Activity
From 10/30/2019 to 11/28/2019
11/28/2019
- 06:57 PM bug #8733 (Closed): Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- to reproduce
1. create Descriptive data set in caryophyllales_spp
* adding *Rhipsalis pilocarpa* by drag and dro... - 06:33 PM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descriptive Dataset Editor
- just exactly what is written in the subject.
- 03:55 PM Revision ec07174a (cdmlib-apps): fix E+M Activator
- 03:54 PM Revision 46ae6d5a (taxeditor): ref #8679 Set taxon node filter and aggregation mode
- 03:54 PM Revision 7079d656 (cdmlib-apps): cleanup
- 03:53 PM Revision 456a8f57 (taxeditor): Fix potential NPE
- 03:52 PM Revision 2adab869 (cdmlib-apps): update BgbmInstancesUpdater
- 03:45 PM bug #8731: BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- An import of specimens is not possible wit the current code base in the development branch.
- 03:40 PM bug #8731 (Closed): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- I am not sure about the timing of the situation in which this exception occurred.
I was searching the `http://ww3.... - 03:31 PM Revision 2b226eee (cdmlib): ref #8679 Add checks and repairs for valid quantitative data
- 03:31 PM Revision 2bc176df (cdmlib): Enhance toString()
- 03:31 PM Revision 33373464 (cdmlib): ref #8679 Remove usage of apache commons math
- 03:23 PM bug #8730 (New): OWL Term export progress monitor reports wrong process percentage
- The initial percentage is really funny:
 - 12:30 PM Revision 4bbc2279 (cdmlib): minor
- 12:29 PM bug #8720: blank perspective after using "Switch User"
- the perspective looked like this:
today is the first day this is not happening for quite ... - 12:05 PM bug #8720: blank perspective after using "Switch User"
- I am not sure if I fully understand the problem. When I try to change the user I get the "Taxonomic" perspective but ...
- 12:18 PM Revision 7903d041 (cdmlib): ref #8679 PropertyPath and code cleanup
- 12:18 PM Revision 5ef244fc (cdmlib): ref #8679 Convert to base class aggregation architecture
- - convert aggregation of quantitative data to parent
- convert aggregation of categorical data to parent - 12:18 PM Revision ba1bc425 (cdmlib): Enhance toString()
- 12:18 PM Revision 93c52359 (cdmlib): ref #8679 Convert to base class aggregation architecture
- - init dataset in preAccumulate
- filter SpecimenDescriptions by data set - 12:18 PM Revision 185e63ee (cdmlib): ref #8679 Convert to base class aggregation architecture
- - convert aggregation of quantitative data within taxon
- 12:18 PM Revision 54ed2cf2 (cdmlib): ref #8679 Add apache commons math to pom
- 12:18 PM Revision 497e4d3a (cdmlib): add toString()
- 12:18 PM Revision 1f0292f8 (cdmlib): ref #8679 Convert to base class aggregation architecture
- - convert aggregation of categorical data within taxon
- 12:18 PM Revision 1eb0391c (cdmlib): Add count to toString()
- 11:51 AM bug #8729: Refresh Taxon Navigator after Specimen import
- Seems to be very similar to #8659. So we may think about putting it also to 5.12. Katja, what do you think?
- 10:54 AM bug #8729 (New): Refresh Taxon Navigator after Specimen import
- After a successful specimen import vi BioCASE Provider the Taxon Navigator is not being refreshed.
New created Clas... - 11:03 AM Revision 0e6482c8 (cdmlib): ref #8724 fix JAXB for CdmLink
- 10:04 AM Revision 4cda0d0e (cdmlib): ref #7623: fix NPE
- 09:34 AM bug #8728: Specimen import via BioCASE silently fails
- Andreas Kohlbecker wrote:
> The problem in one specific case was that the user was not permitted to update a person:... - 09:26 AM bug #8728: Specimen import via BioCASE silently fails
- Next Problem:
~~~
[CREATE] not permitted for 'kurs1' on TaxonNode[uuid:79c3deac-ee1d-4622-91fa-746be0894161', toS... - 08:51 AM bug #8728: Specimen import via BioCASE silently fails
- The problem in one specific case was that the user was not permitted to update a person:
~~~
[UPDATE] not permitt...
11/27/2019
- 04:42 PM bug #8728: Specimen import via BioCASE silently fails
- As the import works without problems with the `admin` user, it seems as if this is a permission problem.
@Katja: 1... - 04:24 PM bug #8728: Specimen import via BioCASE silently fails
- this is reproducible
once this error has occurred the taxeditor has to be restarted, otherwise further import atte... - 04:15 PM bug #8728 (New): Specimen import via BioCASE silently fails
- ABCD Specimen import via BioCASE provider silently fails
Logged in as user with GAs: `Editor` + `TAXONNODE.[CREATE... - 03:39 PM EDIT Platform Etablierung task #8727 (In Progress): Test Workshop workflow
- 03:21 PM EDIT Platform Etablierung task #8727 (Closed): Test Workshop workflow
- **Use the simple editor user accounts: kurs1..5**
The section of taxa to test the workflow with is based in the ... - 03:00 PM Revision 700aa970 (cdmlib): Fix potential NPE
- 02:58 PM Revision 5a36818d (cdmlib): ref #8724 handle taxon in CdmLinkSource
- 02:39 PM feature request #8686: Support CdmLink sources in bibliography
- Further more there is a discussion if links to taxa should be direct links from the description(element) to the taxon...
- 02:38 PM feature request #8686: Support CdmLink sources in bibliography
- Support for link to taxa has been added in #8724. So we need to check or implement that also links to taxa are handle...
- 02:36 PM feature request #8724 (Resolved): Allow OriginalSource to link to Taxon
- 02:25 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
- When aggregating (or moving) data one may want to link to the taxon the data originally comes from so we need a possi...
- 02:35 PM feature request #8726 (New): the search preference search field should be a list
- The preference defining the search field should be not a single value, but a list of fields on which the seach should...
- 02:34 PM feature request #8725 (Feedback): Add abbreviation to namedArea text field in distribution details view
- Some named areas have the same label therefore it would be nice to show an abbreviation like idInVoc. This should be ...
- 02:31 PM Revision 35a4f2f3 (cdmlib): ref #8724 add Taxon to ICdmTarget
- 02:31 PM Revision 41e8eb66 (cdmlib): minor
- 02:28 PM Revision de51cd68 (cdmlib): ref #7623: improve gathering agent parsing and query generation
- 02:24 PM Revision f084efb4 (taxeditor): ref #8677: layout issues in aggregation dialog
- 09:41 AM feature request #8721 (In Progress): Use webservice to get all biocase provider listed by gbif
- The prefilled combo and the filtering for entered text is implemented in the specimen dialog now.
- 09:38 AM Revision 14a62f14 (taxeditor): ref #8721: use webservice to get all biocase provider
- 09:18 AM Revision cf6340d0 (cdmlib): ref #8679 Test leaf color
- 09:11 AM bug #8723 (Worksforme): Distribution detailsview: changing the area removes the state
- When changing the area of a distribution the status is not displayed anymore. But the distribution still has the stat...
- 08:57 AM Revision 5125fb32 (cdmlib): fix NPE in media rights part of biocase import
- 07:31 AM Revision eace364b (cdmlib): ref #8679 Add leaf color
11/26/2019
- 06:41 PM Revision 6b6ebf81 (cdmlib): ref #8679 Refactoring
- 06:16 PM Revision 4bf5063f (cdmlib): ref #8679 Add specimen to sibling taxon
- 05:48 PM Revision c14bf2dc (cdmlib): Avoid empty description elements
- 05:09 PM Revision 9af9bac7 (taxeditor): ref #8679 adapt TaxEditor to changes in DescriptionAggregation dataset handling
- 05:06 PM Revision 3177d9fb (taxeditor): ref #8679 adapt TaxEditor to changes in DescriptionAggregation dataset handling
- 05:01 PM Revision f34d4889 (cdmlib): adapt TestAggregations to areaUuidList (2)
- 04:45 PM Revision 79e76c25 (cdmlib): adapt TestAggregations to areaUuidList
- 04:42 PM Revision ab856113 (cdmlib): update TestAggregations
- 04:39 PM Revision 672c7781 (cdmlib): Avoid empty description elements
- 04:32 PM Revision 84b66dd2 (cdmlib): cleanup
- 04:32 PM Revision d22d2ab0 (cdmlib): ref #8679 add tests to StructuredDescriptionAggregation and fix toGrandParent issue and allow Feature
- 04:09 PM EDIT Platform Etablierung task #8722 (Closed): Provide Manuals and Dokumentation for the Kurs „Integrated Taxonomy“ WiSe 2019/20
- Documentation needed for the Kurs:
* Matrix-Editor manual - is being prepared ...
* List of user accounts for dem... - 03:59 PM EDIT Platform Etablierung task #8712 (Closed): Kurs "Integrated Taxonomy" : prepare setup for workshop computers
- 03:01 PM Revision 1520e79e (cdmlib): implement another possibility of gathering agent text in abcd (agentText)
- 02:53 PM feature request #8721 (Closed): Use webservice to get all biocase provider listed by gbif
- For the specimen search it would be nice to have a list of all biocase provider. (Jörg provided us a webservice)
W... - 01:39 PM Revision 515150ac (cdmlib): ref #8677: revert a change of last commit
- 12:58 PM Revision ff7c0745 (cdmlib): ref #8677: use changes DistributionAggregationConfig in controller
- 12:31 PM Revision 68362152 (taxeditor): ref #8677: add distribution aggregation as long running task to editor - continue
- 12:10 PM Revision 44ba5690 (taxeditor): ref #8677: add distribution aggregation as long running task to editor
- 12:10 PM Revision 421a91e6 (taxeditor): smaller changes in specimen import view
- 12:08 PM Revision 26cfae1e (cdmlib): ref #8677: use uuid list instead of namedArea list in DistributionAggregationConfig
- 10:43 AM bug #8720 (New): blank perspective after using "Switch User"
- When switching the user *General > Switch User* all views and editors are closed, making the perspective blank. After...
- 09:19 AM bug #8719 (Resolved): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
- Applied in changeset commit:cdm-dataportal|56d39875a598bad7e9c7591d5436b0ac63160cae.
- 08:23 AM bug #8719 (Closed): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
- this bug has been discovered in the process of automatic creation of workshop servers (`server-scripts/workshop-setup...
- 09:19 AM Revision 56d39875 (cdm-dataportal): fix #8719 add missing page and cache values for new blocks in installation profile
- 12:01 AM Revision 775d38e1 (cdmlib): ref #8469 avoid merge to singular branches
11/25/2019
- 10:54 PM Revision 9415e8dd (cdmlib): cleanup
- 10:53 PM Revision dd864603 (cdmlib): ref #8469 fix min max issue
- 07:32 PM Revision ca93e81e (cdmlib): ref #8469 handle all sub-branch taxa on the level they belong to
- 02:51 PM feature request #8460: Show examples in text field
- Try to implement a base functionality.
This is already implemented in taxon search. - 12:14 PM Revision d1504e5a (cdmlib): ref #8469 first handling of taxa covering all subbranches, but probably wrong approach
- 12:14 PM Revision 85d65189 (cdmlib): ref #8469 fix no feature left, prepare taxon covering all subbranches, cleanup
- 12:14 PM Revision cde6a65d (cdmlib): cleanup
- 09:00 AM Revision ab96570c (cdmlib): ref #8713 Only add aggregated cat. data if states are present
- 08:52 AM Revision c8def030 (cdmlib): ref #8450 Only add aggregated quant. data if data present
11/23/2019
11/22/2019
- 10:06 PM Revision ad5bae70 (cdmlib): cleanup
- 10:06 PM Revision ad8460be (cdmlib): ref #8679 preliminary fix failing test for rank aggregation with absent status
- 09:18 PM Revision f6fda820 (cdmlib): ref #8679 remove old COMPUTE marker and move ignore lists to configurator and some cleanup
- 01:27 PM bug #8718: polytomousKey page: better handling of invalid uuids
- Patrick, this is relevant for additivity (currently PKs get a new uuid with every generation) so we may think about m...
- 12:53 PM bug #8718 (Closed): polytomousKey page: better handling of invalid uuids
- ich habe gerade gesehen, dass ein PolyKey, wenn dessen uuid nicht stimmt unschöne Fehler schmeißt:
http://test.e-t... - 10:43 AM Revision 1b7e1801 (cdm-dataportal): ref #8595 Fix moved method invocation
- 10:41 AM Revision eb89b236 (cdm-dataportal): ref #8595 Fix feature table when no data available
- 10:38 AM Revision 5ac909c0 (cdm-dataportal): ref #8595 Only show available datasets label when data available
- 12:12 AM Revision 8e29c4cc (cdmlib): ref #8469 introduce KeyTaxon to allow multiple data and multiple descriptions per taxon
11/21/2019
- 05:19 PM Revision 9b434f6a (cdm-dataportal): ref #8657 moving description methods to description.inc
- 05:13 PM Revision ab025781 (cdm-dataportal): ref #8686 removing linebreaks from description labels and simlifying render_cdm_description()
- 04:16 PM task #8716 (Resolved): Configure taxeditor to run with GTK2 in linux
- please report if you are having any problems due to the switch to GTK2
- 04:09 PM task #8716: Configure taxeditor to run with GTK2 in linux
- Andreas Kohlbecker wrote:
> as documented in https://wiki.eclipse.org/SWT/Devel/Gtk/GtkVersion the gtk version can b... - 04:03 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
- as documented in https://wiki.eclipse.org/SWT/Devel/Gtk/GtkVersion the gtk version can be set via
~~~
--launcher... - 01:12 PM task #8716 (Closed): Configure taxeditor to run with GTK2 in linux
- Der Taxeditor verwendet SWT in der Version 3.105.3.v20170228-0512 (Id: org.eclipse.swt, Version: 3.105.3.v20170228-05...
- 04:15 PM Revision 2279c433 (taxeditor): ref #8716 setting GTK to version 2 in the product launcher configuration
- 04:13 PM Revision c7e854d5 (cdm-dataportal): ref #8595 Only show feature table when data available
- 03:58 PM bug #8717 (New): Improve display of PolytomousKey nodes which have a feature
- If a PKN has a feature and not a statement it is repeated multiple times for the child alternatives. A better layout ...
- 03:58 PM Revision 9078b9c6 (cdm-dataportal): ref #8686 fixing refactoring bug
- 03:29 PM bug #8313 (Feedback): Multiple categorical data get deleted when clicked on in Character Matrix
- Reopen as it happens again.
How to reproduce: in any categorical cell select 2 states. Leafe the cell (it shows bo... - 03:21 PM feature request #8714 (Resolved): description page: Show multiple datasets per description as list of links
- Applied in changeset commit:cdm-dataportal|cf89f7e20f7cbd623d7d373bbf9061003f175179.
- 11:42 AM feature request #8714 (Resolved): description page: Show multiple datasets per description as list of links
- A description can have multiple descriptive data sets. These define which features are displayed and in which order.
... - 03:21 PM Revision cf89f7e2 (cdm-dataportal): fix #8714 Show list of available datasets when description has multiple
- 02:59 PM Revision 185dfa24 (cdmlib): ref #8469 fix multiple dependencies for 1 parent feature issue
- 02:57 PM Revision 92a7f32b (cdmlib): cleanup
- 02:38 PM feature request #8595 (Resolved): Create description detail page
- 02:33 PM Revision 16515bdf (cdm-dataportal): ref #8595 Add creation date for cloned source descriptions
- 02:32 PM Revision 9705e44e (cdm-dataportal): ref #8657 Avoid null in URL
- 02:07 PM Revision 424a2bee (cdmlib): ref #8469 use FeatureState in PolytomousKeyGenerator
- 02:00 PM Revision 1e16407a (cdm-dataportal): ref #8657 Use link icon for descriptions, taxa and specimens
- 01:47 PM Revision 875d5c3b (cdm-dataportal): ref #8657 Add taxon information to description detail page
- 01:23 PM Revision 7e99b1ac (cdm-dataportal): ref #8657 Remove $linkText parameter
- 01:19 PM Revision ea0ae3c7 (cdm-dataportal): ref #8657 Add descriptive data set information to description detail page
- 12:53 PM Revision fe3a5674 (cdm-dataportal): ref #8686 showing CdmLink sources - initial implementation, needs improvement
- 12:35 PM task #8468 (In Progress): Remove old InapplicableIf tables
- 12:21 PM feature request #8715: Make 'delete Taxonnode' a lonrunning task
- Deleting nodes can take some time and results in connection warnings or timeouts. This can be solved by running the d...
- 12:16 PM feature request #8715 (New): Make 'delete Taxonnode' a lonrunning task
- 11:49 AM Revision 51133f9a (cdmlib): ref #8469 filter non-character data
- 11:49 AM Revision 3f678339 (cdmlib): cleanup PolytomousKeyGenerator
- 10:46 AM Revision c0d26dcf (cdmlib): logging of canceled import
- 10:46 AM Revision b6f0e806 (cdmlib): ref #8673 extend initstrategy by cdmSource for ref #8686
- 10:32 AM Revision 16a4ba6a (cdmlib): minor
- 10:11 AM Revision e0fce64c (cdmlib): ref #8713 add test class for StructuredDescriptionAggregation
- 08:58 AM Revision 6d2d9cf5 (cdmlib): ref #8713 add test class for StructuredDescriptionAggregation
- 08:19 AM feature request #8713 (Closed): Improve structured descriptive data aggregation
- * Tests
* Remove empty categorical data creation
* use base class algorithm from #8679
* TBC - 02:26 AM Revision e434b808 (cdmlib): ref #8469 better handling of empty or null CategoricalData
11/20/2019
- 11:54 PM Revision 7e2ee71e (cdmlib): cleanup
- 11:54 PM Revision b73be607 (cdmlib): Some more monitoring during StructuredDescriptionAggregation
- 05:11 PM EDIT Platform Etablierung task #8689: Export Flora of Greece Bupleurum using Cdm2Cdm export
- I change Project and milestone as it is mostly data related.
- 03:37 PM EDIT Platform Etablierung task #8689 (Closed): Export Flora of Greece Bupleurum using Cdm2Cdm export
- The data looks complete and did not cause any errors when opening the taxa in the editor.
I consider this issue as... - 05:01 PM feature request #8281 (Closed): Doubtful flag for TaxonNode
- E+M data updated
~~~
UPDATE TaxonNode
Set unplaced = 0, doubtful = 1
WHERE unplaced = 1
~~~
also for _AUD - 05:00 PM feature request #8686 (In Progress): Support CdmLink sources in bibliography
- 04:59 PM Revision 6527c2f5 (cdm-dataportal): php-doc: return value
- 04:51 PM EDIT Platform Etablierung task #8711 (Closed): add additivity ontologies to the bupleurum database
- completed a dump is stored at edit-test:/root/cdm_test_bupleurum-2019-11-20-001.sql.bz2
- 01:25 PM EDIT Platform Etablierung task #8711 (Closed): add additivity ontologies to the bupleurum database
- the ontology can be downloaded from https://cybertaxonomy.eu/download/data/ontology/additivity/
the characters mus... - 04:24 PM feature request #8657 (Resolved): Order description element in portal according to CharacterTree
- 02:19 PM Revision c2138217 (taxeditor): german i18n for "Descriptive Data Set"
- 02:04 PM Revision e7b6e47a (cdmlib): remove possibility to define aggreaged distributions on description element level
- 02:04 PM Revision 65bc38bc (cdmlib): cleanup
- 02:04 PM Revision b11aa70a (cdmlib): cleanup
- 01:54 PM Revision 8eaf9b31 (cdmlib): abcd import: avoid potential NPE and emtpy authors
- 01:32 PM EDIT Platform Etablierung task #8712 (Closed): Kurs "Integrated Taxonomy" : prepare setup for workshop computers
* We will be using the edit-demo-2 server for the Kurs "Integrated Taxonomy"
* prepare database: - **DONE**
...- 12:58 PM task #8710: Decide if sub-area Preference and/or status order preference rule
- relevant code:
~~~
define('CDM_DISTRIBUTION_FILTER_DEFAULT', serialize(
array(
'filter_rules' => array(
'statu... - 12:57 PM task #8710: Decide if sub-area Preference and/or status order preference rule
- Probably needs discussion with users.
- 12:56 PM task #8710 (New): Decide if sub-area Preference and/or status order preference rule
- Currently they are switched of in default dataportals.
The setting can be found in the portal settings on the genera... - 12:47 PM Revision d3ac3ea7 (cdmlib): ref #8657 Extend property path for description init strategy
- 12:41 PM Revision b6fb9923 (cdmlib): Revert "ref #8657 Add (remote) service for ordered description elements by tree"
- This reverts commit 7af2c90016dd6215526a732c2d5d8b281c779d0f.
- 12:40 PM Revision a38c0718 (cdm-dataportal): ref #8657 Retain hierarchy information of description elements
- - remove web service for flat ordered list
- 12:10 PM feature request #8709 (New): Show last selected name in selection dialog of name in source
- mail Eckhard v. Raab-Straube:
was auch nett wäre: wenn sich der Editor bei der Auswahl des „name in source“ an die... - 12:05 PM feature request #8708 (Duplicate): Sort taxa in distribution editor same as in navigator
- mail Eckhard v. Raab-Straube:
Hallo,
zum Verbreitungseditor:
wenn man den Verbreitungseditor von einem höher... - 12:03 PM feature request #8707 (New): Use NAT Table for specimen search result
- The search result for the specimen search contains not all informations needed. Therefore it should be shown in a NAT...
- 11:45 AM feature request #8706 (Closed): taxeditor error report with timestamps
- Wie wäre es wenn wir dem Fehlerprotokoll mal einen Timestamp spendierten? Damit wäre es leichter den Fehler einem bes...
- 01:35 AM bug #8670 (Resolved): Unwanted distribution aggregation/display on 2 levels
- Dieses Ticket hat primär mit der Kartenanzeige und nicht mit der Aggregation zu tun. Bei der Kartenanzeige gibt es di...
11/19/2019
- 11:12 PM task #8671: Distribution in E+M (BM) on different levels
- AM
Die Regel klingt erstmal sinnig und einfach. Ich habe allerdings gerade mal eine DB Abfrage gestartet, wie viel... - 11:05 PM task #8671: Distribution in E+M (BM) on different levels
- ERS:
die Anzeige ist so korrekt. Wenn ein Unterareal vorhanden ist, soll das höhere Areal nicht angezeigt werden, ... - 05:16 PM task #8671 (In Progress): Distribution in E+M (BM) on different levels
- 05:38 PM bug #6629 (In Progress): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
- 05:31 PM feature request #8661 (Closed): "New DataSet" should ask for label and then open the dataset
- Works fine
- 05:28 PM feature request #8703 (Closed): Move TermSearch and Specimen(Import)Search to editor area of taxeditor
- Works fine. Thanks.
- 02:46 PM feature request #8703 (Resolved): Move TermSearch and Specimen(Import)Search to editor area of taxeditor
- Applied in changeset commit:taxeditor|0b7e08834f03d3e7ce2ea6c1f55c908a14d76758.
- 02:28 PM feature request #8703 (Closed): Move TermSearch and Specimen(Import)Search to editor area of taxeditor
- 05:27 PM bug #8705 (New): While specimen are loaded from provider the specimen list in specimen search should show "loading"
- to indicate that the search is not yet ready.
- 05:25 PM feature request #8665 (Feedback): Rename "New" to "New Tree" in Term Tree editors
- The problem in the ticket description is solved. Ticket can be closed.
Something I found when testing:
Can we u... - 05:19 PM Revision cd10bbf6 (cdmlib): ref #8517 handle protected fieldunit titlecache in DerivedUnitFacadeFieldUnitCacheStrategy and not in DerivedUnitFacadeCacheStrategy - fix compile error
- 05:18 PM bug #8670 (In Progress): Unwanted distribution aggregation/display on 2 levels
- 05:15 PM task #8672 (In Progress): Source handling during (distribution) aggregation
- 04:59 PM bug #7665: ConcurrentModificationException when closing Editor
- I think it happens still from time to time.
- 04:57 PM feature request #3836 (Closed): Implement modifiers and modifying text for Description Elements in TaxEditor
- I think I tested this in the context of #8226 and I think it worked.
- 04:54 PM EDIT Platform Etablierung task #8704 (In Progress): Test specimen import via BioCase and write documentation
- 04:52 PM EDIT Platform Etablierung task #8704 (Closed): Test specimen import via BioCase and write documentation
**TODO:**
* test specimen import via BioCase in taxeditor - **DONE and succesful**
* documentation **DONE**- 04:46 PM bug #8517 (Resolved): SpecimenOrObservation: data from protected titleCache missig in portal pages
- Sorry, I was not exact in my comment. I meant to move it from DerivedUnitFacadeCacheStrategy to DerivedUnitFacadeFiel...
- 04:42 PM Revision 10fda345 (cdmlib): ref #8517 handle protected fieldunit titlecache in DerivedUnitFacadeFieldUnitCacheStrategy and not in DerivedUnitFacadeCacheStrategy
- 04:42 PM Revision d0eb3b5b (cdmlib): cleanup
- 04:18 PM EDIT Platform Etablierung report #8556 (Closed): sifting of existing documentation
- 04:16 PM EDIT Platform Etablierung task #8578 (Closed): Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)
- This task in complete since we have now a good naming strategy which should be acceptable for almost anybody:
".... - 04:08 PM bug #8243: Cdm Cache uses a lot of disk space
- The description states that the increase of diskspace usage happened in seconds "*free disk space to 100% full in sec...
- 03:59 PM bug #8702: Remove Not null constraint for uuid in AUD tables
- query in information_schema to find such columns
~~~
SELECT *
FROM COLUMNS c
WHERE c.COLUMN_NAME = 'uuid' AND ... - 03:21 PM bug #8702: Remove Not null constraint for uuid in AUD tables
- I updated most production DBs manually already.
- 01:47 PM bug #8702 (Closed): Remove Not null constraint for uuid in AUD tables
- Some databases do have uuid NOT NULL contraints in some _AUD tables. In caryo_spp I found the following tables with t...
- 03:24 PM feature request #8694 (Closed): Specimen online import - Specimen Search: import button layout problem on linux KDE
- perfectly solved!
- 02:42 PM feature request #8694 (Resolved): Specimen online import - Specimen Search: import button layout problem on linux KDE
- 02:46 PM Revision 0b7e0883 (taxeditor): fix #8703 Open term search and specimen (import) search to editor area
- 02:13 PM Revision 56036a0c (taxeditor): ref #8694: layout issues in specimen import view
- 01:54 PM bug #7683: external links Audit table should allow uuid to be null
- We need an update script for all cases where AUD tables still have uuid NOT NULL: #8702
- 12:40 PM bug #8621: Do not save empty sources
- the same should be implemented for identifiers and others
- 12:32 PM bug #8701 (New): Toggle button in GBIF Specimen import does not toggle but is select all/none
- Toggle usually inverts the current selection. But the toggle button in the specimen import does either select all or ...
- 12:07 PM feature request #8700: Geofilter for DescriptiveDataSets should be used for taxon nodes AND specimens
- This needs to be configurable.
One issue to solve is that specimen data often use other area vocabularies then ta... - 11:27 AM feature request #8700 (New): Geofilter for DescriptiveDataSets should be used for taxon nodes AND specimens
- Currently only the taxon nodes are filtered with a TaxonNodeFilter
- 11:08 AM bug #8699 (New): Add menu item to accepted name to set as basionym
- mail Eckhard von Raab-Struabe:
wie kann man eigentlich im Freitext-Editor den akzeptierten Namen als Basionym der ... - 11:02 AM Revision ad8c4e9b (cdmlib): add ORCID iD as IdentifierType
- 10:30 AM feature request #8698: Sort order in status drop down of distribution editor
- Es sollte auf jeden Fall neben einer alphabetischen Sortierung auch eine geben, die sich an der Sortierung im Vokabul...
- 09:56 AM feature request #8698 (New): Sort order in status drop down of distribution editor
- Mail Eckhard von Raab-Straube:
Hallo,
eine weitere Sache:
kann ich die Reihenfolge der Statusangaben im Drop... - 01:11 AM Revision 973bd95e (cdmlib-apps): ref #8689 some updates to BupleurumExportActivator
- 01:10 AM Revision daf61d74 (cdmlib): ref #8689 fix issus in Cdm2Cdm import and add "removeImportSource" configuration
- 01:09 AM EDIT Platform Etablierung task #8689 (Resolved): Export Flora of Greece Bupleurum using Cdm2Cdm export
- This should be ready. Database is stored at cdm_test_bupleurum on edit-test. Please review.
- 12:33 AM Revision cb3810d6 (cdmlib-apps): ref #8689 some updates to BupleurumExportActivator
11/18/2019
- 10:07 PM bug #8696 (New): ehcahe discstore conflict when using the taxeditor with multiple users on the same system
- The diskstore must be created in user specific subfolders of the system temp folder.
We should consider creating a... - 06:33 PM feature request #8695 (New): Specimen online import - provider selection should remember last choise
- During the specimen online import the choice made in the provider selection always is reset to GBIF.
If the custom p... - 05:39 PM feature request #8694 (Closed): Specimen online import - Specimen Search: import button layout problem on linux KDE
- The import button seems to have a negative offset:
 - 05:36 PM feature request #8693 (New): Specimen online import - Specimen Search: show number of result items
- The count of specimens which are found by BioCase search should be shown in the Specimen Search View.
- 05:33 PM bug #8692 (New): Specimen online import is slow
- Importing ~200 Specimens via Import > Specimen > Specimen online took more than one hour for about 200 specimens
*... - 04:29 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
- Ok, this makes it much clearer. I will have a look if this can be implemented somehow.
- 03:50 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
- This configurator is used in a lot of places: specimen tree editor, specimen facet search (experimental), TaxonServic...
- 03:08 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
- Can you give some more information about context (specimen tree, matrix, dataportal, ...?) and other information requ...
- 04:02 PM bug #6036: Problems with deleting type names
- Is this still an open issue?
- 04:00 PM bug #6182: Emptying protolog URI does not work
- Protologues soon will be handled as OriginalSourceBase.externalLink, so not so important to fix
- 03:58 PM bug #6585: Combo menu items have orange font
- Is this still an open issue? Please also check on linux.
- 03:56 PM feature request #6760: specimen import configuration
- Is this still an open issue/duplicate/related to other tickets?
- 03:53 PM Revision eba2d1f7 (cdmlib): typo
- 03:35 PM feature request #6676: A user with READ access to taxa but WRITE access to factual data cannot update the factual view via the name editor
- I think this is something you are working on anyway.
- 03:33 PM feature request #6866: Improve specimen page
- Can you please relate this ticket with other tickets on this issue (specimen page)?
- 03:01 PM bug #6545 (Closed): [MASTER] Eclipse 4 bugs
- 02:52 PM bug #7512: Saving in Specimen Tree View creates unwanted scrolling on windows
- Can you please test if you can reproduce?
- 02:39 PM bug #8129 (Closed): Load images asynchronously in media details view
- 02:38 PM bug #8129: Load images asynchronously in media details view
- There is a follow up ticket #8691
- 02:36 PM bug #8691 (New): Remaining issues for asynchronous image loading
- see #8129 for open issues
- 02:33 PM bug #7911 (Worksforme): Changing areas in Distribution Editor yields to wrong column labels
- Is probably fixed.
- 02:31 PM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
- Please check what is still open
- 01:55 PM feature request #4511 (Rejected): Remove white space below EntitySelectionElement
- 01:39 PM feature request #4484: Evaluate publish flag for derivates in data portal
- There is probably a duplicate somewhere. Ticket has some importance for GBOL specimen.
- 12:41 PM Revision 29b21170 (cdmlib): add orcid and doi to identifier table
- 11:42 AM bug #1924: CIHORIEAE in-references in Footnotes
- found in old Email from 2010:
----
"als Diskussionsbeitrag schicke ich auch Dir noch unsere Richtschnur für Lit... - 10:40 AM feature request #8690 (New): DistributionTreeDTO and TreeNodeDTO implemented for description/distributionInfoFor/{uuid} webservice
- The responses of the `/portal/description/distributionInfoFor/{uuid}` web-service can get quite huge for aggregated d...
- 09:39 AM Revision f574c105 (cdmlib): revert some of the last changes
- 09:28 AM Revision 38969108 (cdmlib-apps): ref #8651 adapt EuroMedActivator to changes in DistributionAggregation/TransmissionEngine
- 09:27 AM Revision c49b3877 (cdmlib-apps): ref #8689 move Cdm2Cdm migration classes from cdm-pesi to cdmlib-io and add BupleurumExportActivator
- 09:19 AM Revision 25516d86 (cdmlib): ref #8689 revert unwanted commited files
- 09:18 AM Revision 77281e25 (cdmlib): ref #8689 Cdm2Cdm import from app-import to cdmlib-io
- 09:18 AM EDIT Platform Etablierung task #8689 (Closed): Export Flora of Greece Bupleurum using Cdm2Cdm export
- 09:16 AM Revision b37495b9 (cdmlib): ref #8679 move DistributionAggregation functionality to base class
- 09:14 AM Revision 9c0a55dd (cdmlib): cleanup
- 12:03 AM feature request #8472: Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- Close only if run on cichorieae (and others?) and the tmp code removing existing "Computed" markers is not needed any...
- 12:02 AM feature request #8472 (Resolved): Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- Should be fixed now.
11/16/2019
- 12:30 PM Revision c5fa3edd (cdm-dataportal): ref #8657 Add webservice call to cdm_api.module
- 12:32 AM Revision 2acab840 (cdmlib): ref #8679 improve monitoring
- 12:05 AM Revision a8496b29 (cdmlib): ref #8679 improve tests
11/15/2019
- 10:49 PM Revision 7800d0d0 (cdmlib): ref #8679 generic source handling with SourceModes
- 10:46 PM feature request #8688: Make OriginalSourceBase.cdmSource visible in TaxEditor
- Please decide who could be assignee. It would be nice to have it soon.
- 10:46 PM feature request #8688 (Closed): Make OriginalSourceBase.cdmSource visible in TaxEditor
- The field OriginalSourceBase.cdmSource is usually filled during aggregations (for now). Therefore it does not need to...
- 10:26 PM bug #8687 (New): Description page must show all DescriptionElement subclasses
- Currently it seems to show only Categorical and Quantitative Data. But one never knows what data will really come wit...
- 10:14 PM feature request #8686 (Closed): Support CdmLink sources in bibliography
- OriginalSourceBase has the new attribute cdmSource. In original source this can exist instead of citation. Currently ...
- 07:01 PM Revision c8424393 (cdmlib): cleanup
- 07:01 PM Revision 008371ae (cdmlib): ref #8679 move AggregationMode to ConfiguratorBase
- 06:07 PM Revision 7af2c900 (cdmlib): ref #8657 Add (remote) service for ordered description elements by tree
- 03:49 PM task #8679 (In Progress): Further unify description aggregation methods
- 03:30 PM feature request #8677: Add distribution aggregation to set subtree menu
- I updated the above list
- 03:09 PM feature request #8677: Add distribution aggregation to set subtree menu
- Katja Luther wrote:
> In #6352 the mentioned configuration is:
>
> * lowerRank - default: UnknownRank = 5c4d6755... - 02:31 PM feature request #8677: Add distribution aggregation to set subtree menu
- In #6352 the mentioned configuration is:
* lowerRank - default: UnknownRank = 5c4d6755-2cf6-44ca-9220-cccf8881700... - 03:00 PM Revision 4ced804f (cdmlib): Allow wild cards in term facet search
- 02:59 PM Revision c7dfbd8b (taxeditor): Do not search with empty search string in facet search
- 01:43 PM bug #8517: SpecimenOrObservation: data from protected titleCache missig in portal pages
- Andreas Müller wrote:
> This seems to work but handling the protected title cache of the **field** unit in the **der... - 01:31 PM bug #8681 (In Progress): Fix sect. parsing
- 01:04 PM Revision 9235bde5 (cdmlib): ref #8679 fix rerun DistributionAggregation with changed sources and deleted distributions
- 01:01 PM task #8651 (Closed): Unify description aggregation methods (distribution and structured descriptive data)
- 01:01 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > AK and PP as you have developed the orginal classes maybe... - 12:55 PM bug #8570 (Closed): PolytomousKeyNode.otherNode missing in REST service response
- Works as expected.
- 12:43 PM bug #8622 (Closed): Missing specimen Identifier leads to empty brackets in portal
- I tested the above mentioned pages and they look fine.
- 12:10 PM bug #8685 (Closed): Exception when calling DwC-A Export
- 12:09 PM bug #8685 (Closed): Exception when calling DwC-A Export
- mail:
Dear Andreas,
I enclose the error message I get from EDIT when I try to export the data in DwC-A format.
... - 10:55 AM Revision ed98102a (cdmlib-apps): ref #8651 adapt EuroMedActivator to changes in DistributionAggregation/TransmissionEngine
- 10:54 AM Revision 83146769 (cdmlib-apps): ref #8684 fixing compile errors in cdm-pesi
- 10:49 AM Revision fd9dc38f (cdmlib): cleanup and minor
- 10:49 AM Revision 18d9b6eb (cdmlib): ref #8684 fixing compile errors in cdmlib-persistence
- 10:48 AM Revision 7d451c51 (cdmlib): fix potential NPEs in ABCD import
- 10:21 AM bug #8684 (Resolved): ITaxonService.findTaxaByName misses initStrategy Parameter
- Applied in changeset commit:cdmlib|36a4a34fab6ca46f2d4b5c3707d55c2e2078e442.
- 10:21 AM task #8683 (Resolved): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache
- Applied in changeset commit:cdmlib|ca3e66ff9cd00985c5175e8a38ba8eab64063a13.
- 10:21 AM Revision 36a4a34f (cdmlib): fix #8684 adding initStratery to ITaxonService.findTaxaByName
- 09:57 AM Revision ca3e66ff (cdmlib): fix #8683 TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache
- 09:49 AM Revision c4fb8d80 (cdmlib): fixing scary string compare bug
- 09:34 AM Revision e23faa0a (taxeditor): Remove experimental status for additivity related UI parts
- 09:28 AM Revision 3a88b57a (taxeditor): ref #8656 i18n for loading label
- 09:26 AM Revision 390ef5ac (taxeditor): ref #8656 Update label if matrix loadiung failed
- 09:06 AM feature request #8661 (Resolved): "New DataSet" should ask for label and then open the dataset
- Applied in changeset commit:taxeditor|a61d053e67fceb35c6cfb0065d08651c09b002e6.
- 09:05 AM Revision a61d053e (taxeditor): fix #8661 "New DataSet" should ask for label and then open the dataset
- 08:29 AM feature request #8665 (Resolved): Rename "New" to "New Tree" in Term Tree editors
- Applied in changeset commit:taxeditor|c127cb13020855f630fc93b36842e45d063997e0.
- 08:29 AM Revision c127cb13 (taxeditor): fix #8665 Rename menu item label
11/14/2019
- 05:16 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
- Andreas Müller wrote:
> AK and PP as you have developed the orginal classes maybe you want to have a look to the n... - 04:59 PM feature request #8673 (Closed): Allow OriginalSource to link to other CDM objects
- works as expected
- 04:57 PM Revision 524c5307 (taxeditor): Show DescriptionType message instead of toString()
- 04:52 PM bug #8676 (Closed): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- 04:49 PM bug #8684 (Closed): ITaxonService.findTaxaByName misses initStrategy Parameter
- ITaxonService.findTaxaByName misses initStrategy Parameter causing unsolvable LIEs when using via the portal service
... - 04:46 PM task #8683 (Closed): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache
- 04:42 PM bug #5048 (Closed): cdm-server causes unusual high native memory consumption for jvm
- last remaining subtask copied to #8682. ticket can now be closed.
- 04:40 PM bug #8682 (Closed): cdm-server debian packages configured for jemalloc
- in order to save native memory it is highly recommended to run the cdm-server with `jemalloc` instead of the system ...
- 04:32 PM task #8674 (Closed): configure cdm-server docker image to run with jemalloc
- everything ok!
- 03:49 PM Revision 3411af18 (cdm-server): Merge branch 'release/5.11.0' into develop
- 03:48 PM Revision 38d0d183 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 03:48 PM Revision 57b234aa (cdm-server): updating poms for branch'release/5.11.0' with non-snapshot versions
- 03:47 PM Revision f90eb6c2 (cdm-webapp): Merge branch 'release/5.11.0' into develop
- 03:47 PM Revision 11deb93a (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 03:47 PM Revision 66a333e4 (cdm-webapp): updating poms for branch'release/5.11.0' with non-snapshot versions
- 03:47 PM Revision ffbc80d4 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.11.0
- 03:47 PM Revision cf634b20 (cdm-dataportal): Merge branch 'release/5.11.0' into develop
- 03:46 PM Revision c0b05cbc (cdm-dataportal): updating poms for branch'release/5.11.0' with non-snapshot versions
- 03:46 PM Revision cb5a98c5 (cdm-dataportal): release-preparation: production level css
- 03:46 PM Revision 56b76499 (taxeditor): Merge branch 'release/5.11.0' into develop
- 03:46 PM Revision 62c5bf9d (taxeditor): Merge branch 'release/5.11.0'
- 03:45 PM Revision e5e80f40 (cdm-vaadin): Merge branch 'release/5.11.0' into develop
- 03:45 PM Revision f302dddc (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 03:41 PM Revision 7649bbba (cdm-vaadin): updating poms for branch'release/5.11.0' with non-snapshot versions
- 03:41 PM Revision 0ba1a84a (cdm-vaadin): jenkins bumping cdmlib.version to 5.11.0
- 03:40 PM Revision 0fb9a6f8 (cdmlib): Updating develop poms back to pre merge state
- 03:40 PM Revision 34fc89c8 (cdmlib): Merge branch 'master' into develop
- 03:40 PM Revision 7488b0d6 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 03:40 PM Revision 458c738d (cdmlib): Merge branch 'release/5.11.0'
- 03:23 PM Revision af102b7d (cdmlib): updating poms for branch'release/5.11.0' with non-snapshot versions
- 02:34 PM bug #8681 (In Progress): Fix sect. parsing
- See open issue in #8253 . Maybe it is a more general problem.
"this is in Rank.java and the map idInVocMap is fil... - 02:32 PM feature request #8253 (Closed): Authors for genus autonyms
- I found the place. And probably fixed it but will not commit before release as it needs to be further tested.
Crea... - 02:19 PM feature request #8253: Authors for genus autonyms
- Andreas Müller wrote:
> Can you give some more information where to find these things? Especially "map of the idInV... - 02:14 PM feature request #8253: Authors for genus autonyms
- Can you give some more information where to find these things? Especially "map of the idInVocMap "
- 02:06 PM feature request #8253 (Feedback): Authors for genus autonyms
- 01:40 PM feature request #8253: Authors for genus autonyms
- I found the cause of the parsing problem:
when searching for the rank by Rank.getRankByIdInVoc(infraGenRankMarker)... - 02:26 PM Revision dd0fb528 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.11.0-SNAPSHOT
- 02:26 PM Revision c4b15330 (cdm-webapp): updating poms for 5.12.0-SNAPSHOT development
- 02:26 PM Revision 281fde70 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.12.0-SNAPSHOT
- 02:25 PM Revision 451335ef (taxeditor): Updated version in pom / project files to taxeditor version : 5.12.0-SNAPSHOT and cdmlib version : 5.12.0-SNAPSHOT
- 02:25 PM Revision fde64bdb (taxeditor): Updated version in pom / project files to taxeditor version : 5.11.0 and cdmlib version : 5.11.0
- 02:23 PM Revision e2ef05a4 (cdm-server): updating poms for 5.12.0-SNAPSHOT development
- 02:23 PM Revision b48c4700 (cdm-vaadin): jenkins bumping cdmlib.version to 5.11.0-SNAPSHOT
- 02:23 PM Revision a12486b5 (cdm-dataportal): updating poms for 5.12.0-SNAPSHOT development
- 02:23 PM Revision fd8f8d26 (cdm-vaadin): updating poms for 5.12.0-SNAPSHOT development
- 02:23 PM Revision 3f458b2b (cdm-vaadin): updating poms for 5.11.0 branch with snapshot versions
- 02:23 PM Revision 82fd6211 (cdm-vaadin): jenkins bumping cdmlib.version to 5.12.0-SNAPSHOT
- 02:21 PM Revision b0cbc440 (cdmlib): updating poms for 5.12.0-SNAPSHOT development
- 02:00 PM Revision f31fdd6b (cdm-dataportal): ref #8673 Fix description title display on taxon page
- 01:15 PM bug #8631 (Closed): ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- 01:00 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- It looks ok in KDE!
The ticket can be closed. - 12:25 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Andreas Müller wrote:
> It look ok now. Only change I suggest: let the "Biocase provider for DNA" dropdown start at ... - 09:55 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- It look ok now. Only change I suggest: let the "Biocase provider for DNA" dropdown start at the same horizontal posit...
- 01:00 PM feature request #8667 (Closed): Make Person.orcid editable in TaxEditor
- 12:56 PM feature request #8667 (Resolved): Make Person.orcid editable in TaxEditor
- this is fixed
- 12:54 PM Revision 64090e78 (cdmlib): cleanup
- 12:16 PM Revision 4c0d4268 (cdmlib): cleanup
- 12:15 PM Revision 9449fa3d (cdmlib): ref #8651 useClearExistingDistribution = false as default
- 11:56 AM Revision 91006ade (cdmlib): ref #8651 cleanup DistributionAggregation and remove old computed markers and avoid not saving of descriptions due to readonly
- 11:54 AM Revision 18683dc6 (taxeditor): ref #8631: layout issues
- 11:37 AM Revision f6a63f8b (cdmlib): ref #8673 CdmLinkSourceBeanProsessor disabled and init strategy for cdmSource.target
- 10:57 AM Revision dcc025b4 (taxeditor): use preferencePredicate.EditMapServiceAccessPoint in featureDistribution detailsview
- 10:38 AM Revision 2f1bb433 (taxeditor): cleanup
- 10:07 AM Revision e6287d4a (cdmlib): avoid NPE in dataholder
- 09:59 AM Revision d6dc2032 (cdmlib): smaller issues in abcd import
- 09:55 AM Revision 5e751d05 (cdmlib): minor
- 09:51 AM Revision b0e71e93 (taxeditor): avoid exception when export config does not have userfriendlyIOName
- 09:47 AM Revision 44434863 (cdmlib): add userFriendlyIOName to Dwca Configurator
- 07:54 AM Revision 4e506608 (cdm-dataportal): ref #8673 Fix description title display on taxon page
- 07:46 AM Revision 79e61daa (cdm-dataportal): ref #8673 Adapt more specific description type
- 12:11 AM Revision c1ede4f8 (cdmlib): ref #8651 implement reuse of distributions in DistributionAggregation
11/13/2019
- 10:50 PM Revision 85884141 (cdmlib): ref #8651 further cleanup DistributionAggregation
- 09:55 PM Revision 27dd2015 (cdmlib): fix compile error
- 09:48 PM Revision 0cfec87b (cdmlib): ref #8651 further cleanup DistributionAggregation
- 09:47 PM Revision bd522a58 (cdmlib): cleanup
- 05:26 PM Revision ec44caf9 (cdmlib): ref #8651 cleanup DistributionAggregation
- 05:23 PM Revision 7926167f (cdmlib): cleanup
- 05:21 PM Revision 778d2800 (cdmlib): cleanup ProgressMonitor
- 05:16 PM Revision 2412e7b6 (cdmlib): ref #8673 CdmLinkSourceBeanProsessor proper null handling
- 05:12 PM Revision f5c38c85 (taxeditor): fix possible NPE
- 05:06 PM Revision 3fa32caf (taxeditor): ref #8651 Adapt to finer grained aggregation description type
- 04:31 PM Revision 628c6976 (cdmlib): ref #8673 CdmLinkSourceBeanProsessor to serialize CdmLinkSource as TypedEntityReference
- 03:20 PM feature request #8673: Allow OriginalSource to link to other CDM objects
- CdmLinkSourceBeanProsessor implemented but cannot test since i can't find data with CdmLinkSource
@Patrick: please... - 12:50 PM feature request #8673: Allow OriginalSource to link to other CDM objects
- We still need to check if the empty constructor of CdmLinkSource also could be protected. Patrick could you do this?
- 03:19 PM Revision 019036d1 (cdmlib): ref #8673 CdmLinkSourceBeanProsessor to serialize CdmLinkSource as TypedEntityReference
- 03:07 PM Revision a7df73f0 (cdmlib): ref #8651 cast failing in LINUX
- 02:59 PM Revision 2a00d0b3 (cdmlib): cleanup
- 02:59 PM Revision f24fb983 (cdmlib): ref #8651 fix missing uuid
- 02:50 PM Revision a914faf1 (cdmlib): ref #8651 Introduce new description type "Aggregated Structured Description"
- 02:48 PM Revision 8a7e4037 (cdmlib): cleanup
- 02:37 PM feature request #8680 (New): Unify long running tasks framework
- Long running task are currently implemented at many places and for multiple purposes.
Some things we could do:
... - 02:14 PM Revision 8e1870d6 (cdmlib): cleanup
- 02:09 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
- Andreas Müller wrote:
>
> Before closing we should delete the redundant methods from DescriptiveDataSetService. ... - 01:06 PM task #8651 (Resolved): Unify description aggregation methods (distribution and structured descriptive data)
- We do now have a common base class and also the LongRunningTaskService used only 1 method (with config as parameter)....
- 01:48 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- I made some changes myself. Looks fine on Linux. Please test on windows.
- 12:35 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- @Patrick could you have another look, whether it looks better now. It is difficult to check for me because with windo...
- 01:47 PM Revision d36d2eb8 (taxeditor): ref #8631 Fixed layout + merged constructors
- 01:27 PM Revision c68519c0 (cdmlib): ref #8651 Remove aggregation methods(now in DescriptionAggregationBase)
- 01:03 PM feature request #8253: Authors for genus autonyms
- Katja Luther wrote:
> Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes... - 01:01 PM task #8679 (Closed): Further unify description aggregation methods
- Common base classes already exist. Further work might be:
* ~~use the same calls for "aggregateWithinTaxon", "aggr... - 12:59 PM feature request #8470 (Closed): Handle username constraints in user and group editing
- Seems to work as expected
- 12:53 PM feature request #7019 (Closed): sort import menu
- Works as expected.
- 09:14 AM feature request #7019 (Resolved): sort import menu
- 12:27 PM task #8678 (New): Update Fauna Europaea Master Db for common names with area = North America and language = Dutch (Middle)
- Some common names had "English-United States" as language and where imported with language = English and Area = North...
- 12:22 PM Revision 67ab92f3 (cdm-dataportal): ref #8673 Adapt portal to CdmSource eager loading
- 11:32 AM Revision f4c1a988 (cdmlib): add default priority to distribution aggregation webservice
- 11:32 AM Revision d1292203 (cdmlib): ref #8651 always add description type to aggregated descriptions
- 11:32 AM Revision 7841cf62 (cdmlib): cleanup
- 11:17 AM Revision 453261d0 (cdmlib): ref #8673 Extend property path for CdmSources
- 11:15 AM Revision 1e2fd81a (cdmlib): ref #8673 make cdmSource Eager to avoid LIEs
- 10:42 AM Revision 065e965b (cdm-dataportal): ref #8673 Adapt portal to CdmSource for aggregation clones
- 10:30 AM Revision c32e83c4 (cdmlib): ref #8673 Extend property path for CdmSources
- 08:37 AM feature request #6337 (Rejected): simple web ui to trigger the transmission engine distribution
- I also agree
- 08:36 AM feature request #6337: simple web ui to trigger the transmission engine distribution
- Norbert wrote:
I agree that TaxEditor is the preferred place to run aggregation, see no need for an implementation... - 08:35 AM Revision 4eedd13b (taxeditor): ref #8651 Adapt to cdmlib aggregation configuration
11/12/2019
- 11:46 PM Revision 67146e56 (cdmlib): cleanup
- 11:46 PM Revision 58ea183c (cdmlib): ref #8651 smaller changes to distribution accumulation webservice
- 11:32 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- Shouldn't we rename the parameter to authorshipCache in the service layer methods. Because that is what it is.
- 09:05 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- no worries, it was fixed already when I created the ticket. I only had no time to commit and push.
- 09:03 PM bug #8676 (Resolved): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- Applied in changeset commit:cdmlib|83c72818d2e637f56f3e956c99cb0e6c1e508cbd.
- 06:10 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- Why is this in 5.11. Please fix immediately if you want to keep it here. Otherwise move.
- 05:37 PM bug #8676 (Closed): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
- The find method corresponding to `countTaxaByName(Class <? extends TaxonBase> clazz, String uninomial, String infrag...
- 11:08 PM Revision 9d192006 (cdmlib): ref #8651 register UUID lists for distribution accumulation webservice
- 11:08 PM Revision 39c4cced (cdmlib): cleanup
- 09:03 PM Revision 83c72818 (cdmlib): fix #8676 adding authorship parameter to countTaxaByName
- 09:03 PM Revision f31f3e26 (cdmlib): updating jetty microversion in launcher
- 06:36 PM feature request #6337: simple web ui to trigger the transmission engine distribution
- Andreas (and maybe Norbert, Eckhard). Can you please decide if this is still needed at all. I guess if a TaxEditor UI...
- 06:28 PM feature request #6352: Add Transmission Engine trigger to Admin menu
- This is more or less a duplicate for #8677. There it is defined as called in "Set subtree" menu.
Probably we need di... - 06:16 PM task #8651 (In Progress): Unify description aggregation methods (distribution and structured descriptive data)
- This is basically done but there are mutliple open tasks
- 06:14 PM feature request #5176 (Resolved): TransmissionEngineDistribution can run on selected taxa
- This should be fixed.
- 06:13 PM bug #4134 (Resolved): Transmissionengine Distribution seems to miss distributions for higher Taxa
- I set to resolved as I guess it is fixed. But needs to be reviewed.
- 06:09 PM feature request #8470: Handle username constraints in user and group editing
- I guess this is for review
- 11:37 AM feature request #8470: Handle username constraints in user and group editing
- Andreas Müller wrote:
> Also in the "New" dialog there is a message "Input cannot be empty". Also here further infor... - 11:36 AM feature request #8470 (Resolved): Handle username constraints in user and group editing
- Andreas Müller wrote:
> Can you please leave a message how exactly you changed the issue discussed in note 7 and 8. ... - 10:53 AM feature request #8470: Handle username constraints in user and group editing
- Also in the "New" dialog there is a message "Input cannot be empty". Also here further information on the allowed cha...
- 10:52 AM feature request #8470: Handle username constraints in user and group editing
- Can you please leave a message how exactly you changed the issue discussed in note 7 and 8. The discussion was not en...
- 10:49 AM feature request #8470: Handle username constraints in user and group editing
- Andreas Müller wrote:
> Now when creating a new user the bulkeditor is dirty. When NOT saving the bulk editor and af... - 10:47 AM feature request #8470 (Feedback): Handle username constraints in user and group editing
- Now when creating a new user the bulkeditor is dirty. When NOT saving the bulk editor and after reopening the bulk ed...
- 06:08 PM feature request #8677 (Closed): Add distribution aggregation to set subtree menu
- There is a new long running task "DisributionAggregation" which runs on a TaxonNodeFilter (#8651 and others). It shou...
- 04:48 PM Revision c655943d (cdmlib): ref #8651 factory method and base constructor for aggregation configurators
- 03:22 PM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)
- Die Umfrage ist abgeschlossen und ausgewertet (attachment:Taxeditor-Terms-Poll-2019.pdf):
-----
Hallo zusammen,
... - 03:21 PM Revision a51edae3 (cdmlib): ref #8651 unify invocation call in LongRunninTasksService
- 03:00 PM Revision 140a83b3 (taxeditor): ref #8470: change null to empty in message
- 02:54 PM Revision 768595a5 (taxeditor): ref #8350: avoid IllegalArgumentException
- 02:51 PM Revision e116bd58 (taxeditor): fix NPE in StoreUtil
- 02:37 PM Revision a2dd1526 (cdmlib): ref #8651 use explicit conifguration for structured descriptions
- 02:27 PM Revision 68c9d8e4 (taxeditor): Rename menu entry for DDS navigator
- 01:45 PM Revision 99a9422e (taxeditor): ref #8667: minor
- 01:35 PM Revision a02567b7 (taxeditor): layout issues for create taxonnode wizard
- 01:35 PM Revision 95622e27 (taxeditor): ref #8470: user/group creation string localization
- 01:35 PM Revision df2a4c41 (taxeditor): ref #8667: l10n for orcid element
- 01:35 PM Revision 755b2883 (taxeditor): ref #8667: smaller layout issues for orcids
- 01:35 PM Revision 905fdec1 (taxeditor): ref #8631: same layout for unit id and nomenclatural code combobox
- 01:35 PM Revision 5dd36b69 (taxeditor): ref #8470: user/group creation continue
- 01:03 PM Revision 7f601c27 (taxeditor): ref #8651 Use unified aggregation class for matrix aggregation
- 01:02 PM Revision 5f993e31 (taxeditor): ref #7019 Fix menu sort order of navigation context menu
- 12:04 PM bug #8675: Make Ranks sortable by natural order
- Best place might be the Names-Ranks preference page
- 12:03 PM bug #8675 (New): Make Ranks sortable by natural order
- This was already available in past but seems being lost in current version.
- 11:42 AM bug #8628 (Closed): Add ORCID as person identifier
- this message is easier to understand how the identifier should look like
- 09:40 AM bug #8628 (Resolved): Add ORCID as person identifier
- I adapted the error messages a bit. Can you please review again?
- 11:40 AM bug #8664 (Closed): SQLGrammarException when opening Specimen selection
- I tested again and it seems to work now.
- 11:34 AM feature request #8253 (Resolved): Authors for genus autonyms
- By the way the parser for me now also works with names like "Achnanthes Bory sect. Achnanthes". So can you please che...
- 11:30 AM feature request #8253: Authors for genus autonyms
- Katja Luther wrote:
> Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes... - 11:19 AM Revision 46278434 (cdmlib): ref #8651, #8467 Use unified aggregation class for matrix aggregation
- - Link specimen descriptions as sources as direct CDM entities
- 11:19 AM Revision 5394c18a (cdmlib): Fix potential class cast exception
- 10:56 AM Revision 6d1c29e8 (taxeditor): ref #8470: user/group editor should not be dirty after creating new entity
- 10:38 AM feature request #7019: sort import menu
- Kannst du dann noch umbenennen: ABCD => ABCD file; Excel Normal Explicit Taxa => Exel Normal Explicit; RIS Referenze...
- 10:37 AM feature request #7019: sort import menu
- Andreas Müller wrote:
> It seems to depend on experimental being switcht on or not. In later case the old menu appea... - 10:24 AM feature request #7019: sort import menu
- It seems to depend on experimental being switcht on or not. In later case the old menu appears.
- 10:02 AM feature request #7019: sort import menu
- I still get the old menu no matter what I do. I deleted the .metadata folder, I downloaded a completely new TaxEditor...
- 09:39 AM Revision e82373d1 (cdmlib): ref #8628 Improve error messages for ORCID parsing
- 09:26 AM Revision 00fafe2a (cdmlib): ref #8651 remove MarkerType.Computed where possible
- 09:25 AM Revision c597851f (cdmlib): cleanup
- 08:34 AM Revision 291ea3f3 (cdmlib): ref #8651 fix failing tests due to order of aggregation
- 01:51 AM Revision 3a97a754 (cdmlib): ref #8651 remove some comments and handle AggregationMode correctly
- 01:40 AM Revision d062baaf (cdmlib): ref #8651 fix failing tests due to use of old description markers
- 01:39 AM Revision 7c03912b (cdmlib): ref #8651 merge area and rank aggregation for DistributionAggregation
- 12:46 AM Revision 406d4d96 (cdmlib): fix max rank in DwcaExportController
- 12:45 AM Revision 3b1c92ca (cdmlib): ref #5176 add all taxon node filter attributes to distribution aggregation webservice
- 12:44 AM Revision 5c148b4e (cdmlib): ref #8651 more specific description type for DistributionAggregation
11/11/2019
- 11:48 PM Revision 3807d9cb (cdmlib): cleanup
- 11:46 PM Revision 6be3adaa (cdmlib): ref #5176, ref #8651 make DistributionAggregation treeIndex based and use TaxonNodeFilter
- 11:38 PM feature request #4366: Transmissionengine Distribution: implement rules for source references
- From AG:
The original BM Transmission Engine was handled references ONLY for the Med_Check_List 2 use cases. For E... - 11:38 PM task #8674: configure cdm-server docker image to run with jemalloc
- the new docker image is now based on ubuntu:bionic since jemalloc in alpine Linux fails with segfault.
Therefore I ... - 11:33 PM task #8674 (Resolved): configure cdm-server docker image to run with jemalloc
- Applied in changeset commit:cdm-server|a9e82e311a06d536699eefabdf13b89fbb8e6220.
- 02:41 PM task #8674 (Closed): configure cdm-server docker image to run with jemalloc
- 11:33 PM Revision a9e82e31 (cdm-server): fix #8674 docker image based on ubuntu:bionic with openjdk8 and jemalloc
- 11:31 PM Revision 3fe716be (cdm-server): gitignore
- 02:04 PM feature request #8667: Make Person.orcid editable in TaxEditor
- Please add space after "ORCID won't be saved!" , before the real error message.
- 02:01 PM feature request #8667 (Feedback): Make Person.orcid editable in TaxEditor
- The error message does not always have enough space
 - 12:39 PM feature request #8667 (Resolved): Make Person.orcid editable in TaxEditor
- The field is added to the editor. please review.
- 01:58 PM feature request #8673: Allow OriginalSource to link to other CDM objects
- Can you please review?
Please also have in mind that webservices should not deliver the full cdmobject and maybe e... - 01:52 PM bug #8631 (Feedback): ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- So the layout still needs some update for linux, I guess.
- 11:08 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- This is how it looks for me. Started the editor from the IDE.
 - 12:59 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- configuring the test server to use `jemalloc` instead of `malloc?` drastically reduced the native memory overhead:
... - 12:50 PM bug #8628: Add ORCID as person identifier
- This is difficult because multiple formats are possible (with http, https, only orcid.org or completely missing all p...
- 11:06 AM bug #8628 (Feedback): Add ORCID as person identifier
- Could you add an example in the exception message to show how it should look like. And that an x at the end is possib...
- 12:37 PM feature request #8253 (Feedback): Authors for genus autonyms
- Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes sect. Achnanthes Bory,...
- 12:32 PM feature request #8470: Handle username constraints in user and group editing
- please review
- 12:12 PM Revision c1217ecf (cdmlib): ref #8673 Fix NPE for OriginalSourceBase.getCdmSource
- 11:14 AM feature request #7019: sort import menu
- Tried this morning. Seems to work. Please download and try again.
- 11:02 AM Revision 39913f14 (taxeditor): Add constant for term search to default perspective
- 11:02 AM Revision 11761cac (taxeditor): Externalize fragment IDs
- 10:49 AM Revision a704339f (taxeditor): ref #8667: add orcid to person detail element - continue
- 10:18 AM Revision b2e5f9bf (taxeditor): ref #8667: add orcid to person detail element
- 09:47 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
- mail Inan Erdogan:
ich glaube das passiert bei mir fast ausschliesslich, wenn ich entweder im Hauptansichtsfeld de... - 09:37 AM bug #4134: Transmissionengine Distribution seems to miss distributions for higher Taxa
- AM:
Ja, ich habe dann später auch festgestellt, dass die Aggregation bis zum Tribus in dem Fall gewünscht war. Dah... - 09:28 AM bug #4134 (In Progress): Transmissionengine Distribution seems to miss distributions for higher Taxa
- NK:
Vor eine Neuaggregation können und sollten die Neuberechnungen auf Subtribus- und Tribus-Ebene gelöscht werden... - 09:37 AM Revision cb45e05b (taxeditor): ref #8631: layout issues in abcd import wizard page and refresh of navigator after abcd import
11/10/2019
- 12:30 PM Revision c8c05549 (cdmlib): cleanup
- 12:30 PM Revision 186cf7ed (cdmlib): ref #8673 add Cascade.Delete and orphanRemoval and handle getter/setter on target directly
11/09/2019
- 06:37 PM Revision 3aa37a25 (cdmlib): ref #8651 remove unnecessary dependency DistributionAggregation in DescriptionElementListController
- 06:14 PM Revision d68e1b58 (cdmlib): ref #8651 try to fix failing repository dependency injection in DescriptionListController (2nd try)
- 05:55 PM Revision ade857dd (cdm-vaadin): fix #8673 update Vaadin test DB to CdmLinkSource changes
- 05:54 PM Revision 5e7c747f (taxeditor): fix #8673 update TaxEditor test DB to CdmLinkSource changes
- 05:52 PM Revision 8049524f (cdmlib): ref #8651 try to fix failing repository dependency injection in DescriptionListController
- 05:51 PM Revision b45755b5 (cdmlib): cleanup
- 05:43 PM feature request #8673 (Resolved): Allow OriginalSource to link to other CDM objects
- Applied in changeset commit:cdmlib|93ad7e545dc77e63b68e434c62c8560a68bb9dfb.
- 12:33 PM feature request #8673 (Closed): Allow OriginalSource to link to other CDM objects
- Currently links are only available to Reference and (external) URIs. However, especially for adding sources to aggreg...
- 05:41 PM Revision 93ad7e54 (cdmlib): fix #8673 Add CdmLinkSource to OriginalSourceBase
- 01:14 PM Revision 8bbb7d89 (cdmlib): ref #8651 try to fix compile error in DescriptionListController
- 12:42 PM Revision a7e34ddd (cdmlib): cleanup
- 12:41 PM Revision 3bab771f (cdmlib): ref #8651 remove @Service annotation from DistributionAggregation and moving some functionality to base class + explicit Configurator for DistributionAggregation
- 12:23 PM feature request #4366 (Feedback): Transmissionengine Distribution: implement rules for source references
- As this ticket is E+M specific, discusses only specific cases and neglects also to mention discussion from #2625 (att...
- 11:40 AM feature request #4366: Transmissionengine Distribution: implement rules for source references
- Andreas Kohlbecker wrote:
> Replying to [[comment1|a.kohlbecker]]:
>
> > Hallo Andreas,
>
> >
>
> > dem l... - 12:17 PM task #8672 (In Progress): Source handling during (distribution) aggregation
- There are different possibilities to handle sources during aggregation of factual (distribution and structured descri...
- 11:24 AM bug #8670: Unwanted distribution aggregation/display on 2 levels
- > NK:
> Frage: wenn in allen Fällen auf Level 3 aggregiert werden muss (**ist das so?**), lässt sich dann nicht weni... - 12:29 AM bug #8670: Unwanted distribution aggregation/display on 2 levels
- It needs to be decided if this is an aggregation issue or a display (output) issue.
- 12:29 AM bug #8670 (Closed): Unwanted distribution aggregation/display on 2 levels
- NK:
Der Schritt der Aggregation auf der Ebene des primären Taxons von level 3 auf level 4 führt:
(a) zu einer un... - 10:54 AM task #8671: Distribution in E+M (BM) on different levels
- SQL to find such cases in E+M BM:
~~~
SELECT occ.SummaryStatus, n.FullNameCache, pt.PTRefFk, n.NameCache
FROM em... - 10:08 AM task #8671: Distribution in E+M (BM) on different levels
- Eine Lösung für dieses Problem könnte sein, dass man nicht (wie in #8670) die Areale aufwärts aggregiert sondern abwä...
- 09:28 AM task #8671 (Rejected): Distribution in E+M (BM) on different levels
- We may need to solve the below problem in Euro+Med (Berlin Model) with new functionality in CDM.
=====
AM:
I...
11/08/2019
- 11:43 PM bug #4134 (Feedback): Transmissionengine Distribution seems to miss distributions for higher Taxa
- Das ist für mich nicht logisch. Auch wenn die Aggregation über die Areale auch auf höheren Rangstufen erfolgte (was i...
- 10:12 PM bug #8669 (New): Permission problems when caches are updated without permission
- The problem is described in #8650 . There a person title had changed and therefore the team titlecache was updated du...
- 10:08 PM bug #8650: PermissionDenied Exception for Teams when editing distributions
- I remove from milestone as this is a pure data related fix.
We need a new ticket for handling the cache update pro... - 09:05 PM Revision ed09c048 (cdmlib): cleanup
- 09:05 PM Revision 535525fc (cdmlib): fix #8628 update cdm.map.ser to Person.orcid
- 08:58 PM feature request #8668 (New): Show Person.orcid in dataportal
- ... but for this we first need an Person or Agent page I guess. So this ticket is blocked.
See https://support.orc... - 08:56 PM feature request #8667 (Closed): Make Person.orcid editable in TaxEditor
- this should be done similar to DOI in Reference class
- 08:54 PM bug #8628: Add ORCID as person identifier
- This should be fixed now. Please review.
- 08:47 PM bug #8628 (Resolved): Add ORCID as person identifier
- Applied in changeset commit:cdmlib|6e1b0ff9bdf5c8e20f1df4e5542aa44554252a81.
- 08:51 PM Revision 9d0322b2 (cdm-vaadin): fix #8628 update Vaadin test DB to Person.orcid
- 08:50 PM Revision 58a6ce02 (taxeditor): fix #8628 update TaxEditor test DB to Person.orcid
- 08:47 PM Revision 4fb5b361 (cdmlib): cleanup
- 08:46 PM Revision 6e1b0ff9 (cdmlib): fix #8628 add ORCID as person identifier
- 08:43 PM Revision 6119597f (cdmlib): cleanup
- 04:52 PM bug #8666 (New): Login fails if classification can not be loaded
- If the sortindex of a root taxon is destroyed the classification can not be loaded.
Loading classification is curr... - 03:20 PM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors
- in context menu
- 03:14 PM feature request #8253: Authors for genus autonyms
- Very strange, it seems to work with Achnanthes Bory subg. Achnanthes but not with Achnanthes Bory sect. Achnanthes. T...
- 02:16 PM feature request #8253: Authors for genus autonyms
- Hm, strange, it still doesn't seem to work. Though there is a test with the exact same string "" in NonViralNameParse...
- 01:26 PM feature request #8253: Authors for genus autonyms
- should be fixed now
- 01:24 PM feature request #8253 (Resolved): Authors for genus autonyms
- Applied in changeset commit:cdmlib|6ef5a0b16df87d2bd76e8e14cc714cd845f17366.
- 12:14 PM feature request #8253: Authors for genus autonyms
- OK, the problem is I used parseFullName in NonViralNameParserImplTest. But the editor use parseReferencedName I guess...
- 10:49 AM feature request #8253 (Feedback): Authors for genus autonyms
- when entering Achnanthes Bory sect. Achnanthes in NameEditor the rank and epithets are not parsed correctly.
The e... - 03:06 PM bug #8429: Rename DeterminationEvent_Reference.setOfReferences_id
- Andreas Müller wrote:
> Please review.
- 03:05 PM feature request #8441: Add FeatureState class
- Can you still remove? Did you try to remove things? So no orphan-removal issues?
- 03:04 PM feature request #8398 (Closed): Add nomenclatural code edition to ruleConsidered
- Andreas Kohlbecker wrote:
> excellently implemented, thanks a lot!
>
> I extended the protected constructors in `... - 02:44 PM feature request #7019 (Feedback): sort import menu
- I can't see any difference tried with update and install new version of current nightly.
 - 12:27 PM feature request #7019 (Resolved): sort import menu
- Applied in changeset commit:taxeditor|708b6366b5bba1a1669243d3f7145a1967258e04.
- 11:42 AM feature request #7019: sort import menu
- We decided to use "Specimen online"
- 11:07 AM feature request #7019: sort import menu
- Andreas Kohlbecker wrote:
> "Specimen (webservice)" still is not a very good label, alternatives are
>
> * "Speci... - 10:54 AM feature request #7019: sort import menu
- "Specimen (webservice)" still is not a very good label, alternatives are
* "Specimen (BioCase)"
* "Specimen (glob... - 10:47 AM feature request #7019: sort import menu
- For now we could simply use separators in the menu to separate specimen from taxa and those from references etc. But ...
- 10:44 AM feature request #7019: sort import menu
- Also we should rename "Import Specimen" to "Specimen (webservice)" and ABCD to "ABCD file" to give them a bit more se...
- 02:42 PM feature request #8470 (Resolved): Handle username constraints in user and group editing
- Applied in changeset commit:taxeditor|a0e1ca0573bdcbd929a27e347010da83a453c93c.
- 02:00 PM feature request #8470: Handle username constraints in user and group editing
- hmm, I think users and groups are special. There names are are unique identifiers and should not be changed anymore. ...
- 11:18 AM feature request #8470: Handle username constraints in user and group editing
- Another question:
at the moment the user is created and saved immediately, but the group is created and saved when... - 02:42 PM Revision a0e1ca05 (taxeditor): fix #8470: create user/group in creator
- 02:19 PM bug #8664: SQLGrammarException when opening Specimen selection
- I can't currently review as the accoding DB can't be connected to via TaxEditor at the moment. But code looks ok. I w...
- 10:28 AM bug #8664 (Resolved): SQLGrammarException when opening Specimen selection
- 01:24 PM Revision 5f582094 (cdmlib): cleanup
- 01:24 PM Revision 6ef5a0b1 (cdmlib): fix #8253 fix problem with infrageneric autonyms full reference parsing
- 01:23 PM Revision dfd3521b (taxeditor): ref #8470: check name by regex before creating
- 12:32 PM Revision e4101b39 (taxeditor): fix #7019 fix menu string
- 12:27 PM Revision 708b6366 (taxeditor): fix #7019 sort import menu
- 11:00 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Andreas Müller wrote:
> Can you please leave a note if this is easy to fix? Otherwise please move to new ticket as t... - 10:57 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Can you please leave a note if this is easy to fix? Otherwise please move to new ticket as the layout is not really p...
- 10:42 AM Revision 9021b90c (taxeditor): ref #8410: fix NPE
- 10:35 AM feature request #8410 (Closed): Add nomenclatural code edition to ruleConsidered in TaxEditor
- It looks better now. I think we can close the ticket.
- 10:26 AM Revision fab3ab30 (taxeditor): ref #8450 Show data set navigator menu in taxon navigator menu section
- 10:25 AM Revision 46a006fa (cdmlib): ref #8450 Fix SQLGrammarException when no taxa could be found
- 10:20 AM Revision 6448502c (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
- 10:19 AM Revision 739dc887 (taxeditor): ref #8470: exception handling also for groups
- 10:04 AM Revision 7bbfb091 (taxeditor): ref #8410: indent only for label -continue
- 09:50 AM Revision c127b2b6 (taxeditor): ref #8410: indent only for label
- 09:42 AM bug #8632 (Closed): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- 09:14 AM feature request #8613 (Closed): For distribution editor default reference should be used also when new source is created
- Seems to work now
11/07/2019
- 10:19 PM bug #8664: SQLGrammarException when opening Specimen selection
- I guess an empty list was the reason here. Isn't this fixed yet? If not I guess it is very easy to fix and we should ...
- 03:56 PM bug #8664 (Closed): SQLGrammarException when opening Specimen selection
… for „Test WorkingSet“ in MatrixEditor
~~~
login : admin
editor version : 5.11.0.201911041248
serve...- 05:12 PM feature request #8613 (Resolved): For distribution editor default reference should be used also when new source is created
- Katja Luther wrote:
> Andreas Müller wrote:
> > It still does not work if a source existed already before opening t... - 05:00 PM feature request #8613 (In Progress): For distribution editor default reference should be used also when new source is created
- Andreas Müller wrote:
> It still does not work if a source existed already before opening the DistrEditor for the gi... - 03:43 PM feature request #8613 (Feedback): For distribution editor default reference should be used also when new source is created
- It still does not work if a source existed already before opening the DistrEditor for the given record. Please test i...
- 09:10 AM feature request #8613 (Resolved): For distribution editor default reference should be used also when new source is created
- Andreas Müller wrote:
> Does not work for me yet. The reference field is still empty if I selected a base source and... - 05:11 PM Revision ca9d00b6 (taxeditor): ref #8613: send event to update details view when set default source
- 03:55 PM bug #8663 (Duplicate): LIE when trying to save a tree node
I tried to edit “Character Tree Test”-“second test structure third property” node in Character node editor.
Befo...- 03:53 PM bug #8662 (Closed): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
- … im Taxon filter als Kontextmenü. Auch wenn noch gar kein Taxon dort angezeigt wird.
Auch wenn Taxa existier... - 03:52 PM feature request #8661 (Closed): "New DataSet" should ask for label and then open the dataset
- … im Descriptive Data Set Navigator sollte den Descriptive Data Set Editor öffnen, damit das Dataset oder zumindest s...
- 03:51 PM feature request #8642 (Closed): Add tree editor for rank, NamedArea and PresenceAbsence
- Generic term tree menu creation moved to new ticket #8660. Also handling of not allowed duplicates #8655.
Close th... - 10:24 AM feature request #8642 (Resolved): Add tree editor for rank, NamedArea and PresenceAbsence
- Order is fixed.
Create new ticket for remaining issues -> #8655 - 03:50 PM bug #8660 (Duplicate): Generic menu creation for Term trees
- Currently the term tree menu is hardcoded. It should be implemented generically as the term (vocabulary) menu.
Thi... - 03:46 PM feature request #8648 (Closed): Simplify name details view configuration
- Works as expected now.
- 03:40 PM feature request #8470 (Feedback): Handle username constraints in user and group editing
- Please also implement for groups.
- 03:39 PM Revision 55236f7f (cdm-dataportal): ref #8596 harmonizing documentation
- 03:37 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- I don't insist in keeping this function in the ABCD import. I only feared that we lose valuable functionality. theref...
- 03:27 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- I suggest to close this ticket and if needed open a new ticket to discuss the necessity (and best implementation) of ...
- 03:09 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- As mentioned by Katja before I do not understand why we need it. It is work to keep such things running and as Katjas...
- 01:51 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Katja Luther wrote:
...
> ... But when the problems solved we can reintegrate it to the file import. It is only... - 01:33 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Andreas Kohlbecker wrote:
> Katja Luther wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
> > >... - 01:23 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > Andreas Kohlbecker wrote:
> > >... - 01:14 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
>... - 01:05 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Patrick Plitzner wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > We used the specimen search ... - 12:39 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > We used the specimen search for DNA in the Taxeditor. This ... - 11:49 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Andreas Müller wrote:
> why did you give this to Lutz? I guess this was a mistake?
OOPS! Thank you for fixing this. - 11:47 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- why did you give this to Lutz? I guess this was a mistake?
- 11:30 AM bug #8632 (Feedback): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- 11:28 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Patrick Plitzner wrote:
> We used the specimen search for DNA in the Taxeditor. This still works so no problems from... - 10:13 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- So AK, you may decide if this ticket can be fully closed. But I guess so.
- 10:05 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- We used the specimen search for DNA in the Taxeditor. This still works so no problems from my side
- 03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
- Andreas Kohlbecker wrote:
> There is still a problem related to this issue.
>
> The TaxonNavigator is not being r... - 03:22 PM bug #8659 (Closed): Taxon navigator: not refreshed after ABCD file import
- Copied from #8582
The TaxonNavigator is not being refreshed after importing an ABCD file, newly created classifica... - 03:19 PM feature request #8596 (Closed): Add a list of descriptions to the taxon page
- 01:48 PM feature request #8596: Add a list of descriptions to the taxon page
- from my perspective can this ticket be closed.
- 01:46 PM feature request #8596: Add a list of descriptions to the taxon page
- Patrick Plitzner wrote:
> Andreas K.: You mentioned that it is possible to assign **weights** to these blocks. Wit... - 12:36 PM feature request #8596: Add a list of descriptions to the taxon page
- But the tree that I mentioned can be used for both the block here and for the "description detail page" (#8595)
- 12:34 PM feature request #8596: Add a list of descriptions to the taxon page
- Patrick Plitzner wrote:
> Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here... - 12:30 PM feature request #8596: Add a list of descriptions to the taxon page
- Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here. Just about the order of T...
- 12:09 PM feature request #8596: Add a list of descriptions to the taxon page
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> Can you please explain this a bit more? Is there a Feature tr... - 11:57 AM feature request #8596: Add a list of descriptions to the taxon page
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Do we need a configuration method to define the "Description ... - 11:45 AM feature request #8596: Add a list of descriptions to the taxon page
- Andreas Müller wrote:
> Do we need a configuration method to define the "Description (aggregated)" feature tree? Oth... - 09:39 AM feature request #8596: Add a list of descriptions to the taxon page
- Do we need a configuration method to define the "Description (aggregated)" feature tree? Otherwise it seems to be imp...
- 09:22 AM feature request #8596: Add a list of descriptions to the taxon page
- Currently only the aggregated descriptions are shown.
What still needs to be implemented is the sort order of this... - 03:18 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- should we put back to "In Progress" or/and move to next milestone?
- 12:52 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- after applying the jdk8 memleak fix the effect on the cdm-server is not as good as for the cdmlib-remote-webapp alone...
- 02:32 PM feature request #8595: Create description detail page
- Code review notes:
* description.inc#1179 : `$enclosing_tag = cdm_feature_block_element_tag_name($feature_block_se... - 12:46 PM feature request #8595: Create description detail page
- Added specs from additivity wiki
- 12:05 PM feature request #8595: Create description detail page
- There are still many open issues (most of them discussed in additivity). So we need a follow up ticket. This ticket a...
- 11:38 AM feature request #8595 (Feedback): Create description detail page
- It is hard to review this ticket since the requirements to the layout of the page are missing in the ticket. Please a...
- 09:20 AM feature request #8595: Create description detail page
- Example: http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/description/dc871867-3d87-4fce-b42...
- 01:34 PM Revision 93666c75 (cdm-dataportal): ref #8596 changing render hint
- 01:12 PM Revision 0152a834 (cdm-dataportal): adding annotation to doc
- 01:09 PM bug #8605 (Worksforme): ClassCastException in Feature editor when adding new Defined Term
- I can't reproduce this either, so it seems as if this has been fixed in the context of another task
- 11:34 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term
- I tested this with the latest nightly on the mentioned database but could not reproduce this behavior.
- 12:41 PM bug #8225: Deleting one of two type designations removes both
- Andreas Müller wrote:
> I change back version as the preliminary fix was done in 5.6 I think. OK?
+1 - 10:16 AM bug #8225: Deleting one of two type designations removes both
- I change back version as the preliminary fix was done in 5.6 I think. OK?
- 10:10 AM bug #8225 (Closed): Deleting one of two type designations removes both
- Created a new ticket for a better fix -> #8654
- 12:32 PM feature request #8657 (Closed): Order description element in portal according to CharacterTree
- 12:13 PM feature request #8656 (Closed): [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix?
- du filterst in aggregateDescription() nur DescriptionElements die Characters als Feature haben. Das
~~~java
desc... - 11:35 AM feature request #8044 (Resolved): Add "Move to..." menu to term editor
- 11:15 AM bug #7143 (Closed): Finish not enabled when unprotecting titleCache in new Person dialog
- confirmed!
- 09:08 AM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
- this is fixed now.
- 11:09 AM feature request #8238: Allow interoperability between term trees
- Moving to next milestone for remaining issues
- 10:58 AM feature request #6849 (In Progress): [DISCUSS] How to handle "kind of" term creation in TermEditor
- 10:21 AM feature request #6849 (Closed): [DISCUSS] How to handle "kind of" term creation in TermEditor
- Closing this old discussion because the project ends. Documentation can be found in the ticket description and in the...
- 10:51 AM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor
- Dump deleted as it was not crucial to understand the problem.
- 10:37 AM feature request #8467: Save a "snapshot" of the SpecimenDescriptions used for aggregation
- moving to additivitiy milestone
- 10:36 AM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
- moving to additivitiy milestone
- 10:23 AM feature request #8655 (Duplicate): Handle duplicates in term tree editor
- Copied from #8642:
There is one related issue: if you create a new tree, by default "allow duplicates" is false, w... - 10:22 AM bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes
- moving to next milestone
- 10:10 AM task #8130: Check if related feature data is cleared when supported facts type is changed
- Move to next milestone for remaining discussion
- 10:09 AM bug #8654 (New): Find a better solution for deleting type designations
- Follow up of #8225
- 10:07 AM feature request #6774: Implement OWL export
- Move to next milestone because this is still considered experimental
- 10:06 AM feature request #8248: Implement OWL import
- Move to next milestone because this is still considered experimental
- 09:58 AM bug #8533 (Closed): missing collector and fieldnumber in abcd import
- > Why did you move it to 5.12. It has status resolved and should therefore be reviewed in 5.11 milestone. If there is...
- 08:57 AM Revision bbe6c98f (cdm-server): ref #5048 disabling url caching per instance for jdk1.8 to avoid memleak
11/06/2019
- 10:57 PM feature request #8253: Authors for genus autonyms
- Please review
- 10:34 PM feature request #8253 (Resolved): Authors for genus autonyms
- Applied in changeset commit:cdmlib|6d023e406becd840d1d95a88137f1bccb4a73eed.
- 10:34 PM Revision b06c96cf (cdmlib): cleanup
- 10:34 PM Revision 6d023e40 (cdmlib): fix #8253 correct parsing and formatting for authors of infra generic autonyms
- 10:09 PM Revision 09a3e42c (cdmlib): cleanup
- 10:06 PM Revision 029fa839 (cdmlib): cleanup
- 06:13 PM bug #5048 (Resolved): cdm-server causes unusual high native memory consumption for jvm
- Applied in changeset commit:cdm-server|d81181d86f476634377346f159ea9edcda67ba38.
- 06:08 PM bug #5048 (In Progress): cdm-server causes unusual high native memory consumption for jvm
- Andreas Kohlbecker wrote:
> I will now equip edit-test and edit-integration with the caches.xml workaround to disabl... - 05:20 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- I will now equip edit-test and edit-integration with the caches.xml workaround to disable url caching...
- 06:13 PM Revision d81181d8 (cdm-server): fix #5048 disabling url caching for jdk1.8 to avoid memleak
- 05:06 PM Revision 84503131 (taxeditor): ref #8450 Adjust style of literature description to default description
- 04:03 PM Revision 2cace77b (taxeditor): ref #7143: fix activation of finish button
- 03:53 PM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
- I would expect that the finish button is enabled after entering text in the TitleCache field only.
This is not y... - 03:46 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > * The "Configure Import Dialog" has changed, and has two issues... - 03:31 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Katja Luther wrote:
> the nomenclatural code selection page is removed
Did you add a label to the code selection ... - 03:17 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > There are still some problems which are not yet fixed:
> >
>... - 03:04 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Andreas Kohlbecker wrote:
> There are still some problems which are not yet fixed:
>
> * the taxon is not part of... - 03:02 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- the nomenclatural code selection page is removed
- 02:57 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- Andreas Kohlbecker wrote:
> There are still some problems which are not yet fixed:
>
> * the taxon is not part of... - 09:23 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- There are still some problems which are not yet fixed:
* the taxon is not part of the classification.
* the speci... - 03:02 PM Revision 21850e02 (taxeditor): ref #8631: remove nomenclatural code selection page for file import
- 02:54 PM task #8652 (Closed): disentangle confusion when connecting to development cdm instance fails
- 02:51 PM task #8652: disentangle confusion when connecting to development cdm instance fails
- Andreas Kohlbecker wrote:
> apparently these changes are not causing problems.
>
> @Katja: I think the changes th... - 08:57 AM task #8652: disentangle confusion when connecting to development cdm instance fails
- apparently these changes are not causing problems.
@Katja: I think the changes that I made to `ExtReferenceSelecti... - 02:49 PM feature request #8648 (Resolved): Simplify name details view configuration
- default handling is fixed now and labeling is changed as well.
- 02:13 PM Revision 161cf0e4 (taxeditor): show report for abcd file import
- 01:26 PM Revision b5394068 (cdmlib): adding jvmArgs to the maven jetty plugin config to allow for hasslefree mvn jetty:run-forked
- 01:19 PM Revision 6c8d17c5 (taxeditor): ref #8470: export ConstraintViolationException
- 01:06 PM feature request #8454 (Closed): Only allow certain patterns as username and groupname
- tested it in Editor and it seems to work (tested ' ', 'ö', '*')
- 01:03 PM feature request #8470 (Resolved): Handle username constraints in user and group editing
- Applied in changeset commit:taxeditor|2579d7d6b01fd0879bee9ab3a7621fbe8aec1009.
- 01:03 PM Revision 2579d7d6 (taxeditor): fix #8470: handle constraint violation exception for username
- 12:14 PM Revision 0c9b9bc2 (taxeditor): ref #8450 Fix order of taxon descriptions in matrix
- 11:52 AM Revision ed2341ee (cdmlib): ref #8450 Remove description type labels
- 11:03 AM Revision 99310e0d (taxeditor): ref #8648: default handling in name details preference - continue
- 10:42 AM Revision 37cff480 (taxeditor): ref #8648: default handling in name details preference
- 10:20 AM bug #8653 (Resolved): NullPointerException (NPE) when focusing Taxon Name Editor
- 10:18 AM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor
- Please remove milestone afterwards. It is an milestone internal bugfix.
- 10:17 AM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor
- As far as I can see this came with one of the latest changes. Should be easy to fix. Important before release.
- 09:42 AM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor
- Attaching dump of the DB: attachment.cdm_caryophyllales_demo_01.sql.bz2
- 09:35 AM bug #8653 (Closed): NullPointerException (NPE) when focusing Taxon Name Editor
- * I did the same ABCD import of `Arenaria_ABCD_one_unit.xml`
three times
* Then search for Arenaria serpyllifoli*
... - 10:19 AM Revision 00a7ae7a (taxeditor): ref #8648: set default for local, label issues
- 10:14 AM Revision d2e01dec (taxeditor): ref #8653: fix NPE
- 09:29 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- The question in comment 4 is for Patrick, so I am reassigning this ticket
- 09:27 AM bug #8582 (In Progress): Taxon Navigator: Classification label not refreshed & new taxa not visible
- There is still a problem related to this issue.
The TaxonNavigator is not being refreshed after importing an ABCD ... - 09:18 AM bug #8650 (Closed): PermissionDenied Exception for Teams when editing distributions
- this seems to be a problem of updated caches because of the IPNI import. After running the cache updater the problem ...
- 09:12 AM bug #8630 (Closed): ClassCastException when ABCD import has finished
- The problem is no longer reproducible, closing the issue.
- 09:09 AM bug #8634 (Closed): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator() on starting ABCD import
- could no longer reproduce the issue, closing the ticket.
11/05/2019
- 05:39 PM Revision 7ef0f93e (cdmlib): ref #8651 rename TransmissionEngineDistribution to DistributionAggregation
- 05:14 PM Revision ac2cee48 (cdmlib): ref #8651 fix compile error on linux (3rd try)
- 05:07 PM Revision b997cab9 (cdmlib): ref #8651 minor changes to TransmissionEngineDistribution and moving test
- 05:02 PM Revision 753627ae (cdmlib): ref #8651 fix compile error on linux (2nd try)
- 04:54 PM task #8652 (Resolved): disentangle confusion when connecting to development cdm instance fails
- Applied in changeset commit:taxeditor|2456bd7d10249f074c710ec82344610ec9226b5e.
- 04:53 PM task #8652 (Closed): disentangle confusion when connecting to development cdm instance fails
- It can be quite cumbersome to find the cause when connecting to a development cdm instance fails.
To connect this wa... - 04:54 PM Revision 2456bd7d (taxeditor): fix #8652 cleaning code related to system property cdm.server.dev.port and better error reporting
- 04:51 PM Revision 8b518049 (cdmlib): ref #8651 fix compile error on linux
- 04:39 PM feature request #8613 (Feedback): For distribution editor default reference should be used also when new source is created
- Does not work for me yet. The reference field is still empty if I selected a base source and then added a new source....
- 10:00 AM feature request #8613 (Resolved): For distribution editor default reference should be used also when new source is created
- this is implemented, please review
- 04:36 PM feature request #8648: Simplify name details view configuration
- Minor issue: can you rename the menu label in DB prefs from "Name Details View" to "Details View". From the given con...
- 04:34 PM feature request #8648 (Feedback): Simplify name details view configuration
- "Simple Name Details View" have been renamed as expected.
Also removing the field "Show simplified name detials vi... - 11:35 AM feature request #8648 (Resolved): Simplify name details view configuration
- Applied in changeset commit:taxeditor|b99d2118937199a57d8b4907a76eba41de08ed82.
- 11:24 AM feature request #8648 (Closed): Simplify name details view configuration
- mail AM:
Hallo Katja,
ich frage mich gerade, ob wir das Dropdown Feld „Show simplified name detials view with ... - 04:26 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Now the indentation is for both the label and the textfield. but I think for the label it is enough. Otherwise the la...
- 04:22 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- The list should always show an empty entry to make it possible to delete the field.
- 04:21 PM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
- I tried to change the nom code ICNAFP to ICZN for a name but the list did not change even after reopening the taxon.
- 01:42 PM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
- sorry, the last changes were not pushed, now they are available in the actual nightly build.
the combo box is fill... - 04:21 PM Revision 27b19ff5 (taxeditor): ref #8450 Show description type icons in factual data view
- 04:21 PM Revision 34ec2ac2 (cdmlib): Fix potential NPE
- 04:09 PM Revision 771a5159 (cdmlib): cleanup
- 04:09 PM Revision 7c5cb694 (cdmlib): ref #8651 first base classes for unified description aggregation and move SDD aggregation from service to new class
- 04:07 PM task #8651 (Closed): Unify description aggregation methods (distribution and structured descriptive data)
- Currentyl we have at least 2 methods/classes handling description aggregation, 1 for distribution data called Transmi...
- 03:14 PM bug #8650 (Closed): PermissionDenied Exception for Teams when editing distributions
- mail of JP:
Hallo Katja, heute bekomme ich ständig diese Fehlermeldung, woran könnte das liegen? Liebe Grüße Jonat... - 03:12 PM bug #8533: missing collector and fieldnumber in abcd import
- Why did you move it to 5.12. It has status resolved and should therefore be reviewed in 5.11 milestone. If there is a...
- 02:06 PM bug #8498 (In Progress): Set Flags should show the current status of the flags
- as we closed #8282, we can use this ticket to find out why there is a delay between setting the flag and getting the ...
- 02:04 PM feature request #8486 (Closed): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- 01:56 PM bug #8584 (Closed): Appended phrase should be shown on top level for misapplied names
- created new ticket for the layout issues (#8649) and close this ticket
- 01:54 PM feature request #8649 (New): Layout issues for misapplied name/pro parte synonyms
- Some open minor issues (open new ticket if not immediately fixable):
* Add identation (whitespace at beginning) f... - 01:52 PM bug #8531: factual data and media view always opened when opening taxon
- this is fixed.
Last problem is when the facts view is closed while the distribution editor is already open, then t... - 01:49 PM feature request #8572 (Closed): Rule considered configurable
- 01:47 PM feature request #8624 (In Progress): Add abbrev title cache to search in bulk editor
- 01:46 PM bug #8626 (Duplicate): NullPointerException (NPE) on saving Specimen Editor (list)
- I could not reproduce the problem, but I still keep #7699, so I close this as duplicate
- 01:44 PM bug #8631 (Resolved): ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- 01:41 PM Revision 37811f53 (taxeditor): ref #8410: add only nomenclatural code editions for code of name to combo
- 01:39 PM Revision b03087a0 (cdmlib): Fix class cast for streams in aggregation
- 01:27 PM Revision 6f4ce4b3 (taxeditor): reopen factual data and media view for taxa when opened before
- 01:25 PM bug #8622 (Resolved): Missing specimen Identifier leads to empty brackets in portal
- 01:25 PM feature request #8596 (Resolved): Add a list of descriptions to the taxon page
- 01:25 PM feature request #8467 (Resolved): Save a "snapshot" of the SpecimenDescriptions used for aggregation
- 01:24 PM feature request #8625 (Closed): Add count parameter to StateData
- This is already used in the aggregation algorithm and works fine
- 01:21 PM feature request #8595 (Resolved): Create description detail page
- 12:42 PM feature request #5873: Implement rights&roles for TaxEditor distribution editor
- I reverted some of the changes because it worked only if the user had rights on a subtree. so move the ticket to 5.12
- 12:32 PM Revision 8e675e6a (taxeditor): ref #8239: revert some of the implementations for the next release
- 11:34 AM Revision b99d2118 (taxeditor): fix #8648: simplify name details view
- 11:34 AM Revision 4963861e (taxeditor): ref #8634: fix NPE and biocase provider for dna search
- 10:30 AM Revision 7f287710 (cdmlib): cleanup
- 10:21 AM bug #7143 (Resolved): Finish not enabled when unprotecting titleCache in new Person dialog
- Katja Luther wrote:
> Andreas Kohlbecker wrote:
>
> With the actual nightly I cannot reproduce this problem anymo... - 10:09 AM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
- Andreas Kohlbecker wrote:
> Finish is not enabled when only the title cache is filled with data.
>
> Even after e... - 10:07 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- Patrick, can you please check if the DNA search is somehow needed in additivity context? I don't expect it but just t...
- 09:13 AM bug #8632 (Resolved): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- I removed the possibility to search for DNA for the abcd import because it created exceptions during save and it was ...
- 09:59 AM Revision 5548f6bc (cdm-dataportal): ref #8595 Fix compile error
- 09:56 AM bug #8634 (Resolved): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator() on starting ABCD import
- this is fixed
- 09:53 AM Revision 18110d8c (cdm-dataportal): ref #8595 Fix compile error
- 09:39 AM Revision d61e49ac (cdm-dataportal): ref #8595 Show specimen titleCache for source descriptions
- 09:24 AM Revision 074747bf (cdm-dataportal): ref #8595 Show characters in italic instead of bold
- 09:05 AM Revision 1601d218 (cdm-dataportal): ref #8595 Change header label for aggr. descriptions
- 09:01 AM bug #8630 (Resolved): ClassCastException when ABCD import has finished
- this is fixed.
11/04/2019
- 10:06 PM Revision 14e5960f (cdmlib): cleanup
- 10:06 PM Revision 0668c27e (cdmlib): better exception handling in MethodMapper
- 06:31 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- a single cdmlib-remote-webapp instance started from within the eclipse ide:
* RSS: 1297,05078125 MB
* heap used:... - 06:07 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- timeseries monitoring of the cdm-server running at edit-test with 6 instances:
This diagr... - 06:16 PM bug #8633: version 5.11 can not connect to workshop servers
- As this was only preliminary in 5.11 beta I remove target version
- 06:08 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > One more requirement I forgot to mention before:
> >
> > T... - 03:35 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Andreas Müller wrote:
> One more requirement I forgot to mention before:
>
> The list should show only those code... - 02:54 PM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
- One more requirement I forgot to mention before:
The list should show only those codes which fit to the nomenclatu... - 02:50 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Works!
> >
> > Only some layout issues:
> >
> > * ~~Please a... - 12:48 PM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
- 12:05 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Andreas Müller wrote:
> Works!
>
> Only some layout issues:
>
> * ~~Please add identation to label to make cl... - 06:05 PM bug #8626 (Feedback): NullPointerException (NPE) on saving Specimen Editor (list)
- I guess we can close this as Duplicate for #7699 (or as Workforme if you don't think #7699 is correct). Please remov...
- 03:08 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
- I remember that it was possible to reproduce this problem on the day when I wrote this ticket. Today, however, the pr...
- 05:48 PM feature request #8647 (New): Allow selecting named areas, ranks, presence-absence terms from term trees/collections
- It is possible now to create term trees for Named Areas, Presence-Absence-Terms and Ranks (and ofcourse Features).
... - 04:31 PM bug #8610 (Closed): tagged_text_extract_nomstatus() fails handling more than one status
- 04:31 PM bug #8610: tagged_text_extract_nomstatus() fails handling more than one status
- =Labiatae Juss., Gen. Pl.: 110. 1789, nom. cons.2, nom. altern.2
is now being displayed correctly in the data port... - 04:15 PM bug #7143 (Feedback): Finish not enabled when unprotecting titleCache in new Person dialog
- Finish is not enabled when only the title cache is filled with data.
Even after entering the family name it still ... - 04:08 PM bug #8605: ClassCastException in Feature editor when adding new Defined Term
- I extended the ticket descriptions to clarify what I did
- 04:03 PM Revision 4b428921 (cdm-dataportal): ref #8595 Show count for StateData + only show data when state!=null
- 03:58 PM bug #8374: Save genus generated for a species with a different reference
- removed version as this is a duplicate
- 03:44 PM feature request #8226 (Closed): make modifiers for description elements configurable
- Yes, this works now (except for the issue to be solved in #8236, but this is another ticket)
- 10:49 AM feature request #8226 (Resolved): make modifiers for description elements configurable
- now it should work.
- 03:33 PM Revision 879048dd (taxeditor): ref #8642 Change menu oder for tree editors
- 03:33 PM feature request #8572 (Feedback): Rule considered configurable
- Personally I would give even more indentation (see #8572#note-8). But this is up to you.
Generally we can close th... - 01:39 PM feature request #8572 (Resolved): Rule considered configurable
- I think all open issues are fixed.
* sub preference have more indent
* the label for "Secundum enabled..." is ful... - 03:24 PM feature request #8642 (Feedback): Add tree editor for rank, NamedArea and PresenceAbsence
- Generally works. Menu order please like discussed with Feature and Named Area on top, separator, PresenceAbsence, Ran...
- 03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
- Refreshing obviously is working again. Thanks for fixing.
- 02:38 PM bug #8639: Reorder Names in Preferences
- Andreas Kohlbecker wrote:
> I would prefer seeing these entries in alphabetical order.
Alphabetical order is the... - 01:21 PM bug #8639: Reorder Names in Preferences
- I would prefer seeing these entries in alphabetical order.
For me the new suggestion is harder to comprehend than... - 02:02 PM Revision 0b52ae5c (cdmlib): revert changes in abcd import test
- 01:39 PM Revision 064a8014 (taxeditor): ref #8450 Fix initial expansion state when refreshing matrix
- 01:37 PM Revision 2d931a85 (cdmlib): ref #8450 Display StateData.count if present
- 01:36 PM task #8466 (Closed): Delete FeatureTree tables
- 01:22 PM Revision 54c2a6e5 (taxeditor): ref #8572: some more indention for sub preferences
- 01:18 PM Revision 5006c242 (taxeditor): ref #8572: rule considered and code edition enable/disable in preferences
- 12:57 PM Revision 9b17d62b (taxeditor): layout issues in name details view preference
- 12:48 PM Revision 25364108 (taxeditor): ref #8410: add indent to code edition
- 10:57 AM bug #8645: rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
- Also Term Tree is not the really correct label as the import is for importing the whole ontology for structured descr...
- 10:48 AM Revision 6e9bf931 (taxeditor): ref #8226: fix show modifier
- 08:47 AM Revision 29b04663 (cdmlib): minor refactoring
11/03/2019
11/02/2019
- 10:26 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- The diagnosis method described in this article may help analyzing the problem: https://technology.blog.gov.uk/2015/12...
- 05:44 PM bug #8646: Character Details View should provide more information on the structure and property terms
- This could be done
a. by extending the label by this information or
b. by showing an infobox when hovering ove... - 05:37 PM bug #8646 (New): Character Details View should provide more information on the structure and property terms
- It should be possible the get more information on the structure and property term which make up the Character
![]... - 05:27 PM bug #8645 (Closed): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
- This import function is not a general OWL import.
The information on the nature of the data to be imported must be m...
11/01/2019
- 05:32 PM task #8644 (New): [PESI][FE] Verify FauEu PESI export
- 05:26 PM feature request #8643 (In Progress): [PESI][FE] Adpat new PESI export to FE requirements
- 05:24 PM feature request #8643 (In Progress): [PESI][FE] Adpat new PESI export to FE requirements
- PESI export has changed. FE export still needs to be adapted to these changes
- 05:25 PM Revision 0d988e0a (cdmlib-apps): ref #8643 adapt PesiExportActivatorFE to current state
- 05:10 PM Revision bb4d8757 (cdmlib-apps): cleanup
- 05:05 PM Revision 446b1e61 (cdmlib): ref #8450 Set "count" when aggregating StateData
- 04:45 PM Revision 882e2c02 (cdm-dataportal): ref #8595 Show aggregation description elements on taxon page
- 03:07 PM Revision caacf65b (taxeditor): adapt TaxEditor Test-H2 to model changes v5.11
- 03:06 PM Revision c6865762 (cdm-vaadin): adapt vaadin Test-H2 to model changes v5.11
- 02:55 PM feature request #8642 (Resolved): Add tree editor for rank, NamedArea and PresenceAbsence
- Applied in changeset commit:taxeditor|43fdbc98815ef71a54c68fe96a11ea189355accc.
- 02:52 PM feature request #8642 (Closed): Add tree editor for rank, NamedArea and PresenceAbsence
- 02:53 PM Revision 43fdbc98 (taxeditor): fix #8642 Add tree editor for rank, NamedArea and PresenceAbsence
- 02:43 PM task #8466 (Resolved): Delete FeatureTree tables
- Applied in changeset commit:cdmlib|74b86998eb26eb3fe74b837048f1aa9b1f0b9d3b.
- 02:43 PM feature request #8625 (Resolved): Add count parameter to StateData
- Applied in changeset commit:cdmlib|320e07b697daddc4133325fdea62ca414e0e582e.
- 02:26 PM Revision 5f0a3093 (cdmlib): update H2 test data and model cache
- 02:20 PM Revision 3a1e8815 (cdmlib): cleanup
- 02:10 PM Revision d7c686f4 (cdmlib): ref #8625 add count to StateData to FullCoverageDataGenerator
- 01:28 PM Revision 74b86998 (cdmlib): fix #8466 remove old FeatureTree tables
- 01:27 PM Revision 748cefc1 (cdmlib): cleanup
- 01:26 PM Revision 320e07b6 (cdmlib): fix #8625 add count to StateData
- 12:32 PM Revision 2b8a30e9 (cdmlib): move categorical data up in StateData and cleanup
- 12:11 PM Revision bd074233 (cdmlib): some cleanup for TransmissionEngineDistribution
- 12:10 PM Revision 0ced6c29 (cdmlib): cleanup
- 11:52 AM bug #8582: Taxon Navigator: Classification label not refreshed & new taxa not visible
- I guess this should be reviewed.
- 11:51 AM bug #8641: IAE (IllegalArgumentException) when exchanging name in taxon details view
- It happened when I tried to deduplicate some names in E+M after the IPNI 2019 import
- 11:50 AM bug #8641 (New): IAE (IllegalArgumentException) when exchanging name in taxon details view
- beim Austausch eines Namens für ein Taxon (also Wiederverwendung von Namen) bekomme ich regelmäßig (aber längst nicht...
- 11:43 AM task #8609 (Closed): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
- This seems to be fixed and can be closed.
Please reopen if some task is still left. - 11:38 AM bug #8622 (Feedback): Missing specimen Identifier leads to empty brackets in portal
- I will review after release on publication dataportal.
Can you please still add the link to the relevant portal si... - 11:30 AM feature request #7457 (Closed): E+M: Allow filtering for only published in search
- Seems to work.
Note: maybe we also need something like "Only unpublished", but this is another issue and needs an ... - 11:24 AM bug #8640 (New): Specimen preferences should be disabled if specimens are generally switched off
- If "Show specimen related views and menu entries" is switched off the other preferences should be disabled as they pr...
- 11:19 AM feature request #8226 (Feedback): make modifiers for description elements configurable
- Does not seem to work. If I have all switched on the modifiers do stil not show up.
- 11:13 AM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
- 10:57 AM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Works!
Only some layout issues:
* Please add identation to label to make clear belongs and depends on state of... - 11:13 AM feature request #8486 (Feedback): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Sometimes I realized that the menu only synchronizes after some time. So if I swith from doubtful to not doubful and ...
- 11:08 AM feature request #8486: Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Katja Luther wrote:
> now doubtful is "??", unplaced "?"
I think it is the other way round. But probably it is be... - 10:49 AM feature request #8568 (Closed): improve performance for term and vocabulary preference pages
- Performance is still not really fast sometimes but definetely acceptable for (seldom used) preferences. So we can clo...
- 10:12 AM bug #8639 (New): Reorder Names in Preferences
- Currently the order is
* Nomenclatural Code
* Nomenclatural Status
* Ranks
* Type Designations
* Name De... - 10:03 AM feature request #8572: Rule considered configurable
- Andreas Müller wrote:
> Please have some more identation for the sub-preferences on the name details view. Currently... - 09:56 AM feature request #8572: Rule considered configurable
- Andreas Müller wrote:
> The filtering does not work! Neither for project prefs nor for local prefs
A sorry this w... - 09:55 AM feature request #8572: Rule considered configurable
- Please have some more indentation for the sub-preferences on the name details view. Currently it is only ~1/3 of the ...
- 09:44 AM feature request #8572: Rule considered configurable
- If "rule considered" is not switched on also "Code edition" should be automatically be switched off in the preference...
- 09:42 AM feature request #8572: Rule considered configurable
- ~~The filtering does not work! Neither for project prefs nor for local prefs~~ => see #8572#note-9
- 09:38 AM feature request #8572 (Feedback): Rule considered configurable
- Please use human readable version for rule considered. E.g. by using getMessage().
@AK: which method do you use in... - 09:46 AM bug #8570: PolytomousKeyNode.otherNode missing in REST service response
- I will check this after release. We should link the related dataportal example from cuba(?) - see mail WGB.
- 09:34 AM bug #8584 (Feedback): Appended phrase should be shown on top level for misapplied names
- 09:34 AM bug #8584: Appended phrase should be shown on top level for misapplied names
- Yes the order is correct now and also the selection for top level controls makes sense.
Some open minor issues (op...
10/31/2019
- 03:58 PM Revision 42e926d0 (cdmlib): cleanup
- 03:51 PM Revision 2f18fc04 (cdmlib): cleanup
- 02:29 PM Revision a3314925 (cdmlib): add dummy file to cdmlib-cache/src/test/java to make the folder exist in git-repo
- 12:17 PM bug #8638 (New): Session behavior not deterministic
- It seems that the behavior of the session cache handling is not deterministic. I did exchange a name for a taxon by a...
- 11:27 AM bug #8637 (New): CCE when opening Session View for taxon navigator
- When trying to open the session view for the taxon navigator I get the below exception.
I think it is expected tha...
10/30/2019
- 11:39 PM bug #8612 (Closed): Import E+M IPNI names
- 11:38 PM bug #8612 (Resolved): Import E+M IPNI names
- Applied in changeset commit:cdmlib-apps|910fd9d6b6d97781707bfd9a6d48a3486975ebc3.
- 11:38 PM Revision 910fd9d6 (cdmlib-apps): fix #8612 final changes to E+MIpniImport
- 09:12 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
- This is probably the same issue as in #7699 and especially #7699#note-6
- 09:11 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
- AK, can you explain how far this ticket is related to the "copied to" ticket #8627
- 01:54 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
- Is this behaviour reproducable? I could not reproduce it
- 04:33 PM Revision 824f5653 (cdmlib): ref #8450 Fix potential NPE
- 04:30 PM Revision eb4a043b (cdmlib): ref #8450 Recurse through parent taxon nodes for default description
- 03:03 PM bug #8605 (Feedback): ClassCastException in Feature editor when adding new Defined Term
- I could not reproduce this exception. But I am not sure what you mean with the 3rd step "choose an existing term (e.g...
- 02:45 PM bug #8605 (In Progress): ClassCastException in Feature editor when adding new Defined Term
- 03:00 PM Revision a2d32af1 (cdmlib): remove whitespace after title for default references with only title and year
- 02:55 PM Revision 4ebcecf9 (cdmlib-apps): ref #8612 implementation of E+MIpniImport (near ready)
- 02:19 PM Revision c2f6e700 (cdmlib): fix test because dna provider is not set as default anymore
- 02:00 PM Revision cdbfdfb0 (cdmlib): cleanup
- 02:00 PM Revision 52a42c7d (cdmlib): ref #8612 use better generics for findByExample
- 01:49 PM Revision e28238b0 (cdmlib): add test file
- 01:27 PM Revision 0203fed0 (taxeditor): rename cdm instance to database
- 01:18 PM Revision 8a720214 (taxeditor): ref #8631: remove the possibility to search for dna when importing from abcd file
- 01:18 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- As a workaround the possibility to search for dna is disabled for file import. For the biocase seach it is still poss...
- 10:26 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- The ClassCastException should be solved with the last commit
- 09:56 AM bug #8631 (In Progress): ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- 09:55 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- the media was not imported because of a NPE, this is fixed.
the dna was not associated to the specimen because of wr... - 01:07 PM Revision 4ef89673 (cdmlib): add test for import abcd with search for available dna
- 01:07 PM Revision a021cb95 (cdmlib): remove default dna source
- 01:05 PM Revision c3d2f6db (cdmlib): change biocase provider to herbar to fix test
- 12:04 PM Revision be76eb89 (taxeditor): use same ABCDImportConfiguratorWizardPage for file import and search
- 10:21 AM Revision 92546b65 (taxeditor): ref #8631: fix ClassCastException for abcd import and NPE in abcd preferences
- 09:54 AM Revision f7717334 (cdmlib): ref #8631: fix errors in abcd import
- 12:19 AM bug #8636 (New): Handle "Change to Person" same as deduplication
- Currently when changing a single person team to a person the action is immediately saved and no new search is running...
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