Activity

From 10/20/2019 to 11/18/2019

10:19 PM bug #8664: SQLGrammarException when opening Specimen selection: I guess an empty list was the reason here. Isn't this fixed yet? If not I guess it is very easy to fix and we should ... Andreas Müller
03:56 PM bug #8664 (Closed): SQLGrammarException when opening Specimen selection: … for „Test WorkingSet“ in MatrixEditor

~~~
login : admin
editor version : 5.11.0.201911041248
serve... Patrick Plitzner
05:12 PM feature request #8613 (Resolved): For distribution editor default reference should be used also when new source is created: Katja Luther wrote:
> Andreas Müller wrote:
> > It still does not work if a source existed already before opening t... Katja Luther
05:00 PM feature request #8613 (In Progress): For distribution editor default reference should be used also when new source is created: Andreas Müller wrote:
> It still does not work if a source existed already before opening the DistrEditor for the gi... Katja Luther
03:43 PM feature request #8613 (Feedback): For distribution editor default reference should be used also when new source is created: It still does not work if a source existed already before opening the DistrEditor for the given record. Please test i... Andreas Müller
09:10 AM feature request #8613 (Resolved): For distribution editor default reference should be used also when new source is created: Andreas Müller wrote:
> Does not work for me yet. The reference field is still empty if I selected a base source and... Katja Luther
05:11 PM Revision ca9d00b6 (taxeditor): ref #8613: send event to update details view when set default source: Katja Luther
03:55 PM bug #8663 (Duplicate): LIE when trying to save a tree node: I tried to edit “Character Tree Test”-“second test structure third property” node in Character node editor.
Befo... Patrick Plitzner
03:53 PM bug #8662 (Closed): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected: … im Taxon filter als Kontextmenü. Auch wenn noch gar kein Taxon dort angezeigt wird.

Auch wenn Taxa existier... Patrick Plitzner
03:52 PM feature request #8661 (Closed): "New DataSet" should ask for label and then open the dataset: … im Descriptive Data Set Navigator sollte den Descriptive Data Set Editor öffnen, damit das Dataset oder zumindest s... Patrick Plitzner
03:51 PM feature request #8642 (Closed): Add tree editor for rank, NamedArea and PresenceAbsence: Generic term tree menu creation moved to new ticket #8660. Also handling of not allowed duplicates #8655.
Close th... Andreas Müller
10:24 AM feature request #8642 (Resolved): Add tree editor for rank, NamedArea and PresenceAbsence: Order is fixed.
Create new ticket for remaining issues -> #8655 Patrick Plitzner
03:50 PM bug #8660 (Duplicate): Generic menu creation for Term trees: Currently the term tree menu is hardcoded. It should be implemented generically as the term (vocabulary) menu.
Thi... Andreas Müller
03:46 PM feature request #8648 (Closed): Simplify name details view configuration: Works as expected now. Andreas Müller
03:40 PM feature request #8470 (Feedback): Handle username constraints in user and group editing: Please also implement for groups. Andreas Müller
03:39 PM Revision 55236f7f (cdm-dataportal): ref #8596 harmonizing documentation: Andreas Kohlbecker
03:37 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: I don't insist in keeping this function in the ABCD import. I only feared that we lose valuable functionality. theref... Andreas Kohlbecker
03:27 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: I suggest to close this ticket and if needed open a new ticket to discuss the necessity (and best implementation) of ... Andreas Müller
03:09 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: As mentioned by Katja before I do not understand why we need it. It is work to keep such things running and as Katjas... Andreas Müller
01:51 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: Katja Luther wrote:
...
> ... But when the problems solved we can reintegrate it to the file import. It is only... Andreas Kohlbecker
01:33 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: Andreas Kohlbecker wrote:
> Katja Luther wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
> > >... Katja Luther
01:23 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > Andreas Kohlbecker wrote:
> > >... Andreas Kohlbecker
01:14 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
>... Katja Luther
01:05 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: Patrick Plitzner wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > We used the specimen search ... Andreas Kohlbecker
12:39 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > We used the specimen search for DNA in the Taxeditor. This ... Patrick Plitzner
11:49 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: Andreas Müller wrote:
> why did you give this to Lutz? I guess this was a mistake?
OOPS! Thank you for fixing this. Andreas Kohlbecker
11:47 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: why did you give this to Lutz? I guess this was a mistake? Andreas Müller
11:30 AM bug #8632 (Feedback): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: Andreas Kohlbecker
11:28 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: Patrick Plitzner wrote:
> We used the specimen search for DNA in the Taxeditor. This still works so no problems from... Andreas Kohlbecker
10:13 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: So AK, you may decide if this ticket can be fully closed. But I guess so. Andreas Müller
10:05 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration: We used the specimen search for DNA in the Taxeditor. This still works so no problems from my side Patrick Plitzner
03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible: Andreas Kohlbecker wrote:
> There is still a problem related to this issue.
>
> The TaxonNavigator is not being r... Andreas Müller
03:22 PM bug #8659 (Closed): Taxon navigator: not refreshed after ABCD file import: Copied from #8582
The TaxonNavigator is not being refreshed after importing an ABCD file, newly created classifica... Andreas Müller
03:19 PM feature request #8596 (Closed): Add a list of descriptions to the taxon page: Patrick Plitzner
01:48 PM feature request #8596: Add a list of descriptions to the taxon page: from my perspective can this ticket be closed. Andreas Kohlbecker
01:46 PM feature request #8596: Add a list of descriptions to the taxon page: Patrick Plitzner wrote:
> Andreas K.: You mentioned that it is possible to assign **weights** to these blocks. Wit... Andreas Kohlbecker
12:36 PM feature request #8596: Add a list of descriptions to the taxon page: But the tree that I mentioned can be used for both the block here and for the "description detail page" (#8595) Andreas Müller
12:34 PM feature request #8596: Add a list of descriptions to the taxon page: Patrick Plitzner wrote:
> Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here... Andreas Müller
12:30 PM feature request #8596: Add a list of descriptions to the taxon page: Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here. Just about the order of T... Patrick Plitzner
12:09 PM feature request #8596: Add a list of descriptions to the taxon page: Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> Can you please explain this a bit more? Is there a Feature tr... Andreas Müller
11:57 AM feature request #8596: Add a list of descriptions to the taxon page: Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Do we need a configuration method to define the "Description ... Andreas Müller
11:45 AM feature request #8596: Add a list of descriptions to the taxon page: Andreas Müller wrote:
> Do we need a configuration method to define the "Description (aggregated)" feature tree? Oth... Andreas Kohlbecker
09:39 AM feature request #8596: Add a list of descriptions to the taxon page: Do we need a configuration method to define the "Description (aggregated)" feature tree? Otherwise it seems to be imp... Andreas Müller
09:22 AM feature request #8596: Add a list of descriptions to the taxon page: Currently only the aggregated descriptions are shown.
What still needs to be implemented is the sort order of this... Patrick Plitzner
03:18 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm: should we put back to "In Progress" or/and move to next milestone? Andreas Müller
12:52 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm: after applying the jdk8 memleak fix the effect on the cdm-server is not as good as for the cdmlib-remote-webapp alone... Andreas Kohlbecker
02:32 PM feature request #8595: Create description detail page: Code review notes:
* description.inc#1179 : `$enclosing_tag = cdm_feature_block_element_tag_name($feature_block_se... Andreas Kohlbecker
12:46 PM feature request #8595: Create description detail page: Added specs from additivity wiki Patrick Plitzner
12:05 PM feature request #8595: Create description detail page: There are still many open issues (most of them discussed in additivity). So we need a follow up ticket. This ticket a... Andreas Müller
11:38 AM feature request #8595 (Feedback): Create description detail page: It is hard to review this ticket since the requirements to the layout of the page are missing in the ticket. Please a... Andreas Kohlbecker
09:20 AM feature request #8595: Create description detail page: Example: http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/description/dc871867-3d87-4fce-b42... Patrick Plitzner
01:34 PM Revision 93666c75 (cdm-dataportal): ref #8596 changing render hint: Andreas Kohlbecker
01:12 PM Revision 0152a834 (cdm-dataportal): adding annotation to doc: Andreas Kohlbecker
01:09 PM bug #8605 (Worksforme): ClassCastException in Feature editor when adding new Defined Term: I can't reproduce this either, so it seems as if this has been fixed in the context of another task Andreas Kohlbecker
11:34 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term: I tested this with the latest nightly on the mentioned database but could not reproduce this behavior. Patrick Plitzner
12:41 PM bug #8225: Deleting one of two type designations removes both: Andreas Müller wrote:
> I change back version as the preliminary fix was done in 5.6 I think. OK?
+1 Patrick Plitzner
10:16 AM bug #8225: Deleting one of two type designations removes both: I change back version as the preliminary fix was done in 5.6 I think. OK? Andreas Müller
10:10 AM bug #8225 (Closed): Deleting one of two type designations removes both: Created a new ticket for a better fix -> #8654 Patrick Plitzner
12:32 PM feature request #8657 (Closed): Order description element in portal according to CharacterTree: Patrick Plitzner
12:13 PM feature request #8656 (Closed): [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix?: du filterst in aggregateDescription() nur DescriptionElements die Characters als Feature haben. Das
~~~java
desc... Patrick Plitzner
11:35 AM feature request #8044 (Resolved): Add "Move to..." menu to term editor: Patrick Plitzner
11:15 AM bug #7143 (Closed): Finish not enabled when unprotecting titleCache in new Person dialog: confirmed! Andreas Kohlbecker
09:08 AM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog: this is fixed now. Katja Luther
11:09 AM feature request #8238: Allow interoperability between term trees: Moving to next milestone for remaining issues Patrick Plitzner
10:58 AM feature request #6849 (In Progress): [DISCUSS] How to handle "kind of" term creation in TermEditor: Patrick Plitzner
10:21 AM feature request #6849 (Closed): [DISCUSS] How to handle "kind of" term creation in TermEditor: Closing this old discussion because the project ends. Documentation can be found in the ticket description and in the... Patrick Plitzner
10:51 AM bug #8653: NullPointerException (NPE) when focusing Taxon Name Editor: Dump deleted as it was not crucial to understand the problem.
Andreas Kohlbecker
10:37 AM feature request #8467: Save a "snapshot" of the SpecimenDescriptions used for aggregation: moving to additivitiy milestone Patrick Plitzner
10:36 AM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix: moving to additivitiy milestone Patrick Plitzner
10:23 AM feature request #8655 (Duplicate): Handle duplicates in term tree editor: Copied from #8642:
There is one related issue: if you create a new tree, by default "allow duplicates" is false, w... Patrick Plitzner
10:22 AM bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes: moving to next milestone Patrick Plitzner
10:10 AM task #8130: Check if related feature data is cleared when supported facts type is changed: Move to next milestone for remaining discussion Patrick Plitzner
10:09 AM bug #8654 (New): Find a better solution for deleting type designations: Follow up of #8225 Patrick Plitzner
10:07 AM feature request #6774: Implement OWL export: Move to next milestone because this is still considered experimental Patrick Plitzner
10:06 AM feature request #8248: Implement OWL import: Move to next milestone because this is still considered experimental Patrick Plitzner
09:58 AM bug #8533 (Closed): missing collector and fieldnumber in abcd import: > Why did you move it to 5.12. It has status resolved and should therefore be reviewed in 5.11 milestone. If there is... Patrick Plitzner
08:57 AM Revision bbe6c98f (cdm-server): ref #5048 disabling url caching per instance for jdk1.8 to avoid memleak: Andreas Kohlbecker

10:26 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm: The diagnosis method described in this article may help analyzing the problem: https://technology.blog.gov.uk/2015/12... Andreas Kohlbecker
05:44 PM bug #8646: Character Details View should provide more information on the structure and property terms: This could be done
a. by extending the label by this information or
b. by showing an infobox when hovering ove... Andreas Kohlbecker
05:37 PM bug #8646 (New): Character Details View should provide more information on the structure and property terms: It should be possible the get more information on the structure and property term which make up the Character
![]... Andreas Kohlbecker
05:27 PM bug #8645 (Closed): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import": This import function is not a general OWL import.
The information on the nature of the data to be imported must be m... Andreas Kohlbecker

05:50 PM bug #8588: function of TaxonNode context menu 'Copy' is unclear: I like the idea of having something like "Copy classification path" or "Copy hierarchy path" or so. This is something... Andreas Müller
05:37 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?: Ich meine nicht das verschieben, sondern die Änderung der Semantik. Wir würden ja das jetzige Konzept aufbrechen, das... Andreas Müller
05:25 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?: Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> Also dann müssten wir da alles... Andreas Kohlbecker
05:17 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?: Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> > > Übrigens sollten wir über... Andreas Kohlbecker
04:46 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?: Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > Also ich finde das weiterhin gut, die Projektsettings dor... Andreas Müller
04:41 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?: Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > Übrigens sollten wir über ein Recht nachdenken, die DB-P... Andreas Müller
05:20 PM bug #7143 (In Progress): Finish not enabled when unprotecting titleCache in new Person dialog: Katja can you check the state here.
But we need to be very careful. I remember this has been fixed once but the fi... Andreas Müller
05:17 PM bug #8597: Name and taxon details: UI counter intuitive regarding cache states: Andreas Kohlbecker wrote:
> The idea of coloring the unused fields can never be applied consistently to the UI
I ... Andreas Müller
04:58 PM feature request #7417 (Resolved): Make pro parte and partial synonym relationships always visible in data portals: should be fixed already, review is pending. Andreas Kohlbecker
04:33 PM bug #8547 (New): Default type of a newly created inReference should depend on the type of the reference: Is there a reason why you did set as "Feedback" on me? Andreas Müller
04:28 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference: Katja Luther wrote:
> Katja Luther wrote:
> > this problem appears only when the newly created in-reference is not ... Andreas Müller
03:35 PM bug #8547 (Feedback): Default type of a newly created inReference should depend on the type of the reference: Katja Luther wrote:
> this problem appears only when the newly created in-reference is not of the type journal.
I... Katja Luther
04:05 PM bug #8621: Do not save empty sources: The question is how to implement. Maybe we simply take all OriginalSource Objects from the session cache and check if... Andreas Müller
03:32 PM bug #8621 (New): Do not save empty sources: In E+M it happened quite often that completely empty sources were created for what ever reason.
We should either de... Andreas Müller
01:00 PM Revision 9ff7f3d8 (cdmlib-apps): merging fauna Eu - Erms -continue: Katja Luther
12:55 PM bug #7478: Fix pro parte synonym search: Generally it looks like pro parte synonyms can be searched for but the result in the dataportal is not nice. New tick... Andreas Müller
12:46 PM bug #8620 (New): Improve pro parte synonym search result for dataportal: mir fällt gerade auf, dass die Suchergebnisse von pro parte Synonymen im Portal (z.B. E+M) noch sehr unschön sind. Da... Andreas Müller
09:07 AM bug #8616: Distribution Editor: allow for hiding columns without data: The table offers the following options on right-click on a column header:
* hide column
* show all columns
may... Andreas Kohlbecker

09:03 PM task #8607: Dataprocessing for GBOL Dataportal/Algaterra: ToDo Henning Kusber:
Specimen Tool: Check & block all data not related to GBOL or Diatom Group research (as discus... Wolf-Henning Kusber
01:31 PM task #8607 (New): Dataprocessing for GBOL Dataportal/Algaterra: In this ticket we describe the steps for dataprocessing before importing data into the algaterra instance.
Katja Luther
05:39 PM feature request #8137: Implement sources for type designations in data portal: WGB:
es ist richtig, dass es hier zwei Fälle gibt: Solche, die die Quelle des Records angeben (woher kommt die Inf... Andreas Müller
04:56 PM bug #8604: Key Editor View: Details for key missing when key is empty: Not sure if this is easy to solve. I had discussions on it with Cherian already. As PKs without node are very rare in... Andreas Müller
04:51 PM bug #8571: PolytomousKeyNode.otherNode not editable in TaxEditor: This is probably more or less a duplicate for #2343 so we should check if #2343 can be closed once this is resolved. ... Andreas Müller
02:01 PM Revision 770828ca (cdmlib-apps): cleanup and ref #8587 handle special form as rank for fungi (IF): Andreas Müller
01:50 PM feature request #8589: Allow undo of typing actions in the textfields: Katja Luther wrote:
> Andreas Müller wrote:
> > We should decide which action to use for undo. To me the most intui... Andreas Müller
01:44 PM feature request #8589: Allow undo of typing actions in the textfields: Andreas Müller wrote:
> We should decide which action to use for undo. To me the most intuitive is "ESC"-key. Any ot... Katja Luther
01:47 PM Revision a0aeb474 (taxeditor): ref #8562: fix allow override handling in admin distribution status: Katja Luther
11:52 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term: Personally I cannot reproduce this, but as it is a CCE we should fix it immediately.
PP+KL can you please decide w... Andreas Müller
11:39 AM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?: Also ich finde das weiterhin gut, die Projektsettings dort zu haben, wo das Projekt administriert wird und die lokale... Andreas Müller
11:28 AM feature request #4877: implement setting for choosing the SourceTypes to be shown: I wonder why this ticket has so low priority. I think it should be easy to implement and might be of some relevance i... Andreas Müller
11:24 AM bug #8601 (Feedback): checkbox lists in preferences - button to expand, collapse, ... not functional: The buttons are only not functional if "use default settings" is chosen. Therefore I suggest to either close this tic... Andreas Müller
11:20 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled: As discussed in #note-8 and #note-9 this is not critical because not unfucntional, but it needs better UI handling to... Andreas Müller
11:09 AM task #8599: TypeDesignation details pane: clarify function of the remove buttons: This behaviour is the same all over the application so users get used to it once they have ever deleted something or ... Andreas Müller
11:01 AM task #8598: Prevent from adding type designations to names with informal ranks: Not sure if we should implement this.
1. In E+M there were very rare cases of such names with nom. ref. (so there ... Andreas Müller
10:54 AM Revision ebb98af0 (taxeditor): minor: Katja Luther
10:51 AM Revision 89d6c211 (cdmlib): ref #8458: revert removing of fieldUnitDto list as parameter: Katja Luther

12:56 PM feature request #8589: Allow undo of typing actions in the textfields: We should decide which action to use for undo. To me the most intuitive is "ESC"-key. Any other suggestions?
Also ... Andreas Müller

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