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From 09/27/2019 to 10/26/2019

10/26/2019

08:52 AM Revision d2c54d6f (cdmlib): cleanup
Andreas Müller
08:51 AM Revision f270c866 (cdmlib): normalize getAllXXX methods in ReferenceService
Andreas Müller
08:16 AM Revision 24ff7df5 (cdmlib-apps): cleanup
Andreas Müller
08:15 AM Revision b5f5a43c (cdmlib-apps): ref #8612 first implementation of E+MIpniImport
Andreas Müller
08:11 AM Revision 31502678 (cdmlib): cleanup
Andreas Müller
08:10 AM Revision 5899ca52 (cdmlib): ref #8612 add marker type for epublished references
Andreas Müller
08:10 AM Revision 932e616d (cdmlib): ref #8612 add Now to VerbatimTimePeriod factory methods
Andreas Müller
08:09 AM Revision b04afca3 (cdmlib): ref #8612 add addOriginalSpelling to TaxonName
Andreas Müller

10/25/2019

05:50 PM bug #8588: function of TaxonNode context menu 'Copy' is unclear
I like the idea of having something like "Copy classification path" or "Copy hierarchy path" or so. This is something... Andreas Müller
05:37 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Ich meine nicht das verschieben, sondern die Änderung der Semantik. Wir würden ja das jetzige Konzept aufbrechen, das... Andreas Müller
05:25 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> Also dann müssten wir da alles...
Andreas Kohlbecker
05:17 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> > > Übrigens sollten wir über...
Andreas Kohlbecker
04:46 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > Also ich finde das weiterhin gut, die Projektsettings dor...
Andreas Müller
04:41 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > Übrigens sollten wir über ein Recht nachdenken, die DB-P...
Andreas Müller
05:20 PM bug #7143 (In Progress): Finish not enabled when unprotecting titleCache in new Person dialog
Katja can you check the state here.
But we need to be very careful. I remember this has been fixed once but the fi...
Andreas Müller
05:17 PM bug #8597: Name and taxon details: UI counter intuitive regarding cache states
Andreas Kohlbecker wrote:
> The idea of coloring the unused fields can never be applied consistently to the UI
I ...
Andreas Müller
04:58 PM feature request #7417 (Resolved): Make pro parte and partial synonym relationships always visible in data portals
should be fixed already, review is pending. Andreas Kohlbecker
04:33 PM bug #8547 (New): Default type of a newly created inReference should depend on the type of the reference
Is there a reason why you did set as "Feedback" on me? Andreas Müller
04:28 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
Katja Luther wrote:
> Katja Luther wrote:
> > this problem appears only when the newly created in-reference is not ...
Andreas Müller
03:35 PM bug #8547 (Feedback): Default type of a newly created inReference should depend on the type of the reference
Katja Luther wrote:
> this problem appears only when the newly created in-reference is not of the type journal.
I...
Katja Luther
04:05 PM bug #8621: Do not save empty sources
The question is how to implement. Maybe we simply take all OriginalSource Objects from the session cache and check if... Andreas Müller
03:32 PM bug #8621 (New): Do not save empty sources
In E+M it happened quite often that completely empty sources were created for what ever reason.
We should either de...
Andreas Müller
01:00 PM Revision 9ff7f3d8 (cdmlib-apps): merging fauna Eu - Erms -continue
Katja Luther
12:55 PM bug #7478: Fix pro parte synonym search
Generally it looks like pro parte synonyms can be searched for but the result in the dataportal is not nice. New tick... Andreas Müller
12:46 PM bug #8620 (New): Improve pro parte synonym search result for dataportal
mir fällt gerade auf, dass die Suchergebnisse von pro parte Synonymen im Portal (z.B. E+M) noch sehr unschön sind. Da... Andreas Müller
09:07 AM bug #8616: Distribution Editor: allow for hiding columns without data
The table offers the following options on right-click on a column header:
* hide column
* show all columns
may...
Andreas Kohlbecker

10/24/2019

10:59 PM bug #8616: Distribution Editor: allow for hiding columns without data
But definetly I agree that having a saveable projection might really be useful and should be handled with high priori... Andreas Müller
10:46 PM bug #8616 (New): Distribution Editor: allow for hiding columns without data
I agree that it is good to be able to easily return to the same settings as before hand. So we should add the functio... Andreas Müller
04:42 PM bug #8616: Distribution Editor: allow for hiding columns without data
The use case:
The user edits a taxonomic group which has a very specific distribution in a set of subareas and wan...
Andreas Kohlbecker
03:57 PM bug #8616 (Feedback): Distribution Editor: allow for hiding columns without data
Can you describe the use use case when this is really needed a bit more? For taxonomic users I can't really see this ... Andreas Müller
03:07 PM bug #8616 (New): Distribution Editor: allow for hiding columns without data
The Distribution Editor should offer an option to hide those columns which do not have any data. In order to get an o... Andreas Kohlbecker
03:42 PM task #8619 (New): Distribution Selection Dialog: optimize column width for more compact layout
The columns take more space than needed, when showing only ids in the header an cells.
Some means to reduce the c...
Andreas Kohlbecker
03:23 PM task #8618 (New): Distribution Selection Dialog:
add tooltip help texts to all buttons
![](picture489-1.png)
so fat there is only a text for the third button
Andreas Kohlbecker
03:22 PM task #8617 (New): rename Distribution Selection Wizard -> Distribution Selection Dialog
since is not a wizard consisting of multiple steps it should be named "Dialog" Andreas Kohlbecker
01:58 PM bug #8615 (New): Distribution Editor: only available if enabled in local preferences
data base: WS1:carypophyllales_demo_01
The distribution editor is not available in the context menu:
![](pict...
Andreas Kohlbecker
01:46 PM Revision b08a856c (cdm-dataportal): typo in doc
Andreas Kohlbecker
12:49 PM bug #8614 (New): TermEditor: details view does not follow the active term after save
To reproduce:
* Add new Feature term
* select the new term and modify it in the details view: e.g.: select Suppor...
Andreas Kohlbecker
11:46 AM Revision 073285dc (taxeditor): ref #8613: add missing interfaces
Katja Luther
11:45 AM Revision e01ad27b (taxeditor): set flag... should not be enabled for classifications
Katja Luther
11:13 AM Revision c39ae40f (taxeditor): adapt granted authority editor to feature based rights
Katja Luther
11:06 AM Revision df947da5 (taxeditor): ref #8239: disable details for missing rights
Katja Luther
10:06 AM Revision 44d90517 (taxeditor): ref #8613: using default reference also when adding new source in distribution editor
Katja Luther
10:05 AM feature request #8613 (Closed): For distribution editor default reference should be used also when new source is created
To confirm an existing status in a new source, the default reference should also be added to a distribution when addi... Katja Luther

10/23/2019

02:45 PM feature request #8489: Further issues for DB preferences
Andreas Kohlbecker wrote:
> * when I set the subject to for example "Germany" I find no means to reset it to "Defa...
Andreas Müller
02:34 PM bug #8612 (Closed): Import E+M IPNI names
Andreas Müller
02:32 PM feature request #8611: [DISCUSS] how to handle editor teams
There is already a discussion on this somewhere, either in an email thread or in a ticket.
Needs to be discussed. Ha...
Andreas Müller
10:23 AM feature request #8611 (New): [DISCUSS] how to handle editor teams
mail ERS:
Es geht um das Formular „Edit Team“.
1.) An welcher Stelle kann oder soll ich einem Autorenteam (b...
Katja Luther
12:00 PM feature request #4877: implement setting for choosing the SourceTypes to be shown
in deed, this should be easy to do, priority increased, please increase again once it gets more urgent Andreas Kohlbecker
11:34 AM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)

Mein vorläufiges Fazit aus der Umfrage ist, dass alle "Formular-Felder" Editoren sind, also auch der Details-View...
Andreas Kohlbecker
11:33 AM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)
A poll on editor terms was created on 2019-10-10 : Umfrage https://terminplaner4.dfn.de/enQ2EAH8G7jKtJev Andreas Kohlbecker
10:43 AM Revision 406cc5b9 (cdmlib-apps): remove import TestDatabase
Katja Luther
09:31 AM Revision 5398839e (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
Katja Luther
09:30 AM Revision 17d546a5 (cdmlib-apps): ref #1445: smaller changes in activators
Katja Luther
02:13 AM Revision fae562e5 (cdmlib-apps): update E+M mapping csv file
Andreas Müller

10/22/2019

11:03 PM bug #8610 (Resolved): tagged_text_extract_nomstatus() fails handling more than one status
Applied in changeset commit:cdm-dataportal|e9ac7c6f253ee5304766130195b650c9767496bb. Andreas Kohlbecker
10:42 PM bug #8610 (Closed): tagged_text_extract_nomstatus() fails handling more than one status

https://www.europlusmed.org/cdm_dataportal/taxon/5f488ccd-526d-4b0c-833d-2014c51e50a7/synonymy?highlite=86e4601d-22...
Andreas Kohlbecker
11:02 PM Revision e9ac7c6f (cdm-dataportal): fix #8610 tagged_text_extract_nomstatus() can handle multiple status
Andreas Kohlbecker
04:41 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
Andreas Müller wrote:
> ... what about those cases where a dialog pops up and asks if we want to completely delete o...
Andreas Kohlbecker
04:19 PM task #8599 (New): TypeDesignation details pane: clarify function of the remove buttons
About the 2 examples: some whitespace is definetely better then the current solution. If we should use a new button i... Andreas Müller
04:13 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
Andreas Kohlbecker wrote:

> Does the remove button for the Specimen always relally delete the Specimen or is it o...
Andreas Müller
03:51 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
in the second case the layout could be also changed to
![](picture616-1.png)
But this would require to adapt t...
Andreas Kohlbecker
03:45 PM task #8599 (Feedback): TypeDesignation details pane: clarify function of the remove buttons
How about this?
![](picture425-1.png)
this way the button group, which acts on the Specimen, is separated fro...
Andreas Kohlbecker
04:14 PM feature request #8589: Allow undo of typing actions in the textfields
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > We should decide which action to use f...
Andreas Kohlbecker
04:02 PM Revision 38672714 (cdmlib-apps): ref #8479 add import source to FauEu2CDM/CDM-2-CDM import
Andreas Müller
03:57 PM Revision 2e4f981e (cdmlib-apps): cleanup
Andreas Müller
03:22 PM task #8598: Prevent from adding type designations to names with informal ranks
Andreas Müller wrote:
> Not sure if we should implement this.
>
> 1. In E+M there were very rare cases of such na...
Andreas Kohlbecker
03:17 PM bug #8604: Key Editor View: Details for key missing when key is empty
Isn't ist possible to add a FocusListener to the PolytomousKey table like `viewer.getControl().addFocusListener(e -> ... Andreas Kohlbecker
02:45 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Andreas Müller wrote:
> Also ich finde das weiterhin gut, die Projektsettings dort zu haben, wo das Projekt admini...
Andreas Kohlbecker
02:35 PM Revision 618fae65 (taxeditor): move source section to the bottom of typedesignation section
Katja Luther
02:12 PM feature request #8569: Supplemental data for PolytomousKeyNodes
Andreas Kohlbecker wrote:
>This approach would also help in case of the Details-View for a taxon where is is require...
Andreas Müller
02:10 PM feature request #8569: Supplemental data for PolytomousKeyNodes
Interesting idea. Lets use the official(?) name accordion (https://en.wikipedia.org/wiki/Accordion_(GUI)).
Only I ...
Andreas Müller
01:14 PM feature request #8569: Supplemental data for PolytomousKeyNodes
Wouldn't it be an option to extend the supplemental data view, so that it can show the data for multiple entities at ... Andreas Kohlbecker
01:50 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
I also agree with solution B. But maybe we can add a comma separated label list of the (server side) selected terms. ... Andreas Müller
12:26 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
> Set back to "normal"
Agreed!
But, freezing the checklist panes is really ugly. You can't even scroll the chec...
Andreas Kohlbecker
01:46 PM Revision 9eaf34b7 (taxeditor): adapt editor to changes in typestatus.isLectotype -> hasDesignationSourcve
Katja Luther
01:25 PM Revision 4a8d1955 (cdmlib): cleanup
Andreas Müller
01:25 PM Revision 0e32b8d4 (cdmlib): rename isLectotype to hasDesignationSource
Andreas Müller
12:03 PM task #8609 (Resolved): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Katja Luther
12:02 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
2 x +1 von AK und AM Andreas Kohlbecker
12:01 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Im Englischen habe ich es mit Leerzeichen geschrieben, allerdings im Deutschen habe ich Taxonknoten geschrieben, würd... Andreas Kohlbecker
12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
OK, kannst du das erstmal so implementieren. Bei Bedarf können wir es ja nochmal ändern.
AM
Andreas Kohlbecker
12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Hallo,
ich wäre auch eher für TaxonNode Dialog, alle anderen Einträge, die sich Editoren nennen, gehen nicht als D...
Andreas Kohlbecker
12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Hallo,
dem schließe ich mich grundsätzlich an. Ich glaube ich hatte das auch hin- und wieder mal angemerkt. Taxon ...
Andreas Kohlbecker
11:59 AM task #8609 (Closed): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
Wizard ist ja eher ein Kette von Dialogen, was sich hier öffnet ist ein einfacher Dialog zum Editieren. ("/... Wizard... Andreas Kohlbecker
11:45 AM feature request #8608 (New): Show message in status bar if linking of taxon in navigator failes
The linking in taxon navoigator failes for taxa without nodes, the check for existing nodes is implemented but we sho... Katja Luther
11:31 AM Revision c6828e67 (taxeditor): fix NoSuchElementException for taxa without nodes - continue
Katja Luther
11:09 AM Revision ffd20969 (taxeditor): fix NoSuchElementException for taxa without nodes
Katja Luther
10:42 AM Revision c6315a5d (taxeditor): rename taxonnode wizard to taxonnode dialogue
Katja Luther
10:41 AM Revision a801b069 (taxeditor): rename taxonnode wizard to taxonnode dialog
Katja Luther

10/21/2019

09:03 PM task #8607: Dataprocessing for GBOL Dataportal/Algaterra
ToDo Henning Kusber:
Specimen Tool: Check & block all data not related to GBOL or Diatom Group research (as discus...
Wolf-Henning Kusber
01:31 PM task #8607 (New): Dataprocessing for GBOL Dataportal/Algaterra
In this ticket we describe the steps for dataprocessing before importing data into the algaterra instance.
Katja Luther
05:39 PM feature request #8137: Implement sources for type designations in data portal
WGB:
es ist richtig, dass es hier zwei Fälle gibt: Solche, die die Quelle des Records angeben (woher kommt die Inf...
Andreas Müller
04:56 PM bug #8604: Key Editor View: Details for key missing when key is empty
Not sure if this is easy to solve. I had discussions on it with Cherian already. As PKs without node are very rare in... Andreas Müller
04:51 PM bug #8571: PolytomousKeyNode.otherNode not editable in TaxEditor
This is probably more or less a duplicate for #2343 so we should check if #2343 can be closed once this is resolved. ... Andreas Müller
02:01 PM Revision 770828ca (cdmlib-apps): cleanup and ref #8587 handle special form as rank for fungi (IF)
Andreas Müller
01:50 PM feature request #8589: Allow undo of typing actions in the textfields
Katja Luther wrote:
> Andreas Müller wrote:
> > We should decide which action to use for undo. To me the most intui...
Andreas Müller
01:44 PM feature request #8589: Allow undo of typing actions in the textfields
Andreas Müller wrote:
> We should decide which action to use for undo. To me the most intuitive is "ESC"-key. Any ot...
Katja Luther
01:47 PM Revision a0aeb474 (taxeditor): ref #8562: fix allow override handling in admin distribution status
Katja Luther
11:52 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term
Personally I cannot reproduce this, but as it is a CCE we should fix it immediately.
PP+KL can you please decide w...
Andreas Müller
11:39 AM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Also ich finde das weiterhin gut, die Projektsettings dort zu haben, wo das Projekt administriert wird und die lokale... Andreas Müller
11:28 AM feature request #4877: implement setting for choosing the SourceTypes to be shown
I wonder why this ticket has so low priority. I think it should be easy to implement and might be of some relevance i... Andreas Müller
11:24 AM bug #8601 (Feedback): checkbox lists in preferences - button to expand, collapse, ... not functional
The buttons are only not functional if "use default settings" is chosen. Therefore I suggest to either close this tic... Andreas Müller
11:20 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
As discussed in #note-8 and #note-9 this is not critical because not unfucntional, but it needs better UI handling to... Andreas Müller
11:09 AM task #8599: TypeDesignation details pane: clarify function of the remove buttons
This behaviour is the same all over the application so users get used to it once they have ever deleted something or ... Andreas Müller
11:01 AM task #8598: Prevent from adding type designations to names with informal ranks
Not sure if we should implement this.
1. In E+M there were very rare cases of such names with nom. ref. (so there ...
Andreas Müller
10:54 AM Revision ebb98af0 (taxeditor): minor
Katja Luther
10:51 AM Revision 89d6c211 (cdmlib): ref #8458: revert removing of fieldUnitDto list as parameter
Katja Luther

10/20/2019

12:56 PM feature request #8589: Allow undo of typing actions in the textfields
We should decide which action to use for undo. To me the most intuitive is "ESC"-key. Any other suggestions?
Also ...
Andreas Müller

10/18/2019

05:59 PM bug #8606 (New): Feature Editor: new term should be focused and named more prominently
* After adding a new term the term which accidentally is under the cursor is focused, leaving the impression that thi... Andreas Kohlbecker
05:46 PM bug #8605 (Worksforme): ClassCastException in Feature editor when adding new Defined Term
to reproduce
* Use the database `edit-WS I/caryophyllales_demo_01`
* open feature editor: Window > Terms > Featur...
Andreas Kohlbecker
03:54 PM bug #8604 (New): Key Editor View: Details for key missing when key is empty
As long as there are no entries in the key the details view is just blank.
Instead the properties for the key itsel...
Andreas Kohlbecker
02:57 PM bug #8603 (New): Image Details: image preview not working for some sources
The image at this URL https://www.seedlingsandcuttings.eu/media/com_hikashop/upload/lymanbensonia_micrantha_flower_16... Andreas Kohlbecker
12:56 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Hallo Andreas,
am besten besprechen wir das nächste Woche alle zusammen, wenn auch Andreas M. wieder da ist. Da bi...
Andreas Kohlbecker
12:55 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Hallo Katja,
in den meisten Fällen orientiert sich der Aufbau vom Menüs an funktionalen Zusammenhängen. Ein so sta...
Andreas Kohlbecker
12:55 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
Hallo Andreas,
wir haben damals alles, was nur als Admin nutzbar sein soll in das Admin Menü geschoben, eben auch ...
Andreas Kohlbecker
12:55 PM task #8602 (New): Discuss: Local Preferences & Server-sided Preferences in same menu?
Hallo,
gibt es einen guten Grund warum die Local Preferences in Window die Server-sided Prefernces in Admin sind?
...
Andreas Kohlbecker
11:17 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
Katja Luther wrote:
> Do you select "Use local settings"? Otherwise the checkbox list is disabled.
>
You are r...
Andreas Kohlbecker
10:56 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
Do you select "Use local settings"? Otherwise the checkbox list is disabled.
That the list is frozen in a strange...
Katja Luther

10/17/2019

06:32 PM feature request #8489: Further issues for DB preferences
I have some more probelms for which I did not find mentioned in here:
![](picture028-1.png)
Further Problem:
...
Andreas Kohlbecker
05:25 PM bug #8601 (Feedback): checkbox lists in preferences - button to expand, collapse, ... not functional
The button row on top of checkbox lists (Available Languages, Features) are not functional:
![](picture061-1.png)
...
Andreas Kohlbecker
05:20 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
I suggest solving this issue quite soon since it blocks from setting up the editor for effective use. Andreas Kohlbecker
02:40 PM Revision fa53f121 (cdmlib): ref #1445: code cleaning - continue
Katja Luther
02:38 PM Revision 4678a7ed (cdmlib): ref #1445: code cleaning
Katja Luther
02:02 PM Revision e592fdfe (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
Katja Luther
02:02 PM Revision c972cf2d (cdmlib-apps): ref #1445: adapt merging activator to changes in cdmlib
Katja Luther
02:01 PM Revision 43892a41 (cdmlib): ref #1445: improve search for identical names
Katja Luther
01:30 PM bug #8600 (Resolved): Taxon Navigator: tree no longer scrolls while draging a taxon node
Applied in changeset commit:taxeditor|8e64a09b23329e2a903eb57a69ab9861bd9acd79. Katja Luther
01:07 PM bug #8600 (Closed): Taxon Navigator: tree no longer scrolls while draging a taxon node
The tree in the Taxon Navigator should automatically scroll when a taxon node is dragged close to the edge of the con... Andreas Kohlbecker
01:29 PM Revision 8e64a09b (taxeditor): fix #8600: enable scrolling for drag & drop
Katja Luther
12:46 PM Revision 9a17a3b1 (taxeditor): adapt tax editor to changes in longrunning task service
Katja Luther
12:37 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
Katja Luther wrote:
> The most right delete button removes the whole type designation and the other delete button re...
Andreas Kohlbecker
12:30 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
The most right delete button removes the whole type designation and the other delete button removes the specimen from... Katja Luther
12:17 PM task #8599 (New): TypeDesignation details pane: clarify function of the remove buttons
The TypeDesignation details pane offers two identical buttons with the trashcan icon, both show "Remove" when hoverin... Andreas Kohlbecker
12:24 PM Revision 67ce7111 (cdm-dataportal): ref #8595 Show associated specimen on description detail page
- drupal formatting code Patrick Plitzner
12:17 PM Revision 0e2ba0e1 (cdmlib): adapt defaultApplicationContext to moved longRunningService
Katja Luther
12:09 PM Revision ca82cffd (cdmlib): move longrunningService to service
Katja Luther
11:52 AM Revision 9d88232c (cdm-dataportal): ref #8595 Fix taxon page TOC
Patrick Plitzner
11:41 AM bug #8591: Multiple representations problem on setting synonym as basionym
If you save before drag it as homotypic synonym, it works.
The person which causes the multiple representation excep...
Katja Luther
11:31 AM Revision 4a3669c6 (cdm-dataportal): ref #8596 Only show TOC entry when data available
Patrick Plitzner
11:20 AM task #8598 (New): Prevent from adding type designations to names with informal ranks
Adding typedesignations to names with informal ranks (species groups and aggregates) should be supressed, whereas re... Andreas Kohlbecker
10:04 AM Revision 5d7a1103 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther
10:04 AM Revision 99e61c10 (cdmlib): fix app-import cache updater
Katja Luther

10/16/2019

05:45 PM Revision af9984b8 (cdmlib): ref #8595 Add sources to description init strategy
Patrick Plitzner
05:38 PM Revision 8b384421 (cdm-dataportal): ref #8595 Show clickable sources on description detail page
Patrick Plitzner
04:25 PM bug #8597: Name and taxon details: UI counter intuitive regarding cache states
Ahh, now I understand the problem, it is the TaxonName.titleCache which is still protected.
I completely overlooke...
Andreas Kohlbecker
03:08 PM bug #8597 (New): Name and taxon details: UI counter intuitive regarding cache states
It turned out that the originally reported problem was not a technical one but rather caused by the users sightlessne... Andreas Kohlbecker
03:02 PM Revision e170a53e (cdm-dataportal): ref #8595, #8596 Show list of aggr. descriptions on taxon page and link to detail page
Patrick Plitzner
02:59 PM feature request #8596 (Closed): Add a list of descriptions to the taxon page
On the general taxon page the descriptions belonging to this taxon should be listed.
They should be separated by t...
Patrick Plitzner
02:58 PM feature request #8595 (Closed): Create description detail page
Create a description detail page like it already exists for e.g. specimens.
From additivity wiki:
Wir brauchen ...
Patrick Plitzner
09:18 AM bug #8594 (Closed): registration search results page showing: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
Andreas Kohlbecker
09:06 AM bug #8594 (Resolved): registration search results page showing: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
Applied in changeset commit:cdm-dataportal|5213125b3da787f8576f6430dd76ebc87d25a0f2. Andreas Kohlbecker
08:37 AM bug #8594 (Closed): registration search results page showing: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
A drupal error is displayed on pages where registration dtos are shown:
~~~
cdm_compose_url(): missing pathParame...
Andreas Kohlbecker
09:06 AM Revision 5213125b (cdm-dataportal): fix #8594 support for Registration, occurrences, events in cdm_base_url(), sanitizing base ulrs in cdm_tagged_text_expand_entity_references() & better problem reporting
Andreas Kohlbecker
08:48 AM Revision ec49a23d (cdmlib): ref #8450 Add service method to find default description
Patrick Plitzner

10/15/2019

05:23 PM bug #8593 (Duplicate): Name editor: wrong context menu for synonyms
frequently the wrong context menu is shown for synonyms. It looks like the right click is interpreted as right click ... Andreas Kohlbecker
04:24 PM bug #8592 (New): consider renaming menu entry General->Switch User

*Switch User* actually de-connects from the current database and re-displays the connect dialog.
The label *Swi...
Andreas Kohlbecker
03:26 PM bug #8591 (Closed): Multiple representations problem on setting synonym as basionym
* Database: http://ws1.cybertaxonomy.org/caryophyllales_demo_01]
* EDIT Taxonomic Editor, Version: 5.10.0, Build Dat...
Andreas Kohlbecker
12:44 PM bug #8590 (Duplicate): Details view does not show data of new synonym
To reproduce:
* Create new Taxon: Lymanbensonia incachacana (Cárdenas) Barthlott & N.Korotkova in Wildenowia 40(2)...
Andreas Kohlbecker
12:09 PM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
The problem persists, even if a commit exists for this issue. Andreas Kohlbecker
11:58 AM feature request #8589 (New): Allow undo of typing actions in the textfields
This is a request from the EDIT workshop 2013.
typing actions in the textfields as long as the text field is focus...
Andreas Kohlbecker

10/14/2019

03:44 PM bug #8588 (New): function of TaxonNode context menu 'Copy' is unclear
The Copy menu item is places directly after *Delete*. *Delete* removes the taxon node instance but *Copy* does not co... Andreas Kohlbecker
03:30 PM Revision 9cfe15fd (taxeditor): ref #8450 Fix config labels for default matrix values
Patrick Plitzner
11:23 AM Revision 6ca34ebe (taxeditor): ref #8450 Fix imports
Patrick Plitzner
11:07 AM Revision 6bf3f55e (cdmlib): ref #8450 Store default description wrapper in specimen wrapper
pplitzner
11:06 AM Revision 647d3230 (cdmlib): ref #7957 Add (web) service for filtering descriptions by type
Patrick Plitzner
10:53 AM Revision c85838fb (taxeditor): ref #8450 Set config labels according to default values
pplitzner

10/13/2019

12:58 AM Revision d9ece393 (cdmlib-apps): ref #8587 handle null rank names in PESI export a bit better
Andreas Müller
12:56 AM Revision 1363732b (cdmlib-apps): minor
Andreas Müller
12:55 AM Revision 02bf7c25 (cdmlib-apps): ref #2826 fix IF subspecies import, link to genus if species not exists
Andreas Müller
12:53 AM Revision b313991f (cdmlib-apps): adapt some classes to new CommonService.getSourcedObjectSByIdInSource and cleanup
Andreas Müller
12:51 AM Revision 812d0045 (cdmlib): remove old CommonService.getSourcedObjectSByIdInSource
Andreas Müller

10/12/2019

11:51 PM Revision e0935f63 (cdmlib-apps): adapt some classes to new CommonService.getSourcedObjectSByIdInSourceC and cleanup
Andreas Müller
11:49 PM Revision 3bc8dd61 (cdmlib): add additional method for more specific return type of CommonService.getSourcedObjectSByIdInSource
Andreas Müller
11:04 PM Revision 2d09ccf7 (cdmlib): add more specific return type to CommonService.getSourcedObjectByIdInSource
Andreas Müller
11:02 PM Revision 925afb79 (cdmlib-apps): cleanup
Andreas Müller
05:26 PM Revision a3842bd8 (cdmlib): cleanup
Andreas Müller
12:07 PM Revision 891031f6 (cdmlib): ref #8509, ref #8508 some fixes to E+M PESI export and validation
Andreas Müller
12:06 PM Revision d9f92b40 (cdmlib-apps): ref #8509, ref #8508 some fixes to E+M PESI export and validation
Andreas Müller
12:05 PM Revision 1f9eb0e0 (cdmlib-apps): ref #8509 fix trailing whitespace for reference titleCaches
Andreas Müller
12:01 PM Revision 506f2414 (cdmlib-apps): ref #8577 cleanup E+M PESI validation
Andreas Müller
11:59 AM Revision 8e00239d (cdmlib-apps): ref #8587 adapt IF exporter
Andreas Müller
11:57 AM feature request #8587 (New): [PESI][IF] Implement IF specific CDM export
Open issue:
* For Sordariomycetidae and all children the kingdom can not be defined. See comment in #2717 for reason
Andreas Müller
11:22 AM Revision ffd6058e (cdmlib-apps): ref #2826 cleanup IF import
Andreas Müller

10/11/2019

03:46 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
This is probably mentioned in some "remaining preferences issues" ticket. At least it is known. Can you please check? Andreas Müller
12:15 PM bug #8586 (New): Feature checkbox lists in perferences can neither be modified nor be scrolled
It is not possible to change the state or to scroll the list of checkbox items in the settings for Features, Language... Andreas Kohlbecker
03:44 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
I am sure there is a duplicate ticket for this already. Can you please check. Andreas Müller
11:39 AM feature request #8585 (Closed): Factual Data View: new DesctiptionElements shoud be selected immediately
After creating a new factual data entry (DescriptionElement) in the Factual Data View the new entry should be activat... Andreas Kohlbecker
03:39 PM feature request #8128: Add indicator for feature facts and/or vocabularies which description type they support
WGB:
bin mir nicht sicher, ob Gebietsbezeichnungen (geogr., ökol.) features sind, aber sie können sich durchaus a...
Andreas Müller
02:19 PM Revision 8543d48b (cdmlib-apps): cleanup
Andreas Müller
02:19 PM Revision b639d1f2 (cdmlib-apps): ref #8577 updates to the E+M PESI export validation
Andreas Müller
02:19 PM Revision a2a0c1de (cdmlib-apps): ref #2717 some fixes E+M Pesi export
Andreas Müller
02:19 PM Revision f53e8dce (cdmlib-apps): reef #2717 add notNull handling to description export
Andreas Müller
01:48 PM Revision 869b76f8 (cdmlib): ref #2717 improve SimpleFilterMapper to use allowed and not allowed values
Andreas Müller
01:46 PM Revision 580e88c9 (cdmlib): ref #2717 fix notNull handling in ObjectMapper
Andreas Müller
01:45 PM Revision c0a697ab (cdmlib): ref #2717 improve ExportIgnore and NotYetImplemented and NullMapper
Andreas Müller
01:44 PM Revision da9caa6c (cdmlib): fix annotation mapper includedTypes handling
Andreas Müller
01:44 PM Revision 62262304 (cdmlib): cleanup
Andreas Müller
11:52 AM bug #8581 (Closed): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
I think we do not need a review, so I close this ticket. Katja Luther
11:39 AM bug #8581: Naming inconsitency: Taxon Navigator or Taxonomic Tree?
Applied in changeset commit:taxeditor|10dd6a16ad49bd78857ddd4bb86aa25d5a5cdf30. Katja Luther
11:26 AM bug #8581 (Resolved): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
This change of the name came with the migration to e4. The variable for the title string was name.view.0 (="Taxon Nav... Katja Luther
11:39 AM Revision 10dd6a16 (taxeditor): fix #8581: renaming taxon navigator
Katja Luther
10:11 AM bug #8584: Appended phrase should be shown on top level for misapplied names
Was there a ticket which decided to create a subsection? If yes, please relate it to this ticket. Andreas Müller
10:11 AM bug #8584 (Closed): Appended phrase should be shown on top level for misapplied names
Currently when editing misapplied name relationships in details view the details view has a subsection for taxon info... Andreas Müller
09:42 AM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
As far as I understand the problem, we need to implement the `furtherVotingDescisions(CdmAuthority CdmAuthority, Targ... Andreas Kohlbecker

10/10/2019

08:23 PM feature request #8583: Change Longitude Latitude to Latitude Longitude in Vaadin Geo location
![](picture231-1.png) Wolf-Henning Kusber
08:22 PM feature request #8583 (New): Change Longitude Latitude to Latitude Longitude in Vaadin Geo location
Type Specimen Editor:
Change Longitude/Latitude to Latitude/Longitude in Vaadin Geo location.
Reason: In publicat...
Wolf-Henning Kusber
05:49 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
1. The Classification label is not refreshed in the Taxon Navigator after changing it in the "Classification Wizzard... Andreas Kohlbecker
05:42 PM bug #5670: Refresh of Taxon Navigator
I think this ticket needs more details.
Refresh of what? General refresh of all nodes and the classifications?
Andreas Kohlbecker
05:19 PM bug #8545: Name editor: Erroneous status in Status type cannot be made withdrawn
Reason: a valid name (Botany) has no status information, wheras nom. val. is explicitly a zoological status with diff... Wolf-Henning Kusber
05:12 PM bug #8581: Naming inconsitency: Taxon Navigator or Taxonomic Tree?
Can you check when (and why, in which context) it was changed. I can't remember that we decided to rename it.
To m...
Andreas Müller
04:28 PM bug #8581 (Closed): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
The View is named like "Taxonomic Tree" but the menu entry is Window->Show View->"Taxon Navigator"
In the manual "...
Andreas Kohlbecker
03:06 PM EDIT Platform Etablierung task #8580 (In Progress): Update documentation to latest revision of the Taxeditor
Andreas Kohlbecker
03:06 PM EDIT Platform Etablierung task #8580 (Closed): Update documentation to latest revision of the Taxeditor

Documents to check:
* Manual-EDIT-Platform-01-INSTALL.docx **DONE**
* Manual-EDIT-Platform-02-DEMO.docx
* Manu...
Andreas Kohlbecker
02:58 PM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
Andreas Müller wrote:
> is this only an UI issue or is it also a cdmlib-security issue?
I think this is also a cd...
Katja Luther
12:01 PM Revision 972ff1cf (cdmlib): fix incorrect obligatory handling in DoiMapper and TimePeriodMapper
Andreas Müller
12:00 PM Revision faa0db48 (cdmlib): ref #2717 allow notNull for SingleAttribute mappers (needed for required fields in PESI)
Andreas Müller
11:58 AM Revision 15cfae05 (cdmlib): ref #2717 fix incorrect error handling in CollectionExportMapping, only throw exception for single record, not all records
Andreas Müller
11:56 AM Revision 66925277 (cdmlib): fix incorrect defaultValue handling in BooleanMapper factory method
Andreas Müller
11:55 AM Revision 23720f5f (cdmlib): cleanup
Andreas Müller
10:57 AM Revision e0a12099 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
Katja Luther
10:56 AM Revision 3f87d726 (cdmlib-apps): fix compile errors in app-import
Katja Luther
10:11 AM Revision af221f0d (cdmlib-apps): commented 2 lines to make edaphobase compile
Andreas Müller
09:47 AM Revision dd919d85 (cdmlib-apps): reef #2717 better handling of status undefined
Andreas Müller
09:47 AM Revision 9d857396 (cdmlib-apps): ref #2717 add Valencian, High Aragonese, Majorcan and Faroer to PESI Export
Andreas Müller
09:47 AM Revision 8d5e5e53 (cdmlib-apps): cleanup
Andreas Müller
09:47 AM Revision b9dcae47 (cdmlib-apps): cleanup
Andreas Müller
09:32 AM Revision bf7e9675 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
Katja Luther
09:31 AM Revision ff5db610 (cdmlib-apps): ref #1445: merging fauna europaea and erms
Katja Luther

10/09/2019

09:22 PM bug #8579: Search in PhycoBank Portal with error
Search for scientific name Planothidium: 34x error Wolf-Henning Kusber
07:18 PM bug #8579 (Worksforme): Search in PhycoBank Portal with error
Search for Publication "Wetzel". Search is working but errors are displayed.
![](picture035-1.png)
Wolf-Henning Kusber
09:05 PM Revision 855ea64a (cdmlib-apps): ref #1444, ref #8509 add defined vocabulary to ERMS areas
Andreas Müller
09:04 PM Revision 81bc4733 (cdmlib-apps): ref #2717 add EM common name area handling to PesiTransformer
Andreas Müller
09:01 PM Revision e2fb06b3 (cdmlib): cleanup
Andreas Müller
09:00 PM Revision 9801bfb4 (cdmlib): ref #2717 add EM common name area UUIDs to BerlinModelTransformer
Andreas Müller
05:04 PM EDIT Platform Etablierung task #8578 (Closed): Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)
In the Taxeditor documentation the term 'window' is being used as simple and common term to refer to the various top ... Andreas Kohlbecker
02:49 PM Revision 4b6dc990 (taxeditor): Remove unused class variable
Patrick Plitzner
02:49 PM Revision e9958b2a (taxeditor): ref #8450 Expand matrix rows only to taxon level
Patrick Plitzner
01:08 PM Revision 0c308148 (cdmlib): cleanup
Andreas Müller
11:25 AM Revision 5afad693 (cdmlib-apps): # 2717 fix NPE in finding areas (still needs to be tested by ERMS import)
Andreas Müller
11:24 AM Revision 99414418 (cdmlib-apps): # 2717 better logging for E+M distribution status "undefined"
Andreas Müller
11:23 AM Revision 9fe94bfe (cdmlib-apps): # 2717 improve handling of name types which do not exist as taxa (in the area)
Andreas Müller
11:22 AM Revision ab4a17f5 (cdmlib-apps): # 2717 fix finding kingdom for valueless EM taxa
Andreas Müller
11:19 AM Revision b643bc02 (cdmlib-apps): ref #8577 some changes to E+M export validation
Andreas Müller
11:16 AM Revision 6f79628c (cdmlib-apps): # 2717 cleanup and better logging for PesiExport
Andreas Müller
11:05 AM Revision fb82651c (cdmlib): #8577 fix handling of long values in getUniqueInteger
Andreas Müller
11:05 AM Revision 5d0804d6 (cdmlib): cleanup
Andreas Müller
11:03 AM task #8577 (In Progress): [PESI][E+M] Validation for E+M export
Implement validation for E+M export to PESI warehouse
Maybe duplicated by #2792
Andreas Müller
10:40 AM Revision 3f5bef06 (cdmlib): ref #1445: fix helper methods for pesi merging
Katja Luther

10/08/2019

11:30 PM Revision 01bc5fe1 (cdmlib-apps): ref #8508 some refactoring for ERMS validation
Andreas Müller
11:29 PM Revision 55da90fc (cdmlib-apps): ref #1444 trim displayname for ERMS import
Andreas Müller
11:28 PM Revision 2e058f2b (cdmlib-apps): # 2717 add PesiEuroMedValidator
Andreas Müller
11:28 PM Revision 67426b79 (cdmlib-apps): ref #2717 adapt PesiExport to EuroMed requirements and adapt PesiExportActivatorEM
Andreas Müller
11:23 PM Revision 803707ee (cdmlib-apps): GreeceImageActivator latest import file
Andreas Müller
11:22 PM Revision 2f628c0c (cdmlib-apps): cleanup
Andreas Müller
10:54 PM Revision e5c18a95 (cdmlib): fix default schema validation for ImportConfiguratorBase
Andreas Müller
10:54 PM Revision e0f9407f (cdmlib): cleanup
Andreas Müller
10:54 PM Revision 73eeeb34 (cdmlib): ref #1444 add diffIndex method to CdmUtils
Andreas Müller
10:21 PM Revision d346bae9 (cdmlib-apps): ref #2717 script for adding E+M source to all E+M taxa
Andreas Müller
12:23 PM Revision 87820880 (cdmlib): smaller changes in CdmLightExport (syn sec and fullAuthor in references)
Katja Luther
10:22 AM task #8576 (New): [PESI][DW] Dokumentation for PESI export
This ticket documents how to run a complete PESI export. Later the content will be moved to a Wiki page.
* Ask fo...
Andreas Müller

10/07/2019

09:24 PM Revision 58cd368c (cdmlib-apps): ref #8509 use kingdomId to define rank for PESI export
Andreas Müller
09:23 PM Revision 22e0d6ae (cdmlib-apps): ref #8509 use EnumSet instead of BitSet for source definition
Andreas Müller
09:21 PM Revision 39d481af (cdmlib-apps): cleanup
Andreas Müller
08:48 PM Revision 787b3ec2 (cdmlib-apps): ref #8509 cleanup rank handling in PesiTranformer
Andreas Müller
08:46 PM Revision 0b1be0da (cdmlib-apps): ref #1444, ref #8508 move diffIndex method to CdmUtils
Andreas Müller
05:57 PM EDIT Platform Etablierung task #8555 (In Progress): Evaluate document format and management for the documentation
Andreas Kohlbecker
01:55 AM Revision 65866505 (taxeditor): fix compile error
Andreas Müller
12:51 AM Revision b8fc4ee4 (cdmlib): ref #1444, ref #8509 adapt IncludedInMapper and TaxonRelationshipType uuid access to ERMS needs
Andreas Müller
12:49 AM Revision 57fc748f (cdmlib-apps): ref #8508 adapt ERMS pipeline validator to taxon relationships
Andreas Müller
12:49 AM Revision 54a3d685 (cdmlib-apps): cleanup
Andreas Müller
12:48 AM Revision 41cf69c5 (cdmlib-apps): ref #1444, ref #5809 fix taxon relationships in ERMS import and export
Andreas Müller
12:43 AM Revision aa44c220 (cdmlib-apps): ref #1444 improve logging and case sensitive handling for synonym relationship type
Andreas Müller
12:42 AM Revision 75f6d666 (cdmlib-apps): ref #8509 add included taxon relationship export to PESI
Andreas Müller
12:39 AM Revision d87e224c (cdmlib-apps): ref #5809 change partition size for source export
Andreas Müller

10/06/2019

03:03 PM Revision c1ff510c (taxeditor): cleanup
Andreas Müller
10:04 AM Revision 9afc9463 (cdmlib-apps): ref #8508 add TODO to validation
Andreas Müller
10:03 AM Revision 664255b8 (cdmlib-apps): ref #8508 add nomstatus, name rel and taxon rel validation
Andreas Müller
10:00 AM Revision 2b21e6b8 (cdmlib-apps): ref #8508 add Monera to ERMS validation again
Andreas Müller
09:58 AM Revision 7599c655 (cdmlib-apps): ref #1444 revert order of nomstatus to make it similar to SQL script
Andreas Müller
09:57 AM Revision 60d45927 (cdmlib-apps): cleanup
Andreas Müller
09:56 AM Revision 1bbfa4c0 (cdmlib-apps): ref #1444 fix included in and synonym relationship handling for ERMS import (1 rel per taxon)
Andreas Müller
09:53 AM Revision a39ba704 (cdmlib-apps): ref #1444 implement ERMS getSynonymRelationTypesByKey
Andreas Müller
09:52 AM Revision 6dbf7ff0 (cdmlib-apps): ref #1444 make ERMS getNomenclaturalStatusByKey case insensitiv
Andreas Müller
09:48 AM Revision 397a8033 (cdmlib-apps): ref #1444, ref #8508, ref #8509 move synonymTaxonRelationshiptype uuid to TaxonRelationship class
Andreas Müller
09:46 AM Revision b607fa1a (cdmlib-apps): ref #8509 handle doubtful NomenclaturalStatusType.COMB_NOV() to PESI export
Andreas Müller
09:44 AM Revision 7dcac868 (cdmlib-apps): ref #8509 add missing misapplied name and pro parte synonym relations to PESI export
Andreas Müller
09:42 AM Revision 0049964a (cdmlib-apps): cleanup
Andreas Müller
09:38 AM Revision 5ee6ca0b (cdmlib-apps): minor for Greece import
Andreas Müller
09:37 AM Revision 1a278727 (cdmlib): ref #1444 make getTaxonRelationshipType public in importers to make it usable in mappers
Andreas Müller
09:37 AM Revision 63c18ef5 (cdmlib): ref #1444 handle no language as unknown language for imported new nomenclatural status
Andreas Müller
09:37 AM Revision 8588c491 (cdmlib): ref #1444, ref #8509 move ERMS synonym taxon relationship uuids to TaxonRelationship class
Andreas Müller
09:37 AM Revision 0578d459 (cdmlib): ref #1444 adapt DbImportSynonymMapper to ERMS requirements
Andreas Müller
09:37 AM Revision 52c1c6a3 (cdmlib): ref #1444 add getSynonymRelationTypesByKey to IInputTransformer
Andreas Müller
09:37 AM Revision 95c828bc (cdmlib): ref #8509 fix NPE in getAnnotations(by type-uuid)
Andreas Müller
09:37 AM Revision f1319b4b (cdmlib): reduce log level for non latin nom status representations
Andreas Müller
09:36 AM Revision 74336004 (cdmlib): cleanup
Andreas Müller

10/04/2019

06:20 PM bug #8575 (New): Specimen details in PhycoBank Portal
Example: http://phycobank.org/102053
PhycoBank Portal output
There are two issues:
(1) The footnot should lead to ...
Wolf-Henning Kusber
06:10 PM task #8574 (New): Übernahme von Namen in PhycoBank
Wenn eine Gattung, um eine neue Art anzulegen oder ein Species Epitheton, um ein neues infraspezifisches Epitheton an... Wolf-Henning Kusber

10/02/2019

02:37 PM task #7976: [PESI][ERMS] Erms taxon import
NO synonyms exist with an accepted taxon again being a synonym of another accepted taxon:
~~~
SELECT acc.id ac...
Andreas Müller
09:12 AM task #7976: [PESI][ERMS] Erms taxon import
ACCEPTED TAXON:
336 taxa have NO accepted taxon (tu_acctaxon IS NULL)
57003 are their own accepted taxon (tu_ac...
Andreas Müller
08:34 AM task #7976: [PESI][ERMS] Erms taxon import
There are 82 tu_status=accepted taxa with unaccept reason: (mail sent)
~~~
SELECT *
FROM tu
WHERE tu_status = 1...
Andreas Müller
10:44 AM Revision d0a4f3d9 (taxeditor): ref #5873: performance issues
Katja Luther

10/01/2019

03:03 PM Revision d3796291 (cdmlib): ref #5873: check for general description editing right
Katja Luther
03:02 PM Revision d48b6aa4 (taxeditor): ref #5873: authentication as parameter for service method
Katja Luther
01:38 PM Revision a4ff8cb0 (cdmlib): revert some changes
Katja Luther
01:33 PM feature request #5873 (In Progress): Implement rights&roles for TaxEditor distribution editor
implemented:
* check in OpenDistributionEditorHandler whether the user has the permission to edit subtree.
* filt...
Katja Luther
01:28 PM Revision e913a037 (cdmlib): ref #5873: filter nodes without permission
Katja Luther
01:20 PM Revision 1503d9ad (taxeditor): ref #5873: check rights for selected subtree for distribution editor
Katja Luther
10:14 AM Revision 9498b2f0 (taxeditor): Use parentDto() service method
Patrick Plitzner

09/30/2019

02:09 PM Revision 077e5556 (taxeditor): ref #8572: minor
Katja Luther
02:04 PM feature request #7457 (Resolved): E+M: Allow filtering for only published in search
Applied in changeset commit:taxeditor|d12fef53934e5bc7a8869160e63f6c2f1a14b52c. Katja Luther
02:04 PM Revision d12fef53 (taxeditor): fix #7457: add filter option for unpublished taxa in taxon search
Katja Luther
01:54 PM bug #8573: Übernahme sec. als syn. sec.
Can you please further define what the concrete problem is. This behavior always existed and is default. Usually syno... Andreas Müller
01:47 PM bug #8533: missing collector and fieldnumber in abcd import
I uploaded the correct tissue sample file and will test again. Patrick Plitzner
01:24 PM bug #8533 (Resolved): missing collector and fieldnumber in abcd import
as the used example was about two different field units I close this ticket. Please make a last review for closing th... Katja Luther
01:22 PM feature request #8572 (Resolved): Rule considered configurable
please review Katja Luther
01:21 PM feature request #8486 (Resolved): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
now doubtful is "??", unplaced "?" Katja Luther
01:21 PM Revision 24802dc7 (taxeditor): ref #8486: add symbol to doubtful taxonnode in navigator
Katja Luther
11:52 AM Revision 39af4e55 (cdmlib-apps): ref #1444 remove ErmsGeneralImportValidator from import for now
Andreas Müller
11:49 AM Revision dd9fed99 (cdmlib-apps): ref #8508 latest version of import + export for ERMS activators
Andreas Müller
11:48 AM Revision 8a133607 (cdmlib-apps): ref #1444, ref #8508 add Monera filter handling in ERMS validation and for import
Andreas Müller
10:32 AM Revision 651cb4bc (cdmlib-apps): ref #1444 improve handling of infra-infra-species and include test for taxon title formatting
Andreas Müller
10:29 AM Revision 33337032 (cdmlib-apps): ref #1444, ref #8509, ref #8508 handle NomenclaturalStatusType in ERMS pipeline
Andreas Müller
10:20 AM Revision bb4404d2 (cdmlib-apps): cleanup
Andreas Müller
10:16 AM Revision 6e51084a (cdmlib): ref #1444 allow to create new NomenclaturalStatusTypes during import
Andreas Müller
10:15 AM Revision f0327d32 (cdmlib): cleanup
Andreas Müller
09:59 AM Revision c219c816 (taxeditor): fix NPE in NameDetailsView Preference processing
Katja Luther

09/29/2019

10:23 PM Revision 2cbe08de (cdmlib): cleanup
Andreas Müller
10:22 PM Revision 67ed9b99 (cdmlib): ref #1444 add resetTitleCache method
Andreas Müller
09:54 PM Revision d1dec4a7 (cdmlib): ref #1444 adapt DbImportMethodMapper for ERMS titleCache testing
Andreas Müller
09:52 PM Revision 2120777b (cdmlib): cleanup
Andreas Müller
08:33 PM Revision 118bc6b8 (cdmlib-apps): ref #8508 latest changes to PesiErmsValidator
Andreas Müller
08:33 PM Revision 93c92edc (cdmlib-apps): ref #8509 minor fix
Andreas Müller
08:32 PM Revision b91853a7 (cdmlib-apps): cleanup PesiTransformer
Andreas Müller
08:32 PM Revision 383b85b1 (cdmlib-apps): ref #8509 fix missing non-default language notes
Andreas Müller
08:30 PM Revision 9bb5ffae (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle truncated reference cache correctly
Andreas Müller
08:28 PM Revision a1340c69 (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle rank, kingdom and code correctly for Biota and Monera
Andreas Müller
08:25 PM Revision 79276af0 (cdmlib-apps): cleanup
Andreas Müller
08:18 PM Revision effd09f0 (cdmlib): ref #8509 handle non-default language textdata correctly in DbTextDataMapper
Andreas Müller
08:17 PM Revision 492451b1 (cdmlib): ref #8509 handle truncated titlecaches in DbObjectMapper correctly
Andreas Müller
08:16 PM Revision f19a4363 (cdmlib): cleanup
Andreas Müller
04:26 PM Revision 2e170952 (taxeditor): preliminary comment sectionMap handling in PreferencesUtil
Andreas Müller
12:33 AM Revision 2c11da48 (cdmlib-apps): ref #8508 latest changes for erms pipeline validation
Andreas Müller
12:33 AM Revision 7990caf9 (cdmlib-apps): ref #1444 trim notes import ERMS
Andreas Müller
12:32 AM Revision de3c38ba (cdmlib-apps): ref #8509 fix link (and ecology) export ERMS
Andreas Müller
12:30 AM Revision 80911706 (cdmlib): ref #8509 dependend IdIncMapper
Andreas Müller
12:29 AM Revision 11263195 (cdmlib): ref #1444 add trim to DbImportMultiLanguageTextMapper
Andreas Müller
12:29 AM Revision ae12a9be (cdmlib): cleanup
Andreas Müller

09/28/2019

09:12 PM Revision 81dfc7e2 (cdmlib-apps): ref #8509 add CommonNameSource to doDelete for ERMS export
Andreas Müller
09:11 PM Revision 17655285 (cdmlib-apps): ref #8509 fix ERMS image export to support multiple media
Andreas Müller
09:10 PM Revision 95df0734 (cdmlib-apps): ref #1444 fix sql for link import ERMS
Andreas Müller
09:09 PM Revision 644b2537 (cdmlib-apps): cleanup
Andreas Müller
07:08 PM Revision 440b7828 (cdmlib-apps): ref #8508 latest changes to ERMS validator and activators
Andreas Müller
07:07 PM Revision ddc988ed (cdmlib-apps): ref #1444 fix note for synonyms handling for ERMS import
Andreas Müller
07:06 PM Revision c32ee6d2 (cdmlib-apps): ref #8509 adapt description source handling for ERMS export
Andreas Müller
07:05 PM Revision 73558a3c (cdmlib-apps): ref #1444 fix note source handling in ERMS
Andreas Müller
07:05 PM Revision 6ae21a57 (cdmlib-apps): ref #1444, ref #8508, ref #8509 fix link handling and add ecology export to ERMS pipeline
Andreas Müller
07:02 PM Revision 7b61057c (cdmlib-apps): ref #1444 fix reference type handling for ERMS
Andreas Müller
07:00 PM Revision 2ae4e7ca (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle taxon.cacheCitation in ERMS
Andreas Müller
06:58 PM Revision 23801854 (cdmlib-apps): cleanup
Andreas Müller
06:46 PM Revision 7e6fc953 (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle SpeciesExpertName in ERMS
Andreas Müller
06:41 PM Revision 5dc4b31d (cdmlib): ref #8509 some helper methods for ERMS export
Andreas Müller
06:40 PM Revision f02afae4 (cdmlib): ref #8509 new factory method for MethodMapper
Andreas Müller
06:40 PM Revision 88f75039 (cdmlib): ref #1444, ref #8509 add some import and export mappers
Andreas Müller
06:39 PM Revision aa30ebde (cdmlib): ref #1444, ref #8509 fix some import and export mappers
Andreas Müller
06:38 PM Revision e6f237b7 (cdmlib): cleanup
Andreas Müller

09/27/2019

09:49 PM bug #8565 (Closed): external links and dois no longer showing up
NK:
ja, das Link Symbol wird angezeigt und die Weiterleitung funktioniert.
Andreas Müller
08:42 PM bug #8573 (New): Übernahme sec. als syn. sec.
Wenn ich im Taxonomic EDITor ein akzeptiertes Taxon in die Synonymie verschiebe, wird (neuerdings?) die sec. ref. des... Wolf-Henning Kusber
05:46 PM Revision 09e2bb85 (cdmlib-apps): adapt classes to changes in DbAnnotationMapper with excluded set
Andreas Müller
05:45 PM Revision 788f4a81 (cdmlib-apps): ref #8509 rename old PESI factual data exports
Andreas Müller
05:43 PM Revision 344f4ac6 (cdmlib-apps): adapt classes to changes in DbAnnotationMapper with excluded set
Andreas Müller
05:39 PM Revision 299bbd45 (cdmlib): ref #1444 refactor DbAnnotationMapper and add included type filtering
Andreas Müller
05:39 PM Revision a98f6dad (cdmlib): ref #1444 use sourceReferenceTitle instead of database name where available
Andreas Müller
05:39 PM Revision bd9b07e3 (cdmlib): cleanup
Andreas Müller
02:58 PM feature request #8572 (In Progress): Rule considered configurable
Katja Luther
10:34 AM feature request #8572 (Closed): Rule considered configurable
Rule considered is not needed in all projects, therefore it should be configurable whether it should be shown or not Katja Luther
01:29 PM Revision 6e2d027c (taxeditor): code cleaning
Katja Luther
01:29 PM Revision da5756d8 (taxeditor): ref #8572: code cleaning and rule considered configurable
Katja Luther
12:30 PM Revision bd0e8d04 (taxeditor): Fix for setting the cursor for key statements in detail view
Patrick Plitzner
12:21 PM Revision e52a98ef (taxeditor): Fix potential NPE
Patrick Plitzner
11:22 AM Revision a92dd19c (taxeditor): Fix class cast exception for poltomous key graph view
Patrick Plitzner
11:17 AM Revision a6871bd2 (cdmlib-apps): cleanup
Andreas Müller
10:34 AM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
this is implemented now. Configuration is moved to new ticket (#8572). Katja Luther
10:29 AM Revision cc1f8735 (taxeditor): ref #8410: disable code edition combo when rule considered is empty
Katja Luther
09:36 AM Revision 192396cd (cdmlib): ref #8450 minor refactoring
Patrick Plitzner
09:36 AM Revision 4e9c11d6 (cdmlib): ref #8450 Add sample size to quantitative data aggregate
Patrick Plitzner
 

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