PM task #8710 (New): Decide if sub-area Preference and/or status order preference rule
- Currently they are switched of in default dataportals.
The setting can be found in the portal settings on the genera... - 12:10 PM feature request #8709 (New): Show last selected name in selection dialog of name in source
- mail Eckhard v. Raab-Straube:
was auch nett wäre: wenn sich der Editor bei der Auswahl des „name in source“ an die... - 12:05 PM feature request #8708 (Duplicate): Sort taxa in distribution editor same as in navigator
- mail Eckhard v. Raab-Straube:
Hallo,
zum Verbreitungseditor:
wenn man den Verbreitungseditor von einem höher... - 12:03 PM feature request #8707 (New): Use NAT Table for specimen search result
- The search result for the specimen search contains not all informations needed. Therefore it should be shown in a NAT...
- 11:45 AM feature request #8706 (Closed): taxeditor error report with timestamps
- Wie wäre es wenn wir dem Fehlerprotokoll mal einen Timestamp spendierten? Damit wäre es leichter den Fehler einem bes...
- 01:35 AM bug #8670 (Resolved): Unwanted distribution aggregation/display on 2 levels
- Dieses Ticket hat primär mit der Kartenanzeige und nicht mit der Aggregation zu tun. Bei der Kartenanzeige gibt es di...
11/19/2019
- 11:12 PM task #8671: Distribution in E+M (BM) on different levels
- AM
Die Regel klingt erstmal sinnig und einfach. Ich habe allerdings gerade mal eine DB Abfrage gestartet, wie viel... - 11:05 PM task #8671: Distribution in E+M (BM) on different levels
- ERS:
die Anzeige ist so korrekt. Wenn ein Unterareal vorhanden ist, soll das höhere Areal nicht angezeigt werden, ... - 05:16 PM task #8671 (In Progress): Distribution in E+M (BM) on different levels
- 05:38 PM bug #6629 (In Progress): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
- 05:31 PM feature request #8661 (Closed): "New DataSet" should ask for label and then open the dataset
- Works fine
- 05:28 PM feature request #8703 (Closed): Move TermSearch and Specimen(Import)Search to editor area of taxeditor
- Works fine. Thanks.
- 02:46 PM feature request #8703 (Resolved): Move TermSearch and Specimen(Import)Search to editor area of taxeditor
- Applied in changeset commit:taxeditor|0b7e08834f03d3e7ce2ea6c1f55c908a14d76758.
- 02:28 PM feature request #8703 (Closed): Move TermSearch and Specimen(Import)Search to editor area of taxeditor
- 05:27 PM bug #8705 (New): While specimen are loaded from provider the specimen list in specimen search should show "loading"
- to indicate that the search is not yet ready.
- 05:25 PM feature request #8665 (Feedback): Rename "New" to "New Tree" in Term Tree editors
- The problem in the ticket description is solved. Ticket can be closed.
Something I found when testing:
Can we u... - 05:18 PM bug #8670 (In Progress): Unwanted distribution aggregation/display on 2 levels
- 05:15 PM task #8672 (In Progress): Source handling during (distribution) aggregation
- 04:59 PM bug #7665: ConcurrentModificationException when closing Editor
- I think it happens still from time to time.
- 04:57 PM feature request #3836 (Closed): Implement modifiers and modifying text for Description Elements in TaxEditor
- I think I tested this in the context of #8226 and I think it worked.
- 04:54 PM EDIT Platform Etablierung task #8704 (In Progress): Test specimen import via BioCase and write documentation
- 04:52 PM EDIT Platform Etablierung task #8704 (Closed): Test specimen import via BioCase and write documentation
**TODO:**
* test specimen import via BioCase in taxeditor - **DONE and succesful**
* documentation **DONE**- 04:46 PM bug #8517 (Resolved): SpecimenOrObservation: data from protected titleCache missig in portal pages
- Sorry, I was not exact in my comment. I meant to move it from DerivedUnitFacadeCacheStrategy to DerivedUnitFacadeFiel...
- 04:18 PM EDIT Platform Etablierung report #8556 (Closed): sifting of existing documentation
- 04:16 PM EDIT Platform Etablierung task #8578 (Closed): Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)
- This task in complete since we have now a good naming strategy which should be acceptable for almost anybody:
".... - 04:08 PM bug #8243: Cdm Cache uses a lot of disk space
- The description states that the increase of diskspace usage happened in seconds "*free disk space to 100% full in sec...
- 03:59 PM bug #8702: Remove Not null constraint for uuid in AUD tables
- query in information_schema to find such columns
~~~
SELECT *
FROM COLUMNS c
WHERE c.COLUMN_NAME = 'uuid' AND ... - 03:21 PM bug #8702: Remove Not null constraint for uuid in AUD tables
- I updated most production DBs manually already.
- 01:47 PM bug #8702 (Closed): Remove Not null constraint for uuid in AUD tables
- Some databases do have uuid NOT NULL contraints in some _AUD tables. In caryo_spp I found the following tables with t...
- 03:24 PM feature request #8694 (Closed): Specimen online import - Specimen Search: import button layout problem on linux KDE
- perfectly solved!
- 02:42 PM feature request #8694 (Resolved): Specimen online import - Specimen Search: import button layout problem on linux KDE
- 01:54 PM bug #7683: external links Audit table should allow uuid to be null
- We need an update script for all cases where AUD tables still have uuid NOT NULL: #8702
- 12:40 PM bug #8621: Do not save empty sources
- the same should be implemented for identifiers and others
- 12:32 PM bug #8701 (New): Toggle button in GBIF Specimen import does not toggle but is select all/none
- Toggle usually inverts the current selection. But the toggle button in the specimen import does either select all or ...
- 12:07 PM feature request #8700: Geofilter for DescriptiveDataSets should be used for taxon nodes AND specimens
- This needs to be configurable.
One issue to solve is that specimen data often use other area vocabularies then ta... - 11:27 AM feature request #8700 (New): Geofilter for DescriptiveDataSets should be used for taxon nodes AND specimens
- Currently only the taxon nodes are filtered with a TaxonNodeFilter
- 11:08 AM bug #8699 (New): Add menu item to accepted name to set as basionym
- mail Eckhard von Raab-Struabe:
wie kann man eigentlich im Freitext-Editor den akzeptierten Namen als Basionym der ... - 10:30 AM feature request #8698: Sort order in status drop down of distribution editor
- Es sollte auf jeden Fall neben einer alphabetischen Sortierung auch eine geben, die sich an der Sortierung im Vokabul...
- 09:56 AM feature request #8698 (New): Sort order in status drop down of distribution editor
- Mail Eckhard von Raab-Straube:
Hallo,
eine weitere Sache:
kann ich die Reihenfolge der Statusangaben im Drop... - 01:09 AM EDIT Platform Etablierung task #8689 (Resolved): Export Flora of Greece Bupleurum using Cdm2Cdm export
- This should be ready. Database is stored at cdm_test_bupleurum on edit-test. Please review.
11/18/2019
- 10:07 PM bug #8696 (New): ehcahe discstore conflict when using the taxeditor with multiple users on the same system
- The diskstore must be created in user specific subfolders of the system temp folder.
We should consider creating a... - 06:33 PM feature request #8695 (New): Specimen online import - provider selection should remember last choise
- During the specimen online import the choice made in the provider selection always is reset to GBIF.
If the custom p... - 05:39 PM feature request #8694 (Closed): Specimen online import - Specimen Search: import button layout problem on linux KDE
- The import button seems to have a negative offset:
![](picture967-1.png) - 05:36 PM feature request #8693 (New): Specimen online import - Specimen Search: show number of result items
- The count of specimens which are found by BioCase search should be shown in the Specimen Search View.
- 05:33 PM bug #8692 (New): Specimen online import is slow
- Importing ~200 Specimens via Import > Specimen > Specimen online took more than one hour for about 200 specimens
*... - 04:29 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
- Ok, this makes it much clearer. I will have a look if this can be implemented somehow.
- 03:50 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
- This configurator is used in a lot of places: specimen tree editor, specimen facet search (experimental), TaxonServic...
- 03:08 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
- Can you give some more information about context (specimen tree, matrix, dataportal, ...?) and other information requ...
- 04:02 PM bug #6036: Problems with deleting type names
- Is this still an open issue?
- 04:00 PM bug #6182: Emptying protolog URI does not work
- Protologues soon will be handled as OriginalSourceBase.externalLink, so not so important to fix
- 03:58 PM bug #6585: Combo menu items have orange font
- Is this still an open issue? Please also check on linux.
- 03:56 PM feature request #6760: specimen import configuration
- Is this still an open issue/duplicate/related to other tickets?
- 03:35 PM feature request #6676: A user with READ access to taxa but WRITE access to factual data cannot update the factual view via the name editor
- I think this is something you are working on anyway.
- 03:33 PM feature request #6866: Improve specimen page
- Can you please relate this ticket with other tickets on this issue (specimen page)?
- 03:01 PM bug #6545 (Closed): [MASTER] Eclipse 4 bugs
- 02:52 PM bug #7512: Saving in Specimen Tree View creates unwanted scrolling on windows
- Can you please test if you can reproduce?
- 02:39 PM bug #8129 (Closed): Load images asynchronously in media details view
- 02:38 PM bug #8129: Load images asynchronously in media details view
- There is a follow up ticket #8691
- 02:36 PM bug #8691 (New): Remaining issues for asynchronous image loading
- see #8129 for open issues
- 02:33 PM bug #7911 (Worksforme): Changing areas in Distribution Editor yields to wrong column labels
- Is probably fixed.
- 02:31 PM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
- Please check what is still open
- 01:55 PM feature request #4511 (Rejected): Remove white space below EntitySelectionElement
- 01:39 PM feature request #4484: Evaluate publish flag for derivates in data portal
- There is probably a duplicate somewhere. Ticket has some importance for GBOL specimen.
- 11:42 AM bug #1924: CIHORIEAE in-references in Footnotes
- found in old Email from 2010:
----
"als Diskussionsbeitrag schicke ich auch Dir noch unsere Richtschnur für Lit... - 10:40 AM feature request #8690 (New): DistributionTreeDTO and TreeNodeDTO implemented for description/distributionInfoFor/{uuid} webservice
- The responses of the `/portal/description/distributionInfoFor/{uuid}` web-service can get quite huge for aggregated d...
- 09:18 AM EDIT Platform Etablierung task #8689 (Closed): Export Flora of Greece Bupleurum using Cdm2Cdm export
- 12:03 AM feature request #8472: Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- Close only if run on cichorieae (and others?) and the tmp code removing existing "Computed" markers is not needed any...
- 12:02 AM feature request #8472 (Resolved): Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- Should be fixed now.
11/15/2019
- 10:46 PM feature request #8688: Make OriginalSourceBase.cdmSource visible in TaxEditor
- Please decide who could be assignee. It would be nice to have it soon.
- 10:46 PM feature request #8688 (Closed): Make OriginalSourceBase.cdmSource visible in TaxEditor
- The field OriginalSourceBase.cdmSource is usually filled during aggregations (for now). Therefore it does not need to...
- 10:26 PM bug #8687 (New): Description page must show all DescriptionElement subclasses
- Currently it seems to show only Categorical and Quantitative Data. But one never knows what data will really come wit...
- 10:14 PM feature request #8686 (Closed): Support CdmLink sources in bibliography
- OriginalSourceBase has the new attribute cdmSource. In original source this can exist instead of citation. Currently ...
- 03:49 PM task #8679 (In Progress): Further unify description aggregation methods
- 03:30 PM feature request #8677: Add distribution aggregation to set subtree menu
- I updated the above list
- 03:09 PM feature request #8677: Add distribution aggregation to set subtree menu
- Katja Luther wrote:
> In #6352 the mentioned configuration is:
>
> * lowerRank - default: UnknownRank = 5c4d6755... - 02:31 PM feature request #8677: Add distribution aggregation to set subtree menu
- In #6352 the mentioned configuration is:
* lowerRank - default: UnknownRank = 5c4d6755-2cf6-44ca-9220-cccf8881700... - 01:43 PM bug #8517: SpecimenOrObservation: data from protected titleCache missig in portal pages
- Andreas Müller wrote:
> This seems to work but handling the protected title cache of the **field** unit in the **der... - 01:31 PM bug #8681 (In Progress): Fix sect. parsing
- 01:01 PM task #8651 (Closed): Unify description aggregation methods (distribution and structured descriptive data)
- 01:01 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > AK and PP as you have developed the orginal classes maybe... - 12:55 PM bug #8570 (Closed): PolytomousKeyNode.otherNode missing in REST service response
- Works as expected.
- 12:43 PM bug #8622 (Closed): Missing specimen Identifier leads to empty brackets in portal
- I tested the above mentioned pages and they look fine.
- 12:10 PM bug #8685 (Closed): Exception when calling DwC-A Export
- 12:09 PM bug #8685 (Closed): Exception when calling DwC-A Export
- mail:
Dear Andreas,
I enclose the error message I get from EDIT when I try to export the data in DwC-A format.
... - 10:21 AM bug #8684 (Resolved): ITaxonService.findTaxaByName misses initStrategy Parameter
- Applied in changeset commit:cdmlib|36a4a34fab6ca46f2d4b5c3707d55c2e2078e442.
- 10:21 AM task #8683 (Resolved): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache
- Applied in changeset commit:cdmlib|ca3e66ff9cd00985c5175e8a38ba8eab64063a13.
- 09:06 AM feature request #8661 (Resolved): "New DataSet" should ask for label and then open the dataset
- Applied in changeset commit:taxeditor|a61d053e67fceb35c6cfb0065d08651c09b002e6.
- 08:29 AM feature request #8665 (Resolved): Rename "New" to "New Tree" in Term Tree editors
- Applied in changeset commit:taxeditor|c127cb13020855f630fc93b36842e45d063997e0.
11/14/2019
- 05:16 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
- Andreas Müller wrote:
> AK and PP as you have developed the orginal classes maybe you want to have a look to the n... - 04:59 PM feature request #8673 (Closed): Allow OriginalSource to link to other CDM objects
- works as expected
- 04:52 PM bug #8676 (Closed): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- 04:49 PM bug #8684 (Closed): ITaxonService.findTaxaByName misses initStrategy Parameter
- ITaxonService.findTaxaByName misses initStrategy Parameter causing unsolvable LIEs when using via the portal service
... - 04:46 PM task #8683 (Closed): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache
- 04:42 PM bug #5048 (Closed): cdm-server causes unusual high native memory consumption for jvm
- last remaining subtask copied to #8682. ticket can now be closed.
- 04:40 PM bug #8682 (Closed): cdm-server debian packages configured for jemalloc
- in order to save native memory it is highly recommended to run the cdm-server with `jemalloc` instead of the system ...
- 04:32 PM task #8674 (Closed): configure cdm-server docker image to run with jemalloc
- everything ok!
- 02:34 PM bug #8681 (In Progress): Fix sect. parsing
- See open issue in #8253 . Maybe it is a more general problem.
"this is in Rank.java and the map idInVocMap is fil... - 02:32 PM feature request #8253 (Closed): Authors for genus autonyms
- I found the place. And probably fixed it but will not commit before release as it needs to be further tested.
Crea... - 02:19 PM feature request #8253: Authors for genus autonyms
- Andreas Müller wrote:
> Can you give some more information where to find these things? Especially "map of the idInV... - 02:14 PM feature request #8253: Authors for genus autonyms
- Can you give some more information where to find these things? Especially "map of the idInVocMap "
- 02:06 PM feature request #8253 (Feedback): Authors for genus autonyms
- 01:40 PM feature request #8253: Authors for genus autonyms
- I found the cause of the parsing problem:
when searching for the rank by Rank.getRankByIdInVoc(infraGenRankMarker)... - 01:15 PM bug #8631 (Closed): ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- 01:00 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- It looks ok in KDE!
The ticket can be closed. - 12:25 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Andreas Müller wrote:
> It look ok now. Only change I suggest: let the "Biocase provider for DNA" dropdown start at ... - 09:55 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- It look ok now. Only change I suggest: let the "Biocase provider for DNA" dropdown start at the same horizontal posit...
- 01:00 PM feature request #8667 (Closed): Make Person.orcid editable in TaxEditor
- 12:56 PM feature request #8667 (Resolved): Make Person.orcid editable in TaxEditor
- this is fixed
11/13/2019
- 03:20 PM feature request #8673: Allow OriginalSource to link to other CDM objects
- CdmLinkSourceBeanProsessor implemented but cannot test since i can't find data with CdmLinkSource
@Patrick: please... - 12:50 PM feature request #8673: Allow OriginalSource to link to other CDM objects
- We still need to check if the empty constructor of CdmLinkSource also could be protected. Patrick could you do this?
- 02:37 PM feature request #8680 (New): Unify long running tasks framework
- Long running task are currently implemented at many places and for multiple purposes.
Some things we could do:
... - 02:09 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
- Andreas Müller wrote:
>
> Before closing we should delete the redundant methods from DescriptiveDataSetService. ... - 01:06 PM task #8651 (Resolved): Unify description aggregation methods (distribution and structured descriptive data)
- We do now have a common base class and also the LongRunningTaskService used only 1 method (with config as parameter)....
- 01:48 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- I made some changes myself. Looks fine on Linux. Please test on windows.
- 12:35 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- @Patrick could you have another look, whether it looks better now. It is difficult to check for me because with windo...
- 01:03 PM feature request #8253: Authors for genus autonyms
- Katja Luther wrote:
> Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes... - 01:01 PM task #8679 (Closed): Further unify description aggregation methods
- Common base classes already exist. Further work might be:
* ~~use the same calls for "aggregateWithinTaxon", "aggr... - 12:59 PM feature request #8470 (Closed): Handle username constraints in user and group editing
- Seems to work as expected
- 12:53 PM feature request #7019 (Closed): sort import menu
- Works as expected.
- 09:14 AM feature request #7019 (Resolved): sort import menu
- 12:27 PM task #8678 (New): Update Fauna Europaea Master Db for common names with area = North America and language = Dutch (Middle)
- Some common names had "English-United States" as language and where imported with language = English and Area = North...
- 08:37 AM feature request #6337 (Rejected): simple web ui to trigger the transmission engine distribution
- I also agree
- 08:36 AM feature request #6337: simple web ui to trigger the transmission engine distribution
- Norbert wrote:
I agree that TaxEditor is the preferred place to run aggregation, see no need for an implementation...
11/12/2019
- 11:32 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- Shouldn't we rename the parameter to authorshipCache in the service layer methods. Because that is what it is.
- 09:05 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- no worries, it was fixed already when I created the ticket. I only had no time to commit and push.
- 09:03 PM bug #8676 (Resolved): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- Applied in changeset commit:cdmlib|83c72818d2e637f56f3e956c99cb0e6c1e508cbd.
- 06:10 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- Why is this in 5.11. Please fix immediately if you want to keep it here. Otherwise move.
- 05:37 PM bug #8676 (Closed): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- The find method corresponding to `countTaxaByName(Class <? extends TaxonBase> clazz, String uninomial, String infrag...
- 06:36 PM feature request #6337: simple web ui to trigger the transmission engine distribution
- Andreas (and maybe Norbert, Eckhard). Can you please decide if this is still needed at all. I guess if a TaxEditor UI...
- 06:28 PM feature request #6352: Add Transmission Engine trigger to Admin menu
- This is more or less a duplicate for #8677. There it is defined as called in "Set subtree" menu.
Probably we need di... - 06:16 PM task #8651 (In Progress): Unify description aggregation methods (distribution and structured descriptive data)
- This is basically done but there are mutliple open tasks
- 06:14 PM feature request #5176 (Resolved): TransmissionEngineDistribution can run on selected taxa
- This should be fixed.
- 06:13 PM bug #4134 (Resolved): Transmissionengine Distribution seems to miss distributions for higher Taxa
- I set to resolved as I guess it is fixed. But needs to be reviewed.
- 06:09 PM feature request #8470: Handle username constraints in user and group editing
- I guess this is for review
- 11:37 AM feature request #8470: Handle username constraints in user and group editing
- Andreas Müller wrote:
> Also in the "New" dialog there is a message "Input cannot be empty". Also here further infor... - 11:36 AM feature request #8470 (Resolved): Handle username constraints in user and group editing
- Andreas Müller wrote:
> Can you please leave a message how exactly you changed the issue discussed in note 7 and 8. ... - 10:53 AM feature request #8470: Handle username constraints in user and group editing
- Also in the "New" dialog there is a message "Input cannot be empty". Also here further information on the allowed cha...
- 10:52 AM feature request #8470: Handle username constraints in user and group editing
- Can you please leave a message how exactly you changed the issue discussed in note 7 and 8. The discussion was not en...
- 10:49 AM feature request #8470: Handle username constraints in user and group editing
- Andreas Müller wrote:
> Now when creating a new user the bulkeditor is dirty. When NOT saving the bulk editor and af... - 10:47 AM feature request #8470 (Feedback): Handle username constraints in user and group editing
- Now when creating a new user the bulkeditor is dirty. When NOT saving the bulk editor and after reopening the bulk ed...
- 06:08 PM feature request #8677 (Closed): Add distribution aggregation to set subtree menu
- There is a new long running task "DisributionAggregation" which runs on a TaxonNodeFilter (#8651 and others). It shou...
- 03:22 PM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)
- Die Umfrage ist abgeschlossen und ausgewertet (attachment:Taxeditor-Terms-Poll-2019.pdf):
-----
Hallo zusammen,
... - 12:04 PM bug #8675: Make Ranks sortable by natural order
- Best place might be the Names-Ranks preference page
- 12:03 PM bug #8675 (New): Make Ranks sortable by natural order
- This was already available in past but seems being lost in current version.
- 11:42 AM bug #8628 (Closed): Add ORCID as person identifier
- this message is easier to understand how the identifier should look like
- 09:40 AM bug #8628 (Resolved): Add ORCID as person identifier
- I adapted the error messages a bit. Can you please review again?
- 11:40 AM bug #8664 (Closed): SQLGrammarException when opening Specimen selection
- I tested again and it seems to work now.
- 11:34 AM feature request #8253 (Resolved): Authors for genus autonyms
- By the way the parser for me now also works with names like "Achnanthes Bory sect. Achnanthes". So can you please che...
- 11:30 AM feature request #8253: Authors for genus autonyms
- Katja Luther wrote:
> Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes... - 10:38 AM feature request #7019: sort import menu
- Kannst du dann noch umbenennen: ABCD => ABCD file; Excel Normal Explicit Taxa => Exel Normal Explicit; RIS Referenze...
- 10:37 AM feature request #7019: sort import menu
- Andreas Müller wrote:
> It seems to depend on experimental being switcht on or not. In later case the old menu appea... - 10:24 AM feature request #7019: sort import menu
- It seems to depend on experimental being switcht on or not. In later case the old menu appears.
- 10:02 AM feature request #7019: sort import menu
- I still get the old menu no matter what I do. I deleted the .metadata folder, I downloaded a completely new TaxEditor...
11/11/2019
- 11:38 PM feature request #4366: Transmissionengine Distribution: implement rules for source references
- From AG:
The original BM Transmission Engine was handled references ONLY for the Med_Check_List 2 use cases. For E... - 11:38 PM task #8674: configure cdm-server docker image to run with jemalloc
- the new docker image is now based on ubuntu:bionic since jemalloc in alpine Linux fails with segfault.
Therefore I ... - 11:33 PM task #8674 (Resolved): configure cdm-server docker image to run with jemalloc
- Applied in changeset commit:cdm-server|a9e82e311a06d536699eefabdf13b89fbb8e6220.
- 02:41 PM task #8674 (Closed): configure cdm-server docker image to run with jemalloc
- 02:04 PM feature request #8667: Make Person.orcid editable in TaxEditor
- Please add space after "ORCID won't be saved!" , before the real error message.
- 02:01 PM feature request #8667 (Feedback): Make Person.orcid editable in TaxEditor
- The error message does not always have enough space
![](picture969-1.png) - 12:39 PM feature request #8667 (Resolved): Make Person.orcid editable in TaxEditor
- The field is added to the editor. please review.
- 01:58 PM feature request #8673: Allow OriginalSource to link to other CDM objects
- Can you please review?
Please also have in mind that webservices should not deliver the full cdmobject and maybe e... - 01:52 PM bug #8631 (Feedback): ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- So the layout still needs some update for linux, I guess.
- 11:08 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- This is how it looks for me. Started the editor from the IDE.
![](picture468-1.png) - 12:59 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- configuring the test server to use `jemalloc` instead of `malloc?` drastically reduced the native memory overhead:
... - 12:50 PM bug #8628: Add ORCID as person identifier
- This is difficult because multiple formats are possible (with http, https, only orcid.org or completely missing all p...
- 11:06 AM bug #8628 (Feedback): Add ORCID as person identifier
- Could you add an example in the exception message to show how it should look like. And that an x at the end is possib...
- 12:37 PM feature request #8253 (Feedback): Authors for genus autonyms
- Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes sect. Achnanthes Bory,...
- 12:32 PM feature request #8470: Handle username constraints in user and group editing
- please review
- 11:14 AM feature request #7019: sort import menu
- Tried this morning. Seems to work. Please download and try again.
- 09:47 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
- mail Inan Erdogan:
ich glaube das passiert bei mir fast ausschliesslich, wenn ich entweder im Hauptansichtsfeld de... - 09:37 AM bug #4134: Transmissionengine Distribution seems to miss distributions for higher Taxa
- AM:
Ja, ich habe dann später auch festgestellt, dass die Aggregation bis zum Tribus in dem Fall gewünscht war. Dah... - 09:28 AM bug #4134 (In Progress): Transmissionengine Distribution seems to miss distributions for higher Taxa
- NK:
Vor eine Neuaggregation können und sollten die Neuberechnungen auf Subtribus- und Tribus-Ebene gelöscht werden...
11/09/2019
- 05:43 PM feature request #8673 (Resolved): Allow OriginalSource to link to other CDM objects
- Applied in changeset commit:cdmlib|93ad7e545dc77e63b68e434c62c8560a68bb9dfb.
- 12:33 PM feature request #8673 (Closed): Allow OriginalSource to link to other CDM objects
- Currently links are only available to Reference and (external) URIs. However, especially for adding sources to aggreg...
- 12:23 PM feature request #4366 (Feedback): Transmissionengine Distribution: implement rules for source references
- As this ticket is E+M specific, discusses only specific cases and neglects also to mention discussion from #2625 (att...
- 11:40 AM feature request #4366: Transmissionengine Distribution: implement rules for source references
- Andreas Kohlbecker wrote:
> Replying to [[comment1|a.kohlbecker]]:
>
> > Hallo Andreas,
>
> >
>
> > dem l... - 12:17 PM task #8672 (In Progress): Source handling during (distribution) aggregation
- There are different possibilities to handle sources during aggregation of factual (distribution and structured descri...
- 11:24 AM bug #8670: Unwanted distribution aggregation/display on 2 levels
- > NK:
> Frage: wenn in allen Fällen auf Level 3 aggregiert werden muss (**ist das so?**), lässt sich dann nicht weni... - 12:29 AM bug #8670: Unwanted distribution aggregation/display on 2 levels
- It needs to be decided if this is an aggregation issue or a display (output) issue.
- 12:29 AM bug #8670 (Closed): Unwanted distribution aggregation/display on 2 levels
- NK:
Der Schritt der Aggregation auf der Ebene des primären Taxons von level 3 auf level 4 führt:
(a) zu einer un... - 10:54 AM task #8671: Distribution in E+M (BM) on different levels
- SQL to find such cases in E+M BM:
~~~
SELECT occ.SummaryStatus, n.FullNameCache, pt.PTRefFk, n.NameCache
FROM em... - 10:08 AM task #8671: Distribution in E+M (BM) on different levels
- Eine Lösung für dieses Problem könnte sein, dass man nicht (wie in #8670) die Areale aufwärts aggregiert sondern abwä...
- 09:28 AM task #8671 (Rejected): Distribution in E+M (BM) on different levels
- We may need to solve the below problem in Euro+Med (Berlin Model) with new functionality in CDM.
=====
AM:
I...
11/08/2019
- 11:43 PM bug #4134 (Feedback): Transmissionengine Distribution seems to miss distributions for higher Taxa
- Das ist für mich nicht logisch. Auch wenn die Aggregation über die Areale auch auf höheren Rangstufen erfolgte (was i...
- 10:12 PM bug #8669 (New): Permission problems when caches are updated without permission
- The problem is described in #8650 . There a person title had changed and therefore the team titlecache was updated du...
- 10:08 PM bug #8650: PermissionDenied Exception for Teams when editing distributions
- I remove from milestone as this is a pure data related fix.
We need a new ticket for handling the cache update pro... - 08:58 PM feature request #8668 (New): Show Person.orcid in dataportal
- ... but for this we first need an Person or Agent page I guess. So this ticket is blocked.
See https://support.orc... - 08:56 PM feature request #8667 (Closed): Make Person.orcid editable in TaxEditor
- this should be done similar to DOI in Reference class
- 08:54 PM bug #8628: Add ORCID as person identifier
- This should be fixed now. Please review.
- 08:47 PM bug #8628 (Resolved): Add ORCID as person identifier
- Applied in changeset commit:cdmlib|6e1b0ff9bdf5c8e20f1df4e5542aa44554252a81.
- 04:52 PM bug #8666 (New): Login fails if classification can not be loaded
- If the sortindex of a root taxon is destroyed the classification can not be loaded.
Loading classification is curr... - 03:20 PM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors
- in context menu
- 03:14 PM feature request #8253: Authors for genus autonyms
- Very strange, it seems to work with Achnanthes Bory subg. Achnanthes but not with Achnanthes Bory sect. Achnanthes. T...
- 02:16 PM feature request #8253: Authors for genus autonyms
- Hm, strange, it still doesn't seem to work. Though there is a test with the exact same string "" in NonViralNameParse...
- 01:26 PM feature request #8253: Authors for genus autonyms
- should be fixed now
- 01:24 PM feature request #8253 (Resolved): Authors for genus autonyms
- Applied in changeset commit:cdmlib|6ef5a0b16df87d2bd76e8e14cc714cd845f17366.
- 12:14 PM feature request #8253: Authors for genus autonyms
- OK, the problem is I used parseFullName in NonViralNameParserImplTest. But the editor use parseReferencedName I guess...
- 10:49 AM feature request #8253 (Feedback): Authors for genus autonyms
- when entering Achnanthes Bory sect. Achnanthes in NameEditor the rank and epithets are not parsed correctly.
The e... - 03:06 PM bug #8429: Rename DeterminationEvent_Reference.setOfReferences_id
- Andreas Müller wrote:
> Please review.
- 03:05 PM feature request #8441: Add FeatureState class
- Can you still remove? Did you try to remove things? So no orphan-removal issues?
- 03:04 PM feature request #8398 (Closed): Add nomenclatural code edition to ruleConsidered
- Andreas Kohlbecker wrote:
> excellently implemented, thanks a lot!
>
> I extended the protected constructors in `... - 02:44 PM feature request #7019 (Feedback): sort import menu
- I can't see any difference tried with update and install new version of current nightly.
![](picture714-1.png) - 12:27 PM feature request #7019 (Resolved): sort import menu
- Applied in changeset commit:taxeditor|708b6366b5bba1a1669243d3f7145a1967258e04.
- 11:42 AM feature request #7019: sort import menu
- We decided to use "Specimen online"
- 11:07 AM feature request #7019: sort import menu
- Andreas Kohlbecker wrote:
> "Specimen (webservice)" still is not a very good label, alternatives are
>
> * "Speci... - 10:54 AM feature request #7019: sort import menu
- "Specimen (webservice)" still is not a very good label, alternatives are
* "Specimen (BioCase)"
* "Specimen (glob... - 10:47 AM feature request #7019: sort import menu
- For now we could simply use separators in the menu to separate specimen from taxa and those from references etc. But ...
- 10:44 AM feature request #7019: sort import menu
- Also we should rename "Import Specimen" to "Specimen (webservice)" and ABCD to "ABCD file" to give them a bit more se...
- 02:42 PM feature request #8470 (Resolved): Handle username constraints in user and group editing
- Applied in changeset commit:taxeditor|a0e1ca0573bdcbd929a27e347010da83a453c93c.
- 02:00 PM feature request #8470: Handle username constraints in user and group editing
- hmm, I think users and groups are special. There names are are unique identifiers and should not be changed anymore. ...
- 11:18 AM feature request #8470: Handle username constraints in user and group editing
- Another question:
at the moment the user is created and saved immediately, but the group is created and saved when... - 02:19 PM bug #8664: SQLGrammarException when opening Specimen selection
- I can't currently review as the accoding DB can't be connected to via TaxEditor at the moment. But code looks ok. I w...
- 10:28 AM bug #8664 (Resolved): SQLGrammarException when opening Specimen selection
- 11:00 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Andreas Müller wrote:
> Can you please leave a note if this is easy to fix? Otherwise please move to new ticket as t... - 10:57 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Can you please leave a note if this is easy to fix? Otherwise please move to new ticket as the layout is not really p...
- 10:35 AM feature request #8410 (Closed): Add nomenclatural code edition to ruleConsidered in TaxEditor
- It looks better now. I think we can close the ticket.
- 09:42 AM bug #8632 (Closed): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- 09:14 AM feature request #8613 (Closed): For distribution editor default reference should be used also when new source is created
- Seems to work now
11/07/2019
- 10:19 PM bug #8664: SQLGrammarException when opening Specimen selection
- I guess an empty list was the reason here. Isn't this fixed yet? If not I guess it is very easy to fix and we should ...
- 03:56 PM bug #8664 (Closed): SQLGrammarException when opening Specimen selection
… for „Test WorkingSet“ in MatrixEditor
~~~
login : admin
editor version : 5.11.0.201911041248
serve...- 05:12 PM feature request #8613 (Resolved): For distribution editor default reference should be used also when new source is created
- Katja Luther wrote:
> Andreas Müller wrote:
> > It still does not work if a source existed already before opening t... - 05:00 PM feature request #8613 (In Progress): For distribution editor default reference should be used also when new source is created
- Andreas Müller wrote:
> It still does not work if a source existed already before opening the DistrEditor for the gi... - 03:43 PM feature request #8613 (Feedback): For distribution editor default reference should be used also when new source is created
- It still does not work if a source existed already before opening the DistrEditor for the given record. Please test i...
- 09:10 AM feature request #8613 (Resolved): For distribution editor default reference should be used also when new source is created
- Andreas Müller wrote:
> Does not work for me yet. The reference field is still empty if I selected a base source and... - 03:55 PM bug #8663 (Duplicate): LIE when trying to save a tree node
I tried to edit “Character Tree Test”-“second test structure third property” node in Character node editor.
Befo...- 03:53 PM bug #8662 (Closed): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
- … im Taxon filter als Kontextmenü. Auch wenn noch gar kein Taxon dort angezeigt wird.
Auch wenn Taxa existier... - 03:52 PM feature request #8661 (Closed): "New DataSet" should ask for label and then open the dataset
- … im Descriptive Data Set Navigator sollte den Descriptive Data Set Editor öffnen, damit das Dataset oder zumindest s...
- 03:51 PM feature request #8642 (Closed): Add tree editor for rank, NamedArea and PresenceAbsence
- Generic term tree menu creation moved to new ticket #8660. Also handling of not allowed duplicates #8655.
Close th... - 10:24 AM feature request #8642 (Resolved): Add tree editor for rank, NamedArea and PresenceAbsence
- Order is fixed.
Create new ticket for remaining issues -> #8655 - 03:50 PM bug #8660 (Duplicate): Generic menu creation for Term trees
- Currently the term tree menu is hardcoded. It should be implemented generically as the term (vocabulary) menu.
Thi... - 03:46 PM feature request #8648 (Closed): Simplify name details view configuration
- Works as expected now.
- 03:40 PM feature request #8470 (Feedback): Handle username constraints in user and group editing
- Please also implement for groups.
- 03:37 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- I don't insist in keeping this function in the ABCD import. I only feared that we lose valuable functionality. theref...
- 03:27 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- I suggest to close this ticket and if needed open a new ticket to discuss the necessity (and best implementation) of ...
- 03:09 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- As mentioned by Katja before I do not understand why we need it. It is work to keep such things running and as Katjas...
- 01:51 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Katja Luther wrote:
...
> ... But when the problems solved we can reintegrate it to the file import. It is only... - 01:33 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Andreas Kohlbecker wrote:
> Katja Luther wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
> > >... - 01:23 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > Andreas Kohlbecker wrote:
> > >... - 01:14 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
>... - 01:05 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Patrick Plitzner wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > We used the specimen search ... - 12:39 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > We used the specimen search for DNA in the Taxeditor. This ... - 11:49 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Andreas Müller wrote:
> why did you give this to Lutz? I guess this was a mistake?
OOPS! Thank you for fixing this. - 11:47 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- why did you give this to Lutz? I guess this was a mistake?
- 11:30 AM bug #8632 (Feedback): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- 11:28 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Patrick Plitzner wrote:
> We used the specimen search for DNA in the Taxeditor. This still works so no problems from... - 10:13 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- So AK, you may decide if this ticket can be fully closed. But I guess so.
- 10:05 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- We used the specimen search for DNA in the Taxeditor. This still works so no problems from my side
- 03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
- Andreas Kohlbecker wrote:
> There is still a problem related to this issue.
>
> The TaxonNavigator is not being r... - 03:22 PM bug #8659 (Closed): Taxon navigator: not refreshed after ABCD file import
- Copied from #8582
The TaxonNavigator is not being refreshed after importing an ABCD file, newly created classifica... - 03:19 PM feature request #8596 (Closed): Add a list of descriptions to the taxon page
- 01:48 PM feature request #8596: Add a list of descriptions to the taxon page
- from my perspective can this ticket be closed.
- 01:46 PM feature request #8596: Add a list of descriptions to the taxon page
- Patrick Plitzner wrote:
> Andreas K.: You mentioned that it is possible to assign **weights** to these blocks. Wit... - 12:36 PM feature request #8596: Add a list of descriptions to the taxon page
- But the tree that I mentioned can be used for both the block here and for the "description detail page" (#8595)
- 12:34 PM feature request #8596: Add a list of descriptions to the taxon page
- Patrick Plitzner wrote:
> Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here... - 12:30 PM feature request #8596: Add a list of descriptions to the taxon page
- Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here. Just about the order of T...
- 12:09 PM feature request #8596: Add a list of descriptions to the taxon page
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> Can you please explain this a bit more? Is there a Feature tr... - 11:57 AM feature request #8596: Add a list of descriptions to the taxon page
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Do we need a configuration method to define the "Description ... - 11:45 AM feature request #8596: Add a list of descriptions to the taxon page
- Andreas Müller wrote:
> Do we need a configuration method to define the "Description (aggregated)" feature tree? Oth... - 09:39 AM feature request #8596: Add a list of descriptions to the taxon page
- Do we need a configuration method to define the "Description (aggregated)" feature tree? Otherwise it seems to be imp...
- 09:22 AM feature request #8596: Add a list of descriptions to the taxon page
- Currently only the aggregated descriptions are shown.
What still needs to be implemented is the sort order of this... - 03:18 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- should we put back to "In Progress" or/and move to next milestone?
- 12:52 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- after applying the jdk8 memleak fix the effect on the cdm-server is not as good as for the cdmlib-remote-webapp alone...
- 02:32 PM feature request #8595: Create description detail page
- Code review notes:
* description.inc#1179 : `$enclosing_tag = cdm_feature_block_element_tag_name($feature_block_se... - 12:46 PM feature request #8595: Create description detail page
- Added specs from additivity wiki
- 12:05 PM feature request #8595: Create description detail page
- There are still many open issues (most of them discussed in additivity). So we need a follow up ticket. This ticket a...
- 11:38 AM feature request #8595 (Feedback): Create description detail page
- It is hard to review this ticket since the requirements to the layout of the page are missing in the ticket. Please a...
- 09:20 AM feature request #8595: Create description detail page
- Example: http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/description/dc871867-3d87-4fce-b42...
- 01:09 PM bug #8605 (Worksforme): ClassCastException in Feature editor when adding new Defined Term
- I can't reproduce this either, so it seems as if this has been fixed in the context of another task
- 11:34 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term
- I tested this with the latest nightly on the mentioned database but could not reproduce this behavior.
- 12:41 PM bug #8225: Deleting one of two type designations removes both
- Andreas Müller wrote:
> I change back version as the preliminary fix was done in 5.6 I think. OK?
+1 - 10:16 AM bug #8225: Deleting one of two type designations removes both
- I change back version as the preliminary fix was done in 5.6 I think. OK?
- 10:10 AM bug #8225 (Closed): Deleting one of two type designations removes both
- Created a new ticket for a better fix -> #8654
- 12:32 PM feature request #8657 (Closed): Order description element in portal according to CharacterTree
- 12:13 PM feature request #8656 (Closed): [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix?
- du filterst in aggregateDescription() nur DescriptionElements die Characters als Feature haben. Das
~~~java
desc... - 11:35 AM feature request #8044 (Resolved): Add "Move to..." menu to term editor
- 11:15 AM bug #7143 (Closed): Finish not enabled when unprotecting titleCache in new Person dialog
- confirmed!
- 09:08 AM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
- this is fixed now.
- 11:09 AM feature request #8238: Allow interoperability between term trees
- Moving to next milestone for remaining issues
- 10:58 AM feature request #6849 (In Progress): [DISCUSS] How to handle "kind of" term creation in TermEditor
- 10:21 AM feature request #6849 (Closed): [DISCUSS] How to handle "kind of" term creation in TermEditor
- Closing this old discussion because the project ends. Documentation can be found in the ticket description and in the...
- 10:51 AM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor
- Dump deleted as it was not crucial to understand the problem.
- 10:37 AM feature request #8467: Save a "snapshot" of the SpecimenDescriptions used for aggregation
- moving to additivitiy milestone
- 10:36 AM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
- moving to additivitiy milestone
- 10:23 AM feature request #8655 (Duplicate): Handle duplicates in term tree editor
- Copied from #8642:
There is one related issue: if you create a new tree, by default "allow duplicates" is false, w... - 10:22 AM bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes
- moving to next milestone
- 10:10 AM task #8130: Check if related feature data is cleared when supported facts type is changed
- Move to next milestone for remaining discussion
- 10:09 AM bug #8654 (New): Find a better solution for deleting type designations
- Follow up of #8225
- 10:07 AM feature request #6774: Implement OWL export
- Move to next milestone because this is still considered experimental
- 10:06 AM feature request #8248: Implement OWL import
- Move to next milestone because this is still considered experimental
- 09:58 AM bug #8533 (Closed): missing collector and fieldnumber in abcd import
- > Why did you move it to 5.12. It has status resolved and should therefore be reviewed in 5.11 milestone. If there is...
Also available in: Atom