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From 10/10/2019 to 11/08/2019

11/08/2019

11:43 PM bug #4134 (Feedback): Transmissionengine Distribution seems to miss distributions for higher Taxa
Das ist für mich nicht logisch. Auch wenn die Aggregation über die Areale auch auf höheren Rangstufen erfolgte (was i... Andreas Müller
10:12 PM bug #8669 (New): Permission problems when caches are updated without permission
The problem is described in #8650 . There a person title had changed and therefore the team titlecache was updated du... Andreas Müller
10:08 PM bug #8650: PermissionDenied Exception for Teams when editing distributions
I remove from milestone as this is a pure data related fix.
We need a new ticket for handling the cache update pro...
Andreas Müller
09:05 PM Revision ed09c048 (cdmlib): cleanup
Andreas Müller
09:05 PM Revision 535525fc (cdmlib): fix #8628 update cdm.map.ser to Person.orcid
Andreas Müller
08:58 PM feature request #8668 (New): Show Person.orcid in dataportal
... but for this we first need an Person or Agent page I guess. So this ticket is blocked.
See https://support.orc...
Andreas Müller
08:56 PM feature request #8667 (Closed): Make Person.orcid editable in TaxEditor
this should be done similar to DOI in Reference class Andreas Müller
08:54 PM bug #8628: Add ORCID as person identifier
This should be fixed now. Please review. Andreas Müller
08:47 PM bug #8628 (Resolved): Add ORCID as person identifier
Applied in changeset commit:cdmlib|6e1b0ff9bdf5c8e20f1df4e5542aa44554252a81. Andreas Müller
08:51 PM Revision 9d0322b2 (cdm-vaadin): fix #8628 update Vaadin test DB to Person.orcid
Andreas Müller
08:50 PM Revision 58a6ce02 (taxeditor): fix #8628 update TaxEditor test DB to Person.orcid
Andreas Müller
08:47 PM Revision 4fb5b361 (cdmlib): cleanup
Andreas Müller
08:46 PM Revision 6e1b0ff9 (cdmlib): fix #8628 add ORCID as person identifier
Andreas Müller
08:43 PM Revision 6119597f (cdmlib): cleanup
Andreas Müller
04:52 PM bug #8666 (New): Login fails if classification can not be loaded
If the sortindex of a root taxon is destroyed the classification can not be loaded.
Loading classification is curr...
Andreas Müller
03:20 PM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors
in context menu Andreas Müller
03:14 PM feature request #8253: Authors for genus autonyms
Very strange, it seems to work with Achnanthes Bory subg. Achnanthes but not with Achnanthes Bory sect. Achnanthes. T... Andreas Müller
02:16 PM feature request #8253: Authors for genus autonyms
Hm, strange, it still doesn't seem to work. Though there is a test with the exact same string "" in NonViralNameParse... Andreas Müller
01:26 PM feature request #8253: Authors for genus autonyms
should be fixed now Andreas Müller
01:24 PM feature request #8253 (Resolved): Authors for genus autonyms
Applied in changeset commit:cdmlib|6ef5a0b16df87d2bd76e8e14cc714cd845f17366. Andreas Müller
12:14 PM feature request #8253: Authors for genus autonyms
OK, the problem is I used parseFullName in NonViralNameParserImplTest. But the editor use parseReferencedName I guess... Andreas Müller
10:49 AM feature request #8253 (Feedback): Authors for genus autonyms
when entering Achnanthes Bory sect. Achnanthes in NameEditor the rank and epithets are not parsed correctly.
The e...
Katja Luther
03:06 PM bug #8429: Rename DeterminationEvent_Reference.setOfReferences_id
Andreas Müller wrote:
> Please review.
Andreas Müller
03:05 PM feature request #8441: Add FeatureState class
Can you still remove? Did you try to remove things? So no orphan-removal issues? Andreas Müller
03:04 PM feature request #8398 (Closed): Add nomenclatural code edition to ruleConsidered
Andreas Kohlbecker wrote:
> excellently implemented, thanks a lot!
>
> I extended the protected constructors in `...
Andreas Müller
02:44 PM feature request #7019 (Feedback): sort import menu
I can't see any difference tried with update and install new version of current nightly.
![](picture714-1.png)
Andreas Müller
12:27 PM feature request #7019 (Resolved): sort import menu
Applied in changeset commit:taxeditor|708b6366b5bba1a1669243d3f7145a1967258e04. Patrick Plitzner
11:42 AM feature request #7019: sort import menu
We decided to use "Specimen online" Andreas Müller
11:07 AM feature request #7019: sort import menu
Andreas Kohlbecker wrote:
> "Specimen (webservice)" still is not a very good label, alternatives are
>
> * "Speci...
Andreas Müller
10:54 AM feature request #7019: sort import menu
"Specimen (webservice)" still is not a very good label, alternatives are
* "Specimen (BioCase)"
* "Specimen (glob...
Andreas Kohlbecker
10:47 AM feature request #7019: sort import menu
For now we could simply use separators in the menu to separate specimen from taxa and those from references etc. But ... Andreas Müller
10:44 AM feature request #7019: sort import menu
Also we should rename "Import Specimen" to "Specimen (webservice)" and ABCD to "ABCD file" to give them a bit more se... Andreas Müller
02:42 PM feature request #8470 (Resolved): Handle username constraints in user and group editing
Applied in changeset commit:taxeditor|a0e1ca0573bdcbd929a27e347010da83a453c93c. Katja Luther
02:00 PM feature request #8470: Handle username constraints in user and group editing
hmm, I think users and groups are special. There names are are unique identifiers and should not be changed anymore. ... Andreas Müller
11:18 AM feature request #8470: Handle username constraints in user and group editing
Another question:
at the moment the user is created and saved immediately, but the group is created and saved when...
Katja Luther
02:42 PM Revision a0e1ca05 (taxeditor): fix #8470: create user/group in creator
Katja Luther
02:19 PM bug #8664: SQLGrammarException when opening Specimen selection
I can't currently review as the accoding DB can't be connected to via TaxEditor at the moment. But code looks ok. I w... Andreas Müller
10:28 AM bug #8664 (Resolved): SQLGrammarException when opening Specimen selection
Patrick Plitzner
01:24 PM Revision 5f582094 (cdmlib): cleanup
Andreas Müller
01:24 PM Revision 6ef5a0b1 (cdmlib): fix #8253 fix problem with infrageneric autonyms full reference parsing
Andreas Müller
01:23 PM Revision dfd3521b (taxeditor): ref #8470: check name by regex before creating
Katja Luther
12:32 PM Revision e4101b39 (taxeditor): fix #7019 fix menu string
Patrick Plitzner
12:27 PM Revision 708b6366 (taxeditor): fix #7019 sort import menu
Patrick Plitzner
11:00 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Müller wrote:
> Can you please leave a note if this is easy to fix? Otherwise please move to new ticket as t...
Katja Luther
10:57 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Can you please leave a note if this is easy to fix? Otherwise please move to new ticket as the layout is not really p... Andreas Müller
10:42 AM Revision 9021b90c (taxeditor): ref #8410: fix NPE
Katja Luther
10:35 AM feature request #8410 (Closed): Add nomenclatural code edition to ruleConsidered in TaxEditor
It looks better now. I think we can close the ticket. Andreas Müller
10:26 AM Revision fab3ab30 (taxeditor): ref #8450 Show data set navigator menu in taxon navigator menu sec...
Patrick Plitzner
10:25 AM Revision 46a006fa (cdmlib): ref #8450 Fix SQLGrammarException when no taxa could be found
Patrick Plitzner
10:20 AM Revision 6448502c (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxedito...
Katja Luther
10:19 AM Revision 739dc887 (taxeditor): ref #8470: exception handling also for groups
Katja Luther
10:04 AM Revision 7bbfb091 (taxeditor): ref #8410: indent only for label -continue
Katja Luther
09:50 AM Revision c127b2b6 (taxeditor): ref #8410: indent only for label
Katja Luther
09:42 AM bug #8632 (Closed): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in...
Katja Luther
09:14 AM feature request #8613 (Closed): For distribution editor default reference should be used also whe...
Seems to work now Andreas Müller

11/07/2019

10:19 PM bug #8664: SQLGrammarException when opening Specimen selection
I guess an empty list was the reason here. Isn't this fixed yet? If not I guess it is very easy to fix and we should ... Andreas Müller
03:56 PM bug #8664 (Closed): SQLGrammarException when opening Specimen selection

… for „Test WorkingSet“ in MatrixEditor

~~~
login : admin
editor version : 5.11.0.201911041248
serve...
Patrick Plitzner
05:12 PM feature request #8613 (Resolved): For distribution editor default reference should be used also w...
Katja Luther wrote:
> Andreas Müller wrote:
> > It still does not work if a source existed already before opening t...
Katja Luther
05:00 PM feature request #8613 (In Progress): For distribution editor default reference should be used als...
Andreas Müller wrote:
> It still does not work if a source existed already before opening the DistrEditor for the gi...
Katja Luther
03:43 PM feature request #8613 (Feedback): For distribution editor default reference should be used also w...
It still does not work if a source existed already before opening the DistrEditor for the given record. Please test i... Andreas Müller
09:10 AM feature request #8613 (Resolved): For distribution editor default reference should be used also w...
Andreas Müller wrote:
> Does not work for me yet. The reference field is still empty if I selected a base source and...
Katja Luther
05:11 PM Revision ca9d00b6 (taxeditor): ref #8613: send event to update details view when set default source
Katja Luther
03:55 PM bug #8663 (Duplicate): LIE when trying to save a tree node

I tried to edit “Character Tree Test”-“second test structure third property” node in Character node editor.
Befo...
Patrick Plitzner
03:53 PM bug #8662 (Closed): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon i...
… im Taxon filter als Kontextmenü. Auch wenn noch gar kein Taxon dort angezeigt wird.

Auch wenn Taxa existier...
Patrick Plitzner
03:52 PM feature request #8661 (Closed): "New DataSet" should ask for label and then open the dataset
… im Descriptive Data Set Navigator sollte den Descriptive Data Set Editor öffnen, damit das Dataset oder zumindest s... Patrick Plitzner
03:51 PM feature request #8642 (Closed): Add tree editor for rank, NamedArea and PresenceAbsence
Generic term tree menu creation moved to new ticket #8660. Also handling of not allowed duplicates #8655.
Close th...
Andreas Müller
10:24 AM feature request #8642 (Resolved): Add tree editor for rank, NamedArea and PresenceAbsence
Order is fixed.
Create new ticket for remaining issues -> #8655
Patrick Plitzner
03:50 PM bug #8660 (New): Generic menu creation for Term trees
Currently the term tree menu is hardcoded. It should be implemented generically as the term (vocabulary) menu.
Thi...
Andreas Müller
03:46 PM feature request #8648 (Closed): Simplify name details view configuration
Works as expected now. Andreas Müller
03:40 PM feature request #8470 (Feedback): Handle username constraints in user and group editing
Please also implement for groups. Andreas Müller
03:39 PM Revision 55236f7f (cdm-dataportal): ref #8596 harmonizing documentation
Andreas Kohlbecker
03:37 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
I don't insist in keeping this function in the ABCD import. I only feared that we lose valuable functionality. theref... Andreas Kohlbecker
03:27 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
I suggest to close this ticket and if needed open a new ticket to discuss the necessity (and best implementation) of ... Andreas Müller
03:09 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
As mentioned by Katja before I do not understand why we need it. It is work to keep such things running and as Katjas... Andreas Müller
01:51 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Katja Luther wrote:
...
> ... But when the problems solved we can reintegrate it to the file import. It is only...
Andreas Kohlbecker
01:33 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Kohlbecker wrote:
> Katja Luther wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
> > >...
Katja Luther
01:23 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > Andreas Kohlbecker wrote:
> > >...
Andreas Kohlbecker
01:14 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
>...
Katja Luther
01:05 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Patrick Plitzner wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > We used the specimen search ...
Andreas Kohlbecker
12:39 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > We used the specimen search for DNA in the Taxeditor. This ...
Patrick Plitzner
11:49 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Müller wrote:
> why did you give this to Lutz? I guess this was a mistake?
OOPS! Thank you for fixing this.
Andreas Kohlbecker
11:47 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
why did you give this to Lutz? I guess this was a mistake? Andreas Müller
11:30 AM bug #8632 (Feedback): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected ...
Andreas Kohlbecker
11:28 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Patrick Plitzner wrote:
> We used the specimen search for DNA in the Taxeditor. This still works so no problems from...
Andreas Kohlbecker
10:13 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
So AK, you may decide if this ticket can be fully closed. But I guess so. Andreas Müller
10:05 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
We used the specimen search for DNA in the Taxeditor. This still works so no problems from my side Patrick Plitzner
03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
Andreas Kohlbecker wrote:
> There is still a problem related to this issue.
>
> The TaxonNavigator is not being r...
Andreas Müller
03:22 PM bug #8659 (New): Taxon navigator: not refreshed after ABCD file import
Copied from #8582
The TaxonNavigator is not being refreshed after importing an ABCD file, newly created classifica...
Andreas Müller
03:19 PM feature request #8596 (Closed): Add a list of descriptions to the taxon page
Patrick Plitzner
01:48 PM feature request #8596: Add a list of descriptions to the taxon page
from my perspective can this ticket be closed. Andreas Kohlbecker
01:46 PM feature request #8596: Add a list of descriptions to the taxon page
Patrick Plitzner wrote:
> Andreas K.: You mentioned that it is possible to assign **weights** to these blocks. Wit...
Andreas Kohlbecker
12:36 PM feature request #8596: Add a list of descriptions to the taxon page
But the tree that I mentioned can be used for both the block here and for the "description detail page" (#8595) Andreas Müller
12:34 PM feature request #8596: Add a list of descriptions to the taxon page
Patrick Plitzner wrote:
> Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here...
Andreas Müller
12:30 PM feature request #8596: Add a list of descriptions to the taxon page
Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here. Just about the order of T... Patrick Plitzner
12:09 PM feature request #8596: Add a list of descriptions to the taxon page
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> Can you please explain this a bit more? Is there a Feature tr...
Andreas Müller
11:57 AM feature request #8596: Add a list of descriptions to the taxon page
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Do we need a configuration method to define the "Description ...
Andreas Müller
11:45 AM feature request #8596: Add a list of descriptions to the taxon page
Andreas Müller wrote:
> Do we need a configuration method to define the "Description (aggregated)" feature tree? Oth...
Andreas Kohlbecker
09:39 AM feature request #8596: Add a list of descriptions to the taxon page
Do we need a configuration method to define the "Description (aggregated)" feature tree? Otherwise it seems to be imp... Andreas Müller
09:22 AM feature request #8596: Add a list of descriptions to the taxon page
Currently only the aggregated descriptions are shown.
What still needs to be implemented is the sort order of this...
Patrick Plitzner
03:18 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
should we put back to "In Progress" or/and move to next milestone? Andreas Müller
12:52 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
after applying the jdk8 memleak fix the effect on the cdm-server is not as good as for the cdmlib-remote-webapp alone... Andreas Kohlbecker
02:32 PM feature request #8595: Create description detail page
Code review notes:
* description.inc#1179 : `$enclosing_tag = cdm_feature_block_element_tag_name($feature_block_se...
Andreas Kohlbecker
12:46 PM feature request #8595: Create description detail page
Added specs from additivity wiki Patrick Plitzner
12:05 PM feature request #8595: Create description detail page
There are still many open issues (most of them discussed in additivity). So we need a follow up ticket. This ticket a... Andreas Müller
11:38 AM feature request #8595 (Feedback): Create description detail page
It is hard to review this ticket since the requirements to the layout of the page are missing in the ticket. Please a... Andreas Kohlbecker
09:20 AM feature request #8595: Create description detail page
Example: http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/description/dc871867-3d87-4fce-b42... Patrick Plitzner
01:34 PM Revision 93666c75 (cdm-dataportal): ref #8596 changing render hint
Andreas Kohlbecker
01:12 PM Revision 0152a834 (cdm-dataportal): adding annotation to doc
Andreas Kohlbecker
01:09 PM bug #8605 (Worksforme): ClassCastException in Feature editor when adding new Defined Term
I can't reproduce this either, so it seems as if this has been fixed in the context of another task Andreas Kohlbecker
11:34 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term
I tested this with the latest nightly on the mentioned database but could not reproduce this behavior. Patrick Plitzner
12:41 PM bug #8225: Deleting one of two type designations removes both
Andreas Müller wrote:
> I change back version as the preliminary fix was done in 5.6 I think. OK?
+1
Patrick Plitzner
10:16 AM bug #8225: Deleting one of two type designations removes both
I change back version as the preliminary fix was done in 5.6 I think. OK? Andreas Müller
10:10 AM bug #8225 (Closed): Deleting one of two type designations removes both
Created a new ticket for a better fix -> #8654 Patrick Plitzner
12:32 PM feature request #8657 (Closed): Order description element in portal according to CharacterTree
Patrick Plitzner
12:13 PM feature request #8656 (Closed): [DISCUSS] Should only characters be allowed for DescriptiveDataSe...
du filterst in aggregateDescription() nur DescriptionElements die Characters als Feature haben. Das
~~~java
desc...
Patrick Plitzner
11:35 AM feature request #8044 (Resolved): Add "Move to..." menu to term editor
Patrick Plitzner
11:15 AM bug #7143 (Closed): Finish not enabled when unprotecting titleCache in new Person dialog
confirmed! Andreas Kohlbecker
09:08 AM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
this is fixed now. Katja Luther
11:09 AM feature request #8238: Allow interoperability between term trees
Moving to next milestone for remaining issues Patrick Plitzner
10:58 AM feature request #6849 (In Progress): [DISCUSS] How to handle "kind of" term creation in TermEditor
Patrick Plitzner
10:21 AM feature request #6849 (Closed): [DISCUSS] How to handle "kind of" term creation in TermEditor
Closing this old discussion because the project ends. Documentation can be found in the ticket description and in the... Patrick Plitzner
10:51 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
Dump deleted as it was not crucial to understand the problem.
Andreas Kohlbecker
10:37 AM feature request #8467: Save a "snapshot" of the SpecimenDescriptions used for aggregation
moving to additivitiy milestone Patrick Plitzner
10:36 AM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
moving to additivitiy milestone Patrick Plitzner
10:23 AM feature request #8655 (Duplicate): Handle duplicates in term tree editor
Copied from #8642:
There is one related issue: if you create a new tree, by default "allow duplicates" is false, w...
Patrick Plitzner
10:22 AM bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model ...
moving to next milestone Patrick Plitzner
10:10 AM task #8130: Check if related feature data is cleared when supported facts type is changed
Move to next milestone for remaining discussion Patrick Plitzner
10:09 AM bug #8654 (New): Find a better solution for deleting type designations
Follow up of #8225 Patrick Plitzner
10:07 AM feature request #6774: Implement OWL export
Move to next milestone because this is still considered experimental Patrick Plitzner
10:06 AM feature request #8248: Implement OWL import
Move to next milestone because this is still considered experimental Patrick Plitzner
09:58 AM bug #8533 (Closed): missing collector and fieldnumber in abcd import
> Why did you move it to 5.12. It has status resolved and should therefore be reviewed in 5.11 milestone. If there is... Patrick Plitzner
08:57 AM Revision bbe6c98f (cdm-server): ref #5048 disabling url caching per instance for jdk1.8 to avoid ...
Andreas Kohlbecker

11/06/2019

10:57 PM feature request #8253: Authors for genus autonyms
Please review Andreas Müller
10:34 PM feature request #8253 (Resolved): Authors for genus autonyms
Applied in changeset commit:cdmlib|6d023e406becd840d1d95a88137f1bccb4a73eed. Andreas Müller
10:34 PM Revision b06c96cf (cdmlib): cleanup
Andreas Müller
10:34 PM Revision 6d023e40 (cdmlib): fix #8253 correct parsing and formatting for authors of infra generic...
Andreas Müller
10:09 PM Revision 09a3e42c (cdmlib): cleanup
Andreas Müller
10:06 PM Revision 029fa839 (cdmlib): cleanup
Andreas Müller
06:13 PM bug #5048 (Resolved): cdm-server causes unusual high native memory consumption for jvm
Applied in changeset commit:cdm-server|d81181d86f476634377346f159ea9edcda67ba38. Andreas Kohlbecker
06:08 PM bug #5048 (In Progress): cdm-server causes unusual high native memory consumption for jvm
Andreas Kohlbecker wrote:
> I will now equip edit-test and edit-integration with the caches.xml workaround to disabl...
Andreas Kohlbecker
05:20 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
I will now equip edit-test and edit-integration with the caches.xml workaround to disable url caching... Andreas Kohlbecker
06:13 PM Revision d81181d8 (cdm-server): fix #5048 disabling url caching for jdk1.8 to avoid memleak
Andreas Kohlbecker
05:06 PM Revision 84503131 (taxeditor): ref #8450 Adjust style of literature description to default descri...
Patrick Plitzner
04:03 PM Revision 2cace77b (taxeditor): ref #7143: fix activation of finish button
Katja Luther
03:53 PM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
I would expect that the finish button is enabled after entering text in the TitleCache field only.
This is not y...
Andreas Kohlbecker
03:46 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > * The "Configure Import Dialog" has changed, and has two issues...
Andreas Kohlbecker
03:31 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Katja Luther wrote:
> the nomenclatural code selection page is removed
Did you add a label to the code selection ...
Andreas Kohlbecker
03:17 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > There are still some problems which are not yet fixed:
> >
>...
Katja Luther
03:04 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Kohlbecker wrote:
> There are still some problems which are not yet fixed:
>
> * the taxon is not part of...
Katja Luther
03:02 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
the nomenclatural code selection page is removed Katja Luther
02:57 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Kohlbecker wrote:
> There are still some problems which are not yet fixed:
>
> * the taxon is not part of...
Katja Luther
09:23 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
There are still some problems which are not yet fixed:
* the taxon is not part of the classification.
* the speci...
Andreas Kohlbecker
03:02 PM Revision 21850e02 (taxeditor): ref #8631: remove nomenclatural code selection page for file import
Katja Luther
02:54 PM task #8652 (Closed): disentangle confusion when connecting to development cdm instance fails
Katja Luther
02:51 PM task #8652: disentangle confusion when connecting to development cdm instance fails
Andreas Kohlbecker wrote:
> apparently these changes are not causing problems.
>
> @Katja: I think the changes th...
Katja Luther
08:57 AM task #8652: disentangle confusion when connecting to development cdm instance fails
apparently these changes are not causing problems.
@Katja: I think the changes that I made to `ExtReferenceSelecti...
Andreas Kohlbecker
02:49 PM feature request #8648 (Resolved): Simplify name details view configuration
default handling is fixed now and labeling is changed as well. Katja Luther
02:13 PM Revision 161cf0e4 (taxeditor): show report for abcd file import
Katja Luther
01:26 PM Revision b5394068 (cdmlib): adding jvmArgs to the maven jetty plugin config to allow for hasslefr...
Andreas Kohlbecker
01:19 PM Revision 6c8d17c5 (taxeditor): ref #8470: export ConstraintViolationException
Katja Luther
01:06 PM feature request #8454 (Closed): Only allow certain patterns as username and groupname
tested it in Editor and it seems to work (tested ' ', 'ö', '*') Katja Luther
01:03 PM feature request #8470 (Resolved): Handle username constraints in user and group editing
Applied in changeset commit:taxeditor|2579d7d6b01fd0879bee9ab3a7621fbe8aec1009. Katja Luther
01:03 PM Revision 2579d7d6 (taxeditor): fix #8470: handle constraint violation exception for username
Katja Luther
12:14 PM Revision 0c9b9bc2 (taxeditor): ref #8450 Fix order of taxon descriptions in matrix
Patrick Plitzner
11:52 AM Revision ed2341ee (cdmlib): ref #8450 Remove description type labels
Patrick Plitzner
11:03 AM Revision 99310e0d (taxeditor): ref #8648: default handling in name details preference - continue
Katja Luther
10:42 AM Revision 37cff480 (taxeditor): ref #8648: default handling in name details preference
Katja Luther
10:20 AM bug #8653 (Resolved): NullPointerException (NPE) when focusing Taxion Name Editor
Katja Luther
10:18 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
Please remove milestone afterwards. It is an milestone internal bugfix. Andreas Müller
10:17 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
As far as I can see this came with one of the latest changes. Should be easy to fix. Important before release. Andreas Müller
09:42 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
Attaching dump of the DB: attachment.cdm_caryophyllales_demo_01.sql.bz2 Andreas Kohlbecker
09:35 AM bug #8653 (Resolved): NullPointerException (NPE) when focusing Taxion Name Editor
* I did the same ABCD import of `Arenaria_ABCD_one_unit.xml`
three times
* Then search for Arenaria serpyllifoli*
...
Andreas Kohlbecker
10:19 AM Revision 00a7ae7a (taxeditor): ref #8648: set default for local, label issues
Katja Luther
10:14 AM Revision d2e01dec (taxeditor): ref #8653: fix NPE
Katja Luther
09:29 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
The question in comment 4 is for Patrick, so I am reassigning this ticket Andreas Kohlbecker
09:27 AM bug #8582 (In Progress): Taxon Navigator: Classification label not refreshed & new taxa not visible
There is still a problem related to this issue.
The TaxonNavigator is not being refreshed after importing an ABCD ...
Andreas Kohlbecker
09:18 AM bug #8650 (Closed): PermissionDenied Exception for Teams when editing distributions
this seems to be a problem of updated caches because of the IPNI import. After running the cache updater the problem ... Katja Luther
09:12 AM bug #8630 (Closed): ClassCastException when ABCD import has finished
The problem is no longer reproducible, closing the issue. Andreas Kohlbecker
09:09 AM bug #8634 (Closed): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator(...
could no longer reproduce the issue, closing the ticket. Andreas Kohlbecker

11/05/2019

05:39 PM Revision 7ef0f93e (cdmlib): ref #8651 rename TransmissionEngineDistribution to DistributionAggreg...
Andreas Müller
05:14 PM Revision ac2cee48 (cdmlib): ref #8651 fix compile error on linux (3rd try)
Andreas Müller
05:07 PM Revision b997cab9 (cdmlib): ref #8651 minor changes to TransmissionEngineDistribution and moving ...
Andreas Müller
05:02 PM Revision 753627ae (cdmlib): ref #8651 fix compile error on linux (2nd try)
Andreas Müller
04:54 PM task #8652 (Resolved): disentangle confusion when connecting to development cdm instance fails
Applied in changeset commit:taxeditor|2456bd7d10249f074c710ec82344610ec9226b5e. Andreas Kohlbecker
04:53 PM task #8652 (Closed): disentangle confusion when connecting to development cdm instance fails
It can be quite cumbersome to find the cause when connecting to a development cdm instance fails.
To connect this wa...
Andreas Kohlbecker
04:54 PM Revision 2456bd7d (taxeditor): fix #8652 cleaning code related to system property cdm.server.dev....
Andreas Kohlbecker
04:51 PM Revision 8b518049 (cdmlib): ref #8651 fix compile error on linux
Andreas Müller
04:39 PM feature request #8613 (Feedback): For distribution editor default reference should be used also w...
Does not work for me yet. The reference field is still empty if I selected a base source and then added a new source.... Andreas Müller
10:00 AM feature request #8613 (Resolved): For distribution editor default reference should be used also w...
this is implemented, please review Katja Luther
04:36 PM feature request #8648: Simplify name details view configuration
Minor issue: can you rename the menu label in DB prefs from "Name Details View" to "Details View". From the given con... Andreas Müller
04:34 PM feature request #8648 (Feedback): Simplify name details view configuration
"Simple Name Details View" have been renamed as expected.
Also removing the field "Show simplified name detials vi...
Andreas Müller
11:35 AM feature request #8648 (Resolved): Simplify name details view configuration
Applied in changeset commit:taxeditor|b99d2118937199a57d8b4907a76eba41de08ed82. Katja Luther
11:24 AM feature request #8648 (Closed): Simplify name details view configuration
mail AM:
Hallo Katja,

ich frage mich gerade, ob wir das Dropdown Feld „Show simplified name detials view with ...
Katja Luther
04:26 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Now the indentation is for both the label and the textfield. but I think for the label it is enough. Otherwise the la... Andreas Müller
04:22 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
The list should always show an empty entry to make it possible to delete the field. Andreas Müller
04:21 PM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
I tried to change the nom code ICNAFP to ICZN for a name but the list did not change even after reopening the taxon. Andreas Müller
01:42 PM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
sorry, the last changes were not pushed, now they are available in the actual nightly build.
the combo box is fill...
Katja Luther
04:21 PM Revision 27b19ff5 (taxeditor): ref #8450 Show description type icons in factual data view
pplitzner
04:21 PM Revision 34ec2ac2 (cdmlib): Fix potential NPE
pplitzner
04:09 PM Revision 771a5159 (cdmlib): cleanup
Andreas Müller
04:09 PM Revision 7c5cb694 (cdmlib): ref #8651 first base classes for unified description aggregation and ...
Andreas Müller
04:07 PM task #8651 (Closed): Unify description aggregation methods (distribution and structured descripti...
Currentyl we have at least 2 methods/classes handling description aggregation, 1 for distribution data called Transmi... Andreas Müller
03:14 PM bug #8650 (Closed): PermissionDenied Exception for Teams when editing distributions
mail of JP:
Hallo Katja, heute bekomme ich ständig diese Fehlermeldung, woran könnte das liegen? Liebe Grüße Jonat...
Katja Luther
03:12 PM bug #8533: missing collector and fieldnumber in abcd import
Why did you move it to 5.12. It has status resolved and should therefore be reviewed in 5.11 milestone. If there is a... Andreas Müller
02:06 PM bug #8498 (In Progress): Set Flags should show the current status of the flags
as we closed #8282, we can use this ticket to find out why there is a delay between setting the flag and getting the ... Katja Luther
02:04 PM feature request #8486 (Closed): Indicating doubtful state in navigator and add set-doubtful to Se...
Katja Luther
01:56 PM bug #8584 (Closed): Appended phrase should be shown on top level for misapplied names
created new ticket for the layout issues (#8649) and close this ticket Katja Luther
01:54 PM feature request #8649 (New): Layout issues for misapplied name/pro parte synonyms
Some open minor issues (open new ticket if not immediately fixable):
* Add identation (whitespace at beginning) f...
Katja Luther
01:52 PM bug #8531: factual data and media view always opened when opening taxon
this is fixed.
Last problem is when the facts view is closed while the distribution editor is already open, then t...
Katja Luther
01:49 PM feature request #8572 (Closed): Rule considered configurable
Katja Luther
01:47 PM feature request #8624 (In Progress): Add abbrev title cache to search in bulk editor
Katja Luther
01:46 PM bug #8626 (Duplicate): NullPointerException (NPE) on saving Specimen Editor (list)
I could not reproduce the problem, but I still keep #7699, so I close this as duplicate Katja Luther
01:44 PM bug #8631 (Resolved): ABCD import fails to put new taxa into the classification, create mediaspec...
Katja Luther
01:41 PM Revision 37811f53 (taxeditor): ref #8410: add only nomenclatural code editions for code of name t...
Katja Luther
01:39 PM Revision b03087a0 (cdmlib): Fix class cast for streams in aggregation
Patrick Plitzner
01:27 PM Revision 6f4ce4b3 (taxeditor): reopen factual data and media view for taxa when opened before
Katja Luther
01:25 PM bug #8622 (Resolved): Missing specimen Identifier leads to empty brackets in portal
Patrick Plitzner
01:25 PM feature request #8596 (Resolved): Add a list of descriptions to the taxon page
Patrick Plitzner
01:25 PM feature request #8467 (Resolved): Save a "snapshot" of the SpecimenDescriptions used for aggregation
Patrick Plitzner
01:24 PM feature request #8625 (Closed): Add count parameter to StateData
This is already used in the aggregation algorithm and works fine Patrick Plitzner
01:21 PM feature request #8595 (Resolved): Create description detail page
Patrick Plitzner
12:42 PM feature request #5873: Implement rights&roles for TaxEditor distribution editor
I reverted some of the changes because it worked only if the user had rights on a subtree. so move the ticket to 5.12 Katja Luther
12:32 PM Revision 8e675e6a (taxeditor): ref #8239: revert some of the implementations for the next release
Katja Luther
11:34 AM Revision 4963861e (taxeditor): ref #8634: fix NPE and biocase provider for dna search
Katja Luther
11:34 AM Revision b99d2118 (taxeditor): fix #8648: simplify name details view
Katja Luther
10:30 AM Revision 7f287710 (cdmlib): cleanup
Andreas Müller
10:21 AM bug #7143 (Resolved): Finish not enabled when unprotecting titleCache in new Person dialog
Katja Luther wrote:
> Andreas Kohlbecker wrote:
>
> With the actual nightly I cannot reproduce this problem anymo...
Andreas Kohlbecker
10:09 AM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
Andreas Kohlbecker wrote:
> Finish is not enabled when only the title cache is filled with data.
>
> Even after e...
Katja Luther
10:07 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Patrick, can you please check if the DNA search is somehow needed in additivity context? I don't expect it but just t... Andreas Müller
09:13 AM bug #8632 (Resolved): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected ...
I removed the possibility to search for DNA for the abcd import because it created exceptions during save and it was ... Katja Luther
09:59 AM Revision 5548f6bc (cdm-dataportal): ref #8595 Fix compile error
Patrick Plitzner
09:56 AM bug #8634 (Resolved): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurato...
this is fixed Katja Luther
09:53 AM Revision 18110d8c (cdm-dataportal): ref #8595 Fix compile error
Patrick Plitzner
09:39 AM Revision d61e49ac (cdm-dataportal): ref #8595 Show specimen titleCache for source descriptions
Patrick Plitzner
09:24 AM Revision 074747bf (cdm-dataportal): ref #8595 Show characters in italic instead of bold
Patrick Plitzner
09:05 AM Revision 1601d218 (cdm-dataportal): ref #8595 Change header label for aggr. descriptions
Patrick Plitzner
09:01 AM bug #8630 (Resolved): ClassCastException when ABCD import has finished
this is fixed. Katja Luther

11/04/2019

10:06 PM Revision 14e5960f (cdmlib): cleanup
Andreas Müller
10:06 PM Revision 0668c27e (cdmlib): better exception handling in MethodMapper
Andreas Müller
06:31 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
a single cdmlib-remote-webapp instance started from within the eclipse ide:
* RSS: 1297,05078125 MB
* heap used:...
Andreas Kohlbecker
06:07 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
timeseries monitoring of the cdm-server running at edit-test with 6 instances:
![](picture464-1.png)
This diagr...
Andreas Kohlbecker
06:16 PM bug #8633: version 5.11 can not connect to workshop servers
As this was only preliminary in 5.11 beta I remove target version Andreas Müller
06:08 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > One more requirement I forgot to mention before:
> >
> > T...
Andreas Müller
03:35 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Müller wrote:
> One more requirement I forgot to mention before:
>
> The list should show only those code...
Andreas Kohlbecker
02:54 PM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
One more requirement I forgot to mention before:
The list should show only those codes which fit to the nomenclatu...
Andreas Müller
02:50 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > Works!
> >
> > Only some layout issues:
> >
> > * ~~Please a...
Andreas Müller
12:48 PM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
Katja Luther
12:05 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Müller wrote:
> Works!
>
> Only some layout issues:
>
> * ~~Please add identation to label to make cl...
Katja Luther
06:05 PM bug #8626 (Feedback): NullPointerException (NPE) on saving Specimen Editor (list)
I guess we can close this as Duplicate for #7699 (or as Workforme if you don't think #7699 is correct). Please remov... Andreas Müller
03:08 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
I remember that it was possible to reproduce this problem on the day when I wrote this ticket. Today, however, the pr... Andreas Kohlbecker
05:48 PM feature request #8647 (New): Allow selecting named areas, ranks, presence-absence terms from term...
It is possible now to create term trees for Named Areas, Presence-Absence-Terms and Ranks (and ofcourse Features).
...
Andreas Müller
04:31 PM bug #8610 (Closed): tagged_text_extract_nomstatus() fails handling more than one status
Andreas Kohlbecker
04:31 PM bug #8610: tagged_text_extract_nomstatus() fails handling more than one status
=Labiatae Juss., Gen. Pl.: 110. 1789, nom. cons.2, nom. altern.2
is now being displayed correctly in the data port...
Andreas Kohlbecker
04:15 PM bug #7143 (Feedback): Finish not enabled when unprotecting titleCache in new Person dialog
Finish is not enabled when only the title cache is filled with data.
Even after entering the family name it still ...
Andreas Kohlbecker
04:08 PM bug #8605: ClassCastException in Feature editor when adding new Defined Term
I extended the ticket descriptions to clarify what I did Andreas Kohlbecker
04:03 PM Revision 4b428921 (cdm-dataportal): ref #8595 Show count for StateData + only show data when stat...
Patrick Plitzner
03:58 PM bug #8374: Save genus generated for a species with a different reference
removed version as this is a duplicate Andreas Müller
03:44 PM feature request #8226 (Closed): make modifiers for description elements configurable
Yes, this works now (except for the issue to be solved in #8236, but this is another ticket) Andreas Müller
10:49 AM feature request #8226 (Resolved): make modifiers for description elements configurable
now it should work. Katja Luther
03:33 PM Revision 879048dd (taxeditor): ref #8642 Change menu oder for tree editors
Patrick Plitzner
03:33 PM feature request #8572 (Feedback): Rule considered configurable
Personally I would give even more indentation (see #8572#note-8). But this is up to you.
Generally we can close th...
Andreas Müller
01:39 PM feature request #8572 (Resolved): Rule considered configurable
I think all open issues are fixed.
* sub preference have more indent
* the label for "Secundum enabled..." is ful...
Katja Luther
03:24 PM feature request #8642 (Feedback): Add tree editor for rank, NamedArea and PresenceAbsence
Generally works. Menu order please like discussed with Feature and Named Area on top, separator, PresenceAbsence, Ran... Andreas Müller
03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
Refreshing obviously is working again. Thanks for fixing. Andreas Kohlbecker
02:38 PM bug #8639: Reorder Names in Preferences
Andreas Kohlbecker wrote:
> I would prefer seeing these entries in alphabetical order.
Alphabetical order is the...
Andreas Müller
01:21 PM bug #8639: Reorder Names in Preferences
I would prefer seeing these entries in alphabetical order.
For me the new suggestion is harder to comprehend than...
Andreas Kohlbecker
02:02 PM Revision 0b52ae5c (cdmlib): revert changes in abcd import test
Katja Luther
01:39 PM Revision 064a8014 (taxeditor): ref #8450 Fix initial expansion state when refreshing matrix
pplitzner
01:37 PM Revision 2d931a85 (cdmlib): ref #8450 Display StateData.count if present
pplitzner
01:36 PM task #8466 (Closed): Delete FeatureTree tables
Andreas Müller
01:22 PM Revision 54c2a6e5 (taxeditor): ref #8572: some more indention for sub preferences
Katja Luther
01:18 PM Revision 5006c242 (taxeditor): ref #8572: rule considered and code edition enable/disable in pref...
Katja Luther
12:57 PM Revision 9b17d62b (taxeditor): layout issues in name details view preference
Katja Luther
12:48 PM Revision 25364108 (taxeditor): ref #8410: add indent to code edition
Katja Luther
10:57 AM bug #8645: rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
Also Term Tree is not the really correct label as the import is for importing the whole ontology for structured descr... Andreas Müller
10:48 AM Revision 6e9bf931 (taxeditor): ref #8226: fix show modifier
Katja Luther
08:47 AM Revision 29b04663 (cdmlib): minor refactoring
pplitzner

11/03/2019

01:36 PM Revision 6cb0766e (cdmlib-apps): ref #8643 multiple changes to adapt FauEuPesiExport to current s...
Andreas Müller

11/02/2019

10:26 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
The diagnosis method described in this article may help analyzing the problem: https://technology.blog.gov.uk/2015/12... Andreas Kohlbecker
05:44 PM bug #8646: Character Details View should provide more information on the structure and property t...
This could be done
a. by extending the label by this information or
b. by showing an infobox when hovering ove...
Andreas Kohlbecker
05:37 PM bug #8646 (New): Character Details View should provide more information on the structure and prop...
It should be possible the get more information on the structure and property term which make up the Character
![]...
Andreas Kohlbecker
05:27 PM bug #8645 (Closed): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
This import function is not a general OWL import.
The information on the nature of the data to be imported must be m...
Andreas Kohlbecker

11/01/2019

05:32 PM task #8644 (New): [PESI][FE] Verify FauEu PESI export
Andreas Müller
05:26 PM feature request #8643 (In Progress): [PESI][FE] Adpat new PESI export to FE requirements
Andreas Müller
05:24 PM feature request #8643 (In Progress): [PESI][FE] Adpat new PESI export to FE requirements
PESI export has changed. FE export still needs to be adapted to these changes Andreas Müller
05:25 PM Revision 0d988e0a (cdmlib-apps): ref #8643 adapt PesiExportActivatorFE to current state
Andreas Müller
05:10 PM Revision bb4d8757 (cdmlib-apps): cleanup
Andreas Müller
05:05 PM Revision 446b1e61 (cdmlib): ref #8450 Set "count" when aggregating StateData
Patrick Plitzner
04:45 PM Revision 882e2c02 (cdm-dataportal): ref #8595 Show aggregation description elements on taxon page
Patrick Plitzner
03:07 PM Revision caacf65b (taxeditor): adapt TaxEditor Test-H2 to model changes v5.11
Andreas Müller
03:06 PM Revision c6865762 (cdm-vaadin): adapt vaadin Test-H2 to model changes v5.11
Andreas Müller
02:55 PM feature request #8642 (Resolved): Add tree editor for rank, NamedArea and PresenceAbsence
Applied in changeset commit:taxeditor|43fdbc98815ef71a54c68fe96a11ea189355accc. Patrick Plitzner
02:52 PM feature request #8642 (Closed): Add tree editor for rank, NamedArea and PresenceAbsence
Patrick Plitzner
02:53 PM Revision 43fdbc98 (taxeditor): fix #8642 Add tree editor for rank, NamedArea and PresenceAbsence
Patrick Plitzner
02:43 PM task #8466 (Resolved): Delete FeatureTree tables
Applied in changeset commit:cdmlib|74b86998eb26eb3fe74b837048f1aa9b1f0b9d3b. Andreas Müller
02:43 PM feature request #8625 (Resolved): Add count parameter to StateData
Applied in changeset commit:cdmlib|320e07b697daddc4133325fdea62ca414e0e582e. Andreas Müller
02:26 PM Revision 5f0a3093 (cdmlib): update H2 test data and model cache
Andreas Müller
02:20 PM Revision 3a1e8815 (cdmlib): cleanup
Andreas Müller
02:10 PM Revision d7c686f4 (cdmlib): ref #8625 add count to StateData to FullCoverageDataGenerator
Andreas Müller
01:28 PM Revision 74b86998 (cdmlib): fix #8466 remove old FeatureTree tables
Andreas Müller
01:27 PM Revision 748cefc1 (cdmlib): cleanup
Andreas Müller
01:26 PM Revision 320e07b6 (cdmlib): fix #8625 add count to StateData
Andreas Müller
12:32 PM Revision 2b8a30e9 (cdmlib): move categorical data up in StateData and cleanup
Andreas Müller
12:11 PM Revision bd074233 (cdmlib): some cleanup for TransmissionEngineDistribution
Andreas Müller
12:10 PM Revision 0ced6c29 (cdmlib): cleanup
Andreas Müller
11:52 AM bug #8582: Taxon Navigator: Classification label not refreshed & new taxa not visible
I guess this should be reviewed. Andreas Müller
11:51 AM bug #8641: IAE (IllegalArgumentException) when exchanging name in taxon details view
It happened when I tried to deduplicate some names in E+M after the IPNI 2019 import Andreas Müller
11:50 AM bug #8641 (New): IAE (IllegalArgumentException) when exchanging name in taxon details view
beim Austausch eines Namens für ein Taxon (also Wiederverwendung von Namen) bekomme ich regelmäßig (aber längst nicht... Andreas Müller
11:43 AM task #8609 (Closed): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
This seems to be fixed and can be closed.
Please reopen if some task is still left.
Andreas Müller
11:38 AM bug #8622 (Feedback): Missing specimen Identifier leads to empty brackets in portal
I will review after release on publication dataportal.
Can you please still add the link to the relevant portal si...
Andreas Müller
11:30 AM feature request #7457 (Closed): E+M: Allow filtering for only published in search
Seems to work.
Note: maybe we also need something like "Only unpublished", but this is another issue and needs an ...
Andreas Müller
11:24 AM bug #8640 (New): Specimen preferences should be disabled if specimens are generally switched off
If "Show specimen related views and menu entries" is switched off the other preferences should be disabled as they pr... Andreas Müller
11:19 AM feature request #8226 (Feedback): make modifiers for description elements configurable
Does not seem to work. If I have all switched on the modifiers do stil not show up. Andreas Müller
11:13 AM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Müller
10:57 AM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Works!
Only some layout issues:
* Please add identation to label to make clear belongs and depends on state of...
Andreas Müller
11:13 AM feature request #8486 (Feedback): Indicating doubtful state in navigator and add set-doubtful to ...
Sometimes I realized that the menu only synchronizes after some time. So if I swith from doubtful to not doubful and ... Andreas Müller
11:08 AM feature request #8486: Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
Katja Luther wrote:
> now doubtful is "??", unplaced "?"
I think it is the other way round. But probably it is be...
Andreas Müller
10:49 AM feature request #8568 (Closed): improve performance for term and vocabulary preference pages
Performance is still not really fast sometimes but definetely acceptable for (seldom used) preferences. So we can clo... Andreas Müller
10:12 AM bug #8639 (New): Reorder Names in Preferences
Currently the order is
* Nomenclatural Code
* Nomenclatural Status
* Ranks
* Type Designations
* Name De...
Andreas Müller
10:03 AM feature request #8572: Rule considered configurable
Andreas Müller wrote:
> Please have some more identation for the sub-preferences on the name details view. Currently...
Andreas Müller
09:56 AM feature request #8572: Rule considered configurable
Andreas Müller wrote:
> The filtering does not work! Neither for project prefs nor for local prefs
A sorry this w...
Andreas Müller
09:55 AM feature request #8572: Rule considered configurable
Please have some more indentation for the sub-preferences on the name details view. Currently it is only ~1/3 of the ... Andreas Müller
09:44 AM feature request #8572: Rule considered configurable
If "rule considered" is not switched on also "Code edition" should be automatically be switched off in the preference... Andreas Müller
09:42 AM feature request #8572: Rule considered configurable
~~The filtering does not work! Neither for project prefs nor for local prefs~~ => see #8572#note-9 Andreas Müller
09:38 AM feature request #8572 (Feedback): Rule considered configurable
Please use human readable version for rule considered. E.g. by using getMessage().
@AK: which method do you use in...
Andreas Müller
09:46 AM bug #8570: PolytomousKeyNode.otherNode missing in REST service response
I will check this after release. We should link the related dataportal example from cuba(?) - see mail WGB. Andreas Müller
09:34 AM bug #8584 (Feedback): Appended phrase should be shown on top level for misapplied names
Andreas Müller
09:34 AM bug #8584: Appended phrase should be shown on top level for misapplied names
Yes the order is correct now and also the selection for top level controls makes sense.
Some open minor issues (op...
Andreas Müller

10/31/2019

03:58 PM Revision 42e926d0 (cdmlib): cleanup
Andreas Müller
03:51 PM Revision 2f18fc04 (cdmlib): cleanup
Andreas Müller
02:29 PM Revision a3314925 (cdmlib): add dummy file to cdmlib-cache/src/test/java to make the folder exist...
Andreas Müller
12:17 PM bug #8638 (New): Session behavior not deterministic
It seems that the behavior of the session cache handling is not deterministic. I did exchange a name for a taxon by a... Andreas Müller
11:27 AM bug #8637 (New): CCE when opening Session View for taxon navigator
When trying to open the session view for the taxon navigator I get the below exception.
I think it is expected tha...
Andreas Müller

10/30/2019

11:39 PM bug #8612 (Closed): Import E+M IPNI names
Andreas Müller
11:38 PM bug #8612 (Resolved): Import E+M IPNI names
Applied in changeset commit:cdmlib-apps|910fd9d6b6d97781707bfd9a6d48a3486975ebc3. Andreas Müller
11:38 PM Revision 910fd9d6 (cdmlib-apps): fix #8612 final changes to E+MIpniImport
Andreas Müller
09:12 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
This is probably the same issue as in #7699 and especially #7699#note-6 Andreas Müller
09:11 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
AK, can you explain how far this ticket is related to the "copied to" ticket #8627 Andreas Müller
01:54 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
Is this behaviour reproducable? I could not reproduce it Katja Luther
04:33 PM Revision 824f5653 (cdmlib): ref #8450 Fix potential NPE
Patrick Plitzner
04:30 PM Revision eb4a043b (cdmlib): ref #8450 Recurse through parent taxon nodes for default description
Patrick Plitzner
03:03 PM bug #8605 (Feedback): ClassCastException in Feature editor when adding new Defined Term
I could not reproduce this exception. But I am not sure what you mean with the 3rd step "choose an existing term (e.g... Patrick Plitzner
02:45 PM bug #8605 (In Progress): ClassCastException in Feature editor when adding new Defined Term
Patrick Plitzner
03:00 PM Revision a2d32af1 (cdmlib): remove whitespace after title for default references with only title ...
Andreas Müller
02:55 PM Revision 4ebcecf9 (cdmlib-apps): ref #8612 implementation of E+MIpniImport (near ready)
Andreas Müller
02:19 PM Revision c2f6e700 (cdmlib): fix test because dna provider is not set as default anymore
Katja Luther
02:00 PM Revision cdbfdfb0 (cdmlib): cleanup
Andreas Müller
02:00 PM Revision 52a42c7d (cdmlib): ref #8612 use better generics for findByExample
Andreas Müller
01:49 PM Revision e28238b0 (cdmlib): add test file
Katja Luther
01:27 PM Revision 0203fed0 (taxeditor): rename cdm instance to database
Katja Luther
01:18 PM Revision 8a720214 (taxeditor): ref #8631: remove the possibility to search for dna when importing...
Katja Luther
01:18 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
As a workaround the possibility to search for dna is disabled for file import. For the biocase seach it is still poss... Katja Luther
10:26 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
The ClassCastException should be solved with the last commit Katja Luther
09:56 AM bug #8631 (In Progress): ABCD import fails to put new taxa into the classification, create medias...
Katja Luther
09:55 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
the media was not imported because of a NPE, this is fixed.
the dna was not associated to the specimen because of wr...
Katja Luther
01:07 PM Revision 4ef89673 (cdmlib): add test for import abcd with search for available dna
Katja Luther
01:07 PM Revision a021cb95 (cdmlib): remove default dna source
Katja Luther
01:05 PM Revision c3d2f6db (cdmlib): change biocase provider to herbar to fix test
Katja Luther
12:04 PM Revision be76eb89 (taxeditor): use same ABCDImportConfiguratorWizardPage for file import and search
Katja Luther
10:21 AM Revision 92546b65 (taxeditor): ref #8631: fix ClassCastException for abcd import and NPE in abcd...
Katja Luther
09:54 AM Revision f7717334 (cdmlib): ref #8631: fix errors in abcd import
Katja Luther

10/29/2019

12:19 AM bug #8636 (New): Handle "Change to Person" same as deduplication
Currently when changing a single person team to a person the action is immediately saved and no new search is running... Andreas Müller
06:14 PM task #8635 (In Progress): install collectd + facette for server monitoring
Andreas Kohlbecker
06:14 PM task #8635 (In Progress): install collectd + facette for server monitoring
We will use collectd + facette for now:
Test installation on edit-test as client and edit-staging as master to c...
Andreas Kohlbecker
05:57 PM bug #8634 (Closed): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator(...

~~~~
login : admin
editor version : 5.11.0.qualifier
server : 160.45.63.230 (edit-WS I) / caryophyllales_demo_01...
Andreas Kohlbecker
05:48 PM bug #8633 (Closed): version 5.11 can not connect to workshop servers
connecting works again - thnx! Andreas Kohlbecker
05:44 PM bug #8633 (Resolved): version 5.11 can not connect to workshop servers
please review whether this is fixed with the last changes Katja Luther
05:14 PM bug #8633 (Closed): version 5.11 can not connect to workshop servers
a picture can tell so much more that 1000 words:
![](picture030-1.png)
this works with version 5.10
Andreas Kohlbecker
05:43 PM Revision df69489f (taxeditor): fix login problem
Katja Luther
04:50 PM bug #8632 (Closed): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in...
same import configuration shown in #8631
Andreas Kohlbecker
03:28 PM bug #8631 (Closed): ABCD import fails to put new taxa into the classification, create mediaspecim...
To reproduce:
* import attachment:Arenaria_ABCD_one_unit.xml with the below options
![](picture367-1.png)
at...
Andreas Kohlbecker
03:08 PM bug #8630 (Closed): ClassCastException when ABCD import has finished
after a ABCD import has run a ClassCastException happens on processing the result data:
~~~
!MESSAGE An internal ...
Andreas Kohlbecker
02:24 PM bug #8629: Specimen editor (tree) new FieldUnit not in hierarchy
The problem I rather a usability problem. The specimen can be dragged onto the field unit to create the hierarchy. Bu... Andreas Kohlbecker
02:16 PM bug #8629 (New): Specimen editor (tree) new FieldUnit not in hierarchy
I created a new field unit for a specimen by doing a right click on the specimen which has no field unit yet and choo... Andreas Kohlbecker
01:53 PM bug #8628 (Closed): Add ORCID as person identifier
WGB:
wir sollten darüber nachdenken, wie wir ORCID Identifier mit Personen verbinden - das wäre ein zusätzliches A...
Andreas Müller
01:25 PM bug #8582 (Resolved): Taxon Navigator: Classification label not refreshed & new taxa not visible
Applied in changeset commit:taxeditor|5f0db2701c5631c2d83e7441fc963adfba5c9f8a. Katja Luther
01:24 PM Revision 5f0db270 (taxeditor): fix #8582: fix refresh in navigator
Katja Luther
01:24 PM bug #8627 (New): NullPointerException (NPE) on saving Specimen Editor (list)
I followed the instrcutions given in Manual-EDIT-Platform-v.1.19b Chapter 4.3.7 and 9.4:
* is started as described...
Andreas Kohlbecker
01:18 PM bug #8626 (Duplicate): NullPointerException (NPE) on saving Specimen Editor (list)
I followed the instrcutions given in Manual-EDIT-Platform-v.1.19b Chapter 4.3.7 and 9.4:
* Start with fresh db car...
Andreas Kohlbecker
01:17 PM bug #8498: Set Flags should show the current status of the flags
this is already done by showing either "set doubtful" or "remove doubtful" as menu item. But there is a problem with ... Katja Luther
12:49 PM bug #7143 (Resolved): Finish not enabled when unprotecting titleCache in new Person dialog
now it should work correctly, please review Katja Luther
12:48 PM Revision 788e46eb (taxeditor): ref #7143: enable finish correctly when titlecache is set
Katja Luther
12:31 PM feature request #8625 (Closed): Add count parameter to StateData
`count` should be used to count the number of states summarized in one StateData
Data example for leaf color:
bla...
Patrick Plitzner
11:53 AM bug #8584 (Resolved): Appended phrase should be shown on top level for misapplied names
please have a look whether the order of the fields make sense. Now all taxon related fields are at the top of the sec... Katja Luther
11:48 AM Revision 9ca58dbb (taxeditor): ref #8584: move appended phrase and publish flag
Katja Luther
11:28 AM feature request #8568 (Resolved): improve performance for term and vocabulary preference pages
please review Katja Luther
10:30 AM feature request #8624 (Closed): Add abbrev title cache to search in bulk editor
The bulk editor results should also contain results for caches containing abbreviations like TeamOrPerson.nomenclatur... Andreas Müller

10/28/2019

07:11 PM feature request #8623: BulkEditors: feedback if search is still running/ready and how many record...
For long time there is a requirement already to show the number of returned records for the bulk editor. This require... Andreas Müller
07:08 PM feature request #8623 (New): BulkEditors: feedback if search is still running/ready and how many ...
Why did you set this to Feedback? Andreas Müller
05:33 PM feature request #8623 (Feedback): BulkEditors: feedback if search is still running/ready and how ...
This is actually working but I was too im patient after hitting enter, the search was already executing but without f... Andreas Kohlbecker
05:16 PM feature request #8623 (New): BulkEditors: feedback if search is still running/ready and how many ...
It would be nice if the search in a BulkEditor would be executed when the user hits `enter` after typing the query st... Andreas Kohlbecker
03:58 PM Revision d02bffd6 (taxeditor): ref #8450 Fix config labels for default matrix values
Patrick Plitzner
12:19 PM Revision 34a22853 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-...
Katja Luther
11:35 AM bug #8622 (Resolved): Missing specimen Identifier leads to empty brackets in portal
Patrick Plitzner
11:35 AM bug #8622 (Closed): Missing specimen Identifier leads to empty brackets in portal
If a specimen has no identifier like accession number, barcode or catalog number there are empty brackets in the spec... Patrick Plitzner
11:21 AM Revision 8241040a (cdmlib): Do not show empty brackets if no identifier is present for specimen
Patrick Plitzner

10/27/2019

07:28 PM feature request #8137: Implement sources for type designations in data portal
Note: isLectopye() was renamed to hasDesignationSource() Andreas Müller

10/26/2019

08:52 AM Revision d2c54d6f (cdmlib): cleanup
Andreas Müller
08:51 AM Revision f270c866 (cdmlib): normalize getAllXXX methods in ReferenceService
Andreas Müller
08:16 AM Revision 24ff7df5 (cdmlib-apps): cleanup
Andreas Müller
08:15 AM Revision b5f5a43c (cdmlib-apps): ref #8612 first implementation of E+MIpniImport
Andreas Müller
08:11 AM Revision 31502678 (cdmlib): cleanup
Andreas Müller
08:10 AM Revision 5899ca52 (cdmlib): ref #8612 add marker type for epublished references
Andreas Müller
08:10 AM Revision 932e616d (cdmlib): ref #8612 add Now to VerbatimTimePeriod factory methods
Andreas Müller
08:09 AM Revision b04afca3 (cdmlib): ref #8612 add addOriginalSpelling to TaxonName
Andreas Müller

10/25/2019

05:50 PM bug #8588: function of TaxonNode context menu 'Copy' is unclear
I like the idea of having something like "Copy classification path" or "Copy hierarchy path" or so. This is something... Andreas Müller
05:37 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Ich meine nicht das verschieben, sondern die Änderung der Semantik. Wir würden ja das jetzige Konzept aufbrechen, das... Andreas Müller
05:25 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> Also dann müssten wir da alles...
Andreas Kohlbecker
05:17 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> > > Übrigens sollten wir über...
Andreas Kohlbecker
04:46 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > Also ich finde das weiterhin gut, die Projektsettings dor...
Andreas Müller
04:41 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > Übrigens sollten wir über ein Recht nachdenken, die DB-P...
Andreas Müller
05:20 PM bug #7143 (In Progress): Finish not enabled when unprotecting titleCache in new Person dialog
Katja can you check the state here.
But we need to be very careful. I remember this has been fixed once but the fi...
Andreas Müller
05:17 PM bug #8597: Name and taxon details: UI counter intuitive regarding cache states
Andreas Kohlbecker wrote:
> The idea of coloring the unused fields can never be applied consistently to the UI
I ...
Andreas Müller
04:58 PM feature request #7417 (Resolved): Make pro parte and partial synonym relationships always visible...
should be fixed already, review is pending. Andreas Kohlbecker
04:33 PM bug #8547 (New): newly created article with new journal does not appear in selection dialog
Is there a reason why you did set as "Feedback" on me? Andreas Müller
04:28 PM bug #8547: newly created article with new journal does not appear in selection dialog
Katja Luther wrote:
> Katja Luther wrote:
> > this problem appears only when the newly created in-reference is not ...
Andreas Müller
03:35 PM bug #8547 (Feedback): newly created article with new journal does not appear in selection dialog
Katja Luther wrote:
> this problem appears only when the newly created in-reference is not of the type journal.
I...
Katja Luther
04:05 PM bug #8621: Do not save empty sources
The question is how to implement. Maybe we simply take all OriginalSource Objects from the session cache and check if... Andreas Müller
03:32 PM bug #8621 (New): Do not save empty sources
In E+M it happened quite often that completely empty sources were created for what ever reason.
We should either de...
Andreas Müller
01:00 PM Revision 9ff7f3d8 (cdmlib-apps): merging fauna Eu - Erms -continue
Katja Luther
12:55 PM bug #7478: Fix pro parte synonym search
Generally it looks like pro parte synonyms can be searched for but the result in the dataportal is not nice. New tick... Andreas Müller
12:46 PM bug #8620 (New): Improve pro parte synonym search for dataportal
mir fällt gerade auf, dass die Suchergebnisse von pro parte Synonymen im Portal (z.B. E+M) noch sehr unschön sind. Da... Andreas Müller
09:07 AM bug #8616: Distribution Editor: allow for hiding columns without data
The table offers the following options on right-click on a column header:
* hide column
* show all columns
may...
Andreas Kohlbecker

10/24/2019

10:59 PM bug #8616: Distribution Editor: allow for hiding columns without data
But definetly I agree that having a saveable projection might really be useful and should be handled with high priori... Andreas Müller
10:46 PM bug #8616 (New): Distribution Editor: allow for hiding columns without data
I agree that it is good to be able to easily return to the same settings as before hand. So we should add the functio... Andreas Müller
04:42 PM bug #8616: Distribution Editor: allow for hiding columns without data
The use case:
The user edits a taxonomic group which has a very specific distribution in a set of subareas and wan...
Andreas Kohlbecker
03:57 PM bug #8616 (Feedback): Distribution Editor: allow for hiding columns without data
Can you describe the use use case when this is really needed a bit more? For taxonomic users I can't really see this ... Andreas Müller
03:07 PM bug #8616 (New): Distribution Editor: allow for hiding columns without data
The Distribution Editor should offer an option to hide those columns which do not have any data. In order to get an o... Andreas Kohlbecker
03:42 PM task #8619 (New): Distribution Selection Dialog: optimize column width for more compact layout
The columns take more space than needed, when showing only ids in the header an cells.
Some means to reduce the c...
Andreas Kohlbecker
03:23 PM task #8618 (New): Distribution Selection Dialog:
add tooltip help texts to all buttons
![](picture489-1.png)
so fat there is only a text for the third button
Andreas Kohlbecker
03:22 PM task #8617 (New): rename Distribution Selection Wizard -> Distribution Selection Dialog
since is not a wizard consisting of multiple steps it should be named "Dialog" Andreas Kohlbecker
01:58 PM bug #8615 (New): Distribution Editor: only available if enabled in local preferences
data base: WS1:carypophyllales_demo_01
The distribution editor is not available in the context menu:
![](pict...
Andreas Kohlbecker
01:46 PM Revision b08a856c (cdm-dataportal): typo in doc
Andreas Kohlbecker
12:49 PM bug #8614 (New): TermEditor: details view does not follow the active term after save
To reproduce:
* Add new Feature term
* select the new term and modify it in the details view: e.g.: select Suppor...
Andreas Kohlbecker
11:46 AM Revision 073285dc (taxeditor): ref #8613: add missing interfaces
Katja Luther
11:45 AM Revision e01ad27b (taxeditor): set flag... should not be enabled for classifications
Katja Luther
11:13 AM Revision c39ae40f (taxeditor): adapt granted authority editor to feature based rights
Katja Luther
11:06 AM Revision df947da5 (taxeditor): ref #8239: disable details for missing rights
Katja Luther
10:06 AM Revision 44d90517 (taxeditor): ref #8613: using default reference also when adding new source in ...
Katja Luther
10:05 AM feature request #8613 (Closed): For distribution editor default reference should be used also whe...
To confirm an existing status in a new source, the default reference should also be added to a distribution when addi... Katja Luther

10/23/2019

02:45 PM feature request #8489: Further issues for DB preferences
Andreas Kohlbecker wrote:
> * when I set the subject to for example "Germany" I find no means to reset it to "Defa...
Andreas Müller
02:34 PM bug #8612 (Closed): Import E+M IPNI names
Andreas Müller
02:32 PM feature request #8611: [DISCUSS] how to handle editor teams
There is already a discussion on this somewhere, either in an email thread or in a ticket.
Needs to be discussed. Ha...
Andreas Müller
10:23 AM feature request #8611 (New): [DISCUSS] how to handle editor teams
mail ERS:
Es geht um das Formular „Edit Team“.
1.) An welcher Stelle kann oder soll ich einem Autorenteam (b...
Katja Luther
12:00 PM feature request #4877: implement setting for choosing the SourceTypes to be shown
in deed, this should be easy to do, priority increased, please increase again once it gets more urgent Andreas Kohlbecker
11:34 AM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, pane...

Mein vorläufiges Fazit aus der Umfrage ist, dass alle "Formular-Felder" Editoren sind, also auch der Details-View...
Andreas Kohlbecker
11:33 AM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, pane...
A poll on editor terms was created on 2019-10-10 : Umfrage https://terminplaner4.dfn.de/enQ2EAH8G7jKtJev Andreas Kohlbecker
10:43 AM Revision 406cc5b9 (cdmlib-apps): remove import TestDatabase
Katja Luther
09:31 AM Revision 5398839e (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-...
Katja Luther
09:30 AM Revision 17d546a5 (cdmlib-apps): ref #1445: smaller changes in activators
Katja Luther
02:13 AM Revision fae562e5 (cdmlib-apps): update E+M mapping csv file
Andreas Müller

10/22/2019

11:03 PM bug #8610 (Resolved): tagged_text_extract_nomstatus() fails handling more than one status
Applied in changeset commit:cdm-dataportal|e9ac7c6f253ee5304766130195b650c9767496bb. Andreas Kohlbecker
10:42 PM bug #8610 (Closed): tagged_text_extract_nomstatus() fails handling more than one status

https://www.europlusmed.org/cdm_dataportal/taxon/5f488ccd-526d-4b0c-833d-2014c51e50a7/synonymy?highlite=86e4601d-22...
Andreas Kohlbecker
11:02 PM Revision e9ac7c6f (cdm-dataportal): fix #8610 tagged_text_extract_nomstatus() can handle multiple...
Andreas Kohlbecker
04:41 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
Andreas Müller wrote:
> ... what about those cases where a dialog pops up and asks if we want to completely delete o...
Andreas Kohlbecker
04:19 PM task #8599 (New): TypeDesignation details pane: clarify function of the remove buttons
About the 2 examples: some whitespace is definetely better then the current solution. If we should use a new button i... Andreas Müller
04:13 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
Andreas Kohlbecker wrote:

> Does the remove button for the Specimen always relally delete the Specimen or is it o...
Andreas Müller
03:51 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
in the second case the layout could be also changed to
![](picture616-1.png)
But this would require to adapt t...
Andreas Kohlbecker
03:45 PM task #8599 (Feedback): TypeDesignation details pane: clarify function of the remove buttons
How about this?
![](picture425-1.png)
this way the button group, which acts on the Specimen, is separated fro...
Andreas Kohlbecker
04:14 PM feature request #8589: Allow undo of typing actions in the textfields
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > We should decide which action to use f...
Andreas Kohlbecker
04:02 PM Revision 38672714 (cdmlib-apps): ref #8479 add import source to FauEu2CDM/CDM-2-CDM import
Andreas Müller
03:57 PM Revision 2e4f981e (cdmlib-apps): cleanup
Andreas Müller
03:22 PM task #8598: Prevent from adding type designations to names with informal ranks
Andreas Müller wrote:
> Not sure if we should implement this.
>
> 1. In E+M there were very rare cases of such na...
Andreas Kohlbecker
03:17 PM bug #8604: Key Editor View: Details for key missing when key is empty
Isn't ist possible to add a FocusListener to the PolytomousKey table like `viewer.getControl().addFocusListener(e -> ... Andreas Kohlbecker
02:45 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Müller wrote:
> Also ich finde das weiterhin gut, die Projektsettings dort zu haben, wo das Projekt admini...
Andreas Kohlbecker
02:35 PM Revision 618fae65 (taxeditor): move source section to the bottom of typedesignation section
Katja Luther
02:12 PM feature request #8569: Supplemental data for PolytomousKeyNodes
Andreas Kohlbecker wrote:
>This approach would also help in case of the Details-View for a taxon where is is require...
Andreas Müller
02:10 PM feature request #8569: Supplemental data for PolytomousKeyNodes
Interesting idea. Lets use the official(?) name accordion (https://en.wikipedia.org/wiki/Accordion_(GUI)).
Only I ...
Andreas Müller
01:14 PM feature request #8569: Supplemental data for PolytomousKeyNodes
Wouldn't it be an option to extend the supplemental data view, so that it can show the data for multiple entities at ... Andreas Kohlbecker
01:50 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
I also agree with solution B. But maybe we can add a comma separated label list of the (server side) selected terms. ... Andreas Müller
12:26 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
> Set back to "normal"
Agreed!
But, freezing the checklist panes is really ugly. You can't even scroll the chec...
Andreas Kohlbecker
01:46 PM Revision 9eaf34b7 (taxeditor): adapt editor to changes in typestatus.isLectotype -> hasDesignatio...
Katja Luther
01:25 PM Revision 4a8d1955 (cdmlib): cleanup
Andreas Müller
01:25 PM Revision 0e32b8d4 (cdmlib): rename isLectotype to hasDesignationSource
Andreas Müller
12:03 PM task #8609 (Resolved): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Katja Luther
12:02 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
2 x +1 von AK und AM Andreas Kohlbecker
12:01 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Im Englischen habe ich es mit Leerzeichen geschrieben, allerdings im Deutschen habe ich Taxonknoten geschrieben, würd... Andreas Kohlbecker
12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
OK, kannst du das erstmal so implementieren. Bei Bedarf können wir es ja nochmal ändern.
AM
Andreas Kohlbecker
12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Hallo,
ich wäre auch eher für TaxonNode Dialog, alle anderen Einträge, die sich Editoren nennen, gehen nicht als D...
Andreas Kohlbecker
12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Hallo,
dem schließe ich mich grundsätzlich an. Ich glaube ich hatte das auch hin- und wieder mal angemerkt. Taxon ...
Andreas Kohlbecker
11:59 AM task #8609 (Closed): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Wizard ist ja eher ein Kette von Dialogen, was sich hier öffnet ist ein einfacher Dialog zum Editieren. ("/... Wizard... Andreas Kohlbecker
11:45 AM feature request #8608 (New): Show message in status bar if linking of taxon in navigator failes
The linking in taxon navoigator failes for taxa without nodes, the check for existing nodes is implemented but we sho... Katja Luther
11:31 AM Revision c6828e67 (taxeditor): fix NoSuchElementException for taxa without nodes - continue
Katja Luther
11:09 AM Revision ffd20969 (taxeditor): fix NoSuchElementException for taxa without nodes
Katja Luther
10:42 AM Revision c6315a5d (taxeditor): rename taxonnode wizard to taxonnode dialogue
Katja Luther
10:41 AM Revision a801b069 (taxeditor): rename taxonnode wizard to taxonnode dialog
Katja Luther

10/21/2019

09:03 PM task #8607: Dataprocessing for GBOL Dataportal/Algaterra
ToDo Henning Kusber:
Specimen Tool: Check & block all data not related to GBOL or Diatom Group research (as discus...
Wolf-Henning Kusber
01:31 PM task #8607 (New): Dataprocessing for GBOL Dataportal/Algaterra
In this ticket we describe the steps for dataprocessing before importing data into the algaterra instance.
Katja Luther
05:39 PM feature request #8137: Implement sources for type designations in data portal
WGB:
es ist richtig, dass es hier zwei Fälle gibt: Solche, die die Quelle des Records angeben (woher kommt die Inf...
Andreas Müller
04:56 PM bug #8604: Key Editor View: Details for key missing when key is empty
Not sure if this is easy to solve. I had discussions on it with Cherian already. As PKs without node are very rare in... Andreas Müller
04:51 PM bug #8571: PolytomousKeyNode.otherNode not editable in TaxEditor
This is probably more or less a duplicate for #2343 so we should check if #2343 can be closed once this is resolved. ... Andreas Müller
02:01 PM Revision 770828ca (cdmlib-apps): cleanup and ref #8587 handle special form as rank for fungi (IF)
Andreas Müller
01:50 PM feature request #8589: Allow undo of typing actions in the textfields
Katja Luther wrote:
> Andreas Müller wrote:
> > We should decide which action to use for undo. To me the most intui...
Andreas Müller
01:44 PM feature request #8589: Allow undo of typing actions in the textfields
Andreas Müller wrote:
> We should decide which action to use for undo. To me the most intuitive is "ESC"-key. Any ot...
Katja Luther
01:47 PM Revision a0aeb474 (taxeditor): ref #8562: fix allow override handling in admin distribution status
Katja Luther
11:52 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term
Personally I cannot reproduce this, but as it is a CCE we should fix it immediately.
PP+KL can you please decide w...
Andreas Müller
11:39 AM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Also ich finde das weiterhin gut, die Projektsettings dort zu haben, wo das Projekt administriert wird und die lokale... Andreas Müller
11:28 AM feature request #4877: implement setting for choosing the SourceTypes to be shown
I wonder why this ticket has so low priority. I think it should be easy to implement and might be of some relevance i... Andreas Müller
11:24 AM bug #8601 (Feedback): checkbox lists in preferences - button to expand, collapse, ... not funci...
The buttons are only not functional if "use default settings" is chosen. Therefore I suggest to either close this tic... Andreas Müller
11:20 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
As discussed in #note-8 and #note-9 this is not critical because not unfucntional, but it needs better UI handling to... Andreas Müller
11:09 AM task #8599: TypeDesignation details pane: clarify function of the remove buttons
This behaviour is the same all over the application so users get used to it once they have ever deleted something or ... Andreas Müller
11:01 AM task #8598: Prevent from adding type designations to names with informal ranks
Not sure if we should implement this.
1. In E+M there were very rare cases of such names with nom. ref. (so there ...
Andreas Müller
10:54 AM Revision ebb98af0 (taxeditor): minor
Katja Luther
10:51 AM Revision 89d6c211 (cdmlib): ref #8458: revert removing of fieldUnitDto list as parameter
Katja Luther

10/20/2019

12:56 PM feature request #8589: Allow undo of typing actions in the textfields
We should decide which action to use for undo. To me the most intuitive is "ESC"-key. Any other suggestions?
Also ...
Andreas Müller

10/18/2019

05:59 PM bug #8606 (New): Feature Editor: new term should be focused and named more prominently
* After adding a new term the term which accidentally is under the cursor is focused, leaving the impression that thi... Andreas Kohlbecker
05:46 PM bug #8605 (Worksforme): ClassCastException in Feature editor when adding new Defined Term
to reproduce
* Use the database `edit-WS I/caryophyllales_demo_01`
* open feature editor: Window > Terms > Featur...
Andreas Kohlbecker
03:54 PM bug #8604 (New): Key Editor View: Details for key missing when key is empty
As long as there are no entries in the key the details view is just blank.
Instead the properties for the key itsel...
Andreas Kohlbecker
02:57 PM bug #8603 (New): Image Details: image preview not working for some sources
The image at this URL https://www.seedlingsandcuttings.eu/media/com_hikashop/upload/lymanbensonia_micrantha_flower_16... Andreas Kohlbecker
12:56 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Hallo Andreas,
am besten besprechen wir das nächste Woche alle zusammen, wenn auch Andreas M. wieder da ist. Da bi...
Andreas Kohlbecker
12:55 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Hallo Katja,
in den meisten Fällen orientiert sich der Aufbau vom Menüs an funktionalen Zusammenhängen. Ein so sta...
Andreas Kohlbecker
12:55 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Hallo Andreas,
wir haben damals alles, was nur als Admin nutzbar sein soll in das Admin Menü geschoben, eben auch ...
Andreas Kohlbecker
12:55 PM task #8602 (New): Discuss: Local Preferences & Server-sided Preferences in same menu?
Hallo,
gibt es einen guten Grund warum die Local Preferences in Window die Server-sided Prefernces in Admin sind?
...
Andreas Kohlbecker
11:17 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
Katja Luther wrote:
> Do you select "Use local settings"? Otherwise the checkbox list is disabled.
>
You are r...
Andreas Kohlbecker
10:56 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
Do you select "Use local settings"? Otherwise the checkbox list is disabled.
That the list is frozen in a strange...
Katja Luther

10/17/2019

06:32 PM feature request #8489: Further issues for DB preferences
I have some more probelms for which I did not find mentioned in here:
![](picture028-1.png)
Further Problem:
...
Andreas Kohlbecker
05:25 PM bug #8601 (Feedback): checkbox lists in preferences - button to expand, collapse, ... not funci...
The button row on top of checkbox lists (Available Languages, Features) are not functional:
![](picture061-1.png)
...
Andreas Kohlbecker
05:20 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
I suggest solving this issue quite soon since it blocks from setting up the editor for effective use. Andreas Kohlbecker
02:40 PM Revision fa53f121 (cdmlib): ref #1445: code cleaning - continue
Katja Luther
02:38 PM Revision 4678a7ed (cdmlib): ref #1445: code cleaning
Katja Luther
02:02 PM Revision e592fdfe (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-...
Katja Luther
02:02 PM Revision c972cf2d (cdmlib-apps): ref #1445: adapt merging activator to changes in cdmlib
Katja Luther
02:01 PM Revision 43892a41 (cdmlib): ref #1445: improve search for identical names
Katja Luther
01:30 PM bug #8600 (Resolved): Taxon Navigator: tree no longer scrolls while draging a taoxn node
Applied in changeset commit:taxeditor|8e64a09b23329e2a903eb57a69ab9861bd9acd79. Katja Luther
01:07 PM bug #8600 (Resolved): Taxon Navigator: tree no longer scrolls while draging a taoxn node
The tree in the Taxon Navigator should automatically scroll when a taxon node is dragged close to the edge of the con... Andreas Kohlbecker
01:29 PM Revision 8e64a09b (taxeditor): fix #8600: enable scrolling for drag & drop
Katja Luther
12:46 PM Revision 9a17a3b1 (taxeditor): adapt tax editor to changes in longrunning task service
Katja Luther
12:37 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
Katja Luther wrote:
> The most right delete button removes the whole type designation and the other delete button re...
Andreas Kohlbecker
12:30 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
The most right delete button removes the whole type designation and the other delete button removes the specimen from... Katja Luther
12:17 PM task #8599 (New): TypeDesignation details pane: clarify function of the remove buttons
The TypeDesignation details pane offers two identical buttons with the trashcan icon, both show "Remove" when hoverin... Andreas Kohlbecker
12:24 PM Revision 67ce7111 (cdm-dataportal): ref #8595 Show associated specimen on description detail page
- drupal formatting code Patrick Plitzner
12:17 PM Revision 0e2ba0e1 (cdmlib): adapt defaultApplicationContext to moved longRunningService
Katja Luther
12:09 PM Revision ca82cffd (cdmlib): move longrunningService to service
Katja Luther
11:52 AM Revision 9d88232c (cdm-dataportal): ref #8595 Fix taxon page TOC
Patrick Plitzner
11:41 AM bug #8591: Multiple representations problem on setting synonym as basionym
If you save before drag it as homotypic synonym, it works.
The person which causes the multiple representation excep...
Katja Luther
11:31 AM Revision 4a3669c6 (cdm-dataportal): ref #8596 Only show TOC entry when data available
Patrick Plitzner
11:20 AM task #8598 (New): Prevent from adding type designations to names with informal ranks
Adding typedesignations to names with informal ranks (species groups and aggregates) should be supressed, whereas re... Andreas Kohlbecker
10:04 AM Revision 5d7a1103 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
10:04 AM Revision 99e61c10 (cdmlib): fix app-import cache updater
Katja Luther

10/16/2019

05:45 PM Revision af9984b8 (cdmlib): ref #8595 Add sources to description init strategy
Patrick Plitzner
05:38 PM Revision 8b384421 (cdm-dataportal): ref #8595 Show clickable sources on description detail page
Patrick Plitzner
04:25 PM bug #8597: Name and taxon details: UI counter intuitive regarding cache states
Ahh, now I understand the problem, it is the TaxonName.titleCache which is still protected.
I completely overlooke...
Andreas Kohlbecker
03:08 PM bug #8597 (New): Name and taxon details: UI counter intuitive regarding cache states
It turned out that the originally reported problem was not a technical one but rather caused by the users sightlessne... Andreas Kohlbecker
03:02 PM Revision e170a53e (cdm-dataportal): ref #8595, #8596 Show list of aggr. descriptions on taxon pag...
Patrick Plitzner
02:59 PM feature request #8596 (Closed): Add a list of descriptions to the taxon page
On the general taxon page the descriptions belonging to this taxon should be listed.
They should be separated by t...
Patrick Plitzner
02:58 PM feature request #8595 (Closed): Create description detail page
Create a description detail page like it already exists for e.g. specimens.
From additivity wiki:
Wir brauchen ...
Patrick Plitzner
09:18 AM bug #8594 (Closed): registration search results page showing: cdm_compose_url(): missing pathPara...
Andreas Kohlbecker
09:06 AM bug #8594 (Resolved): registration search results page showing: cdm_compose_url(): missing pathPa...
Applied in changeset commit:cdm-dataportal|5213125b3da787f8576f6430dd76ebc87d25a0f2. Andreas Kohlbecker
08:37 AM bug #8594 (Closed): registration search results page showing: cdm_compose_url(): missing pathPara...
A drupal error is displayed on pages where registration dtos are shown:
~~~
cdm_compose_url(): missing pathParame...
Andreas Kohlbecker
09:06 AM Revision 5213125b (cdm-dataportal): fix #8594 support for Registration, occurrences, events in cd...
Andreas Kohlbecker
08:48 AM Revision ec49a23d (cdmlib): ref #8450 Add service method to find default description
Patrick Plitzner

10/15/2019

05:23 PM bug #8593 (Duplicate): Name editor: wrong context menu for synonyms
frequently the wrong context menu is shown for synonyms. It looks like the right click is interpreted as right click ... Andreas Kohlbecker
04:24 PM bug #8592 (New): consider renaming menu entry General->Switch User

*Switch User* actually de-connects from the current database and re-displays the connect dialog.
The label *Swi...
Andreas Kohlbecker
03:26 PM bug #8591 (New): Multiple representations problem on setting synonym as basionym
* Database: http://ws1.cybertaxonomy.org/caryophyllales_demo_01]
* EDIT Taxonomic Editor, Version: 5.10.0, Build Dat...
Andreas Kohlbecker
12:44 PM bug #8590 (New): Details view does not show data of new synonym
To reproduce:
* Create new Taxon: Lymanbensonia incachacana (Cárdenas) Barthlott & N.Korotkova in Wildenowia 40(2)...
Andreas Kohlbecker
12:09 PM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
The problem persists, even if a commit exists for this issue. Andreas Kohlbecker
11:58 AM feature request #8589 (New): Allow undo of typing actions in the textfields
This is a request from the EDIT workshop 2013.
typing actions in the textfields as long as the text field is focus...
Andreas Kohlbecker

10/14/2019

03:44 PM bug #8588 (New): function of TaxonNode context menu 'Copy' is unclear
The Copy menu item is places directly after *Delete*. *Delete* removes the taxon node instance but *Copy* does not co... Andreas Kohlbecker
03:30 PM Revision 9cfe15fd (taxeditor): ref #8450 Fix config labels for default matrix values
Patrick Plitzner
11:23 AM Revision 6ca34ebe (taxeditor): ref #8450 Fix imports
Patrick Plitzner
11:07 AM Revision 6bf3f55e (cdmlib): ref #8450 Store default description wrapper in specimen wrapper
pplitzner
11:06 AM Revision 647d3230 (cdmlib): ref #7957 Add (web) service for filtering descriptions by type
Patrick Plitzner
10:53 AM Revision c85838fb (taxeditor): ref #8450 Set config labels according to default values
pplitzner

10/12/2019

12:58 AM Revision d9ece393 (cdmlib-apps): ref #8587 handle null rank names in PESI export a bit better
Andreas Müller
12:56 AM Revision 1363732b (cdmlib-apps): minor
Andreas Müller
12:55 AM Revision 02bf7c25 (cdmlib-apps): ref #2826 fix IF subspecies import, link to genus if species not...
Andreas Müller
12:53 AM Revision b313991f (cdmlib-apps): adapt some classes to new CommonService.getSourcedObjectSByIdInS...
Andreas Müller
12:51 AM Revision 812d0045 (cdmlib): remove old CommonService.getSourcedObjectSByIdInSource
Andreas Müller
11:51 PM Revision e0935f63 (cdmlib-apps): adapt some classes to new CommonService.getSourcedObjectSByIdInS...
Andreas Müller
11:49 PM Revision 3bc8dd61 (cdmlib): add additional method for more specific return type of CommonService....
Andreas Müller
11:04 PM Revision 2d09ccf7 (cdmlib): add more specific return type to CommonService.getSourcedObjectByIdIn...
Andreas Müller
11:02 PM Revision 925afb79 (cdmlib-apps): cleanup
Andreas Müller
05:26 PM Revision a3842bd8 (cdmlib): cleanup
Andreas Müller
12:07 PM Revision 891031f6 (cdmlib): ref #8509, ref #8508 some fixes to E+M PESI export and validation
Andreas Müller
12:06 PM Revision d9f92b40 (cdmlib-apps): ref #8509, ref #8508 some fixes to E+M PESI export and validation
Andreas Müller
12:05 PM Revision 1f9eb0e0 (cdmlib-apps): ref #8509 fix trailing whitespace for reference titleCaches
Andreas Müller
12:01 PM Revision 506f2414 (cdmlib-apps): ref #8577 cleanup E+M PESI validation
Andreas Müller
11:59 AM Revision 8e00239d (cdmlib-apps): ref #8587 adapt IF exporter
Andreas Müller
11:57 AM feature request #8587 (New): [PESI][IF] Implement IF specific CDM export
Open issue:
* For Sordariomycetidae and all children the kingdom can not be defined. See comment in #2717 for reason
Andreas Müller
11:22 AM Revision ffd6058e (cdmlib-apps): ref #2826 cleanup IF import
Andreas Müller

10/11/2019

03:46 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
This is probably mentioned in some "remaining preferences issues" ticket. At least it is known. Can you please check? Andreas Müller
12:15 PM bug #8586 (New): Feature checkbox lists in perferences can neither be modified nor be scrolled
It is not possible to change the state or to scroll the list of checkbox items in the settings for Features, Language... Andreas Kohlbecker
03:44 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
I am sure there is a duplicate ticket for this already. Can you please check. Andreas Müller
11:39 AM feature request #8585 (Closed): Factual Data View: new DesctiptionElements shoud be selected imme...
After creating a new factual data entry (DescriptionElement) in the Factual Data View the new entry should be activat... Andreas Kohlbecker
03:39 PM feature request #8128: Add indicator for feature facts and/or vocabularies which description type...
WGB:
bin mir nicht sicher, ob Gebietsbezeichnungen (geogr., ökol.) features sind, aber sie können sich durchaus a...
Andreas Müller
02:19 PM Revision 8543d48b (cdmlib-apps): cleanup
Andreas Müller
02:19 PM Revision b639d1f2 (cdmlib-apps): ref #8577 updates to the E+M PESI export validation
Andreas Müller
02:19 PM Revision a2a0c1de (cdmlib-apps): ref #2717 some fixes E+M Pesi export
Andreas Müller
02:19 PM Revision f53e8dce (cdmlib-apps): reef #2717 add notNull handling to description export
Andreas Müller
01:48 PM Revision 869b76f8 (cdmlib): ref #2717 improve SimpleFilterMapper to use allowed and not allowed v...
Andreas Müller
01:46 PM Revision 580e88c9 (cdmlib): ref #2717 fix notNull handling in ObjectMapper
Andreas Müller
01:45 PM Revision c0a697ab (cdmlib): ref #2717 improve ExportIgnore and NotYetImplemented and NullMapper
Andreas Müller
01:44 PM Revision da9caa6c (cdmlib): fix annotation mapper includedTypes handling
Andreas Müller
01:44 PM Revision 62262304 (cdmlib): cleanup
Andreas Müller
11:52 AM bug #8581 (Closed): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
I think we do not need a review, so I close this ticket. Katja Luther
11:39 AM bug #8581: Naming inconsitency: Taxon Navigator or Taxonomic Tree?
Applied in changeset commit:taxeditor|10dd6a16ad49bd78857ddd4bb86aa25d5a5cdf30. Katja Luther
11:26 AM bug #8581 (Resolved): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
This change of the name came with the migration to e4. The variable for the title string was name.view.0 (="Taxon Nav... Katja Luther
11:39 AM Revision 10dd6a16 (taxeditor): fix #8581: renaming taxon navigator
Katja Luther
10:11 AM bug #8584: Appended phrase should be shown on top level for misapplied names
Was there a ticket which decided to create a subsection? If yes, please relate it to this ticket. Andreas Müller
10:11 AM bug #8584 (Closed): Appended phrase should be shown on top level for misapplied names
Currently when editing misapplied name relationships in details view the details view has a subsection for taxon info... Andreas Müller
09:42 AM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
As far as I understand the problem, we need to implement the `furtherVotingDescisions(CdmAuthority CdmAuthority, Targ... Andreas Kohlbecker

10/10/2019

08:23 PM feature request #8583: Change Longitude Latitude to Latitude Longitude in Vaadin Geo location
![](picture231-1.png) Wolf-Henning Kusber
08:22 PM feature request #8583 (New): Change Longitude Latitude to Latitude Longitude in Vaadin Geo location
Type Specimen Editor:
Change Longitude/Latitude to Latitude/Longitude in Vaadin Geo location.
Reason: In publicat...
Wolf-Henning Kusber
05:49 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
1. The Classification label is not refreshed in the Taxon Navigator after changing it in the "Classification Wizzard... Andreas Kohlbecker
05:42 PM bug #5670: refresh of Taxon Navigator
I think this ticket needs more details.
Refresh of what? General refresh of all nodes and the classifications?
Andreas Kohlbecker
05:19 PM bug #8545: Name editor: Erroneous status in Status type cannot be made withdrawn
Reason: a valid name (Botany) has no status information, wheras nom. val. is explicitly a zoological status with diff... Wolf-Henning Kusber
05:12 PM bug #8581: Naming inconsitency: Taxon Navigator or Taxonomic Tree?
Can you check when (and why, in which context) it was changed. I can't remember that we decided to rename it.
To m...
Andreas Müller
04:28 PM bug #8581 (Closed): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
The View is named like "Taxonomic Tree" but the menu entry is Window->Show View->"Taxon Navigator"
In the manual "...
Andreas Kohlbecker
03:06 PM EDIT Platform Etablierung task #8580 (In Progress): Update documentation to latest revision of the Taxeditor
Andreas Kohlbecker
03:06 PM EDIT Platform Etablierung task #8580 (In Progress): Update documentation to latest revision of the Taxeditor

Documents to check:
* Manual-EDIT-Platform-01-INSTALL.docx **DONE**
* Manual-EDIT-Platform-02-DEMO.docx
* Manu...
Andreas Kohlbecker
02:58 PM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
Andreas Müller wrote:
> is this only an UI issue or is it also a cdmlib-security issue?
I think this is also a cd...
Katja Luther
12:01 PM Revision 972ff1cf (cdmlib): fix incorrect obligatory handling in DoiMapper and TimePeriodMapper
Andreas Müller
12:00 PM Revision faa0db48 (cdmlib): ref #2717 allow notNull for SingleAttribute mappers (needed for requi...
Andreas Müller
11:58 AM Revision 15cfae05 (cdmlib): ref #2717 fix incorrect error handling in CollectionExportMapping, on...
Andreas Müller
11:56 AM Revision 66925277 (cdmlib): fix incorrect defaultValue handling in BooleanMapper factory method
Andreas Müller
11:55 AM Revision 23720f5f (cdmlib): cleanup
Andreas Müller
10:57 AM Revision e0a12099 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-...
Katja Luther
10:56 AM Revision 3f87d726 (cdmlib-apps): fix compile errors in app-import
Katja Luther
10:11 AM Revision af221f0d (cdmlib-apps): commented 2 lines to make edaphobase compile
Andreas Müller
09:47 AM Revision dd919d85 (cdmlib-apps): reef #2717 better handling of status undefined
Andreas Müller
09:47 AM Revision 9d857396 (cdmlib-apps): ref #2717 add Valencian, High Aragonese, Majorcan and Faroer to ...
Andreas Müller
09:47 AM Revision 8d5e5e53 (cdmlib-apps): cleanup
Andreas Müller
09:47 AM Revision b9dcae47 (cdmlib-apps): cleanup
Andreas Müller
09:32 AM Revision bf7e9675 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-...
Katja Luther
09:31 AM Revision ff5db610 (cdmlib-apps): ref #1445: merging fauna europaea and erms
Katja Luther
 

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