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From 10/20/2019 to 11/18/2019

11/18/2019

10:07 PM bug #8696 (New): ehcahe discstore conflict when using the taxeditor with multiple users on the sa...
The diskstore must be created in user specific subfolders of the system temp folder.
We should consider creating a...
Andreas Kohlbecker
06:33 PM feature request #8695 (New): Specimen online import - provider selection should remember last choise
During the specimen online import the choice made in the provider selection always is reset to GBIF.
If the custom p...
Andreas Kohlbecker
05:39 PM feature request #8694 (Closed): Specimen online import - Specimen Search: import button layout pr...
The import button seems to have a negative offset:
![](picture967-1.png)
Andreas Kohlbecker
05:36 PM feature request #8693 (New): Specimen online import - Specimen Search: show number of result items
The count of specimens which are found by BioCase search should be shown in the Specimen Search View. Andreas Kohlbecker
05:33 PM bug #8692 (New): Specimen online import is slow
Importing ~200 Specimens via Import > Specimen > Specimen online took more than one hour for about 200 specimens
*...
Andreas Kohlbecker
04:29 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
Ok, this makes it much clearer. I will have a look if this can be implemented somehow. Andreas Müller
03:50 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
This configurator is used in a lot of places: specimen tree editor, specimen facet search (experimental), TaxonServic... Patrick Plitzner
03:08 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
Can you give some more information about context (specimen tree, matrix, dataportal, ...?) and other information requ... Andreas Müller
04:02 PM bug #6036: Problems with deleting type names
Is this still an open issue? Andreas Müller
04:00 PM bug #6182: Emptying protolog URI does not work
Protologues soon will be handled as OriginalSourceBase.externalLink, so not so important to fix Andreas Müller
03:58 PM bug #6585: Combo menu items have orange font
Is this still an open issue? Please also check on linux. Andreas Müller
03:56 PM feature request #6760: specimen import configuration
Is this still an open issue/duplicate/related to other tickets? Andreas Müller
03:53 PM Revision eba2d1f7 (cdmlib): typo
Patrick Plitzner
03:35 PM feature request #6676: A user with READ access to taxa but WRITE access to factual data cannot up...
I think this is something you are working on anyway. Andreas Müller
03:33 PM feature request #6866: Improve specimen page
Can you please relate this ticket with other tickets on this issue (specimen page)? Andreas Müller
03:01 PM bug #6545 (Closed): [MASTER] Eclipse 4 bugs
Andreas Müller
02:52 PM bug #7512: Saving in Specimen Tree View creates unwanted scrolling on windows
Can you please test if you can reproduce? Andreas Müller
02:39 PM bug #8129 (Closed): Load images asynchronously in media details view
Andreas Müller
02:38 PM bug #8129: Load images asynchronously in media details view
There is a follow up ticket #8691 Andreas Müller
02:36 PM bug #8691 (New): Remaining issues for asynchronous image loading
see #8129 for open issues Andreas Müller
02:33 PM bug #7911 (Worksforme): Changing areas in Distribution Editor yields to wrong column labels
Is probably fixed. Andreas Müller
02:31 PM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
Please check what is still open Andreas Müller
01:55 PM feature request #4511 (Rejected): Remove white space below EntitySelectionElement
Andreas Müller
01:39 PM feature request #4484: Evaluate publish flag for derivates in data portal
There is probably a duplicate somewhere. Ticket has some importance for GBOL specimen. Andreas Müller
12:41 PM Revision 29b21170 (cdmlib): add orcid and doi to identifier table
Katja Luther
10:40 AM feature request #8690 (New): DistributionTreeDTO and TreeNodeDTO implemented for description/dist...
The responses of the `/portal/description/distributionInfoFor/{uuid}` web-service can get quite huge for aggregated d... Andreas Kohlbecker
09:39 AM Revision f574c105 (cdmlib): revert some of the last changes
Katja Luther
09:28 AM Revision 38969108 (cdmlib-apps): ref #8651 adapt EuroMedActivator to changes in DistributionAggre...
Andreas Müller
09:27 AM Revision c49b3877 (cdmlib-apps): ref #8689 move Cdm2Cdm migration classes from cdm-pesi to cdmlib...
Andreas Müller
09:19 AM Revision 25516d86 (cdmlib): ref #8689 revert unwanted commited files
Andreas Müller
09:18 AM Revision 77281e25 (cdmlib): ref #8689 Cdm2Cdm import from app-import to cdmlib-io
Andreas Müller
09:18 AM EDIT Platform Etablierung task #8689 (Closed): Export Flora of Greece Bupleurum using Cdm2Cdm export
Andreas Müller
09:16 AM Revision b37495b9 (cdmlib): ref #8679 move DistributionAggregation functionality to base class
Andreas Müller
09:14 AM Revision 9c0a55dd (cdmlib): cleanup
Andreas Müller

11/17/2019

12:03 AM feature request #8472: Transmission engine for distribution aggregation needs to be adapted to ne...
Close only if run on cichorieae (and others?) and the tmp code removing existing "Computed" markers is not needed any... Andreas Müller
12:02 AM feature request #8472 (Resolved): Transmission engine for distribution aggregation needs to be ad...
Should be fixed now. Andreas Müller

11/16/2019

12:30 PM Revision c5fa3edd (cdm-dataportal): ref #8657 Add webservice call to cdm_api.module
Patrick Plitzner

11/15/2019

12:32 AM Revision 2acab840 (cdmlib): ref #8679 improve monitoring
Andreas Müller
12:05 AM Revision a8496b29 (cdmlib): ref #8679 improve tests
Andreas Müller
10:49 PM Revision 7800d0d0 (cdmlib): ref #8679 generic source handling with SourceModes
Andreas Müller
10:46 PM feature request #8688: Make OriginalSourceBase.cdmSource visible in TaxEditor
Please decide who could be assignee. It would be nice to have it soon. Andreas Müller
10:46 PM feature request #8688 (Closed): Make OriginalSourceBase.cdmSource visible in TaxEditor
The field OriginalSourceBase.cdmSource is usually filled during aggregations (for now). Therefore it does not need to... Andreas Müller
10:26 PM bug #8687 (New): Description page must show all DescriptionElement subclasses
Currently it seems to show only Categorical and Quantitative Data. But one never knows what data will really come wit... Andreas Müller
10:14 PM feature request #8686 (Closed): Support CdmLink sources in bibliography
OriginalSourceBase has the new attribute cdmSource. In original source this can exist instead of citation. Currently ... Andreas Müller
07:01 PM Revision c8424393 (cdmlib): cleanup
Andreas Müller
07:01 PM Revision 008371ae (cdmlib): ref #8679 move AggregationMode to ConfiguratorBase
Andreas Müller
06:07 PM Revision 7af2c900 (cdmlib): ref #8657 Add (remote) service for ordered description elements by tree
Patrick Plitzner
03:49 PM task #8679 (In Progress): Further unify description aggregation methods
Andreas Müller
03:30 PM feature request #8677: Add distribution aggregation to set subtree menu
I updated the above list Andreas Müller
03:09 PM feature request #8677: Add distribution aggregation to set subtree menu
Katja Luther wrote:
> In #6352 the mentioned configuration is:
>
> * lowerRank - default: UnknownRank = 5c4d6755...
Andreas Müller
02:31 PM feature request #8677: Add distribution aggregation to set subtree menu
In #6352 the mentioned configuration is:
* lowerRank - default: UnknownRank = 5c4d6755-2cf6-44ca-9220-cccf8881700...
Katja Luther
03:00 PM Revision 4ced804f (cdmlib): Allow wild cards in term facet search
Patrick Plitzner
02:59 PM Revision c7dfbd8b (taxeditor): Do not search with empty search string in facet search
Patrick Plitzner
01:43 PM bug #8517: SpecimenOrObservation: data from protected titleCache missig in portal pages
Andreas Müller wrote:
> This seems to work but handling the protected title cache of the **field** unit in the **der...
Andreas Kohlbecker
01:31 PM bug #8681 (In Progress): Fix sect. parsing
Andreas Müller
01:04 PM Revision 9235bde5 (cdmlib): ref #8679 fix rerun DistributionAggregation with changed sources and ...
Andreas Müller
01:01 PM task #8651 (Closed): Unify description aggregation methods (distribution and structured descripti...
Andreas Müller
01:01 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > AK and PP as you have developed the orginal classes maybe...
Andreas Müller
12:55 PM bug #8570 (Closed): PolytomousKeyNode.otherNode missing in REST service response
Works as expected. Andreas Müller
12:43 PM bug #8622 (Closed): Missing specimen Identifier leads to empty brackets in portal
I tested the above mentioned pages and they look fine. Andreas Müller
12:10 PM bug #8685 (Closed): Exception when calling DwC-A Export
Katja Luther
12:09 PM bug #8685 (Closed): Exception when calling DwC-A Export
mail:
Dear Andreas,
I enclose the error message I get from EDIT when I try to export the data in DwC-A format.
...
Katja Luther
10:55 AM Revision ed98102a (cdmlib-apps): ref #8651 adapt EuroMedActivator to changes in DistributionAggre...
Andreas Müller
10:54 AM Revision 83146769 (cdmlib-apps): ref #8684 fixing compile errors in cdm-pesi
Andreas Müller
10:49 AM Revision fd9dc38f (cdmlib): cleanup and minor
Andreas Müller
10:49 AM Revision 18d9b6eb (cdmlib): ref #8684 fixing compile errors in cdmlib-persistence
Andreas Müller
10:48 AM Revision 7d451c51 (cdmlib): fix potential NPEs in ABCD import
Katja Luther
10:21 AM task #8683 (Resolved): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authors...
Applied in changeset commit:cdmlib|ca3e66ff9cd00985c5175e8a38ba8eab64063a13. Andreas Kohlbecker
10:21 AM bug #8684 (Resolved): ITaxonService.findTaxaByName misses initStrategy Parameter
Applied in changeset commit:cdmlib|36a4a34fab6ca46f2d4b5c3707d55c2e2078e442. Andreas Kohlbecker
10:21 AM Revision 36a4a34f (cdmlib): fix #8684 adding initStratery to ITaxonService.findTaxaByName
Andreas Kohlbecker
09:57 AM Revision ca3e66ff (cdmlib): fix #8683 TaxonDaoHibernateImpl.countTaxaByName rename parameter auth...
Andreas Kohlbecker
09:49 AM Revision c4fb8d80 (cdmlib): fixing scary string compare bug
Andreas Kohlbecker
09:34 AM Revision e23faa0a (taxeditor): Remove experimental status for additivity related UI parts
Patrick Plitzner
09:28 AM Revision 3a88b57a (taxeditor): ref #8656 i18n for loading label
Patrick Plitzner
09:26 AM Revision 390ef5ac (taxeditor): ref #8656 Update label if matrix loadiung failed
Patrick Plitzner
09:06 AM feature request #8661 (Resolved): "New DataSet" should ask for label and then open the dataset
Applied in changeset commit:taxeditor|a61d053e67fceb35c6cfb0065d08651c09b002e6. Patrick Plitzner
09:05 AM Revision a61d053e (taxeditor): fix #8661 "New DataSet" should ask for label and then open the dat...
Patrick Plitzner
08:29 AM feature request #8665 (Resolved): Rename "New" to "New Tree" in Term Tree editors
Applied in changeset commit:taxeditor|c127cb13020855f630fc93b36842e45d063997e0. Patrick Plitzner
08:29 AM Revision c127cb13 (taxeditor): fix #8665 Rename menu item label
Patrick Plitzner

11/14/2019

05:16 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
Andreas Müller wrote:
> AK and PP as you have developed the orginal classes maybe you want to have a look to the n...
Andreas Kohlbecker
04:59 PM feature request #8673 (Closed): Allow OriginalSource to link to other CDM objects
works as expected Patrick Plitzner
04:57 PM Revision 524c5307 (taxeditor): Show DescriptionType message instead of toString()
Patrick Plitzner
04:52 PM bug #8676 (Closed): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
Andreas Kohlbecker
04:49 PM bug #8684 (Closed): ITaxonService.findTaxaByName misses initStrategy Parameter
ITaxonService.findTaxaByName misses initStrategy Parameter causing unsolvable LIEs when using via the portal service
...
Andreas Kohlbecker
04:46 PM task #8683 (Closed): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshi...
Andreas Kohlbecker
04:42 PM bug #5048 (Closed): cdm-server causes unusual high native memory consumption for jvm
last remaining subtask copied to #8682. ticket can now be closed. Andreas Kohlbecker
04:40 PM bug #8682 (Closed): cdm-server debian packages configured for jemalloc
in order to save native memory it is highly recommended to run the cdm-server with `jemalloc` instead of the system ... Andreas Kohlbecker
04:32 PM task #8674 (Closed): configure cdm-server docker image to run with jemalloc
everything ok! Andreas Kohlbecker
03:49 PM Revision 3411af18 (cdm-server): Merge branch 'release/5.11.0' into develop
jenkins
03:48 PM Revision 38d0d183 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
03:48 PM Revision 57b234aa (cdm-server): updating poms for branch'release/5.11.0' with non-snapshot versions
jenkins
03:47 PM Revision f90eb6c2 (cdm-webapp): Merge branch 'release/5.11.0' into develop
jenkins
03:47 PM Revision 11deb93a (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
03:47 PM Revision 66a333e4 (cdm-webapp): updating poms for branch'release/5.11.0' with non-snapshot versions
jenkins
03:47 PM Revision ffbc80d4 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.11.0
jenkins
03:47 PM Revision cf634b20 (cdm-dataportal): Merge branch 'release/5.11.0' into develop
jenkins
03:46 PM Revision c0b05cbc (cdm-dataportal): updating poms for branch'release/5.11.0' with non-snapshot ve...
jenkins
03:46 PM Revision cb5a98c5 (cdm-dataportal): release-preparation: production level css
jenkins
03:46 PM Revision 56b76499 (taxeditor): Merge branch 'release/5.11.0' into develop
jenkins
03:46 PM Revision 62c5bf9d (taxeditor): Merge branch 'release/5.11.0'
jenkins
03:45 PM Revision e5e80f40 (cdm-vaadin): Merge branch 'release/5.11.0' into develop
jenkins
03:45 PM Revision f302dddc (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
03:41 PM Revision 7649bbba (cdm-vaadin): updating poms for branch'release/5.11.0' with non-snapshot versions
jenkins
03:41 PM Revision 0ba1a84a (cdm-vaadin): jenkins bumping cdmlib.version to 5.11.0
jenkins
03:40 PM Revision 0fb9a6f8 (cdmlib): Updating develop poms back to pre merge state
jenkins
03:40 PM Revision 7488b0d6 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:40 PM Revision 34fc89c8 (cdmlib): Merge branch 'master' into develop
jenkins
03:40 PM Revision 458c738d (cdmlib): Merge branch 'release/5.11.0'
jenkins
03:23 PM Revision af102b7d (cdmlib): updating poms for branch'release/5.11.0' with non-snapshot versions
jenkins
02:34 PM bug #8681 (In Progress): Fix sect. parsing
See open issue in #8253 . Maybe it is a more general problem.
"this is in Rank.java and the map idInVocMap is fil...
Andreas Müller
02:32 PM feature request #8253 (Closed): Authors for genus autonyms
I found the place. And probably fixed it but will not commit before release as it needs to be further tested.
Crea...
Andreas Müller
02:19 PM feature request #8253: Authors for genus autonyms
Andreas Müller wrote:
> Can you give some more information where to find these things? Especially "map of the idInV...
Katja Luther
02:14 PM feature request #8253: Authors for genus autonyms
Can you give some more information where to find these things? Especially "map of the idInVocMap " Andreas Müller
02:06 PM feature request #8253 (Feedback): Authors for genus autonyms
Katja Luther
01:40 PM feature request #8253: Authors for genus autonyms
I found the cause of the parsing problem:
when searching for the rank by Rank.getRankByIdInVoc(infraGenRankMarker)...
Katja Luther
02:26 PM Revision dd0fb528 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.11.0-S...
jenkins
02:26 PM Revision c4b15330 (cdm-webapp): updating poms for 5.12.0-SNAPSHOT development
jenkins
02:26 PM Revision 281fde70 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.12.0-S...
jenkins
02:25 PM Revision 451335ef (taxeditor): Updated version in pom / project files to taxeditor version : 5.12...
jenkins
02:25 PM Revision fde64bdb (taxeditor): Updated version in pom / project files to taxeditor version : 5.11...
jenkins
02:23 PM Revision e2ef05a4 (cdm-server): updating poms for 5.12.0-SNAPSHOT development
jenkins
02:23 PM Revision b48c4700 (cdm-vaadin): jenkins bumping cdmlib.version to 5.11.0-SNAPSHOT
jenkins
02:23 PM Revision fd8f8d26 (cdm-vaadin): updating poms for 5.12.0-SNAPSHOT development
jenkins
02:23 PM Revision a12486b5 (cdm-dataportal): updating poms for 5.12.0-SNAPSHOT development
jenkins
02:23 PM Revision 3f458b2b (cdm-vaadin): updating poms for 5.11.0 branch with snapshot versions
jenkins
02:23 PM Revision 82fd6211 (cdm-vaadin): jenkins bumping cdmlib.version to 5.12.0-SNAPSHOT
jenkins
02:21 PM Revision b0cbc440 (cdmlib): updating poms for 5.12.0-SNAPSHOT development
jenkins
02:00 PM Revision f31fdd6b (cdm-dataportal): ref #8673 Fix description title display on taxon page
Patrick Plitzner
01:15 PM bug #8631 (Closed): ABCD import fails to put new taxa into the classification, create mediaspecim...
Katja Luther
01:00 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
It looks ok in KDE!
The ticket can be closed.
Andreas Kohlbecker
12:25 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Müller wrote:
> It look ok now. Only change I suggest: let the "Biocase provider for DNA" dropdown start at ...
Andreas Müller
09:55 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
It look ok now. Only change I suggest: let the "Biocase provider for DNA" dropdown start at the same horizontal posit... Andreas Müller
01:00 PM feature request #8667 (Closed): Make Person.orcid editable in TaxEditor
Andreas Müller
12:56 PM feature request #8667 (Resolved): Make Person.orcid editable in TaxEditor
this is fixed Katja Luther
12:54 PM Revision 64090e78 (cdmlib): cleanup
Andreas Müller
12:16 PM Revision 4c0d4268 (cdmlib): cleanup
Andreas Müller
12:15 PM Revision 9449fa3d (cdmlib): ref #8651 useClearExistingDistribution = false as default
Andreas Müller
11:56 AM Revision 91006ade (cdmlib): ref #8651 cleanup DistributionAggregation and remove old computed mar...
Andreas Müller
11:54 AM Revision 18683dc6 (taxeditor): ref #8631: layout issues
Katja Luther
11:37 AM Revision f6a63f8b (cdmlib): ref #8673 CdmLinkSourceBeanProsessor disabled and init strategy for c...
Andreas Kohlbecker
10:57 AM Revision dcc025b4 (taxeditor): use preferencePredicate.EditMapServiceAccessPoint in featureDistri...
Katja Luther
10:38 AM Revision 2f1bb433 (taxeditor): cleanup
Andreas Müller
10:07 AM Revision e6287d4a (cdmlib): avoid NPE in dataholder
Katja Luther
09:59 AM Revision d6dc2032 (cdmlib): smaller issues in abcd import
Katja Luther
09:55 AM Revision 5e751d05 (cdmlib): minor
Katja Luther
09:51 AM Revision b0e71e93 (taxeditor): avoid exception when export config does not have userfriendlyIOName
Katja Luther
09:47 AM Revision 44434863 (cdmlib): add userFriendlyIOName to Dwca Configurator
Katja Luther
07:54 AM Revision 4e506608 (cdm-dataportal): ref #8673 Fix description title display on taxon page
Patrick Plitzner
07:46 AM Revision 79e61daa (cdm-dataportal): ref #8673 Adapt more specific description type
Patrick Plitzner

11/13/2019

12:11 AM Revision c1ede4f8 (cdmlib): ref #8651 implement reuse of distributions in DistributionAggregation
Andreas Müller
10:50 PM Revision 85884141 (cdmlib): ref #8651 further cleanup DistributionAggregation
Andreas Müller
09:55 PM Revision 27dd2015 (cdmlib): fix compile error
Andreas Müller
09:48 PM Revision 0cfec87b (cdmlib): ref #8651 further cleanup DistributionAggregation
Andreas Müller
09:47 PM Revision bd522a58 (cdmlib): cleanup
Andreas Müller
05:26 PM Revision ec44caf9 (cdmlib): ref #8651 cleanup DistributionAggregation
Andreas Müller
05:23 PM Revision 7926167f (cdmlib): cleanup
Andreas Müller
05:21 PM Revision 778d2800 (cdmlib): cleanup ProgressMonitor
Andreas Müller
05:16 PM Revision 2412e7b6 (cdmlib): ref #8673 CdmLinkSourceBeanProsessor proper null handling
Andreas Kohlbecker
05:12 PM Revision f5c38c85 (taxeditor): fix possible NPE
Patrick Plitzner
05:06 PM Revision 3fa32caf (taxeditor): ref #8651 Adapt to finer grained aggregation description type
Patrick Plitzner
04:31 PM Revision 628c6976 (cdmlib): ref #8673 CdmLinkSourceBeanProsessor to serialize CdmLinkSource as Ty...
Andreas Kohlbecker
03:20 PM feature request #8673: Allow OriginalSource to link to other CDM objects
CdmLinkSourceBeanProsessor implemented but cannot test since i can't find data with CdmLinkSource
@Patrick: please...
Andreas Kohlbecker
12:50 PM feature request #8673: Allow OriginalSource to link to other CDM objects
We still need to check if the empty constructor of CdmLinkSource also could be protected. Patrick could you do this? Andreas Müller
03:19 PM Revision 019036d1 (cdmlib): ref #8673 CdmLinkSourceBeanProsessor to serialize CdmLinkSource as Ty...
Andreas Kohlbecker
03:07 PM Revision a7df73f0 (cdmlib): ref #8651 cast failing in LINUX
Andreas Müller
02:59 PM Revision 2a00d0b3 (cdmlib): cleanup
Andreas Müller
02:59 PM Revision f24fb983 (cdmlib): ref #8651 fix missing uuid
Andreas Müller
02:50 PM Revision a914faf1 (cdmlib): ref #8651 Introduce new description type "Aggregated Structured Descr...
Andreas Müller
02:48 PM Revision 8a7e4037 (cdmlib): cleanup
Andreas Müller
02:37 PM feature request #8680 (New): Unify long running tasks framework
Long running task are currently implemented at many places and for multiple purposes.
Some things we could do:
...
Andreas Müller
02:14 PM Revision 8e1870d6 (cdmlib): cleanup
Andreas Müller
02:09 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
Andreas Müller wrote:
>
> Before closing we should delete the redundant methods from DescriptiveDataSetService. ...
Patrick Plitzner
01:06 PM task #8651 (Resolved): Unify description aggregation methods (distribution and structured descrip...
We do now have a common base class and also the LongRunningTaskService used only 1 method (with config as parameter).... Andreas Müller
01:48 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
I made some changes myself. Looks fine on Linux. Please test on windows. Patrick Plitzner
12:35 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
@Patrick could you have another look, whether it looks better now. It is difficult to check for me because with windo... Katja Luther
01:47 PM Revision d36d2eb8 (taxeditor): ref #8631 Fixed layout + merged constructors
Patrick Plitzner
01:27 PM Revision c68519c0 (cdmlib): ref #8651 Remove aggregation methods(now in DescriptionAggregationBase)
Patrick Plitzner
01:03 PM feature request #8253: Authors for genus autonyms
Katja Luther wrote:
> Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes...
Katja Luther
01:01 PM task #8679 (Closed): Further unify description aggregation methods
Common base classes already exist. Further work might be:
* ~~use the same calls for "aggregateWithinTaxon", "aggr...
Andreas Müller
12:59 PM feature request #8470 (Closed): Handle username constraints in user and group editing
Seems to work as expected Andreas Müller
12:53 PM feature request #7019 (Closed): sort import menu
Works as expected. Andreas Müller
09:14 AM feature request #7019 (Resolved): sort import menu
Patrick Plitzner
12:27 PM task #8678 (New): Update Fauna Europaea Master Db for common names with area = North America and ...
Some common names had "English-United States" as language and where imported with language = English and Area = North... Katja Luther
12:22 PM Revision 67ab92f3 (cdm-dataportal): ref #8673 Adapt portal to CdmSource eager loading
Patrick Plitzner
11:32 AM Revision f4c1a988 (cdmlib): add default priority to distribution aggregation webservice
Andreas Müller
11:32 AM Revision d1292203 (cdmlib): ref #8651 always add description type to aggregated descriptions
Andreas Müller
11:32 AM Revision 7841cf62 (cdmlib): cleanup
Andreas Müller
11:17 AM Revision 453261d0 (cdmlib): ref #8673 Extend property path for CdmSources
Patrick Plitzner
11:15 AM Revision 1e2fd81a (cdmlib): ref #8673 make cdmSource Eager to avoid LIEs
Andreas Müller
10:42 AM Revision 065e965b (cdm-dataportal): ref #8673 Adapt portal to CdmSource for aggregation clones
Patrick Plitzner
10:30 AM Revision c32e83c4 (cdmlib): ref #8673 Extend property path for CdmSources
Patrick Plitzner
08:37 AM feature request #6337 (Rejected): simple web ui to trigger the transmission engine distribution
I also agree Andreas Kohlbecker
08:36 AM feature request #6337: simple web ui to trigger the transmission engine distribution
Norbert wrote:
I agree that TaxEditor is the preferred place to run aggregation, see no need for an implementation...
Andreas Kohlbecker
08:35 AM Revision 4eedd13b (taxeditor): ref #8651 Adapt to cdmlib aggregation configuration
Patrick Plitzner

11/12/2019

11:46 PM Revision 67146e56 (cdmlib): cleanup
Andreas Müller
11:46 PM Revision 58ea183c (cdmlib): ref #8651 smaller changes to distribution accumulation webservice
Andreas Müller
11:32 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
Shouldn't we rename the parameter to authorshipCache in the service layer methods. Because that is what it is. Andreas Müller
09:05 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
no worries, it was fixed already when I created the ticket. I only had no time to commit and push. Andreas Kohlbecker
09:03 PM bug #8676 (Resolved): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
Applied in changeset commit:cdmlib|83c72818d2e637f56f3e956c99cb0e6c1e508cbd. Andreas Kohlbecker
06:10 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
Why is this in 5.11. Please fix immediately if you want to keep it here. Otherwise move. Andreas Müller
05:37 PM bug #8676 (Closed): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
The find method corresponding to `countTaxaByName(Class <? extends TaxonBase> clazz, String uninomial, String infrag... Andreas Kohlbecker
11:08 PM Revision 9d192006 (cdmlib): ref #8651 register UUID lists for distribution accumulation webservice
Andreas Müller
11:08 PM Revision 39c4cced (cdmlib): cleanup
Andreas Müller
09:03 PM Revision f31f3e26 (cdmlib): updating jetty microversion in launcher
Andreas Kohlbecker
09:03 PM Revision 83c72818 (cdmlib): fix #8676 adding authorship parameter to countTaxaByName
Andreas Kohlbecker
06:36 PM feature request #6337: simple web ui to trigger the transmission engine distribution
Andreas (and maybe Norbert, Eckhard). Can you please decide if this is still needed at all. I guess if a TaxEditor UI... Andreas Müller
06:28 PM feature request #6352: Add Transmission Engine trigger to Admin menu
This is more or less a duplicate for #8677. There it is defined as called in "Set subtree" menu.
Probably we need di...
Andreas Müller
06:16 PM task #8651 (In Progress): Unify description aggregation methods (distribution and structured desc...
This is basically done but there are mutliple open tasks Andreas Müller
06:14 PM feature request #5176 (Resolved): TransmissionEngineDistribution can run on selected taxa
This should be fixed. Andreas Müller
06:13 PM bug #4134 (Resolved): Transmissionengine Distribution seems to miss distributions for higher Taxa
I set to resolved as I guess it is fixed. But needs to be reviewed. Andreas Müller
06:09 PM feature request #8470: Handle username constraints in user and group editing
I guess this is for review Andreas Müller
11:37 AM feature request #8470: Handle username constraints in user and group editing
Andreas Müller wrote:
> Also in the "New" dialog there is a message "Input cannot be empty". Also here further infor...
Katja Luther
11:36 AM feature request #8470 (Resolved): Handle username constraints in user and group editing
Andreas Müller wrote:
> Can you please leave a message how exactly you changed the issue discussed in note 7 and 8. ...
Katja Luther
10:53 AM feature request #8470: Handle username constraints in user and group editing
Also in the "New" dialog there is a message "Input cannot be empty". Also here further information on the allowed cha... Andreas Müller
10:52 AM feature request #8470: Handle username constraints in user and group editing
Can you please leave a message how exactly you changed the issue discussed in note 7 and 8. The discussion was not en... Andreas Müller
10:49 AM feature request #8470: Handle username constraints in user and group editing
Andreas Müller wrote:
> Now when creating a new user the bulkeditor is dirty. When NOT saving the bulk editor and af...
Andreas Müller
10:47 AM feature request #8470 (Feedback): Handle username constraints in user and group editing
Now when creating a new user the bulkeditor is dirty. When NOT saving the bulk editor and after reopening the bulk ed... Andreas Müller
06:08 PM feature request #8677 (Closed): Add distribution aggregation to set subtree menu
There is a new long running task "DisributionAggregation" which runs on a TaxonNodeFilter (#8651 and others). It shou... Andreas Müller
04:48 PM Revision c655943d (cdmlib): ref #8651 factory method and base constructor for aggregation configu...
Andreas Müller
03:22 PM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, pane...
Die Umfrage ist abgeschlossen und ausgewertet (attachment:Taxeditor-Terms-Poll-2019.pdf):
-----
Hallo zusammen,
...
Andreas Kohlbecker
03:21 PM Revision a51edae3 (cdmlib): ref #8651 unify invocation call in LongRunninTasksService
Andreas Müller
03:00 PM Revision 140a83b3 (taxeditor): ref #8470: change null to empty in message
Katja Luther
02:54 PM Revision 768595a5 (taxeditor): ref #8350: avoid IllegalArgumentException
Katja Luther
02:51 PM Revision e116bd58 (taxeditor): fix NPE in StoreUtil
Katja Luther
02:37 PM Revision a2dd1526 (cdmlib): ref #8651 use explicit conifguration for structured descriptions
Andreas Müller
02:27 PM Revision 68c9d8e4 (taxeditor): Rename menu entry for DDS navigator
Patrick Plitzner
01:45 PM Revision 99a9422e (taxeditor): ref #8667: minor
Katja Luther
01:35 PM Revision a02567b7 (taxeditor): layout issues for create taxonnode wizard
Katja Luther
01:35 PM Revision 95622e27 (taxeditor): ref #8470: user/group creation string localization
Katja Luther
01:35 PM Revision df2a4c41 (taxeditor): ref #8667: l10n for orcid element
Katja Luther
01:35 PM Revision 755b2883 (taxeditor): ref #8667: smaller layout issues for orcids
Katja Luther
01:35 PM Revision 5dd36b69 (taxeditor): ref #8470: user/group creation continue
Katja Luther
01:35 PM Revision 905fdec1 (taxeditor): ref #8631: same layout for unit id and nomenclatural code combobox
Katja Luther
01:03 PM Revision 7f601c27 (taxeditor): ref #8651 Use unified aggregation class for matrix aggregation
Patrick Plitzner
01:02 PM Revision 5f993e31 (taxeditor): ref #7019 Fix menu sort order of navigation context menu
Patrick Plitzner
12:04 PM bug #8675: Make Ranks sortable by natural order
Best place might be the Names-Ranks preference page Andreas Müller
12:03 PM bug #8675 (New): Make Ranks sortable by natural order
This was already available in past but seems being lost in current version. Andreas Müller
11:42 AM bug #8628 (Closed): Add ORCID as person identifier
this message is easier to understand how the identifier should look like Katja Luther
09:40 AM bug #8628 (Resolved): Add ORCID as person identifier
I adapted the error messages a bit. Can you please review again? Andreas Müller
11:40 AM bug #8664 (Closed): SQLGrammarException when opening Specimen selection
I tested again and it seems to work now. Andreas Müller
11:34 AM feature request #8253 (Resolved): Authors for genus autonyms
By the way the parser for me now also works with names like "Achnanthes Bory sect. Achnanthes". So can you please che... Andreas Müller
11:30 AM feature request #8253: Authors for genus autonyms
Katja Luther wrote:
> Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes...
Andreas Müller
11:19 AM Revision 5394c18a (cdmlib): Fix potential class cast exception
Patrick Plitzner
11:19 AM Revision 46278434 (cdmlib): ref #8651, #8467 Use unified aggregation class for matrix aggregation
- Link specimen descriptions as sources as direct CDM entities Patrick Plitzner
10:56 AM Revision 6d1c29e8 (taxeditor): ref #8470: user/group editor should not be dirty after creating ne...
Katja Luther
10:38 AM feature request #7019: sort import menu
Kannst du dann noch umbenennen: ABCD => ABCD file; Excel Normal Explicit Taxa => Exel Normal Explicit; RIS Referenze... Andreas Müller
10:37 AM feature request #7019: sort import menu
Andreas Müller wrote:
> It seems to depend on experimental being switcht on or not. In later case the old menu appea...
Andreas Müller
10:24 AM feature request #7019: sort import menu
It seems to depend on experimental being switcht on or not. In later case the old menu appears. Andreas Müller
10:02 AM feature request #7019: sort import menu
I still get the old menu no matter what I do. I deleted the .metadata folder, I downloaded a completely new TaxEditor... Andreas Müller
09:39 AM Revision e82373d1 (cdmlib): ref #8628 Improve error messages for ORCID parsing
Andreas Müller
09:26 AM Revision 00fafe2a (cdmlib): ref #8651 remove MarkerType.Computed where possible
Andreas Müller
09:25 AM Revision c597851f (cdmlib): cleanup
Andreas Müller
08:34 AM Revision 291ea3f3 (cdmlib): ref #8651 fix failing tests due to order of aggregation
Andreas Müller
01:51 AM Revision 3a97a754 (cdmlib): ref #8651 remove some comments and handle AggregationMode correctly
Andreas Müller
01:40 AM Revision d062baaf (cdmlib): ref #8651 fix failing tests due to use of old description markers
Andreas Müller
01:39 AM Revision 7c03912b (cdmlib): ref #8651 merge area and rank aggregation for DistributionAggregation
Andreas Müller

11/11/2019

12:46 AM Revision 406d4d96 (cdmlib): fix max rank in DwcaExportController
Andreas Müller
12:45 AM Revision 3b1c92ca (cdmlib): ref #5176 add all taxon node filter attributes to distribution aggreg...
Andreas Müller
12:44 AM Revision 5c148b4e (cdmlib): ref #8651 more specific description type for DistributionAggregation
Andreas Müller
11:48 PM Revision 3807d9cb (cdmlib): cleanup
Andreas Müller
11:46 PM Revision 6be3adaa (cdmlib): ref #5176, ref #8651 make DistributionAggregation treeIndex based and...
Andreas Müller
11:38 PM feature request #4366: Transmissionengine Distribution: implement rules for source references
From AG:
The original BM Transmission Engine was handled references ONLY for the Med_Check_List 2 use cases. For E...
Andreas Müller
11:38 PM task #8674: configure cdm-server docker image to run with jemalloc
the new docker image is now based on ubuntu:bionic since jemalloc in alpine Linux fails with segfault.
Therefore I ...
Andreas Kohlbecker
11:33 PM task #8674 (Resolved): configure cdm-server docker image to run with jemalloc
Applied in changeset commit:cdm-server|a9e82e311a06d536699eefabdf13b89fbb8e6220. Andreas Kohlbecker
02:41 PM task #8674 (Closed): configure cdm-server docker image to run with jemalloc
Andreas Kohlbecker
11:33 PM Revision a9e82e31 (cdm-server): fix #8674 docker image based on ubuntu:bionic with openjdk8 and j...
Andreas Kohlbecker
11:31 PM Revision 3fe716be (cdm-server): gitignore
Andreas Kohlbecker
02:04 PM feature request #8667: Make Person.orcid editable in TaxEditor
Please add space after "ORCID won't be saved!" , before the real error message. Andreas Müller
02:01 PM feature request #8667 (Feedback): Make Person.orcid editable in TaxEditor
The error message does not always have enough space
![](picture969-1.png)
Andreas Müller
12:39 PM feature request #8667 (Resolved): Make Person.orcid editable in TaxEditor
The field is added to the editor. please review. Katja Luther
01:58 PM feature request #8673: Allow OriginalSource to link to other CDM objects
Can you please review?
Please also have in mind that webservices should not deliver the full cdmobject and maybe e...
Andreas Müller
01:52 PM bug #8631 (Feedback): ABCD import fails to put new taxa into the classification, create mediaspec...
So the layout still needs some update for linux, I guess. Andreas Müller
11:08 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
This is how it looks for me. Started the editor from the IDE.
![](picture468-1.png)
Patrick Plitzner
12:59 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
configuring the test server to use `jemalloc` instead of `malloc?` drastically reduced the native memory overhead:
...
Andreas Kohlbecker
12:50 PM bug #8628: Add ORCID as person identifier
This is difficult because multiple formats are possible (with http, https, only orcid.org or completely missing all p... Andreas Müller
11:06 AM bug #8628 (Feedback): Add ORCID as person identifier
Could you add an example in the exception message to show how it should look like. And that an x at the end is possib... Katja Luther
12:37 PM feature request #8253 (Feedback): Authors for genus autonyms
Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes sect. Achnanthes Bory,... Katja Luther
12:32 PM feature request #8470: Handle username constraints in user and group editing
please review Katja Luther
12:12 PM Revision c1217ecf (cdmlib): ref #8673 Fix NPE for OriginalSourceBase.getCdmSource
Andreas Müller
11:14 AM feature request #7019: sort import menu
Tried this morning. Seems to work. Please download and try again. Patrick Plitzner
11:02 AM Revision 11761cac (taxeditor): Externalize fragment IDs
Patrick Plitzner
11:02 AM Revision 39913f14 (taxeditor): Add constant for term search to default perspective
Patrick Plitzner
10:49 AM Revision a704339f (taxeditor): ref #8667: add orcid to person detail element - continue
Katja Luther
10:18 AM Revision b2e5f9bf (taxeditor): ref #8667: add orcid to person detail element
Katja Luther
09:47 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
mail Inan Erdogan:
ich glaube das passiert bei mir fast ausschliesslich, wenn ich entweder im Hauptansichtsfeld de...
Katja Luther
09:37 AM bug #4134: Transmissionengine Distribution seems to miss distributions for higher Taxa
AM:
Ja, ich habe dann später auch festgestellt, dass die Aggregation bis zum Tribus in dem Fall gewünscht war. Dah...
Andreas Müller
09:28 AM bug #4134 (In Progress): Transmissionengine Distribution seems to miss distributions for higher Taxa
NK:
Vor eine Neuaggregation können und sollten die Neuberechnungen auf Subtribus- und Tribus-Ebene gelöscht werden...
Andreas Müller
09:37 AM Revision cb45e05b (taxeditor): ref #8631: layout issues in abcd import wizard page and refresh of...
Katja Luther

11/10/2019

12:30 PM Revision c8c05549 (cdmlib): cleanup
Andreas Müller
12:30 PM Revision 186cf7ed (cdmlib): ref #8673 add Cascade.Delete and orphanRemoval and handle getter/sett...
Andreas Müller

11/09/2019

06:37 PM Revision 3aa37a25 (cdmlib): ref #8651 remove unnecessary dependency DistributionAggregation in De...
Andreas Müller
06:14 PM Revision d68e1b58 (cdmlib): ref #8651 try to fix failing repository dependency injection in Descr...
Andreas Müller
05:55 PM Revision ade857dd (cdm-vaadin): fix #8673 update Vaadin test DB to CdmLinkSource changes
Andreas Müller
05:54 PM Revision 5e7c747f (taxeditor): fix #8673 update TaxEditor test DB to CdmLinkSource changes
Andreas Müller
05:52 PM Revision 8049524f (cdmlib): ref #8651 try to fix failing repository dependency injection in Descr...
Andreas Müller
05:51 PM Revision b45755b5 (cdmlib): cleanup
Andreas Müller
05:43 PM feature request #8673 (Resolved): Allow OriginalSource to link to other CDM objects
Applied in changeset commit:cdmlib|93ad7e545dc77e63b68e434c62c8560a68bb9dfb. Andreas Müller
12:33 PM feature request #8673 (Closed): Allow OriginalSource to link to other CDM objects
Currently links are only available to Reference and (external) URIs. However, especially for adding sources to aggreg... Andreas Müller
05:41 PM Revision 93ad7e54 (cdmlib): fix #8673 Add CdmLinkSource to OriginalSourceBase
Andreas Müller
01:14 PM Revision 8bbb7d89 (cdmlib): ref #8651 try to fix compile error in DescriptionListController
Andreas Müller
12:42 PM Revision a7e34ddd (cdmlib): cleanup
Andreas Müller
12:41 PM Revision 3bab771f (cdmlib): ref #8651 remove @Service annotation from DistributionAggregation and...
Andreas Müller
12:23 PM feature request #4366 (Feedback): Transmissionengine Distribution: implement rules for source ref...
As this ticket is E+M specific, discusses only specific cases and neglects also to mention discussion from #2625 (att... Andreas Müller
11:40 AM feature request #4366: Transmissionengine Distribution: implement rules for source references
Andreas Kohlbecker wrote:
> Replying to [[comment1|a.kohlbecker]]:
>
> > Hallo Andreas,
>
> >
>
> > dem l...
Andreas Müller
12:17 PM task #8672 (In Progress): Source handling during (distribution) aggregation
There are different possibilities to handle sources during aggregation of factual (distribution and structured descri... Andreas Müller
11:24 AM bug #8670: Unwanted distribution aggregation/display on 2 levels
> NK:
> Frage: wenn in allen Fällen auf Level 3 aggregiert werden muss (**ist das so?**), lässt sich dann nicht weni...
Andreas Müller
10:54 AM task #8671: Distribution in E+M (BM) on different levels
SQL to find such cases in E+M BM:
~~~
SELECT occ.SummaryStatus, n.FullNameCache, pt.PTRefFk, n.NameCache
FROM em...
Andreas Müller
10:08 AM task #8671: Distribution in E+M (BM) on different levels
Eine Lösung für dieses Problem könnte sein, dass man nicht (wie in #8670) die Areale aufwärts aggregiert sondern abwä... Andreas Müller
09:28 AM task #8671 (In Progress): Distribution in E+M (BM) on different levels
We may need to solve the below problem in Euro+Med (Berlin Model) with new functionality in CDM.
=====
AM:
I...
Andreas Müller

11/08/2019

12:29 AM bug #8670: Unwanted distribution aggregation/display on 2 levels
It needs to be decided if this is an aggregation issue or a display (output) issue. Andreas Müller
12:29 AM bug #8670 (Resolved): Unwanted distribution aggregation/display on 2 levels
NK:
Der Schritt der Aggregation auf der Ebene des primären Taxons von level 3 auf level 4 führt:
(a) zu einer un...
Andreas Müller
11:43 PM bug #4134 (Feedback): Transmissionengine Distribution seems to miss distributions for higher Taxa
Das ist für mich nicht logisch. Auch wenn die Aggregation über die Areale auch auf höheren Rangstufen erfolgte (was i... Andreas Müller
10:12 PM bug #8669 (New): Permission problems when caches are updated without permission
The problem is described in #8650 . There a person title had changed and therefore the team titlecache was updated du... Andreas Müller
10:08 PM bug #8650: PermissionDenied Exception for Teams when editing distributions
I remove from milestone as this is a pure data related fix.
We need a new ticket for handling the cache update pro...
Andreas Müller
09:05 PM Revision ed09c048 (cdmlib): cleanup
Andreas Müller
09:05 PM Revision 535525fc (cdmlib): fix #8628 update cdm.map.ser to Person.orcid
Andreas Müller
08:58 PM feature request #8668 (New): Show Person.orcid in dataportal
... but for this we first need an Person or Agent page I guess. So this ticket is blocked.
See https://support.orc...
Andreas Müller
08:56 PM feature request #8667 (Closed): Make Person.orcid editable in TaxEditor
this should be done similar to DOI in Reference class Andreas Müller
08:54 PM bug #8628: Add ORCID as person identifier
This should be fixed now. Please review. Andreas Müller
08:47 PM bug #8628 (Resolved): Add ORCID as person identifier
Applied in changeset commit:cdmlib|6e1b0ff9bdf5c8e20f1df4e5542aa44554252a81. Andreas Müller
08:51 PM Revision 9d0322b2 (cdm-vaadin): fix #8628 update Vaadin test DB to Person.orcid
Andreas Müller
08:50 PM Revision 58a6ce02 (taxeditor): fix #8628 update TaxEditor test DB to Person.orcid
Andreas Müller
08:47 PM Revision 4fb5b361 (cdmlib): cleanup
Andreas Müller
08:46 PM Revision 6e1b0ff9 (cdmlib): fix #8628 add ORCID as person identifier
Andreas Müller
08:43 PM Revision 6119597f (cdmlib): cleanup
Andreas Müller
04:52 PM bug #8666 (New): Login fails if classification can not be loaded
If the sortindex of a root taxon is destroyed the classification can not be loaded.
Loading classification is curr...
Andreas Müller
03:20 PM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors
in context menu Andreas Müller
03:14 PM feature request #8253: Authors for genus autonyms
Very strange, it seems to work with Achnanthes Bory subg. Achnanthes but not with Achnanthes Bory sect. Achnanthes. T... Andreas Müller
02:16 PM feature request #8253: Authors for genus autonyms
Hm, strange, it still doesn't seem to work. Though there is a test with the exact same string "" in NonViralNameParse... Andreas Müller
01:26 PM feature request #8253: Authors for genus autonyms
should be fixed now Andreas Müller
01:24 PM feature request #8253 (Resolved): Authors for genus autonyms
Applied in changeset commit:cdmlib|6ef5a0b16df87d2bd76e8e14cc714cd845f17366. Andreas Müller
12:14 PM feature request #8253: Authors for genus autonyms
OK, the problem is I used parseFullName in NonViralNameParserImplTest. But the editor use parseReferencedName I guess... Andreas Müller
10:49 AM feature request #8253 (Feedback): Authors for genus autonyms
when entering Achnanthes Bory sect. Achnanthes in NameEditor the rank and epithets are not parsed correctly.
The e...
Katja Luther
03:06 PM bug #8429: Rename DeterminationEvent_Reference.setOfReferences_id
Andreas Müller wrote:
> Please review.
Andreas Müller
03:05 PM feature request #8441: Add FeatureState class
Can you still remove? Did you try to remove things? So no orphan-removal issues? Andreas Müller
03:04 PM feature request #8398 (Closed): Add nomenclatural code edition to ruleConsidered
Andreas Kohlbecker wrote:
> excellently implemented, thanks a lot!
>
> I extended the protected constructors in `...
Andreas Müller
02:44 PM feature request #7019 (Feedback): sort import menu
I can't see any difference tried with update and install new version of current nightly.
![](picture714-1.png)
Andreas Müller
12:27 PM feature request #7019 (Resolved): sort import menu
Applied in changeset commit:taxeditor|708b6366b5bba1a1669243d3f7145a1967258e04. Patrick Plitzner
11:42 AM feature request #7019: sort import menu
We decided to use "Specimen online" Andreas Müller
11:07 AM feature request #7019: sort import menu
Andreas Kohlbecker wrote:
> "Specimen (webservice)" still is not a very good label, alternatives are
>
> * "Speci...
Andreas Müller
10:54 AM feature request #7019: sort import menu
"Specimen (webservice)" still is not a very good label, alternatives are
* "Specimen (BioCase)"
* "Specimen (glob...
Andreas Kohlbecker
10:47 AM feature request #7019: sort import menu
For now we could simply use separators in the menu to separate specimen from taxa and those from references etc. But ... Andreas Müller
10:44 AM feature request #7019: sort import menu
Also we should rename "Import Specimen" to "Specimen (webservice)" and ABCD to "ABCD file" to give them a bit more se... Andreas Müller
02:42 PM feature request #8470 (Resolved): Handle username constraints in user and group editing
Applied in changeset commit:taxeditor|a0e1ca0573bdcbd929a27e347010da83a453c93c. Katja Luther
02:00 PM feature request #8470: Handle username constraints in user and group editing
hmm, I think users and groups are special. There names are are unique identifiers and should not be changed anymore. ... Andreas Müller
11:18 AM feature request #8470: Handle username constraints in user and group editing
Another question:
at the moment the user is created and saved immediately, but the group is created and saved when...
Katja Luther
02:42 PM Revision a0e1ca05 (taxeditor): fix #8470: create user/group in creator
Katja Luther
02:19 PM bug #8664: SQLGrammarException when opening Specimen selection
I can't currently review as the accoding DB can't be connected to via TaxEditor at the moment. But code looks ok. I w... Andreas Müller
10:28 AM bug #8664 (Resolved): SQLGrammarException when opening Specimen selection
Patrick Plitzner
01:24 PM Revision 5f582094 (cdmlib): cleanup
Andreas Müller
01:24 PM Revision 6ef5a0b1 (cdmlib): fix #8253 fix problem with infrageneric autonyms full reference parsing
Andreas Müller
01:23 PM Revision dfd3521b (taxeditor): ref #8470: check name by regex before creating
Katja Luther
12:32 PM Revision e4101b39 (taxeditor): fix #7019 fix menu string
Patrick Plitzner
12:27 PM Revision 708b6366 (taxeditor): fix #7019 sort import menu
Patrick Plitzner
11:00 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Müller wrote:
> Can you please leave a note if this is easy to fix? Otherwise please move to new ticket as t...
Katja Luther
10:57 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Can you please leave a note if this is easy to fix? Otherwise please move to new ticket as the layout is not really p... Andreas Müller
10:42 AM Revision 9021b90c (taxeditor): ref #8410: fix NPE
Katja Luther
10:35 AM feature request #8410 (Closed): Add nomenclatural code edition to ruleConsidered in TaxEditor
It looks better now. I think we can close the ticket. Andreas Müller
10:26 AM Revision fab3ab30 (taxeditor): ref #8450 Show data set navigator menu in taxon navigator menu sec...
Patrick Plitzner
10:25 AM Revision 46a006fa (cdmlib): ref #8450 Fix SQLGrammarException when no taxa could be found
Patrick Plitzner
10:20 AM Revision 6448502c (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxedito...
Katja Luther
10:19 AM Revision 739dc887 (taxeditor): ref #8470: exception handling also for groups
Katja Luther
10:04 AM Revision 7bbfb091 (taxeditor): ref #8410: indent only for label -continue
Katja Luther
09:50 AM Revision c127b2b6 (taxeditor): ref #8410: indent only for label
Katja Luther
09:42 AM bug #8632 (Closed): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in...
Katja Luther
09:14 AM feature request #8613 (Closed): For distribution editor default reference should be used also whe...
Seems to work now Andreas Müller

11/07/2019

10:19 PM bug #8664: SQLGrammarException when opening Specimen selection
I guess an empty list was the reason here. Isn't this fixed yet? If not I guess it is very easy to fix and we should ... Andreas Müller
03:56 PM bug #8664 (Closed): SQLGrammarException when opening Specimen selection

… for „Test WorkingSet“ in MatrixEditor

~~~
login : admin
editor version : 5.11.0.201911041248
serve...
Patrick Plitzner
05:12 PM feature request #8613 (Resolved): For distribution editor default reference should be used also w...
Katja Luther wrote:
> Andreas Müller wrote:
> > It still does not work if a source existed already before opening t...
Katja Luther
05:00 PM feature request #8613 (In Progress): For distribution editor default reference should be used als...
Andreas Müller wrote:
> It still does not work if a source existed already before opening the DistrEditor for the gi...
Katja Luther
03:43 PM feature request #8613 (Feedback): For distribution editor default reference should be used also w...
It still does not work if a source existed already before opening the DistrEditor for the given record. Please test i... Andreas Müller
09:10 AM feature request #8613 (Resolved): For distribution editor default reference should be used also w...
Andreas Müller wrote:
> Does not work for me yet. The reference field is still empty if I selected a base source and...
Katja Luther
05:11 PM Revision ca9d00b6 (taxeditor): ref #8613: send event to update details view when set default source
Katja Luther
03:55 PM bug #8663 (Duplicate): LIE when trying to save a tree node

I tried to edit “Character Tree Test”-“second test structure third property” node in Character node editor.
Befo...
Patrick Plitzner
03:53 PM bug #8662 (Closed): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon i...
… im Taxon filter als Kontextmenü. Auch wenn noch gar kein Taxon dort angezeigt wird.

Auch wenn Taxa existier...
Patrick Plitzner
03:52 PM feature request #8661 (Closed): "New DataSet" should ask for label and then open the dataset
… im Descriptive Data Set Navigator sollte den Descriptive Data Set Editor öffnen, damit das Dataset oder zumindest s... Patrick Plitzner
03:51 PM feature request #8642 (Closed): Add tree editor for rank, NamedArea and PresenceAbsence
Generic term tree menu creation moved to new ticket #8660. Also handling of not allowed duplicates #8655.
Close th...
Andreas Müller
10:24 AM feature request #8642 (Resolved): Add tree editor for rank, NamedArea and PresenceAbsence
Order is fixed.
Create new ticket for remaining issues -> #8655
Patrick Plitzner
03:50 PM bug #8660 (New): Generic menu creation for Term trees
Currently the term tree menu is hardcoded. It should be implemented generically as the term (vocabulary) menu.
Thi...
Andreas Müller
03:46 PM feature request #8648 (Closed): Simplify name details view configuration
Works as expected now. Andreas Müller
03:40 PM feature request #8470 (Feedback): Handle username constraints in user and group editing
Please also implement for groups. Andreas Müller
03:39 PM Revision 55236f7f (cdm-dataportal): ref #8596 harmonizing documentation
Andreas Kohlbecker
03:37 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
I don't insist in keeping this function in the ABCD import. I only feared that we lose valuable functionality. theref... Andreas Kohlbecker
03:27 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
I suggest to close this ticket and if needed open a new ticket to discuss the necessity (and best implementation) of ... Andreas Müller
03:09 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
As mentioned by Katja before I do not understand why we need it. It is work to keep such things running and as Katjas... Andreas Müller
01:51 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Katja Luther wrote:
...
> ... But when the problems solved we can reintegrate it to the file import. It is only...
Andreas Kohlbecker
01:33 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Kohlbecker wrote:
> Katja Luther wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
> > >...
Katja Luther
01:23 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > Andreas Kohlbecker wrote:
> > >...
Andreas Kohlbecker
01:14 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
>...
Katja Luther
01:05 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Patrick Plitzner wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > We used the specimen search ...
Andreas Kohlbecker
12:39 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > We used the specimen search for DNA in the Taxeditor. This ...
Patrick Plitzner
11:49 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Müller wrote:
> why did you give this to Lutz? I guess this was a mistake?
OOPS! Thank you for fixing this.
Andreas Kohlbecker
11:47 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
why did you give this to Lutz? I guess this was a mistake? Andreas Müller
11:30 AM bug #8632 (Feedback): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected ...
Andreas Kohlbecker
11:28 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Patrick Plitzner wrote:
> We used the specimen search for DNA in the Taxeditor. This still works so no problems from...
Andreas Kohlbecker
10:13 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
So AK, you may decide if this ticket can be fully closed. But I guess so. Andreas Müller
10:05 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
We used the specimen search for DNA in the Taxeditor. This still works so no problems from my side Patrick Plitzner
03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
Andreas Kohlbecker wrote:
> There is still a problem related to this issue.
>
> The TaxonNavigator is not being r...
Andreas Müller
03:22 PM bug #8659 (New): Taxon navigator: not refreshed after ABCD file import
Copied from #8582
The TaxonNavigator is not being refreshed after importing an ABCD file, newly created classifica...
Andreas Müller
03:19 PM feature request #8596 (Closed): Add a list of descriptions to the taxon page
Patrick Plitzner
01:48 PM feature request #8596: Add a list of descriptions to the taxon page
from my perspective can this ticket be closed. Andreas Kohlbecker
01:46 PM feature request #8596: Add a list of descriptions to the taxon page
Patrick Plitzner wrote:
> Andreas K.: You mentioned that it is possible to assign **weights** to these blocks. Wit...
Andreas Kohlbecker
12:36 PM feature request #8596: Add a list of descriptions to the taxon page
But the tree that I mentioned can be used for both the block here and for the "description detail page" (#8595) Andreas Müller
12:34 PM feature request #8596: Add a list of descriptions to the taxon page
Patrick Plitzner wrote:
> Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here...
Andreas Müller
12:30 PM feature request #8596: Add a list of descriptions to the taxon page
Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here. Just about the order of T... Patrick Plitzner
12:09 PM feature request #8596: Add a list of descriptions to the taxon page
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> Can you please explain this a bit more? Is there a Feature tr...
Andreas Müller
11:57 AM feature request #8596: Add a list of descriptions to the taxon page
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Do we need a configuration method to define the "Description ...
Andreas Müller
11:45 AM feature request #8596: Add a list of descriptions to the taxon page
Andreas Müller wrote:
> Do we need a configuration method to define the "Description (aggregated)" feature tree? Oth...
Andreas Kohlbecker
09:39 AM feature request #8596: Add a list of descriptions to the taxon page
Do we need a configuration method to define the "Description (aggregated)" feature tree? Otherwise it seems to be imp... Andreas Müller
09:22 AM feature request #8596: Add a list of descriptions to the taxon page
Currently only the aggregated descriptions are shown.
What still needs to be implemented is the sort order of this...
Patrick Plitzner
03:18 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
should we put back to "In Progress" or/and move to next milestone? Andreas Müller
12:52 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
after applying the jdk8 memleak fix the effect on the cdm-server is not as good as for the cdmlib-remote-webapp alone... Andreas Kohlbecker
02:32 PM feature request #8595: Create description detail page
Code review notes:
* description.inc#1179 : `$enclosing_tag = cdm_feature_block_element_tag_name($feature_block_se...
Andreas Kohlbecker
12:46 PM feature request #8595: Create description detail page
Added specs from additivity wiki Patrick Plitzner
12:05 PM feature request #8595: Create description detail page
There are still many open issues (most of them discussed in additivity). So we need a follow up ticket. This ticket a... Andreas Müller
11:38 AM feature request #8595 (Feedback): Create description detail page
It is hard to review this ticket since the requirements to the layout of the page are missing in the ticket. Please a... Andreas Kohlbecker
09:20 AM feature request #8595: Create description detail page
Example: http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/description/dc871867-3d87-4fce-b42... Patrick Plitzner
01:34 PM Revision 93666c75 (cdm-dataportal): ref #8596 changing render hint
Andreas Kohlbecker
01:12 PM Revision 0152a834 (cdm-dataportal): adding annotation to doc
Andreas Kohlbecker
01:09 PM bug #8605 (Worksforme): ClassCastException in Feature editor when adding new Defined Term
I can't reproduce this either, so it seems as if this has been fixed in the context of another task Andreas Kohlbecker
11:34 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term
I tested this with the latest nightly on the mentioned database but could not reproduce this behavior. Patrick Plitzner
12:41 PM bug #8225: Deleting one of two type designations removes both
Andreas Müller wrote:
> I change back version as the preliminary fix was done in 5.6 I think. OK?
+1
Patrick Plitzner
10:16 AM bug #8225: Deleting one of two type designations removes both
I change back version as the preliminary fix was done in 5.6 I think. OK? Andreas Müller
10:10 AM bug #8225 (Closed): Deleting one of two type designations removes both
Created a new ticket for a better fix -> #8654 Patrick Plitzner
12:32 PM feature request #8657 (Closed): Order description element in portal according to CharacterTree
Patrick Plitzner
12:13 PM feature request #8656 (Closed): [DISCUSS] Should only characters be allowed for DescriptiveDataSe...
du filterst in aggregateDescription() nur DescriptionElements die Characters als Feature haben. Das
~~~java
desc...
Patrick Plitzner
11:35 AM feature request #8044 (Resolved): Add "Move to..." menu to term editor
Patrick Plitzner
11:15 AM bug #7143 (Closed): Finish not enabled when unprotecting titleCache in new Person dialog
confirmed! Andreas Kohlbecker
09:08 AM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
this is fixed now. Katja Luther
11:09 AM feature request #8238: Allow interoperability between term trees
Moving to next milestone for remaining issues Patrick Plitzner
10:58 AM feature request #6849 (In Progress): [DISCUSS] How to handle "kind of" term creation in TermEditor
Patrick Plitzner
10:21 AM feature request #6849 (Closed): [DISCUSS] How to handle "kind of" term creation in TermEditor
Closing this old discussion because the project ends. Documentation can be found in the ticket description and in the... Patrick Plitzner
10:51 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
Dump deleted as it was not crucial to understand the problem.
Andreas Kohlbecker
10:37 AM feature request #8467: Save a "snapshot" of the SpecimenDescriptions used for aggregation
moving to additivitiy milestone Patrick Plitzner
10:36 AM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
moving to additivitiy milestone Patrick Plitzner
10:23 AM feature request #8655 (Duplicate): Handle duplicates in term tree editor
Copied from #8642:
There is one related issue: if you create a new tree, by default "allow duplicates" is false, w...
Patrick Plitzner
10:22 AM bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model ...
moving to next milestone Patrick Plitzner
10:10 AM task #8130: Check if related feature data is cleared when supported facts type is changed
Move to next milestone for remaining discussion Patrick Plitzner
10:09 AM bug #8654 (New): Find a better solution for deleting type designations
Follow up of #8225 Patrick Plitzner
10:07 AM feature request #6774: Implement OWL export
Move to next milestone because this is still considered experimental Patrick Plitzner
10:06 AM feature request #8248: Implement OWL import
Move to next milestone because this is still considered experimental Patrick Plitzner
09:58 AM bug #8533 (Closed): missing collector and fieldnumber in abcd import
> Why did you move it to 5.12. It has status resolved and should therefore be reviewed in 5.11 milestone. If there is... Patrick Plitzner
08:57 AM Revision bbe6c98f (cdm-server): ref #5048 disabling url caching per instance for jdk1.8 to avoid ...
Andreas Kohlbecker

11/06/2019

10:57 PM feature request #8253: Authors for genus autonyms
Please review Andreas Müller
10:34 PM feature request #8253 (Resolved): Authors for genus autonyms
Applied in changeset commit:cdmlib|6d023e406becd840d1d95a88137f1bccb4a73eed. Andreas Müller
10:34 PM Revision b06c96cf (cdmlib): cleanup
Andreas Müller
10:34 PM Revision 6d023e40 (cdmlib): fix #8253 correct parsing and formatting for authors of infra generic...
Andreas Müller
10:09 PM Revision 09a3e42c (cdmlib): cleanup
Andreas Müller
10:06 PM Revision 029fa839 (cdmlib): cleanup
Andreas Müller
06:13 PM bug #5048 (Resolved): cdm-server causes unusual high native memory consumption for jvm
Applied in changeset commit:cdm-server|d81181d86f476634377346f159ea9edcda67ba38. Andreas Kohlbecker
06:08 PM bug #5048 (In Progress): cdm-server causes unusual high native memory consumption for jvm
Andreas Kohlbecker wrote:
> I will now equip edit-test and edit-integration with the caches.xml workaround to disabl...
Andreas Kohlbecker
05:20 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
I will now equip edit-test and edit-integration with the caches.xml workaround to disable url caching... Andreas Kohlbecker
06:13 PM Revision d81181d8 (cdm-server): fix #5048 disabling url caching for jdk1.8 to avoid memleak
Andreas Kohlbecker
05:06 PM Revision 84503131 (taxeditor): ref #8450 Adjust style of literature description to default descri...
Patrick Plitzner
04:03 PM Revision 2cace77b (taxeditor): ref #7143: fix activation of finish button
Katja Luther
03:53 PM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
I would expect that the finish button is enabled after entering text in the TitleCache field only.
This is not y...
Andreas Kohlbecker
03:46 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > * The "Configure Import Dialog" has changed, and has two issues...
Andreas Kohlbecker
03:31 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Katja Luther wrote:
> the nomenclatural code selection page is removed
Did you add a label to the code selection ...
Andreas Kohlbecker
03:17 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > There are still some problems which are not yet fixed:
> >
>...
Katja Luther
03:04 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Kohlbecker wrote:
> There are still some problems which are not yet fixed:
>
> * the taxon is not part of...
Katja Luther
03:02 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
the nomenclatural code selection page is removed Katja Luther
02:57 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Kohlbecker wrote:
> There are still some problems which are not yet fixed:
>
> * the taxon is not part of...
Katja Luther
09:23 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
There are still some problems which are not yet fixed:
* the taxon is not part of the classification.
* the speci...
Andreas Kohlbecker
03:02 PM Revision 21850e02 (taxeditor): ref #8631: remove nomenclatural code selection page for file import
Katja Luther
02:54 PM task #8652 (Closed): disentangle confusion when connecting to development cdm instance fails
Katja Luther
02:51 PM task #8652: disentangle confusion when connecting to development cdm instance fails
Andreas Kohlbecker wrote:
> apparently these changes are not causing problems.
>
> @Katja: I think the changes th...
Katja Luther
08:57 AM task #8652: disentangle confusion when connecting to development cdm instance fails
apparently these changes are not causing problems.
@Katja: I think the changes that I made to `ExtReferenceSelecti...
Andreas Kohlbecker
02:49 PM feature request #8648 (Resolved): Simplify name details view configuration
default handling is fixed now and labeling is changed as well. Katja Luther
02:13 PM Revision 161cf0e4 (taxeditor): show report for abcd file import
Katja Luther
01:26 PM Revision b5394068 (cdmlib): adding jvmArgs to the maven jetty plugin config to allow for hasslefr...
Andreas Kohlbecker
01:19 PM Revision 6c8d17c5 (taxeditor): ref #8470: export ConstraintViolationException
Katja Luther
01:06 PM feature request #8454 (Closed): Only allow certain patterns as username and groupname
tested it in Editor and it seems to work (tested ' ', 'ö', '*') Katja Luther
01:03 PM feature request #8470 (Resolved): Handle username constraints in user and group editing
Applied in changeset commit:taxeditor|2579d7d6b01fd0879bee9ab3a7621fbe8aec1009. Katja Luther
01:03 PM Revision 2579d7d6 (taxeditor): fix #8470: handle constraint violation exception for username
Katja Luther
12:14 PM Revision 0c9b9bc2 (taxeditor): ref #8450 Fix order of taxon descriptions in matrix
Patrick Plitzner
11:52 AM Revision ed2341ee (cdmlib): ref #8450 Remove description type labels
Patrick Plitzner
11:03 AM Revision 99310e0d (taxeditor): ref #8648: default handling in name details preference - continue
Katja Luther
10:42 AM Revision 37cff480 (taxeditor): ref #8648: default handling in name details preference
Katja Luther
10:20 AM bug #8653 (Resolved): NullPointerException (NPE) when focusing Taxion Name Editor
Katja Luther
10:18 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
Please remove milestone afterwards. It is an milestone internal bugfix. Andreas Müller
10:17 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
As far as I can see this came with one of the latest changes. Should be easy to fix. Important before release. Andreas Müller
09:42 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
Attaching dump of the DB: attachment.cdm_caryophyllales_demo_01.sql.bz2 Andreas Kohlbecker
09:35 AM bug #8653 (Resolved): NullPointerException (NPE) when focusing Taxion Name Editor
* I did the same ABCD import of `Arenaria_ABCD_one_unit.xml`
three times
* Then search for Arenaria serpyllifoli*
...
Andreas Kohlbecker
10:19 AM Revision 00a7ae7a (taxeditor): ref #8648: set default for local, label issues
Katja Luther
10:14 AM Revision d2e01dec (taxeditor): ref #8653: fix NPE
Katja Luther
09:29 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
The question in comment 4 is for Patrick, so I am reassigning this ticket Andreas Kohlbecker
09:27 AM bug #8582 (In Progress): Taxon Navigator: Classification label not refreshed & new taxa not visible
There is still a problem related to this issue.
The TaxonNavigator is not being refreshed after importing an ABCD ...
Andreas Kohlbecker
09:18 AM bug #8650 (Closed): PermissionDenied Exception for Teams when editing distributions
this seems to be a problem of updated caches because of the IPNI import. After running the cache updater the problem ... Katja Luther
09:12 AM bug #8630 (Closed): ClassCastException when ABCD import has finished
The problem is no longer reproducible, closing the issue. Andreas Kohlbecker
09:09 AM bug #8634 (Closed): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator(...
could no longer reproduce the issue, closing the ticket. Andreas Kohlbecker

11/05/2019

05:39 PM Revision 7ef0f93e (cdmlib): ref #8651 rename TransmissionEngineDistribution to DistributionAggreg...
Andreas Müller
05:14 PM Revision ac2cee48 (cdmlib): ref #8651 fix compile error on linux (3rd try)
Andreas Müller
05:07 PM Revision b997cab9 (cdmlib): ref #8651 minor changes to TransmissionEngineDistribution and moving ...
Andreas Müller
05:02 PM Revision 753627ae (cdmlib): ref #8651 fix compile error on linux (2nd try)
Andreas Müller
04:54 PM task #8652 (Resolved): disentangle confusion when connecting to development cdm instance fails
Applied in changeset commit:taxeditor|2456bd7d10249f074c710ec82344610ec9226b5e. Andreas Kohlbecker
04:53 PM task #8652 (Closed): disentangle confusion when connecting to development cdm instance fails
It can be quite cumbersome to find the cause when connecting to a development cdm instance fails.
To connect this wa...
Andreas Kohlbecker
04:54 PM Revision 2456bd7d (taxeditor): fix #8652 cleaning code related to system property cdm.server.dev....
Andreas Kohlbecker
04:51 PM Revision 8b518049 (cdmlib): ref #8651 fix compile error on linux
Andreas Müller
04:39 PM feature request #8613 (Feedback): For distribution editor default reference should be used also w...
Does not work for me yet. The reference field is still empty if I selected a base source and then added a new source.... Andreas Müller
10:00 AM feature request #8613 (Resolved): For distribution editor default reference should be used also w...
this is implemented, please review Katja Luther
04:36 PM feature request #8648: Simplify name details view configuration
Minor issue: can you rename the menu label in DB prefs from "Name Details View" to "Details View". From the given con... Andreas Müller
04:34 PM feature request #8648 (Feedback): Simplify name details view configuration
"Simple Name Details View" have been renamed as expected.
Also removing the field "Show simplified name detials vi...
Andreas Müller
11:35 AM feature request #8648 (Resolved): Simplify name details view configuration
Applied in changeset commit:taxeditor|b99d2118937199a57d8b4907a76eba41de08ed82. Katja Luther
11:24 AM feature request #8648 (Closed): Simplify name details view configuration
mail AM:
Hallo Katja,

ich frage mich gerade, ob wir das Dropdown Feld „Show simplified name detials view with ...
Katja Luther
04:26 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Now the indentation is for both the label and the textfield. but I think for the label it is enough. Otherwise the la... Andreas Müller
04:22 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
The list should always show an empty entry to make it possible to delete the field. Andreas Müller
04:21 PM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
I tried to change the nom code ICNAFP to ICZN for a name but the list did not change even after reopening the taxon. Andreas Müller
01:42 PM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
sorry, the last changes were not pushed, now they are available in the actual nightly build.
the combo box is fill...
Katja Luther
04:21 PM Revision 27b19ff5 (taxeditor): ref #8450 Show description type icons in factual data view
pplitzner
04:21 PM Revision 34ec2ac2 (cdmlib): Fix potential NPE
pplitzner
04:09 PM Revision 771a5159 (cdmlib): cleanup
Andreas Müller
04:09 PM Revision 7c5cb694 (cdmlib): ref #8651 first base classes for unified description aggregation and ...
Andreas Müller
04:07 PM task #8651 (Closed): Unify description aggregation methods (distribution and structured descripti...
Currentyl we have at least 2 methods/classes handling description aggregation, 1 for distribution data called Transmi... Andreas Müller
03:14 PM bug #8650 (Closed): PermissionDenied Exception for Teams when editing distributions
mail of JP:
Hallo Katja, heute bekomme ich ständig diese Fehlermeldung, woran könnte das liegen? Liebe Grüße Jonat...
Katja Luther
03:12 PM bug #8533: missing collector and fieldnumber in abcd import
Why did you move it to 5.12. It has status resolved and should therefore be reviewed in 5.11 milestone. If there is a... Andreas Müller
02:06 PM bug #8498 (In Progress): Set Flags should show the current status of the flags
as we closed #8282, we can use this ticket to find out why there is a delay between setting the flag and getting the ... Katja Luther
02:04 PM feature request #8486 (Closed): Indicating doubtful state in navigator and add set-doubtful to Se...
Katja Luther
01:56 PM bug #8584 (Closed): Appended phrase should be shown on top level for misapplied names
created new ticket for the layout issues (#8649) and close this ticket Katja Luther
01:54 PM feature request #8649 (New): Layout issues for misapplied name/pro parte synonyms
Some open minor issues (open new ticket if not immediately fixable):
* Add identation (whitespace at beginning) f...
Katja Luther
01:52 PM bug #8531: factual data and media view always opened when opening taxon
this is fixed.
Last problem is when the facts view is closed while the distribution editor is already open, then t...
Katja Luther
01:49 PM feature request #8572 (Closed): Rule considered configurable
Katja Luther
01:47 PM feature request #8624 (In Progress): Add abbrev title cache to search in bulk editor
Katja Luther
01:46 PM bug #8626 (Duplicate): NullPointerException (NPE) on saving Specimen Editor (list)
I could not reproduce the problem, but I still keep #7699, so I close this as duplicate Katja Luther
01:44 PM bug #8631 (Resolved): ABCD import fails to put new taxa into the classification, create mediaspec...
Katja Luther
01:41 PM Revision 37811f53 (taxeditor): ref #8410: add only nomenclatural code editions for code of name t...
Katja Luther
01:39 PM Revision b03087a0 (cdmlib): Fix class cast for streams in aggregation
Patrick Plitzner
01:27 PM Revision 6f4ce4b3 (taxeditor): reopen factual data and media view for taxa when opened before
Katja Luther
01:25 PM bug #8622 (Resolved): Missing specimen Identifier leads to empty brackets in portal
Patrick Plitzner
01:25 PM feature request #8596 (Resolved): Add a list of descriptions to the taxon page
Patrick Plitzner
01:25 PM feature request #8467 (Resolved): Save a "snapshot" of the SpecimenDescriptions used for aggregation
Patrick Plitzner
01:24 PM feature request #8625 (Closed): Add count parameter to StateData
This is already used in the aggregation algorithm and works fine Patrick Plitzner
01:21 PM feature request #8595 (Resolved): Create description detail page
Patrick Plitzner
12:42 PM feature request #5873: Implement rights&roles for TaxEditor distribution editor
I reverted some of the changes because it worked only if the user had rights on a subtree. so move the ticket to 5.12 Katja Luther
12:32 PM Revision 8e675e6a (taxeditor): ref #8239: revert some of the implementations for the next release
Katja Luther
11:34 AM Revision b99d2118 (taxeditor): fix #8648: simplify name details view
Katja Luther
11:34 AM Revision 4963861e (taxeditor): ref #8634: fix NPE and biocase provider for dna search
Katja Luther
10:30 AM Revision 7f287710 (cdmlib): cleanup
Andreas Müller
10:21 AM bug #7143 (Resolved): Finish not enabled when unprotecting titleCache in new Person dialog
Katja Luther wrote:
> Andreas Kohlbecker wrote:
>
> With the actual nightly I cannot reproduce this problem anymo...
Andreas Kohlbecker
10:09 AM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
Andreas Kohlbecker wrote:
> Finish is not enabled when only the title cache is filled with data.
>
> Even after e...
Katja Luther
10:07 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Patrick, can you please check if the DNA search is somehow needed in additivity context? I don't expect it but just t... Andreas Müller
09:13 AM bug #8632 (Resolved): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected ...
I removed the possibility to search for DNA for the abcd import because it created exceptions during save and it was ... Katja Luther
09:59 AM Revision 5548f6bc (cdm-dataportal): ref #8595 Fix compile error
Patrick Plitzner
09:56 AM bug #8634 (Resolved): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurato...
this is fixed Katja Luther
09:53 AM Revision 18110d8c (cdm-dataportal): ref #8595 Fix compile error
Patrick Plitzner
09:39 AM Revision d61e49ac (cdm-dataportal): ref #8595 Show specimen titleCache for source descriptions
Patrick Plitzner
09:24 AM Revision 074747bf (cdm-dataportal): ref #8595 Show characters in italic instead of bold
Patrick Plitzner
09:05 AM Revision 1601d218 (cdm-dataportal): ref #8595 Change header label for aggr. descriptions
Patrick Plitzner
09:01 AM bug #8630 (Resolved): ClassCastException when ABCD import has finished
this is fixed. Katja Luther

11/04/2019

10:06 PM Revision 14e5960f (cdmlib): cleanup
Andreas Müller
10:06 PM Revision 0668c27e (cdmlib): better exception handling in MethodMapper
Andreas Müller
06:31 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
a single cdmlib-remote-webapp instance started from within the eclipse ide:
* RSS: 1297,05078125 MB
* heap used:...
Andreas Kohlbecker
06:07 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
timeseries monitoring of the cdm-server running at edit-test with 6 instances:
![](picture464-1.png)
This diagr...
Andreas Kohlbecker
06:16 PM bug #8633: version 5.11 can not connect to workshop servers
As this was only preliminary in 5.11 beta I remove target version Andreas Müller
06:08 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > One more requirement I forgot to mention before:
> >
> > T...
Andreas Müller
03:35 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Müller wrote:
> One more requirement I forgot to mention before:
>
> The list should show only those code...
Andreas Kohlbecker
02:54 PM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
One more requirement I forgot to mention before:
The list should show only those codes which fit to the nomenclatu...
Andreas Müller
02:50 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > Works!
> >
> > Only some layout issues:
> >
> > * ~~Please a...
Andreas Müller
12:48 PM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
Katja Luther
12:05 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Müller wrote:
> Works!
>
> Only some layout issues:
>
> * ~~Please add identation to label to make cl...
Katja Luther
06:05 PM bug #8626 (Feedback): NullPointerException (NPE) on saving Specimen Editor (list)
I guess we can close this as Duplicate for #7699 (or as Workforme if you don't think #7699 is correct). Please remov... Andreas Müller
03:08 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
I remember that it was possible to reproduce this problem on the day when I wrote this ticket. Today, however, the pr... Andreas Kohlbecker
05:48 PM feature request #8647 (New): Allow selecting named areas, ranks, presence-absence terms from term...
It is possible now to create term trees for Named Areas, Presence-Absence-Terms and Ranks (and ofcourse Features).
...
Andreas Müller
04:31 PM bug #8610 (Closed): tagged_text_extract_nomstatus() fails handling more than one status
Andreas Kohlbecker
04:31 PM bug #8610: tagged_text_extract_nomstatus() fails handling more than one status
=Labiatae Juss., Gen. Pl.: 110. 1789, nom. cons.2, nom. altern.2
is now being displayed correctly in the data port...
Andreas Kohlbecker
04:15 PM bug #7143 (Feedback): Finish not enabled when unprotecting titleCache in new Person dialog
Finish is not enabled when only the title cache is filled with data.
Even after entering the family name it still ...
Andreas Kohlbecker
04:08 PM bug #8605: ClassCastException in Feature editor when adding new Defined Term
I extended the ticket descriptions to clarify what I did Andreas Kohlbecker
04:03 PM Revision 4b428921 (cdm-dataportal): ref #8595 Show count for StateData + only show data when stat...
Patrick Plitzner
03:58 PM bug #8374: Save genus generated for a species with a different reference
removed version as this is a duplicate Andreas Müller
03:44 PM feature request #8226 (Closed): make modifiers for description elements configurable
Yes, this works now (except for the issue to be solved in #8236, but this is another ticket) Andreas Müller
10:49 AM feature request #8226 (Resolved): make modifiers for description elements configurable
now it should work. Katja Luther
03:33 PM Revision 879048dd (taxeditor): ref #8642 Change menu oder for tree editors
Patrick Plitzner
03:33 PM feature request #8572 (Feedback): Rule considered configurable
Personally I would give even more indentation (see #8572#note-8). But this is up to you.
Generally we can close th...
Andreas Müller
01:39 PM feature request #8572 (Resolved): Rule considered configurable
I think all open issues are fixed.
* sub preference have more indent
* the label for "Secundum enabled..." is ful...
Katja Luther
03:24 PM feature request #8642 (Feedback): Add tree editor for rank, NamedArea and PresenceAbsence
Generally works. Menu order please like discussed with Feature and Named Area on top, separator, PresenceAbsence, Ran... Andreas Müller
03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
Refreshing obviously is working again. Thanks for fixing. Andreas Kohlbecker
02:38 PM bug #8639: Reorder Names in Preferences
Andreas Kohlbecker wrote:
> I would prefer seeing these entries in alphabetical order.
Alphabetical order is the...
Andreas Müller
01:21 PM bug #8639: Reorder Names in Preferences
I would prefer seeing these entries in alphabetical order.
For me the new suggestion is harder to comprehend than...
Andreas Kohlbecker
02:02 PM Revision 0b52ae5c (cdmlib): revert changes in abcd import test
Katja Luther
01:39 PM Revision 064a8014 (taxeditor): ref #8450 Fix initial expansion state when refreshing matrix
pplitzner
01:37 PM Revision 2d931a85 (cdmlib): ref #8450 Display StateData.count if present
pplitzner
01:36 PM task #8466 (Closed): Delete FeatureTree tables
Andreas Müller
01:22 PM Revision 54c2a6e5 (taxeditor): ref #8572: some more indention for sub preferences
Katja Luther
01:18 PM Revision 5006c242 (taxeditor): ref #8572: rule considered and code edition enable/disable in pref...
Katja Luther
12:57 PM Revision 9b17d62b (taxeditor): layout issues in name details view preference
Katja Luther
12:48 PM Revision 25364108 (taxeditor): ref #8410: add indent to code edition
Katja Luther
10:57 AM bug #8645: rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
Also Term Tree is not the really correct label as the import is for importing the whole ontology for structured descr... Andreas Müller
10:48 AM Revision 6e9bf931 (taxeditor): ref #8226: fix show modifier
Katja Luther
08:47 AM Revision 29b04663 (cdmlib): minor refactoring
pplitzner

11/03/2019

01:36 PM Revision 6cb0766e (cdmlib-apps): ref #8643 multiple changes to adapt FauEuPesiExport to current s...
Andreas Müller

11/02/2019

10:26 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
The diagnosis method described in this article may help analyzing the problem: https://technology.blog.gov.uk/2015/12... Andreas Kohlbecker
05:44 PM bug #8646: Character Details View should provide more information on the structure and property t...
This could be done
a. by extending the label by this information or
b. by showing an infobox when hovering ove...
Andreas Kohlbecker
05:37 PM bug #8646 (New): Character Details View should provide more information on the structure and prop...
It should be possible the get more information on the structure and property term which make up the Character
![]...
Andreas Kohlbecker
05:27 PM bug #8645 (Closed): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
This import function is not a general OWL import.
The information on the nature of the data to be imported must be m...
Andreas Kohlbecker

11/01/2019

05:32 PM task #8644 (New): [PESI][FE] Verify FauEu PESI export
Andreas Müller
05:26 PM feature request #8643 (In Progress): [PESI][FE] Adpat new PESI export to FE requirements
Andreas Müller
05:24 PM feature request #8643 (In Progress): [PESI][FE] Adpat new PESI export to FE requirements
PESI export has changed. FE export still needs to be adapted to these changes Andreas Müller
05:25 PM Revision 0d988e0a (cdmlib-apps): ref #8643 adapt PesiExportActivatorFE to current state
Andreas Müller
05:10 PM Revision bb4d8757 (cdmlib-apps): cleanup
Andreas Müller
05:05 PM Revision 446b1e61 (cdmlib): ref #8450 Set "count" when aggregating StateData
Patrick Plitzner
04:45 PM Revision 882e2c02 (cdm-dataportal): ref #8595 Show aggregation description elements on taxon page
Patrick Plitzner
03:07 PM Revision caacf65b (taxeditor): adapt TaxEditor Test-H2 to model changes v5.11
Andreas Müller
03:06 PM Revision c6865762 (cdm-vaadin): adapt vaadin Test-H2 to model changes v5.11
Andreas Müller
02:55 PM feature request #8642 (Resolved): Add tree editor for rank, NamedArea and PresenceAbsence
Applied in changeset commit:taxeditor|43fdbc98815ef71a54c68fe96a11ea189355accc. Patrick Plitzner
02:52 PM feature request #8642 (Closed): Add tree editor for rank, NamedArea and PresenceAbsence
Patrick Plitzner
02:53 PM Revision 43fdbc98 (taxeditor): fix #8642 Add tree editor for rank, NamedArea and PresenceAbsence
Patrick Plitzner
02:43 PM task #8466 (Resolved): Delete FeatureTree tables
Applied in changeset commit:cdmlib|74b86998eb26eb3fe74b837048f1aa9b1f0b9d3b. Andreas Müller
02:43 PM feature request #8625 (Resolved): Add count parameter to StateData
Applied in changeset commit:cdmlib|320e07b697daddc4133325fdea62ca414e0e582e. Andreas Müller
02:26 PM Revision 5f0a3093 (cdmlib): update H2 test data and model cache
Andreas Müller
02:20 PM Revision 3a1e8815 (cdmlib): cleanup
Andreas Müller
02:10 PM Revision d7c686f4 (cdmlib): ref #8625 add count to StateData to FullCoverageDataGenerator
Andreas Müller
01:28 PM Revision 74b86998 (cdmlib): fix #8466 remove old FeatureTree tables
Andreas Müller
01:27 PM Revision 748cefc1 (cdmlib): cleanup
Andreas Müller
01:26 PM Revision 320e07b6 (cdmlib): fix #8625 add count to StateData
Andreas Müller
12:32 PM Revision 2b8a30e9 (cdmlib): move categorical data up in StateData and cleanup
Andreas Müller
12:11 PM Revision bd074233 (cdmlib): some cleanup for TransmissionEngineDistribution
Andreas Müller
12:10 PM Revision 0ced6c29 (cdmlib): cleanup
Andreas Müller
11:52 AM bug #8582: Taxon Navigator: Classification label not refreshed & new taxa not visible
I guess this should be reviewed. Andreas Müller
11:51 AM bug #8641: IAE (IllegalArgumentException) when exchanging name in taxon details view
It happened when I tried to deduplicate some names in E+M after the IPNI 2019 import Andreas Müller
11:50 AM bug #8641 (New): IAE (IllegalArgumentException) when exchanging name in taxon details view
beim Austausch eines Namens für ein Taxon (also Wiederverwendung von Namen) bekomme ich regelmäßig (aber längst nicht... Andreas Müller
11:43 AM task #8609 (Closed): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
This seems to be fixed and can be closed.
Please reopen if some task is still left.
Andreas Müller
11:38 AM bug #8622 (Feedback): Missing specimen Identifier leads to empty brackets in portal
I will review after release on publication dataportal.
Can you please still add the link to the relevant portal si...
Andreas Müller
11:30 AM feature request #7457 (Closed): E+M: Allow filtering for only published in search
Seems to work.
Note: maybe we also need something like "Only unpublished", but this is another issue and needs an ...
Andreas Müller
11:24 AM bug #8640 (New): Specimen preferences should be disabled if specimens are generally switched off
If "Show specimen related views and menu entries" is switched off the other preferences should be disabled as they pr... Andreas Müller
11:19 AM feature request #8226 (Feedback): make modifiers for description elements configurable
Does not seem to work. If I have all switched on the modifiers do stil not show up. Andreas Müller
11:13 AM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Müller
10:57 AM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Works!
Only some layout issues:
* Please add identation to label to make clear belongs and depends on state of...
Andreas Müller
11:13 AM feature request #8486 (Feedback): Indicating doubtful state in navigator and add set-doubtful to ...
Sometimes I realized that the menu only synchronizes after some time. So if I swith from doubtful to not doubful and ... Andreas Müller
11:08 AM feature request #8486: Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
Katja Luther wrote:
> now doubtful is "??", unplaced "?"
I think it is the other way round. But probably it is be...
Andreas Müller
10:49 AM feature request #8568 (Closed): improve performance for term and vocabulary preference pages
Performance is still not really fast sometimes but definetely acceptable for (seldom used) preferences. So we can clo... Andreas Müller
10:12 AM bug #8639 (New): Reorder Names in Preferences
Currently the order is
* Nomenclatural Code
* Nomenclatural Status
* Ranks
* Type Designations
* Name De...
Andreas Müller
10:03 AM feature request #8572: Rule considered configurable
Andreas Müller wrote:
> Please have some more identation for the sub-preferences on the name details view. Currently...
Andreas Müller
09:56 AM feature request #8572: Rule considered configurable
Andreas Müller wrote:
> The filtering does not work! Neither for project prefs nor for local prefs
A sorry this w...
Andreas Müller
09:55 AM feature request #8572: Rule considered configurable
Please have some more indentation for the sub-preferences on the name details view. Currently it is only ~1/3 of the ... Andreas Müller
09:44 AM feature request #8572: Rule considered configurable
If "rule considered" is not switched on also "Code edition" should be automatically be switched off in the preference... Andreas Müller
09:42 AM feature request #8572: Rule considered configurable
~~The filtering does not work! Neither for project prefs nor for local prefs~~ => see #8572#note-9 Andreas Müller
09:38 AM feature request #8572 (Feedback): Rule considered configurable
Please use human readable version for rule considered. E.g. by using getMessage().
@AK: which method do you use in...
Andreas Müller
09:46 AM bug #8570: PolytomousKeyNode.otherNode missing in REST service response
I will check this after release. We should link the related dataportal example from cuba(?) - see mail WGB. Andreas Müller
09:34 AM bug #8584 (Feedback): Appended phrase should be shown on top level for misapplied names
Andreas Müller
09:34 AM bug #8584: Appended phrase should be shown on top level for misapplied names
Yes the order is correct now and also the selection for top level controls makes sense.
Some open minor issues (op...
Andreas Müller

10/31/2019

03:58 PM Revision 42e926d0 (cdmlib): cleanup
Andreas Müller
03:51 PM Revision 2f18fc04 (cdmlib): cleanup
Andreas Müller
02:29 PM Revision a3314925 (cdmlib): add dummy file to cdmlib-cache/src/test/java to make the folder exist...
Andreas Müller
12:17 PM bug #8638 (New): Session behavior not deterministic
It seems that the behavior of the session cache handling is not deterministic. I did exchange a name for a taxon by a... Andreas Müller
11:27 AM bug #8637 (New): CCE when opening Session View for taxon navigator
When trying to open the session view for the taxon navigator I get the below exception.
I think it is expected tha...
Andreas Müller

10/30/2019

11:39 PM bug #8612 (Closed): Import E+M IPNI names
Andreas Müller
11:38 PM bug #8612 (Resolved): Import E+M IPNI names
Applied in changeset commit:cdmlib-apps|910fd9d6b6d97781707bfd9a6d48a3486975ebc3. Andreas Müller
11:38 PM Revision 910fd9d6 (cdmlib-apps): fix #8612 final changes to E+MIpniImport
Andreas Müller
09:12 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
This is probably the same issue as in #7699 and especially #7699#note-6 Andreas Müller
09:11 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
AK, can you explain how far this ticket is related to the "copied to" ticket #8627 Andreas Müller
01:54 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
Is this behaviour reproducable? I could not reproduce it Katja Luther
04:33 PM Revision 824f5653 (cdmlib): ref #8450 Fix potential NPE
Patrick Plitzner
04:30 PM Revision eb4a043b (cdmlib): ref #8450 Recurse through parent taxon nodes for default description
Patrick Plitzner
03:03 PM bug #8605 (Feedback): ClassCastException in Feature editor when adding new Defined Term
I could not reproduce this exception. But I am not sure what you mean with the 3rd step "choose an existing term (e.g... Patrick Plitzner
02:45 PM bug #8605 (In Progress): ClassCastException in Feature editor when adding new Defined Term
Patrick Plitzner
03:00 PM Revision a2d32af1 (cdmlib): remove whitespace after title for default references with only title ...
Andreas Müller
02:55 PM Revision 4ebcecf9 (cdmlib-apps): ref #8612 implementation of E+MIpniImport (near ready)
Andreas Müller
02:19 PM Revision c2f6e700 (cdmlib): fix test because dna provider is not set as default anymore
Katja Luther
02:00 PM Revision cdbfdfb0 (cdmlib): cleanup
Andreas Müller
02:00 PM Revision 52a42c7d (cdmlib): ref #8612 use better generics for findByExample
Andreas Müller
01:49 PM Revision e28238b0 (cdmlib): add test file
Katja Luther
01:27 PM Revision 0203fed0 (taxeditor): rename cdm instance to database
Katja Luther
01:18 PM Revision 8a720214 (taxeditor): ref #8631: remove the possibility to search for dna when importing...
Katja Luther
01:18 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
As a workaround the possibility to search for dna is disabled for file import. For the biocase seach it is still poss... Katja Luther
10:26 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
The ClassCastException should be solved with the last commit Katja Luther
09:56 AM bug #8631 (In Progress): ABCD import fails to put new taxa into the classification, create medias...
Katja Luther
09:55 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
the media was not imported because of a NPE, this is fixed.
the dna was not associated to the specimen because of wr...
Katja Luther
01:07 PM Revision 4ef89673 (cdmlib): add test for import abcd with search for available dna
Katja Luther
01:07 PM Revision a021cb95 (cdmlib): remove default dna source
Katja Luther
01:05 PM Revision c3d2f6db (cdmlib): change biocase provider to herbar to fix test
Katja Luther
12:04 PM Revision be76eb89 (taxeditor): use same ABCDImportConfiguratorWizardPage for file import and search
Katja Luther
10:21 AM Revision 92546b65 (taxeditor): ref #8631: fix ClassCastException for abcd import and NPE in abcd...
Katja Luther
09:54 AM Revision f7717334 (cdmlib): ref #8631: fix errors in abcd import
Katja Luther

10/29/2019

12:19 AM bug #8636 (New): Handle "Change to Person" same as deduplication
Currently when changing a single person team to a person the action is immediately saved and no new search is running... Andreas Müller
06:14 PM task #8635 (In Progress): install collectd + facette for server monitoring
Andreas Kohlbecker
06:14 PM task #8635 (In Progress): install collectd + facette for server monitoring
We will use collectd + facette for now:
Test installation on edit-test as client and edit-staging as master to c...
Andreas Kohlbecker
05:57 PM bug #8634 (Closed): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator(...

~~~~
login : admin
editor version : 5.11.0.qualifier
server : 160.45.63.230 (edit-WS I) / caryophyllales_demo_01...
Andreas Kohlbecker
05:48 PM bug #8633 (Closed): version 5.11 can not connect to workshop servers
connecting works again - thnx! Andreas Kohlbecker
05:44 PM bug #8633 (Resolved): version 5.11 can not connect to workshop servers
please review whether this is fixed with the last changes Katja Luther
05:14 PM bug #8633 (Closed): version 5.11 can not connect to workshop servers
a picture can tell so much more that 1000 words:
![](picture030-1.png)
this works with version 5.10
Andreas Kohlbecker
05:43 PM Revision df69489f (taxeditor): fix login problem
Katja Luther
04:50 PM bug #8632 (Closed): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in...
same import configuration shown in #8631
Andreas Kohlbecker
03:28 PM bug #8631 (Closed): ABCD import fails to put new taxa into the classification, create mediaspecim...
To reproduce:
* import attachment:Arenaria_ABCD_one_unit.xml with the below options
![](picture367-1.png)
at...
Andreas Kohlbecker
03:08 PM bug #8630 (Closed): ClassCastException when ABCD import has finished
after a ABCD import has run a ClassCastException happens on processing the result data:
~~~
!MESSAGE An internal ...
Andreas Kohlbecker
02:24 PM bug #8629: Specimen editor (tree) new FieldUnit not in hierarchy
The problem I rather a usability problem. The specimen can be dragged onto the field unit to create the hierarchy. Bu... Andreas Kohlbecker
02:16 PM bug #8629 (New): Specimen editor (tree) new FieldUnit not in hierarchy
I created a new field unit for a specimen by doing a right click on the specimen which has no field unit yet and choo... Andreas Kohlbecker
01:53 PM bug #8628 (Closed): Add ORCID as person identifier
WGB:
wir sollten darüber nachdenken, wie wir ORCID Identifier mit Personen verbinden - das wäre ein zusätzliches A...
Andreas Müller
01:25 PM bug #8582 (Resolved): Taxon Navigator: Classification label not refreshed & new taxa not visible
Applied in changeset commit:taxeditor|5f0db2701c5631c2d83e7441fc963adfba5c9f8a. Katja Luther
01:24 PM Revision 5f0db270 (taxeditor): fix #8582: fix refresh in navigator
Katja Luther
01:24 PM bug #8627 (New): NullPointerException (NPE) on saving Specimen Editor (list)
I followed the instrcutions given in Manual-EDIT-Platform-v.1.19b Chapter 4.3.7 and 9.4:
* is started as described...
Andreas Kohlbecker
01:18 PM bug #8626 (Duplicate): NullPointerException (NPE) on saving Specimen Editor (list)
I followed the instrcutions given in Manual-EDIT-Platform-v.1.19b Chapter 4.3.7 and 9.4:
* Start with fresh db car...
Andreas Kohlbecker
01:17 PM bug #8498: Set Flags should show the current status of the flags
this is already done by showing either "set doubtful" or "remove doubtful" as menu item. But there is a problem with ... Katja Luther
12:49 PM bug #7143 (Resolved): Finish not enabled when unprotecting titleCache in new Person dialog
now it should work correctly, please review Katja Luther
12:48 PM Revision 788e46eb (taxeditor): ref #7143: enable finish correctly when titlecache is set
Katja Luther
12:31 PM feature request #8625 (Closed): Add count parameter to StateData
`count` should be used to count the number of states summarized in one StateData
Data example for leaf color:
bla...
Patrick Plitzner
11:53 AM bug #8584 (Resolved): Appended phrase should be shown on top level for misapplied names
please have a look whether the order of the fields make sense. Now all taxon related fields are at the top of the sec... Katja Luther
11:48 AM Revision 9ca58dbb (taxeditor): ref #8584: move appended phrase and publish flag
Katja Luther
11:28 AM feature request #8568 (Resolved): improve performance for term and vocabulary preference pages
please review Katja Luther
10:30 AM feature request #8624 (Closed): Add abbrev title cache to search in bulk editor
The bulk editor results should also contain results for caches containing abbreviations like TeamOrPerson.nomenclatur... Andreas Müller

10/28/2019

07:11 PM feature request #8623: BulkEditors: feedback if search is still running/ready and how many record...
For long time there is a requirement already to show the number of returned records for the bulk editor. This require... Andreas Müller
07:08 PM feature request #8623 (New): BulkEditors: feedback if search is still running/ready and how many ...
Why did you set this to Feedback? Andreas Müller
05:33 PM feature request #8623 (Feedback): BulkEditors: feedback if search is still running/ready and how ...
This is actually working but I was too im patient after hitting enter, the search was already executing but without f... Andreas Kohlbecker
05:16 PM feature request #8623 (New): BulkEditors: feedback if search is still running/ready and how many ...
It would be nice if the search in a BulkEditor would be executed when the user hits `enter` after typing the query st... Andreas Kohlbecker
03:58 PM Revision d02bffd6 (taxeditor): ref #8450 Fix config labels for default matrix values
Patrick Plitzner
12:19 PM Revision 34a22853 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-...
Katja Luther
11:35 AM bug #8622 (Resolved): Missing specimen Identifier leads to empty brackets in portal
Patrick Plitzner
11:35 AM bug #8622 (Closed): Missing specimen Identifier leads to empty brackets in portal
If a specimen has no identifier like accession number, barcode or catalog number there are empty brackets in the spec... Patrick Plitzner
11:21 AM Revision 8241040a (cdmlib): Do not show empty brackets if no identifier is present for specimen
Patrick Plitzner

10/27/2019

07:28 PM feature request #8137: Implement sources for type designations in data portal
Note: isLectopye() was renamed to hasDesignationSource() Andreas Müller

10/26/2019

08:52 AM Revision d2c54d6f (cdmlib): cleanup
Andreas Müller
08:51 AM Revision f270c866 (cdmlib): normalize getAllXXX methods in ReferenceService
Andreas Müller
08:16 AM Revision 24ff7df5 (cdmlib-apps): cleanup
Andreas Müller
08:15 AM Revision b5f5a43c (cdmlib-apps): ref #8612 first implementation of E+MIpniImport
Andreas Müller
08:11 AM Revision 31502678 (cdmlib): cleanup
Andreas Müller
08:10 AM Revision 5899ca52 (cdmlib): ref #8612 add marker type for epublished references
Andreas Müller
08:10 AM Revision 932e616d (cdmlib): ref #8612 add Now to VerbatimTimePeriod factory methods
Andreas Müller
08:09 AM Revision b04afca3 (cdmlib): ref #8612 add addOriginalSpelling to TaxonName
Andreas Müller

10/25/2019

05:50 PM bug #8588: function of TaxonNode context menu 'Copy' is unclear
I like the idea of having something like "Copy classification path" or "Copy hierarchy path" or so. This is something... Andreas Müller
05:37 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Ich meine nicht das verschieben, sondern die Änderung der Semantik. Wir würden ja das jetzige Konzept aufbrechen, das... Andreas Müller
05:25 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> Also dann müssten wir da alles...
Andreas Kohlbecker
05:17 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> > > Übrigens sollten wir über...
Andreas Kohlbecker
04:46 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > Also ich finde das weiterhin gut, die Projektsettings dor...
Andreas Müller
04:41 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > Übrigens sollten wir über ein Recht nachdenken, die DB-P...
Andreas Müller
05:20 PM bug #7143 (In Progress): Finish not enabled when unprotecting titleCache in new Person dialog
Katja can you check the state here.
But we need to be very careful. I remember this has been fixed once but the fi...
Andreas Müller
05:17 PM bug #8597: Name and taxon details: UI counter intuitive regarding cache states
Andreas Kohlbecker wrote:
> The idea of coloring the unused fields can never be applied consistently to the UI
I ...
Andreas Müller
04:58 PM feature request #7417 (Resolved): Make pro parte and partial synonym relationships always visible...
should be fixed already, review is pending. Andreas Kohlbecker
04:33 PM bug #8547 (New): newly created article with new journal does not appear in selection dialog
Is there a reason why you did set as "Feedback" on me? Andreas Müller
04:28 PM bug #8547: newly created article with new journal does not appear in selection dialog
Katja Luther wrote:
> Katja Luther wrote:
> > this problem appears only when the newly created in-reference is not ...
Andreas Müller
03:35 PM bug #8547 (Feedback): newly created article with new journal does not appear in selection dialog
Katja Luther wrote:
> this problem appears only when the newly created in-reference is not of the type journal.
I...
Katja Luther
04:05 PM bug #8621: Do not save empty sources
The question is how to implement. Maybe we simply take all OriginalSource Objects from the session cache and check if... Andreas Müller
03:32 PM bug #8621 (New): Do not save empty sources
In E+M it happened quite often that completely empty sources were created for what ever reason.
We should either de...
Andreas Müller
01:00 PM Revision 9ff7f3d8 (cdmlib-apps): merging fauna Eu - Erms -continue
Katja Luther
12:55 PM bug #7478: Fix pro parte synonym search
Generally it looks like pro parte synonyms can be searched for but the result in the dataportal is not nice. New tick... Andreas Müller
12:46 PM bug #8620 (New): Improve pro parte synonym search for dataportal
mir fällt gerade auf, dass die Suchergebnisse von pro parte Synonymen im Portal (z.B. E+M) noch sehr unschön sind. Da... Andreas Müller
09:07 AM bug #8616: Distribution Editor: allow for hiding columns without data
The table offers the following options on right-click on a column header:
* hide column
* show all columns
may...
Andreas Kohlbecker

10/24/2019

10:59 PM bug #8616: Distribution Editor: allow for hiding columns without data
But definetly I agree that having a saveable projection might really be useful and should be handled with high priori... Andreas Müller
10:46 PM bug #8616 (New): Distribution Editor: allow for hiding columns without data
I agree that it is good to be able to easily return to the same settings as before hand. So we should add the functio... Andreas Müller
04:42 PM bug #8616: Distribution Editor: allow for hiding columns without data
The use case:
The user edits a taxonomic group which has a very specific distribution in a set of subareas and wan...
Andreas Kohlbecker
03:57 PM bug #8616 (Feedback): Distribution Editor: allow for hiding columns without data
Can you describe the use use case when this is really needed a bit more? For taxonomic users I can't really see this ... Andreas Müller
03:07 PM bug #8616 (New): Distribution Editor: allow for hiding columns without data
The Distribution Editor should offer an option to hide those columns which do not have any data. In order to get an o... Andreas Kohlbecker
03:42 PM task #8619 (New): Distribution Selection Dialog: optimize column width for more compact layout
The columns take more space than needed, when showing only ids in the header an cells.
Some means to reduce the c...
Andreas Kohlbecker
03:23 PM task #8618 (New): Distribution Selection Dialog:
add tooltip help texts to all buttons
![](picture489-1.png)
so fat there is only a text for the third button
Andreas Kohlbecker
03:22 PM task #8617 (New): rename Distribution Selection Wizard -> Distribution Selection Dialog
since is not a wizard consisting of multiple steps it should be named "Dialog" Andreas Kohlbecker
01:58 PM bug #8615 (New): Distribution Editor: only available if enabled in local preferences
data base: WS1:carypophyllales_demo_01
The distribution editor is not available in the context menu:
![](pict...
Andreas Kohlbecker
01:46 PM Revision b08a856c (cdm-dataportal): typo in doc
Andreas Kohlbecker
12:49 PM bug #8614 (New): TermEditor: details view does not follow the active term after save
To reproduce:
* Add new Feature term
* select the new term and modify it in the details view: e.g.: select Suppor...
Andreas Kohlbecker
11:46 AM Revision 073285dc (taxeditor): ref #8613: add missing interfaces
Katja Luther
11:45 AM Revision e01ad27b (taxeditor): set flag... should not be enabled for classifications
Katja Luther
11:13 AM Revision c39ae40f (taxeditor): adapt granted authority editor to feature based rights
Katja Luther
11:06 AM Revision df947da5 (taxeditor): ref #8239: disable details for missing rights
Katja Luther
10:06 AM Revision 44d90517 (taxeditor): ref #8613: using default reference also when adding new source in ...
Katja Luther
10:05 AM feature request #8613 (Closed): For distribution editor default reference should be used also whe...
To confirm an existing status in a new source, the default reference should also be added to a distribution when addi... Katja Luther

10/23/2019

02:45 PM feature request #8489: Further issues for DB preferences
Andreas Kohlbecker wrote:
> * when I set the subject to for example "Germany" I find no means to reset it to "Defa...
Andreas Müller
02:34 PM bug #8612 (Closed): Import E+M IPNI names
Andreas Müller
02:32 PM feature request #8611: [DISCUSS] how to handle editor teams
There is already a discussion on this somewhere, either in an email thread or in a ticket.
Needs to be discussed. Ha...
Andreas Müller
10:23 AM feature request #8611 (New): [DISCUSS] how to handle editor teams
mail ERS:
Es geht um das Formular „Edit Team“.
1.) An welcher Stelle kann oder soll ich einem Autorenteam (b...
Katja Luther
12:00 PM feature request #4877: implement setting for choosing the SourceTypes to be shown
in deed, this should be easy to do, priority increased, please increase again once it gets more urgent Andreas Kohlbecker
11:34 AM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, pane...

Mein vorläufiges Fazit aus der Umfrage ist, dass alle "Formular-Felder" Editoren sind, also auch der Details-View...
Andreas Kohlbecker
11:33 AM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, pane...
A poll on editor terms was created on 2019-10-10 : Umfrage https://terminplaner4.dfn.de/enQ2EAH8G7jKtJev Andreas Kohlbecker
10:43 AM Revision 406cc5b9 (cdmlib-apps): remove import TestDatabase
Katja Luther
09:31 AM Revision 5398839e (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-...
Katja Luther
09:30 AM Revision 17d546a5 (cdmlib-apps): ref #1445: smaller changes in activators
Katja Luther
02:13 AM Revision fae562e5 (cdmlib-apps): update E+M mapping csv file
Andreas Müller

10/22/2019

11:03 PM bug #8610 (Resolved): tagged_text_extract_nomstatus() fails handling more than one status
Applied in changeset commit:cdm-dataportal|e9ac7c6f253ee5304766130195b650c9767496bb. Andreas Kohlbecker
10:42 PM bug #8610 (Closed): tagged_text_extract_nomstatus() fails handling more than one status

https://www.europlusmed.org/cdm_dataportal/taxon/5f488ccd-526d-4b0c-833d-2014c51e50a7/synonymy?highlite=86e4601d-22...
Andreas Kohlbecker
11:02 PM Revision e9ac7c6f (cdm-dataportal): fix #8610 tagged_text_extract_nomstatus() can handle multiple...
Andreas Kohlbecker
04:41 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
Andreas Müller wrote:
> ... what about those cases where a dialog pops up and asks if we want to completely delete o...
Andreas Kohlbecker
04:19 PM task #8599 (New): TypeDesignation details pane: clarify function of the remove buttons
About the 2 examples: some whitespace is definetely better then the current solution. If we should use a new button i... Andreas Müller
04:13 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
Andreas Kohlbecker wrote:

> Does the remove button for the Specimen always relally delete the Specimen or is it o...
Andreas Müller
03:51 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
in the second case the layout could be also changed to
![](picture616-1.png)
But this would require to adapt t...
Andreas Kohlbecker
03:45 PM task #8599 (Feedback): TypeDesignation details pane: clarify function of the remove buttons
How about this?
![](picture425-1.png)
this way the button group, which acts on the Specimen, is separated fro...
Andreas Kohlbecker
04:14 PM feature request #8589: Allow undo of typing actions in the textfields
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > We should decide which action to use f...
Andreas Kohlbecker
04:02 PM Revision 38672714 (cdmlib-apps): ref #8479 add import source to FauEu2CDM/CDM-2-CDM import
Andreas Müller
03:57 PM Revision 2e4f981e (cdmlib-apps): cleanup
Andreas Müller
03:22 PM task #8598: Prevent from adding type designations to names with informal ranks
Andreas Müller wrote:
> Not sure if we should implement this.
>
> 1. In E+M there were very rare cases of such na...
Andreas Kohlbecker
03:17 PM bug #8604: Key Editor View: Details for key missing when key is empty
Isn't ist possible to add a FocusListener to the PolytomousKey table like `viewer.getControl().addFocusListener(e -> ... Andreas Kohlbecker
02:45 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Müller wrote:
> Also ich finde das weiterhin gut, die Projektsettings dort zu haben, wo das Projekt admini...
Andreas Kohlbecker
02:35 PM Revision 618fae65 (taxeditor): move source section to the bottom of typedesignation section
Katja Luther
02:12 PM feature request #8569: Supplemental data for PolytomousKeyNodes
Andreas Kohlbecker wrote:
>This approach would also help in case of the Details-View for a taxon where is is require...
Andreas Müller
02:10 PM feature request #8569: Supplemental data for PolytomousKeyNodes
Interesting idea. Lets use the official(?) name accordion (https://en.wikipedia.org/wiki/Accordion_(GUI)).
Only I ...
Andreas Müller
01:14 PM feature request #8569: Supplemental data for PolytomousKeyNodes
Wouldn't it be an option to extend the supplemental data view, so that it can show the data for multiple entities at ... Andreas Kohlbecker
01:50 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
I also agree with solution B. But maybe we can add a comma separated label list of the (server side) selected terms. ... Andreas Müller
12:26 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
> Set back to "normal"
Agreed!
But, freezing the checklist panes is really ugly. You can't even scroll the chec...
Andreas Kohlbecker
01:46 PM Revision 9eaf34b7 (taxeditor): adapt editor to changes in typestatus.isLectotype -> hasDesignatio...
Katja Luther
01:25 PM Revision 4a8d1955 (cdmlib): cleanup
Andreas Müller
01:25 PM Revision 0e32b8d4 (cdmlib): rename isLectotype to hasDesignationSource
Andreas Müller
12:03 PM task #8609 (Resolved): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Katja Luther
12:02 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
2 x +1 von AK und AM Andreas Kohlbecker
12:01 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Im Englischen habe ich es mit Leerzeichen geschrieben, allerdings im Deutschen habe ich Taxonknoten geschrieben, würd... Andreas Kohlbecker
12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
OK, kannst du das erstmal so implementieren. Bei Bedarf können wir es ja nochmal ändern.
AM
Andreas Kohlbecker
12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Hallo,
ich wäre auch eher für TaxonNode Dialog, alle anderen Einträge, die sich Editoren nennen, gehen nicht als D...
Andreas Kohlbecker
12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Hallo,
dem schließe ich mich grundsätzlich an. Ich glaube ich hatte das auch hin- und wieder mal angemerkt. Taxon ...
Andreas Kohlbecker
11:59 AM task #8609 (Closed): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Wizard ist ja eher ein Kette von Dialogen, was sich hier öffnet ist ein einfacher Dialog zum Editieren. ("/... Wizard... Andreas Kohlbecker
11:45 AM feature request #8608 (New): Show message in status bar if linking of taxon in navigator failes
The linking in taxon navoigator failes for taxa without nodes, the check for existing nodes is implemented but we sho... Katja Luther
11:31 AM Revision c6828e67 (taxeditor): fix NoSuchElementException for taxa without nodes - continue
Katja Luther
11:09 AM Revision ffd20969 (taxeditor): fix NoSuchElementException for taxa without nodes
Katja Luther
10:42 AM Revision c6315a5d (taxeditor): rename taxonnode wizard to taxonnode dialogue
Katja Luther
10:41 AM Revision a801b069 (taxeditor): rename taxonnode wizard to taxonnode dialog
Katja Luther

10/21/2019

09:03 PM task #8607: Dataprocessing for GBOL Dataportal/Algaterra
ToDo Henning Kusber:
Specimen Tool: Check & block all data not related to GBOL or Diatom Group research (as discus...
Wolf-Henning Kusber
01:31 PM task #8607 (New): Dataprocessing for GBOL Dataportal/Algaterra
In this ticket we describe the steps for dataprocessing before importing data into the algaterra instance.
Katja Luther
05:39 PM feature request #8137: Implement sources for type designations in data portal
WGB:
es ist richtig, dass es hier zwei Fälle gibt: Solche, die die Quelle des Records angeben (woher kommt die Inf...
Andreas Müller
04:56 PM bug #8604: Key Editor View: Details for key missing when key is empty
Not sure if this is easy to solve. I had discussions on it with Cherian already. As PKs without node are very rare in... Andreas Müller
04:51 PM bug #8571: PolytomousKeyNode.otherNode not editable in TaxEditor
This is probably more or less a duplicate for #2343 so we should check if #2343 can be closed once this is resolved. ... Andreas Müller
02:01 PM Revision 770828ca (cdmlib-apps): cleanup and ref #8587 handle special form as rank for fungi (IF)
Andreas Müller
01:50 PM feature request #8589: Allow undo of typing actions in the textfields
Katja Luther wrote:
> Andreas Müller wrote:
> > We should decide which action to use for undo. To me the most intui...
Andreas Müller
01:44 PM feature request #8589: Allow undo of typing actions in the textfields
Andreas Müller wrote:
> We should decide which action to use for undo. To me the most intuitive is "ESC"-key. Any ot...
Katja Luther
01:47 PM Revision a0aeb474 (taxeditor): ref #8562: fix allow override handling in admin distribution status
Katja Luther
11:52 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term
Personally I cannot reproduce this, but as it is a CCE we should fix it immediately.
PP+KL can you please decide w...
Andreas Müller
11:39 AM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Also ich finde das weiterhin gut, die Projektsettings dort zu haben, wo das Projekt administriert wird und die lokale... Andreas Müller
11:28 AM feature request #4877: implement setting for choosing the SourceTypes to be shown
I wonder why this ticket has so low priority. I think it should be easy to implement and might be of some relevance i... Andreas Müller
11:24 AM bug #8601 (Feedback): checkbox lists in preferences - button to expand, collapse, ... not funci...
The buttons are only not functional if "use default settings" is chosen. Therefore I suggest to either close this tic... Andreas Müller
11:20 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
As discussed in #note-8 and #note-9 this is not critical because not unfucntional, but it needs better UI handling to... Andreas Müller
11:09 AM task #8599: TypeDesignation details pane: clarify function of the remove buttons
This behaviour is the same all over the application so users get used to it once they have ever deleted something or ... Andreas Müller
11:01 AM task #8598: Prevent from adding type designations to names with informal ranks
Not sure if we should implement this.
1. In E+M there were very rare cases of such names with nom. ref. (so there ...
Andreas Müller
10:54 AM Revision ebb98af0 (taxeditor): minor
Katja Luther
10:51 AM Revision 89d6c211 (cdmlib): ref #8458: revert removing of fieldUnitDto list as parameter
Katja Luther

10/20/2019

12:56 PM feature request #8589: Allow undo of typing actions in the textfields
We should decide which action to use for undo. To me the most intuitive is "ESC"-key. Any other suggestions?
Also ...
Andreas Müller
 

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