Activity
From 08/14/2019 to 09/12/2019
09/12/2019
- 01:09 PM feature request #8544 (New): check for number of synonyms entered in name editor by copy paste and warn if it is a long list
- mail WB:
ich habe gerade aus Versehen die Fehlermeldung in den Name-Editor kopiert. Das gibt eine SEHR lange Sy... - 11:44 AM feature request #8350 (In Progress): Search dialog for named areas should work with abbreviations
09/11/2019
- 07:25 PM feature request #8134: Implement verbatim type information in dataportal
- Andreas Kohlbecker wrote:
> The textual type designation are now at least shown in the taxon synonymy and in the nam... - 04:53 PM feature request #8134: Implement verbatim type information in dataportal
- test data dumped and stored in _testdata/edit-int/testdb/5.10/cdm_integration_reference-2019-09-11-001.sql.bz2
- 04:41 PM feature request #8134: Implement verbatim type information in dataportal
- The textual type designation are now at least shown in the taxon synonymy and in the name page.
Open issues are:
... - 11:50 AM feature request #8134 (In Progress): Implement verbatim type information in dataportal
- 11:50 AM feature request #8134: Implement verbatim type information in dataportal
- [Feedback from Walter]
Hallo,
mit Bezug auf das Portal folgender Vorschlag meinerseits:
Wenn nach dem Ausgabet... - 10:19 AM feature request #8134 (New): Implement verbatim type information in dataportal
- 10:18 AM feature request #8134: Implement verbatim type information in dataportal
- Andreas Kohlbecker wrote:
> Hi Andreas,
>
> the verbatim type information is represented by the class `TextualTyp... - 08:34 AM feature request #8134 (Feedback): Implement verbatim type information in dataportal
- Hi Andreas,
the verbatim type information is represented by the class `TextualTypeDesignation`. This class has a b... - 07:18 PM bug #4964: footnotes for taxonRelationship sources and annotations should be rendered together
- The other milestone should not be used anymore
- 04:30 PM feature request #8538 (Closed): add text_l10n for TextualTypeDesignation.text to web service respones
- 12:53 PM feature request #8538 (Resolved): add text_l10n for TextualTypeDesignation.text to web service respones
- Applied in changeset commit:cdmlib|c4942e5e5d1cc2acc566cf357a22a90a140ca5e0.
- 08:49 AM feature request #8538 (Closed): add text_l10n for TextualTypeDesignation.text to web service respones
- The free text in `TextualTypeDesignation` needs to be localized for web service responses. See `DescriptionElementBea...
- 03:19 PM task #8543 (Closed): overcome distinction of annotation and other foonotes
- The distinction of annotation and other foonotes is causing problems as reported in #2602 and in #4964
Moreover it... - 01:05 PM feature request #8542 (New): TaxEditor only remembers the last db and credentials not last db for server
- mail AM:
derzeit scheint es so zu sein, dass sich der TaxEditor nur die allgemein zuletzt verwendete DB + credenti... - 01:04 PM bug #8541 (New): Unify Phylum and Division
- According to ICNAFP (https://www.iapt-taxon.org/nomen/pages/main/art_3.html) phylum and division are the same. Also i...
- 01:03 PM feature request #8540 (New): for localhost mgd the name of the db is not shown in title
- mail AM:
bei Verwendung von Localhost Mgd. Wird derzeit die DB nicht im Titel angezeigt. Das ist gerade etwas st... - 12:51 PM task #8513 (Closed): CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
- everything works as expected
- 12:50 PM task #8505 (Closed): ConfigFileUtil: turn all spring bean methods into not statical methods.
- fully solved and working as expected since there are no longer any problems in the dependent products
- 11:48 AM feature request #8539 (Closed): Add IndividualsAssociation when adding specimens to the character matrix
- 09:21 AM bug #8535: Connect Dialog: Connect failure warning unreadable
- Thank you for this screenshot. This clarifies the situation. There are a couple of eclipse bugs due to which eclipse ...
- 08:28 AM bug #8535: Connect Dialog: Connect failure warning unreadable
- This is how it looks on Windows:
Should look similar after changing for linux. But open ... - 06:57 AM bug #8535: Connect Dialog: Connect failure warning unreadable
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > This is only an issue on linux.
>
> Maybe only for KDE. @P... - 09:05 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- moving to release 5.10 as this is prerequisite for #7696
- 09:00 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- The `TextualTypeDesignation` also need to be handled by the `TypeDesignationSetManager` currently the controller meth...
09/10/2019
- 05:45 PM bug #8537 (New): Connect Dialog: Connect failure warning can be missleading
- When attempting to connect with invalid credentials the "Connect Dialog" reports this incident with an in-appropriate...
- 05:33 PM bug #8535: Connect Dialog: Connect failure warning unreadable
- Andreas Müller wrote:
> This is only an issue on linux.
Maybe only for KDE. @Patrick: Do you have similar experie... - 05:20 PM bug #8535: Connect Dialog: Connect failure warning unreadable
- This is only an issue on linux.
- 05:15 PM bug #8535 (New): Connect Dialog: Connect failure warning unreadable
- The relative luminance of font color and background are too close. Enhance the contrast for better readability.
![... - 05:20 PM bug #8536 (Duplicate): Connect Dialog: UI elements exceed the available space
- Depending on the system font dpi settings and "Widget style" parts of the Connect Dialog can become unreadable (see s...
- 05:06 PM task #8534 (New): Usability/UX ticket overview
- This ticket gives an overview on Usability/UX issues in the Taxeditor.
*Although user experience design (UX Desi... - 11:28 AM bug #8533 (Closed): missing collector and fieldnumber in abcd import
- when importing specimen/dna as associated units where the gathering event information is not complete in one of the d...
- 11:23 AM feature request #8014: Label wording im UI Name Editor
- yes, perfectly implemented, thanks
- 11:17 AM feature request #8014 (Closed): Label wording im UI Name Editor
- 11:16 AM feature request #8014: Label wording im UI Name Editor
- I implemented it exactly as suggested in the screenshot which is attached to the decription of this ticket:
Sugg... - 10:57 AM feature request #8014: Label wording im UI Name Editor
- "Replaced synonym" as decided, fine.
"Validation of": the idea was "Validation of designation" this would be the cor... - 11:03 AM bug #8462 (Closed): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- agreed.
- 09:25 AM bug #8462 (Resolved): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- New species name with new genus with new replaced synonym with new orthographic variant successfully tested. I think ...
- 08:39 AM bug #8462 (Feedback): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- the orthographic variant could also be tested, but I think your tests have sufficient coverage if you have started a ...
- 10:14 AM bug #8532 (Resolved): common name language selection is not selected
- Applied in changeset commit:taxeditor|c2a852f6e6b376780709a8da2ac614b1baf64bef.
- 10:13 AM bug #8532 (Closed): common name language selection is not selected
- Hallo Katja,
in nightly und jetzt auch auf Prduction getestet (mit Cichorieen – Cichorium endivia – Common Name „B...
09/09/2019
- 06:50 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- Tested: new genus with new reference: no problems
Tested: new basionym or replaced synonym with new reference: no pr... - 03:34 PM bug #8374 (Duplicate): Save genus generated for a species with a different reference
- duplicates #8462
- 03:10 PM feature request #8014: Label wording im UI Name Editor
- done, please review.
- 03:09 PM feature request #8014 (Resolved): Label wording im UI Name Editor
- Applied in changeset commit:cdm-vaadin|218b286e1ebf5a962c239f2bd726df714652257e.
- 01:21 PM bug #8531 (In Progress): factual data and media view always opened when opening taxon
- 01:20 PM bug #8531 (Resolved): factual data and media view always opened when opening taxon
- 01:02 PM bug #8531 (Closed): factual data and media view always opened when opening taxon
- the factual data and media view should stay closed when opening a new taxon.
when opening the distribution editor th... - 11:54 AM feature request #8528: new author should be entered atomized
- If possible we should make this configurable. I guess there is a reason why we currently have it as it is.
- 09:28 AM feature request #8528 (New): new author should be entered atomized
- mail of ERS:
wenn man einen neuen Autoren einer bibliographischen Referenz eingeben will, ist der Cache default-m... - 11:05 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
- Alles war vorher abgespeichert. Nur existierenden Type-Text aufgemacht, Text hinzugefügt, gespeichert.
~~~
login ... - 11:04 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
- Hallo,
der Fehler scheint bei einfachen nom. details nicht aufzutauchen, also wenn nur eine Seitenangabe vorliegt.
... - 11:04 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
- Hallo,
und jetzt einfach nach Anfügen der nom. Referenz des Synonyms und speichern – der Name war offenbar noch nich... - 11:04 AM bug #8530 (New): Multiple Representation Exceptions when editing Textual Type Designations
- there is again a multiple representation exception when editing nomenclatural reference and textual type designation....
- 10:02 AM feature request #8529 (New): [DISCUSS]Display of aggregated descriptions
- NK:
~~Für die Ausgabe der Daten im Portal sind sicher noch darstellungstechnische Anpassungen nötig, ich stelle mi...
09/06/2019
- 10:59 PM bug #8527: TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is saved a second time
- fixed! Please review once the server is updated.
- 10:58 PM bug #8527 (Resolved): TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is saved a second time
- Applied in changeset commit:cdm-vaadin|81472d534399543096e4e64d32b0026f5a8a6023.
- 09:58 PM bug #8527 (Closed): TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is saved a second time
- # THIS BUG IS CRITICAL SINCE IT CAN CAUSE UN-NOTICED DATA LOSS!!!!!!!!
This bug affects the widgets for 'Validati... - 10:04 PM feature request #8408: add nomenclatural code select to NomenclaturalStatusRow
- please review once the server is up to date
- 07:38 PM feature request #8408 (Resolved): add nomenclatural code select to NomenclaturalStatusRow
- Applied in changeset commit:cdm-vaadin|ee2bbfeb4aaffddede5d2788b9e3db733282e591.
- 10:04 PM feature request #8409: add nomenclatural code select to NameRelationField
- please review once the server is up to date
- 10:02 PM feature request #8409 (Resolved): add nomenclatural code select to NameRelationField
- Applied in changeset commit:cdm-vaadin|7ee1c79ac0fd622d7a7e7d8acf3963aaae2cf109.
- 09:34 PM feature request #8398: Add nomenclatural code edition to ruleConsidered
- excellently implemented, thanks a lot!
I extended the protected constructors in `NameRelationship` and the related... - 07:35 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- ... once the server is updated ;-)
- 06:38 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- please review
- 06:35 PM bug #8462 (Resolved): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- Applied in changeset commit:cdm-vaadin|c80e35c14a41f15fc00f6bfa0cd5c46eadf5b37a.
- 02:19 PM bug #8516: Specimen editor (list) can not find FieldUnits with data only in protected titleCache
- correct the `*` at the beginning of the search term helps.
I suggest renaming this issue to "improve and harmonize... - 02:13 PM bug #8526 (Resolved): Swap synonym with accepted taxon does not work
- Applied in changeset commit:taxeditor|cd9c544a43ceb69db7609d422f5c68abc1ccc115.
- 02:08 PM bug #8526 (Closed): Swap synonym with accepted taxon does not work
- the swap synonym with accepted taxon handler/operation calls the service but saves the old taxon afterwards and the n...
- 11:48 AM bug #8525 (Duplicate): search for infraspecific name not working as expected
- Example: https://cybertaxonomy.eu/eu-bon/utis/1.3/search?query=Corvus%20corone%20subsp.%20corone&providers=bgbm-cdm-s...
- 11:46 AM bug #8523: add taxonuuid to name webservice for cdm providers
- Gabriele Dröge wrote:
>
> Higher Taxa klappt irgendwie nicht. Habe folgende uuid probiert: http://caryophyllales... - 11:43 AM bug #8523 (Closed): add taxonuuid to name webservice for cdm providers
- 11:19 AM bug #8523: add taxonuuid to name webservice for cdm providers
- https://cybertaxonomy.eu/eu-bon/utis/1.3/search?query=Hylocereus%20setaceus&providers=bgbm-cdm-server%5Bcaryophyllale...
- 11:15 AM bug #8523: add taxonuuid to name webservice for cdm providers
- hallo Gabi, hast du noch den Beispiel URL?
- 10:54 AM bug #8523 (Closed): add taxonuuid to name webservice for cdm providers
- search results in UTIS without taxonuuid. This uuid is needed to get higher taxa.
Tried with bgbm-cdm-server[caryo... - 11:45 AM bug #8524: Classification service not working with AbstractCdmServerClient
- das kann ich mir eventuell nächste Woche ansehen.
- 11:45 AM bug #8524 (New): Classification service not working with AbstractCdmServerClient
- Higher Taxa klappt irgendwie nicht. Habe folgende uuid probiert: http://caryophyllales.org/cactaceae/cdm_dataportal/t...
- 11:01 AM bug #8520 (Rejected): Adding new user Group fails
- Ticket rejected.
- 10:57 AM bug #8521: User details view: Change password button accessible for ROLE_USER_MANAGER
- according to what I wrote in https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/CdmAuthorisationAndAccessControl th...
09/05/2019
- 10:20 PM bug #8521: User details view: Change password button accessible for ROLE_USER_MANAGER
- I think not only the change password button but generally all User related issues need to be accessible. Can you plea...
- 05:08 PM bug #8521 (Duplicate): User details view: Change password button accessible for ROLE_USER_MANAGER
- The "Change password button" must also be accessible for the Role `ROLE_USER_MANAGER` not only for `Admin`
- 10:16 PM bug #8520 (Feedback): Adding new user Group fails
- Isn't it self-explaining: "must match "[A-Za-z0-9_\.\-]+"?
As discussed we have a rule since 5.9 that usernames an... - 03:47 PM bug #8520 (Rejected): Adding new user Group fails
- I attempted to created the Group "User Manager", this failed with the following exception:
~~~
login : admin
... - 10:02 PM bug #8516: Specimen editor (list) can not find FieldUnits with data only in protected titleCache
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Have you tried with Asterisk search. The specimen bulk editor... - 06:15 PM bug #8522 (Closed): Make type status mandatory in Name type designation editor
- Make "type status" mandatory in "Name type designation editor"
Record can be saved without entering a name status. - 05:48 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- The solution to this problems is tightly related to #7843.
Since I am assuming that we will decide for strategy 3.... - 05:23 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- this seems to happen, when the first name editor has been opened for a new name to be registered and has not jet been...
- 05:45 PM task #7843: blocking registrations can get lost when first TaxonNamePopupEditor with new name is not saved
- I consider strategy 3 from above the most user friendly and robust solution
- 04:03 PM bug #8519 (Closed): ROLE_USER_MANAGER missing in FirstDataInserter
- done
- 04:01 PM bug #8519 (Resolved): ROLE_USER_MANAGER missing in FirstDataInserter
- Applied in changeset commit:cdmlib|06e3b3f860d1e1813e97118ead71807ca7ee6414.
- 03:42 PM bug #8519 (Closed): ROLE_USER_MANAGER missing in FirstDataInserter
- The role `ROLE_USER_MANAGER` is missing in data bases and can not be created via the Taxeditor, see
- 03:34 PM bug #7991: GrantedAuthority selection dialog extremly slow
- this is a massive problem for me. This dialog is completely unusable.
- 03:26 PM bug #8377: TypeDesignationsEditors: Delete must not be allowe before the workingset is saved
- please review
- 03:25 PM bug #8377 (Resolved): TypeDesignationsEditors: Delete must not be allowe before the workingset is saved
- Applied in changeset commit:cdm-vaadin|66af3161e72892bc06cb3ca9d9eb6e292f87c2fa.
- 12:01 PM task #8518 (New): [PESI][DW] PESI export rules documented
- Source:
Taxon:
* Displayname: seems not to be used in PESI portal; creation unclear, in ERMS SQL export only t...
09/04/2019
- 07:00 PM bug #8377 (In Progress): TypeDesignationsEditors: Delete must not be allowe before the workingset is saved
- 06:58 PM bug #8376: RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting of a popup editor has been triggered
- please review
- 06:57 PM bug #8376 (Resolved): RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting of a popup editor has been triggered
- Applied in changeset commit:cdm-vaadin|4e9b68d2176a076bf7bd07ee6680f752f2223e2d.
- 04:27 PM bug #8516: Specimen editor (list) can not find FieldUnits with data only in protected titleCache
- Andreas Müller wrote:
> Have you tried with Asterisk search. The specimen bulk editor like all bulk editor do only a... - 03:21 PM bug #8516 (Feedback): Specimen editor (list) can not find FieldUnits with data only in protected titleCache
- Have you tried with Asterisk search. The specimen bulk editor like all bulk editor do only an exact search. The speci...
- 04:01 PM feature request #8342: shift field Field number
- please review
- 04:01 PM feature request #8342 (Resolved): shift field Field number
- Applied in changeset commit:cdm-vaadin|764269a10375767ce378c5e51a81639543a53eae.
- 11:57 AM bug #8517 (Resolved): SpecimenOrObservation: data from protected titleCache missig in portal pages
- please review
- 11:55 AM bug #8517: SpecimenOrObservation: data from protected titleCache missig in portal pages
- this is actually a problem in the `DerivedUnitFacadeCacheStrategy` which misses to respect protected `FieldUnit` titl...
09/03/2019
- 06:51 PM bug #8517 (Closed): SpecimenOrObservation: data from protected titleCache missig in portal pages
- The following portal pages are missing to show data from protected SpecimenOrObservation.titleCaches:
* Registrati... - 06:49 PM bug #8516 (Feedback): Specimen editor (list) can not find FieldUnits with data only in protected titleCache
- while the *Specimen editor (list)* misses finding the below shown FielUnits the *Specimen editor (tree)* finds them ...
- 06:06 PM bug #6523: Correct display of misspellings in synonymy
- Andreas Kohlbecker wrote:
> Guten Morgen,
>
> ich bin hinsichtlich einer endgültigen Lösung leidenschaftslos und... - 05:04 PM task #8512: Consider making Registration a subclass of IdentifiableEntity
- As far as I understood will PhycoBank repeat the same registration that has been done in another registration.
Thi... - 04:54 PM task #8512: Consider making Registration a subclass of IdentifiableEntity
- We first need more information about the semantic of the additional registration. Should it be a pure clone like in G...
- 12:59 PM task #8512 (New): Consider making Registration a subclass of IdentifiableEntity
- For Phycobank it is needed to refer to external registration identifiers.
E.g.: A registration made in mycobank, z... - 04:21 PM task #8514 (Closed): remove all PhycoBank redmine instances
- copied from #7265
- 04:12 PM bug #8189: Allow configuration of 'user.home' via the spring environment
- Andreas Müller wrote:
> Andreas Müller wrote:
> > The test ConfigFileUtilTest.testGetFolderSeperator does not work ... - 04:11 PM task #8513: CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
- if there are no problems in the products a review by another person will not be needed and the ticket can be closed.
- 04:09 PM task #8513 (Resolved): CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
- Applied in changeset commit:cdmlib|c3fca4bd9b4120f48b605f36f5efc59dd8e4bba8.
- 04:08 PM task #8513 (Closed): CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
- follow up to #8189
The getResourceFolderSeperator() method is not needed at all. The separator character is only u... - 03:12 PM task #8505 (Resolved): ConfigFileUtil: turn all spring bean methods into not statical methods.
- Applied in changeset commit:cdmlib|68ea5e65a8f844fef8efbf698f53f4fbfa6367b3.
- 03:11 PM task #8505 (In Progress): ConfigFileUtil: turn all spring bean methods into not statical methods.
- 10:00 AM bug #8511 (Closed): The structure path in the character details view should have a line break
- As seen in the screen shot, a large structure path expands the width of the details view so that the user has to scro...
- 09:51 AM bug #8510 (New): Non unique object exception when creating FeatureStates
- I could reproduce this by creating about 4-5 FeatureStates for a character tree, then save, and then create another 3...
09/02/2019
- 08:59 AM bug #8488 (In Progress): Characters can not be added to feature trees
- It is now possible to add characters to a feature tree via the context menu.
09/01/2019
- 06:15 PM task #8509 (In Progress): [PESI][ERMS] Export ERMS data to PESI
- 05:52 PM bug #8508 (In Progress): [PESI][ERMS] ERMS import pipeline validation
- Add validation for the correctnes of the ERMS->CDM->PESI pipeline
08/30/2019
- 09:40 PM bug #8189: Allow configuration of 'user.home' via the spring environment
- Andreas Müller wrote:
> The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows systems ... - 04:50 PM bug #8189 (Closed): Allow configuration of 'user.home' via the spring environment
- all remaining tasks copied to #8505
and closing this ticket - 08:59 PM feature request #8507 (New): Handle common names with same name and language but different area better in data portal
- As an example see: https://www.europlusmed.org/cdm_dataportal/taxon/eaa22491-9bf2-44f6-ba13-3eb3af6134a9
We could... - 08:04 PM task #8391: Name page shows complete name information (II)
- If you create subtasks you should put all tasks to subtasks. Otherwise ticket handling doesn't work well.
Preferred ... - 05:17 PM task #8506 (New): Remove the UpdatableRoutingDataSource, related classes and configuration
- The UpdatableRoutingDataSource has not been used for years and will never be reactivated since this concept would cau...
- 04:45 PM task #8505 (Closed): ConfigFileUtil: turn all spring bean methods into not statical methods.
- follow up to #8189
in ConfigFileUtil
**1.** turn all spring bean methods into not statically methods.
**2.*... - 04:30 PM task #8504 (Closed): Name page: allow hiding the Taxon section via settings
- works as expected
- 03:22 PM task #8504 (Resolved): Name page: allow hiding the Taxon section via settings
- Applied in changeset commit:cdm-dataportal|c05ac190012f0f56d4d2b8d47d6e227eabe353ed.
- 03:05 PM task #8504 (Closed): Name page: allow hiding the Taxon section via settings
- 02:37 PM feature request #8344 (Feedback): Cdm light export: add dummy line in simple facts table
- I have no time to review this. But I remember a discussion with WGB where he complaint that the line endings are linu...
- 01:08 PM feature request #8178 (Rejected): Auto-create absence/presence character for every structure
- Rejecting ticket -> It does not always make sense to auto-create the "presence" character e.g. "Tepal Tip" is a struc...
- 08:56 AM feature request #8299: add typification column to scientific name and homotypical group in cdm light
- move to 5.10 for feedback of WB
08/29/2019
- 10:17 PM bug #8385: Open issues in DB preferences
- can you move open issues to #8489?
- 04:25 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> In local preferences Publish Flag for "Use Default" the Camel Case is used, not the current ... - 03:30 PM bug #8385: Open issues in DB preferences
- In local preferences Publish Flag for "Use Default" the Camel Case is used, not the current correct label. E.g. (NotP...
- 02:37 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Distribution editor: Restore default removes the entry "distribution.status.term" from the a... - 02:37 PM bug #8385: Open issues in DB preferences
- Katja Luther wrote:
> Andreas Müller wrote:
> > Distribution editor status and area selection: restore default dele... - 02:32 PM bug #8385: Open issues in DB preferences
- Distribution editor: Restore default removes the entry "distribution.status.term" from the above table (and completel...
- 02:30 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Distribution editor status and area selection: restore default deletes the values correctly ... - 02:28 PM bug #8385: Open issues in DB preferences
- Distribution editor status and area selection: restore default deletes the values correctly but when opening the sele...
- 02:21 PM bug #8385: Open issues in DB preferences
- Names.NomenclaturalStatus restores default only after clicking 2x "Restore Default". Or more exact, clicking the firs...
- 01:58 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Generally values recovered by "Restore default" often seem not to... - 01:22 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Generally values recovered by "Restore default" often seem not to be persisted but old value... - 01:16 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Saving of "Publish Flag" does not always work. You may try differ... - 01:15 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Andreas Müller wrote:
> > General: When choosing "No - allow override" for all 3 entries th... - 01:12 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Saving of "Publish Flag" does not always work. You may try different states including allow ... - 12:53 PM bug #8385: Open issues in DB preferences
- Katja Luther wrote:
> Andreas Müller wrote:
> > Is there a reason why allow override is always disabled for "Enable... - 12:48 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> General: When choosing "No - allow override" for all 3 entries the values shown in local pre... - 12:45 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Is there a reason why allow override is always disabled for "Enable Distribution Editor"?
... - 12:34 PM bug #8385 (Feedback): Open issues in DB preferences
- Is there a reason why allow override is always disabled for "Enable Distribution Editor"?
- 11:58 AM bug #8385 (Resolved): Open issues in DB preferences
- abcd preferences are moved to a new ticket, please review the rest.
- 03:40 PM feature request #8503: Create abstract base UI from RegistrationUI and use it for all UIs
- > Especially it needs to be available for the distribution editor
agreed! This means it need to be done for the Di... - 03:10 PM feature request #8503: Create abstract base UI from RegistrationUI and use it for all UIs
- Especially it needs to be available for the distribution editor
- 03:08 PM feature request #8503 (Closed): Create abstract base UI from RegistrationUI and use it for all UIs
- The code which configures the error hanlder should also go into the abstract base class:
~~~java
Delegati... - 03:32 PM feature request #8304: Name page redirects to according taxon depending on query parameter
- the result of our call was the following:
The global switch which overrides the redirect behavior is not causing p... - 02:49 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- the same issue was reported once again:
Test New name entered (not saved) new Basionym, new reference or selected ... - 02:36 PM bug #8502: taxa with doubtful flag lack proper formatting
- Eckhard please can you test in http://test.e-taxonomy.eu/dataportal/preview/euromed/ if this issue is solved now?
- 02:35 PM bug #8502 (Resolved): taxa with doubtful flag lack proper formatting
- Applied in changeset commit:cdm-dataportal|61fc6c9311b1053b08ebb32085842f231edb3746.
- 02:15 PM bug #8502 (Closed): taxa with doubtful flag lack proper formatting
- taxa with doubtful flag lack proper formatting. The dataportal uses the titleCache instead of the taggedTitle.
- 12:10 PM task #8501 (New): setup OWASP vulnerability checker for projects
The (jenkins plugin](https://wiki.jenkins.io/display/JENKINS/OWASP+Dependency-Check+Plugin) seems not to be worki...- 11:38 AM bug #8500: DistributionStatusUI: Error while detaching UI from session
- back to unassigned ....
- 10:54 AM bug #8500 (New): DistributionStatusUI: Error while detaching UI from session
~~~
[flora-cuba] 2019-08-29 10:12:43,276 WARN [org.eclipse.jetty.server.session.HashSessionManager@5330da99Timer...- 09:20 AM task #8499 (New): Decide how to handle additional parameters like refAuthorString and originalNomenclaturalTitle for Berlin Model/E+M
- They have been additionally imported to CDM from BM, as the information may be needed in future.
For Person it has... - 05:14 AM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
- We could still add symbols with the current state of the flag to the "Set Flags" submenu. I created a new ticket for ...
- 05:12 AM bug #8498 (In Progress): Set Flags should show the current status of the flags
- Currently when setting the flag one does not know if the flag is set before or not. Especially for doubtful this is t...
08/28/2019
- 05:00 PM bug #8497 (Closed): NullPointerException (NPE) in AbstractCdmServerClient.generateTaxon()
- 03:47 PM bug #8497 (Resolved): NullPointerException (NPE) in AbstractCdmServerClient.generateTaxon()
- Applied in changeset commit:utis-core|8aacc65061a59b7e3efac378d7348d075e2dc0f9.
- 03:39 PM bug #8497 (Closed): NullPointerException (NPE) in AbstractCdmServerClient.generateTaxon()
- this bug breaks all Phycobank requsts:
~~~
Exception in thread "Thread-8191" java.lang.NullPointerException
... - 04:51 PM feature request #8180 (Closed): Add property term "Presence/Absence" to CDM default terms
- Terms and vocabulary are available in the taxeditor and replace possible existing presence/absence terms.
- 04:50 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
- 01:27 PM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
- For future a real freetext search might be preferable for the states in case there are >>10 states, but for now it is...
- 10:00 AM feature request #8475 (Resolved): Adapt applicable state detail view elements to FeatureState
- Removed empty element after first selection.
All issues should be fixed now. - 03:45 PM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
- now the allow override selection is now handled seperatly and the preference is only removed when default + allow ove...
- 10:28 AM bug #8389: Correct handling of default values with allowOverride=false
- But this is what this ticket is all about.
I can't remember that we decided to delete if "default" was selected AND ... - 10:12 AM bug #8389: Correct handling of default values with allowOverride=false
- Andreas Müller wrote:
> Katja Luther wrote:
> > The actual implementation is that if the default value is chosen al... - 10:03 AM bug #8389 (Feedback): Correct handling of default values with allowOverride=false
- Katja Luther wrote:
> The actual implementation is that if the default value is chosen allowOverride is set to true ... - 09:58 AM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
- 09:37 AM bug #8389: Correct handling of default values with allowOverride=false
- The actual implementation is that if the default value is chosen allowOverride is set to true and the checkbox is dis...
- 03:41 PM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
- the labels are moved
- 03:09 PM bug #8496 (New): Improve public setters for entity collections
- I had a problem when writing the CDM2CDM import. Here I wanted to call the setter and replace the old collection (whi...
- 02:35 PM bug #8496 (Feedback): Improve public setters for entity collections
- Does this implementation cause any real problems or is it only semantically problem?
As far as I remember the culp... - 02:20 PM bug #8496 (New): Improve public setters for entity collections
- These were implemented in #7600.
Unfortunately the current semantics is that e.g. AnnotatableEntity.setAnnotations... - 02:23 PM feature request #8495 (Closed): classification tree horizontally scrolls to active entrty
- done!
- 02:16 PM feature request #8495 (Closed): classification tree horizontally scrolls to active entrty
- Wenn man sich durch die Classification klickt, verschwindet ab einer gewissen Ebene das, was man eigentlich sehen wil...
- 02:21 PM feature request #7600: public setters for entity collections
- There is an open issue with the current implementation. I created a new ticket: #8496
- 02:13 PM task #8479 (In Progress): [PESI][FE] Cdm-2-Cdm import for FauEu
- 02:05 PM bug #8494 (In Progress): Better ABCD Preferences Page
- to be done
see also #8489
also #8385#note-51,
#8385#note-52
~~Why does the nomenclatural code not provid... - 02:04 PM bug #8493: hide taxon page general tab TOC block if empty
- adding work in progress as patch file: attachment:issue-8493.patch
- 02:00 PM bug #8493 (In Progress): hide taxon page general tab TOC block if empty
- I tried solving this issue and found that the table of contents is not empty. For Euro+Med the synonymy has been hidd...
- 01:16 PM bug #8493 (In Progress): hide taxon page general tab TOC block if empty
- reported by Anton:
Hallo,
da ist so ein verrutschtes “Content” (s.u.).
https://www.europlusmed.org/?q=cdm_d... - 11:58 AM bug #8492: Adapt CsvNameExport to rollback only and generally review where and how it should be used
- These 2 tests failed:
~~~
Tests in error:
IOServiceExportTest.exportCSVNameTest:99 ? UnexpectedRollback Trans... - 11:57 AM bug #8492 (New): Adapt CsvNameExport to rollback only and generally review where and how it should be used
- To make the 2 CsvNameExport tests in TaxEditor test environment not fail, read only was set to false in CsvNameExport...
- 11:16 AM feature request #8491 (New): show higher taxon graph in name and taxon pages optionally
- Step 1: discuss the concept of showing the higher graph paths
- 09:40 AM feature request #8490 (New): Sitemap implemented
- This feature has been requested since the early days of the dataportal.
A "sitemap" for the following data types i...
08/26/2019
- 02:56 PM feature request #8299: add typification column to scientific name and homotypical group in cdm light
- I added two columns to homotypical group table: TypeString (for SpecimenTypeDesignations) and TypeCache (for TextualT...
- 01:46 PM bug #8389: Correct handling of default values with allowOverride=false
- Has this been fixed in 5.9 together with #8385. To me it looks like fixed but I did not test systematically.
Pleas... - 01:41 PM bug #8385: Open issues in DB preferences
- ~~Generally values recovered by "Restore default" often seem not to be persisted but old values are kept.~~
fixed - 01:36 PM bug #8385: Open issues in DB preferences
- ~~Saving of "Publish Flag" does not always work. You may try different states including allow override adn "Restore D...
- 01:35 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Andreas Müller wrote:
> > General: When choosing "No - allow override" for all 3 entries th... - 01:22 PM bug #8385: Open issues in DB preferences
- ~~Search dialog: "Search also for titlecache ..." -> "... title cache ..."~~
fixed - 01:20 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> General: When choosing "No - allow override" for all 3 entries the values shown in local pre... - 01:15 PM bug #8385: Open issues in DB preferences
- ~~Publish Flage:~~
~~"Not Publish" -> "Don't Publish"~~
~~"Use Default (InheritFromParent)" -> kein Camel Case so... - 01:10 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Name details view: "Restore Defaults" does not enable "Secundum enabled" and "Secundum Refer... - 01:08 PM bug #8385: Open issues in DB preferences
- ~~NDV: "Whole Authorship section" -> "Whole authorship section"~~
- 01:08 PM bug #8385: Open issues in DB preferences
- ~~NDV: NameCache of the name ... -> "Name cache of the name ..."~~
- 01:07 PM bug #8385: Open issues in DB preferences
- ~~NDV: "Secundum Reference Details" -> "Secundum reference details"~~
- 01:06 PM bug #8385: Open issues in DB preferences
- ~~Name details view: "Restore Defaults" does not enable "Secundum enabled" and "Secundum Reference Details"~~
fixed - 01:02 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Same for ranks. They are not stored.
Hmm, maybe I made a mistake. This seems to work. - 12:59 PM bug #8385: Open issues in DB preferences
- ~~Same for ranks. They are not stored.~~
fixed - 12:58 PM bug #8385: Open issues in DB preferences
- ~~Nomenclatural status is not stored. Neither after reopening the pref dialog nor after restarting the TaxEditor the ...
- 12:13 PM bug #8385: Open issues in DB preferences
- ~~General: When choosing "No - allow override" for all 3 entries the values shown in local preferences are "Use Defau...
- 10:48 AM bug #8385: Open issues in DB preferences
- >similar for BiocaseProvider: io.ABCD.providerList is stored with "Keine Provider verfügbar;" which seems to be incor...
- 10:45 AM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> > Biocase Provider for associated DNA should be moved to "Biocase Provider"
> >>this is no... - 10:38 AM bug #8385: Open issues in DB preferences
- >io.ABCD.config is stored in DB with value NULL even if nothing has changed, if this is default value, the default sh...
- 10:23 AM bug #8385: Open issues in DB preferences
- ~~ABCD: Restore defaults does not seem to set allowOverride~~
- 10:21 AM bug #8385: Open issues in DB preferences
- Why does the nomenclatural code not provide a default? Is this wanted? Does ABCD not need a nomenclatural code? I rem...
- 10:14 AM bug #8385: Open issues in DB preferences
- > Biocase Provider for associated DNA should be moved to "Biocase Provider"
>>this is not the same because this pro... - 10:00 AM bug #8385: Open issues in DB preferences
- ~~ABCD: Ignore Authorship ... -> Ignore authorship ...~~
fixed - 09:52 AM bug #8385: Open issues in DB preferences
- ~~"Show rank in Distribution Editor" should be relabled -> "Show rank column"~~
this is fixed - 09:05 AM bug #8385: Open issues in DB preferences
- ~~Name Details View: when selecting "restore defaults" allow override is not set to default~~
this is fixed - 09:04 AM bug #8385 (Feedback): Open issues in DB preferences
- ~~Name Details View: if UseDefaults(Disable) is selected the fields are not disabled in the same way as when selectin...
- 01:37 PM feature request #8489 (Resolved): Further issues for DB preferences
- * ~~Common names vocabulary select list:~~
* ~~has no "allow override" (as not yet present in local preferenc... - 01:21 PM feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
- Created new ticket for adding characters to feature trees - #8488
- 01:20 PM bug #8488 (Closed): Characters can not be added to feature trees
- 08:46 AM feature request #8486 (New): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Reviewed the setFlag part and set back to new for main task.
- 08:43 AM feature request #8180 (Resolved): Add property term "Presence/Absence" to CDM default terms
- 08:42 AM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
- A minor issue: can we have the order of the flags in the same order as in the assistent. That makes it more intuitive...
- 08:39 AM feature request #8447 (Closed): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
08/23/2019
- 04:12 PM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > In this case we do not need an "empty" choice for the dropdowns... - 02:59 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
- Andreas Müller wrote:
> In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs... - 10:07 AM feature request #8475: Adapt applicable state detail view elements to FeatureState
- In general this ticket can be closed as it works as expected.
- 10:06 AM feature request #8475: Adapt applicable state detail view elements to FeatureState
- I wonder if we could reduce the availability of "InapplicableIf" and "OnlyApplicableIF" to term nodes of term type "...
- 10:02 AM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
- In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs to have both, feature an...
- 04:01 PM feature request #8486: Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Can you add the changes to the ticket or is this not yet pushed?
- 04:00 PM feature request #8486 (Resolved): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- I preliminary give this to me to not forgot reviewing the next function. Disabling already is a good solution though ...
- 09:54 AM feature request #8486 (Closed): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Indicate the doubtful state in the taxon navigator somehow. E.g. by symbol "?" that we normally use for doubtful info...
- 03:34 PM feature request #8282: Implement placementDoubtful in TaxEditor
- the setDoubtful menu item is now implemented for the navigator, but it was not possible to set the menu to invisible ...
- 01:45 PM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
- 12:24 PM feature request #8282: Implement placementDoubtful in TaxEditor
- ok
- 11:37 AM feature request #8282: Implement placementDoubtful in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Also we should add the doubtful flag to the "Set flags" method in... - 11:35 AM feature request #8282: Implement placementDoubtful in TaxEditor
- Katja Luther wrote:
> the checkbox is moved below the publish checkbox.
works as expected. Ticket can be closed o... - 11:34 AM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
- Andreas Müller wrote:
> Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right ... - 09:52 AM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
- the checkbox is moved below the publish checkbox.
- 09:51 AM feature request #8282: Implement placementDoubtful in TaxEditor
- Andreas Müller wrote:
> The new field should be close to the taxon node information as it is from taxon node. Curren... - 03:16 PM bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- The more sophisticated way is to adapt the underlying method to return an EnumSet, not an ordinary Set. With EnumSet ...
- 01:12 PM bug #8482 (Feedback): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- The problems obviously is fixed and the implementation looks good. Why did you comment the commit with "workaround"? ...
- 03:11 PM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
- Andreas Müller wrote:
> Generally it works and can be closed.
>
> Open issue (new ticket?) is that Characters can... - 12:06 PM feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
- Adjusted the context menu entries. Closing ticket.
- 09:50 AM feature request #8235: Create separate menu for term tree editors for each term tree type
- Generally it works and can be closed.
Open issue (new ticket?) is that Characters can not be added to Featuretrees... - 09:49 AM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
- Andreas Müller wrote:
> "New" and "Delete" is enough, we do not need "... Term Tree"
This seems not yet implement... - 02:37 PM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Hybrids are not a set of independent taxa but more a filter on ea... - 11:38 AM feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Andreas Müller wrote:
> Hybrids are not a set of independent taxa but more a filter on each group. So we should mayb... - 09:44 AM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- moving synonyms and hybrids is done.
- 09:42 AM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Andreas Müller wrote:
> "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't kn... - 01:06 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- my implementation now is generic.
> Also it might be nice to have a little test that it works. Have you tested in ... - 10:28 AM task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Kohlbecker wrote:
> Agreed ... and implemented in the way you pointed out.
The current implementation is ... - 10:21 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- To me it looks like commit 1a5b2194 is not related to *this* ticket. Can you please check?
- 12:07 PM task #8406 (Closed): specimens and occurrence code cleaning and harmonization
- dead code removed.
I think we can close this issue now since all open tasks have been copied to other tickets. - 09:04 AM task #8406: specimens and occurrence code cleaning and harmonization
- Andreas Kohlbecker wrote:
> thank you for fixing this.
>
> there are two commented code parts in this method:
> ... - 10:34 AM feature request #7450 (Closed): Allow setPublish for subtree to include misapplied names and pro parte synonyms
- Moved better reporting to new ticket #8487 and close *this* ticket.
- 10:33 AM feature request #8487 (New): Report results of set publish
- It should include numbers per each group (taxa, synonyms, MAN, ...)
Also those MAN, ppSyns, shared taxa, which wer... - 10:09 AM bug #8481 (Rejected): NPE when opening feature tree
- I agree. Had a look to the data and for some reason the term with the given id really doesn't exist anymore. Don't kn...
- 09:55 AM feature request #8470: Handle username constraints in user and group editing
- I will implement this for the next release.
- 09:31 AM feature request #3472 (Closed): Update name in source data when changing an accepted taxon into a synonym
- the new ticket is #8478 and the labels are adapted.
08/21/2019
- 04:12 PM bug #8481 (Feedback): NPE when opening feature tree
- Looking at the stacktrace this seem like corrupted data as the exception happen during TermRelationBase.getTerm().
... - 04:10 PM feature request #8485 (Closed): Add column groups to character matrix
- Does not have to be reviewed because still experimental
- 04:09 PM feature request #8485 (Resolved): Add column groups to character matrix
- Applied in changeset commit:taxeditor|c264cd9262db5bb03b83d94858c559cc985b8bc2.
- 03:09 PM feature request #8485 (Closed): Add column groups to character matrix
- Groups should reflect the hierarchy of the character tree.
- 04:10 PM feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
- 12:29 PM bug #8484 (New): Exception is swallowed in taxon navigator
- In a corrupt database with taxon nodes without classification I got the following exception in the log file.
However... - 11:49 AM task #8483 (New): Return EnumSets in EnumeratedTermVoc.getGeneralizationOf and similar methods
- This may prevent from errors like in #8482
- 11:46 AM bug #8482 (Resolved): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- Applied in changeset commit:cdmlib|244c62c6bee1863dfe79d71e0ecae7bdeb4d06b5.
- 11:18 AM bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- Can be reproduced by:
http://int.e-taxonomy.eu/cdmserver/integration_palmae/portal/taxon/ce870eca-0422-4a3c-b849-0... - 11:09 AM bug #8385 (Resolved): Open issues in DB preferences
- please review
- 09:17 AM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
- Hallo Andreas,
danke für deine Einschätzung. Da du mich in meiner Auffassung bestätigst, werde ich das "is accept... - 09:17 AM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
- Hallo Andreas,
das war mir völlig unbekannt, dass wir sowas überhaupt haben/hatten. Daher hatte ich das ganze...
08/20/2019
- 11:51 AM bug #8481: NPE when opening feature tree
- I get the same exception when trying to add an InapplicableIf to "Test Feature Tree" -> Citation -> Leaf color -> Ana...
- 11:47 AM bug #8481 (Rejected): NPE when opening feature tree
- When opening feature tree "Testdasdfa" on rem_conf_am I got
~~~
login : admin
editor version : 5.9.0.20190819225... - 11:45 AM feature request #8235: Create separate menu for term tree editors for each term tree type
- "New" and "Delete" is enough, we do not need "... Term Tree"
- 11:43 AM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
- Feature Tree Editors still have "New Structure Tree" and "New Property Tree" submenu.
Each Term type should have its...
08/19/2019
- 04:58 PM bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
- I would rather close this tickets because it was created only to handle the bug. All other issues will be adressed in...
- 04:55 PM feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
- Applied in changeset commit:taxeditor|362b3a0c58e4b2b8620477ce38a80e2a3553bd36.
- 04:15 PM feature request #8480 (Closed): Use DescriptionTypes for matrix descriptions
- 04:14 PM feature request #8480 (Resolved): Use DescriptionTypes for matrix descriptions
- Applied in changeset commit:cdmlib|0b616910ec8af247ee13843c5058b22ac24efff0.
- 04:11 PM feature request #8480 (Closed): Use DescriptionTypes for matrix descriptions
- 04:15 PM feature request #7957 (Closed): Add types for taxon description (as EnumSet)
- Adapted descriptive data set service to use DescriptionType. Tried aggregation and tested display in matrix editor. A...
- 04:11 PM task #8479 (In Progress): [PESI][FE] Cdm-2-Cdm import for FauEu
- Open issues:
* check if uuids are always kept for taxon nodes (sometimes addChild is used which probably creats co... - 03:21 PM feature request #8475: Adapt applicable state detail view elements to FeatureState
- Added applicable detail elements to TermNode details view. Available features are filtered to only contain parent fea...
- 03:19 PM feature request #8475 (Resolved): Adapt applicable state detail view elements to FeatureState
- 02:37 PM bug #8417: LazyInitializationException in TermDTO for media
- not important for this release -> move to 5.10
- 02:33 PM feature request #8478 (New): Follow up ticket for update empty name in source handling in TaxEditor
- We need a final implementation with a new wizard including the question if the name in sources should be taken from t...
- 01:27 PM feature request #8304: Name page redirects to according taxon depending on query parameter
- Hi Andreas, I think we have discussed this issue sometime at phone. Do you remember the results? Are they somewhere i...
- 10:16 AM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Ok, in generall this probably makes sense. Maybe I just wasn't used to it yet.
However, if this is the expected beha... - 09:40 AM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Andreas Müller wrote:
> Currently both methods do end in an unexpected state. After running the operation the old ta...
08/16/2019
- 10:36 PM bug #8385: Open issues in DB preferences
- ~~Restore button does not yet work for Distribution Editor status and area selection preferences~~
this is fixed - 10:33 PM bug #8385: Open issues in DB preferences
- ~~Distribution editor status selection: changes are not visible in Preferences view after reopening the preferences v...
- 10:27 PM bug #8385: Open issues in DB preferences
- ~~name.nomenclaturalStatus can not be removed by Reset Default~~
this is fixed. - 10:25 PM bug #8385: Open issues in DB preferences
- ~~some preferences are not deleted for NameDetailsView => deselect all and reopen preferences => 3 prefs stay selecte...
- 10:21 PM bug #8385: Open issues in DB preferences
- ~~ABCD import is now implemented on both sides, but "allow override" does not yet exist for "ABCD import provider"~~
... - 10:19 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> When opening Peferences - Distribution Editor for the first time the drop downs for some fie... - 10:12 PM bug #8385: Open issues in DB preferences
- >Name details view can not be set to "default" (always chooses enabled after reopening)
~~Now it always sets it ba... - 10:09 PM bug #8385 (Feedback): Open issues in DB preferences
- ~~When opening Peferences - Distribution Editor for the first time the drop downs for some fields were completely emp...
- 09:55 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Andreas Müller wrote:
> Please open a new ticket for the final implementation with a new wizard including the questi... - 09:51 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- The labels of the 2 menus should be equal except for the addition about the Name in Source. Is there a reason why you...
- 09:44 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Please open a new ticket for the final implementation with a new wizard including the question if the name in sources...
- 09:38 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- The method with setting the name should be moved down in menu
- 09:37 PM feature request #3472 (Feedback): Update name in source data when changing an accepted taxon into a synonym
- Currently both methods do end in an unexpected state. After running the operation the old taxon is dirty (and unsaved...
- 09:40 AM feature request #3472 (Resolved): Update name in source data when changing an accepted taxon into a synonym
- this is implemented now.
The setting of the name in source is configurable, but in editor a new wizard would be ne... - 09:24 PM bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
- I close this ticket as there is a follow up ticket.
- 09:22 PM feature request #8299 (Feedback): add typification column to scientific name and homotypical group in cdm light
- Testing is time consuming for me. Please ask Walter if it is as expected.
- 09:20 PM feature request #8334 (Closed): Move sources for type designations to details view
- 09:17 PM bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
- Hmm, now the warning is also shown if the misapplication is referenced e.g. by an identification key which is not nec...
- 09:05 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't know if it is maybe better ...
- 09:01 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- I think we may move synonyms below taxa as they are the second biggest group. Misapplications and pro parte synonyms ...
- 08:59 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Hybrids are not a set of independent taxa but more a filter on each group. So we should maybe move it down (directly ...
- 08:57 PM feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- If only Misapplications and/or pro parte synonyms are selected the finish button is not enabled but should (at least ...
- 08:43 PM feature request #8282: Implement placementDoubtful in TaxEditor
- Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right click menu.
- 12:24 PM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
- The new field should be close to the taxon node information as it is from taxon node. Currently it is in the middle o...
- 03:22 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
- Since #6794 it is possible to distinguish term collections which include duplicates (e.g. structure trees which inclu...
- 03:09 PM feature request #8476 (Closed): Implement support for TermCollection.isFlat in TaxEditor
- Often term collections are meant to be a flat list or set without hierarchical dependencies. For these collections th...
- 03:08 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
- 02:58 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
- In general the ordering seems to work now.
- 02:56 PM bug #8465 (Feedback): Term nodes order in term trees is ignored in term tree editor
- As Term nodes should be not always ordered anymore (TermCollection.orderRelevant flag) we could implement this alread...
- 02:45 PM feature request #8474 (Closed): Make TermCollection.orderRelevant usable for TermTrees
Dazu müsste es:
1. ~~editierbar sein~~
2. ~~Der TermTree müsste unterschiedlich sortiert angezeigt werden, je n...- 01:22 PM bug #8473 (New): Migrate from GrantedAuthoritiesImpl to CdmAuthority and Role
- First of all the handling of authorities needs to be migrated and tested to AuthorityBase (by AK). Once this is done ...
- 01:14 PM bug #4884 (Closed): Update Reference_AUD.refType to allow NULL
- I guess this works.
- 12:41 PM feature request #8472 (Closed): Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- Currently it uses marker type "Computed" to mark the descriptions.
... also needs update script for existing descr... - 12:38 PM feature request #7957: Add types for taxon description (as EnumSet)
- This has been implemented now as an EnumSet for better performance.
Please review.
- 10:38 AM feature request #7957 (Resolved): Add types for taxon description (as EnumSet)
- Applied in changeset commit:cdmlib|1962891319edeb12380aa69994467f674a96ce96.
- 12:35 PM feature request #8471 (Closed): Computed descriptions should be disabled in TaxEditor
- Taxon descriptions being computed (DescriptionBase.types contains COMPUTED or AGGREGATED) should be disabled for edit...
- 12:16 PM feature request #8398: Add nomenclatural code edition to ruleConsidered
- As this was your (phycobank) requirement I give it to you for review.
- 12:15 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Maybe we can do this in 5.10 latest so it is close to the model change.
I think we should add it to configuration ... - 12:12 PM feature request #8404 (Closed): Add update step list within updaters
- Seems to work as expected and is very nice.
- 12:11 PM feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
- So I close this ticket.
- 12:10 PM feature request #8454: Only allow certain patterns as username and groupname
- This should be fixed. Who ever wants please review. I tested creating a new user and a group in TaxEditor. For both w...
- 12:04 PM feature request #8470 (Closed): Handle username constraints in user and group editing
- Since #8454 a regex exist for usernames and groupnames.
For new usernames and groups the TaxEditor should validat... - 11:47 AM feature request #8441: Add FeatureState class
- Please review.
Maybe there are issues with orphan removal handling. - 11:45 AM feature request #8441 (Resolved): Add FeatureState class
- This is implemented, old implementation still exists in parallel. Should be removed with next update script.
SDD I... - 11:41 AM feature request #8469 (In Progress): Open PolytomousKeyGenerator issues
- * ~~adapt dependency handling to new FeatureState handling~~
* in general improve the handling of dependencies, mayb... - 11:35 AM task #8468 (Closed): Remove old InapplicableIf tables
08/15/2019
- 04:09 PM feature request #7597 (Closed): Aggregate and persist descriptions on taxon level
- Closing this feature. No review needed as this is still experimental. Follow up ticket #8467
- 04:08 PM feature request #8467 (Closed): Save a "snapshot" of the SpecimenDescriptions used for aggregation
- When aggregating SpecimenDescriptions to a TaxonDescriptions the SDs used should be cloned and associated as sources ...
- 03:57 PM feature request #8464: Make AuthorityBases unique
- This seems to be more difficult then I thought.
In general hibernate allows the ,uniqueConstraints=@UniqueConstra... - 02:59 PM feature request #8441 (In Progress): Add FeatureState class
- 02:21 PM bug #8465 (Resolved): Term nodes order in term trees is ignored in term tree editor
- Applied in changeset commit:taxeditor|74a9e9d7da34b3e2d6a895a7b091364125c6f648.
- 12:19 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
- So, if the flag is switched on, the tree should be ordered by tree order, otherwise alphabetically (or by any other c...
- 12:06 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
- Note: The new TermCollection base class has a flag now called "orderRelevant". This should in future decide if the or...
- 10:32 AM bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
- ich hatte gerade einen neuen Feature Term "Chemophenetics" für den Cichorieae Feature Tree geschaffen , den wollte ic...
- 01:52 PM task #8466 (Closed): Delete FeatureTree tables
- FeatureTree has been moved to TermCollection. The old tables have not yet been deleted to have the chance to find pos...
- 12:39 PM feature request #8442: Add fields to handle external terms to DefinedTermBase or TermBase
- Andreas Müller wrote:
> This should be fixed. Also added new field "importMethod" and extracted all data to an exter... - 09:15 AM feature request #8334 (Resolved): Move sources for type designations to details view
08/14/2019
- 11:45 AM feature request #7957 (In Progress): Add types for taxon description (as EnumSet)
- 10:59 AM task #7099: Make CdmAuthority a persistable class
- forgot to implement uniqueness. Moved to #8464
- 10:41 AM task #7099 (Resolved): Make CdmAuthority a persistable class
- This is implemented for now. Old GrantedAuthorities still exist and are in use but we could easily switch to new ones...
- 10:56 AM feature request #8464 (New): Make AuthorityBases unique
- The old GrantedAuthorityImpl.authority was unique and NotNull. This was forgotten to implement when implementing CdmA...
- 10:51 AM feature request #8442 (Resolved): Add fields to handle external terms to DefinedTermBase or TermBase
- This should be fixed. Also added new field "importMethod" and extracted all data to an external embeddable class "Ext...
- 10:48 AM feature request #3972 (Closed): Strictly validate username to not null and not empty
- This should be fixed by fixing #8454
- 10:47 AM feature request #8454 (Resolved): Only allow certain patterns as username and groupname
- This should be solved now and seems to work. Still needs testing in TaxEditor and maybe other surroundings.
- 10:45 AM bug #8429 (Resolved): Rename DeterminationEvent_Reference.setOfReferences_id
- This is fixed now by renaming the parameter in model from setOfReferences to references.
Making it a set of sourc... - 10:45 AM feature request #8463 (New): Make DeterminationEvent.references sources
- Currently the link to Reference but they should link to Source. DeterminationEvent should probably become a Sourceabl...
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