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From 08/11/2019 to 09/09/2019

09/09/2019

06:50 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
Tested: new genus with new reference: no problems
Tested: new basionym or replaced synonym with new reference: no pr...
Wolf-Henning Kusber
03:34 PM bug #8374 (Duplicate): Save genus generated for a species with a different reference
duplicates #8462 Andreas Kohlbecker
03:10 PM feature request #8014: Label wording im UI Name Editor
done, please review. Andreas Kohlbecker
03:09 PM feature request #8014 (Resolved): Label wording im UI Name Editor
Applied in changeset commit:cdm-vaadin|218b286e1ebf5a962c239f2bd726df714652257e. Andreas Kohlbecker
03:09 PM Revision 218b286e (cdm-vaadin): fix #8014 improving lables related to validation and replaced bas...
Andreas Kohlbecker
01:21 PM bug #8531 (In Progress): factual data and media view always opened when opening taxon
Katja Luther
01:20 PM bug #8531 (Resolved): factual data and media view always opened when opening taxon
Katja Luther
01:02 PM bug #8531 (Closed): factual data and media view always opened when opening taxon
the factual data and media view should stay closed when opening a new taxon.
when opening the distribution editor th...
Katja Luther
01:16 PM Revision 4297a77c (taxeditor): ref #8531: open facts view only if it was open before
Katja Luther
01:06 PM Revision 0c80b317 (taxeditor): ref
Katja Luther
01:05 PM Revision bcf07bcc (taxeditor): ref #8385: minor in preferencesUtil
Katja Luther
11:54 AM feature request #8528: new author should be entered atomised
If possible we should make this configurable. I guess there is a reason why we currently have it as it is. Andreas Müller
09:28 AM feature request #8528 (New): new author should be entered atomised
mail of ERS:
wenn man einen neuen Autoren einer bibliographischen Referenz eingeben will, ist der Cache default-m...
Katja Luther
11:05 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
Alles war vorher abgespeichert. Nur existierenden Type-Text aufgemacht, Text hinzugefügt, gespeichert.
~~~
login ...
Katja Luther
11:04 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
Hallo,
der Fehler scheint bei einfachen nom. details nicht aufzutauchen, also wenn nur eine Seitenangabe vorliegt.
...
Katja Luther
11:04 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
Hallo,
und jetzt einfach nach Anfügen der nom. Referenz des Synonyms und speichern – der Name war offenbar noch nich...
Katja Luther
11:04 AM bug #8530 (New): Multiple Representation Exceptions when editing Textual Type Designations
there is again a multiple representation exception when editing nomenclatural reference and textual type designation.... Katja Luther
10:02 AM feature request #8529 (New): [DISCUSS]Display of aggregated descriptions
NK:
Für die Ausgabe der Daten im Portal sind sicher noch darstellungstechnische Anpassungen nötig, ich stelle mir ...
Patrick Plitzner
07:55 AM Revision 5d0c723b (taxeditor): setup project: forcing update of snapshot builds
Andreas Kohlbecker
07:53 AM Revision e0a54776 (taxeditor): fixing broken imports
Andreas Kohlbecker

09/06/2019

10:59 PM bug #8527: TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is...
fixed! Please review once the server is updated. Andreas Kohlbecker
10:58 PM bug #8527 (Resolved): TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost whe...
Applied in changeset commit:cdm-vaadin|81472d534399543096e4e64d32b0026f5a8a6023. Andreas Kohlbecker
09:58 PM bug #8527 (Closed): TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when ...
# THIS BUG IS CRITICAL SINCE IT CAN CAUSE UN-NOTICED DATA LOSS!!!!!!!!
This bug affects the widgets for 'Validati...
Andreas Kohlbecker
10:58 PM Revision 81472d53 (cdm-vaadin): fix #8527 fixing loss of name relations when saving the name edit...
Andreas Kohlbecker
10:29 PM Revision 20abbff9 (taxeditor): ref #8398 adapting taxeditor to changes in NameRelationship
Andreas Kohlbecker
10:04 PM feature request #8408: add nomenclatural code select to NomenclaturalStatusRow
please review once the server is up to date Andreas Kohlbecker
07:38 PM feature request #8408 (Resolved): add nomenclatural code select to NomenclaturalStatusRow
Applied in changeset commit:cdm-vaadin|ee2bbfeb4aaffddede5d2788b9e3db733282e591. Andreas Kohlbecker
10:04 PM feature request #8409: add nomenclatural code select to NameRelationField
please review once the server is up to date Andreas Kohlbecker
10:02 PM feature request #8409 (Resolved): add nomenclatural code select to NameRelationField
Applied in changeset commit:cdm-vaadin|7ee1c79ac0fd622d7a7e7d8acf3963aaae2cf109. Andreas Kohlbecker
10:01 PM Revision 7ee1c79a (cdm-vaadin): fix #8409 adding select for code editions to NameRelationField
Andreas Kohlbecker
09:37 PM Revision 29de4478 (cdmlib): ref #8398 adding codeEdition to NameRelationship constructors and to ...
Andreas Kohlbecker
09:34 PM feature request #8398: Add nomenclatural code edition to ruleConsidered
excellently implemented, thanks a lot!
I extended the protected constructors in `NameRelationship` and the related...
Andreas Kohlbecker
07:38 PM Revision ee2bbfeb (cdm-vaadin): fix #8408 adding select for code editions to nom status row
Andreas Kohlbecker
07:35 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
... once the server is updated ;-) Andreas Kohlbecker
06:38 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
please review Andreas Kohlbecker
06:35 PM bug #8462 (Resolved): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationW...
Applied in changeset commit:cdm-vaadin|c80e35c14a41f15fc00f6bfa0cd5c46eadf5b37a. Andreas Kohlbecker
06:35 PM Revision c80e35c1 (cdm-vaadin): fix #8462 fuffering new blocking registrations for later associat...
Andreas Kohlbecker
02:40 PM Revision fe036473 (taxeditor): Merge branch 'hotfix/5.9.3'
jenkins
02:29 PM Revision b52b3d9a (taxeditor): Disable taxon filter + enable text filter on taxon names
Patrick Plitzner
02:28 PM Revision eac96113 (taxeditor): Disable taxon filter + enable text filter on taxon names
Patrick Plitzner
02:22 PM Revision f82960da (taxeditor): fix #8526: fix problem swap synonym and taxon
Katja Luther
02:19 PM bug #8516: Specimen editor (list) can not find FieldUnits with data only in protected titleCache
correct the `*` at the beginning of the search term helps.
I suggest renaming this issue to "improve and harmonize...
Andreas Kohlbecker
02:13 PM bug #8526 (Resolved): Swap synonym with accepted taxon does not work
Applied in changeset commit:taxeditor|cd9c544a43ceb69db7609d422f5c68abc1ccc115. Katja Luther
02:08 PM bug #8526 (Resolved): Swap synonym with accepted taxon does not work
the swap synonym with accepted taxon handler/operation calls the service but saves the old taxon afterwards and the n... Katja Luther
02:13 PM Revision cd9c544a (taxeditor): fix #8526: fix problem swap synonym and taxon
Katja Luther
01:39 PM Revision 9a7757ab (taxeditor): Updated version in pom / project files to taxeditor version : 5.9....
jenkins
01:13 PM Revision edec16d2 (cdmlib): ref #8248 Create State when termType is STATE
Patrick Plitzner
12:49 PM Revision 530ab926 (taxeditor): Revert "Add checkboxes for associating the ABCD unit with the fiel...
This reverts commit 7e19a94091e29289d12df03cf2ad3bcb78b29b81. Patrick Plitzner
11:01 AM bug #8520 (Rejected): Adding new user Group fails
Ticket rejected. Andreas Kohlbecker
10:57 AM bug #8521: User details view: Change password button accessible for ROLE_USER_MANAGER
according to what I wrote in https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/CdmAuthorisationAndAccessControl th... Andreas Kohlbecker
09:44 AM Revision fc593598 (cdmlib): Add flag for associating the ABCD unit with the field unit
Patrick Plitzner
09:44 AM Revision caa2350d (cdmlib): Revert "Add flag for associating the ABCD unit with the field unit"
This reverts commit 55b1bb529f2938de88202fd3b51447cab3cc5b58. Patrick Plitzner
09:44 AM Revision 56dbf016 (cdmlib): ref #8248 Fix lazy loading problems for OWL import
Patrick Plitzner
09:44 AM Revision bcd7cc5a (taxeditor): Fix compile errors
Patrick Plitzner
09:40 AM Revision a7c1650e (cdmlib): ref #1444, ref #8509 improve ZoologicalNameCacheStrategy for infraspe...
Andreas Müller
09:29 AM Revision 7e19a940 (taxeditor): Add checkboxes for associating the ABCD unit with the field unit->...
Patrick Plitzner
08:46 AM Revision c084a011 (taxeditor): adapt TaxEditor to new name type
Andreas Müller
08:12 AM Revision 275bfcd0 (cdmlib): add Vlaans to Language uuids
Andreas Müller
08:12 AM Revision 0f44e94a (cdmlib): ref #1444, ref #8509 improve ZoologicalNameCacheStrategy for infraspe...
Andreas Müller

09/05/2019

11:43 PM Revision 27f61726 (cdmlib): cleanup
Andreas Müller
11:32 PM Revision b8911db5 (cdmlib): ref #1444, ref #8509 fix lastAction handling for ERMS
Andreas Müller
11:32 PM Revision 31b1547a (cdmlib): cleanup and remove ITaxonNameBase.getNomenclaturalCode
Andreas Müller
11:32 PM Revision b47d72dc (cdmlib): rename TaxonNameDefaultCacheStrategyTest
Andreas Müller
10:20 PM bug #8521: User details view: Change password button accessible for ROLE_USER_MANAGER
I think not only the change password button but generally all User related issues need to be accessible. Can you plea... Andreas Müller
05:08 PM bug #8521 (New): User details view: Change password button accessible for ROLE_USER_MANAGER
The "Change password button" mus also accessible for the Role `ROLE_USER_MANAGER` not only for `Admin` Andreas Kohlbecker
10:16 PM bug #8520 (Feedback): Adding new user Group fails
Isn't it self-explaining: "must match "[A-Za-z0-9_\.\-]+"?
As discussed we have a rule since 5.9 that usernames an...
Andreas Müller
03:47 PM bug #8520 (Rejected): Adding new user Group fails
I attempted to created the Group "User Manager", this failed with the following exception:
~~~
login : admin
...
Andreas Kohlbecker
10:02 PM bug #8516: Specimen editor (list) can not find FieldUnits with data only in protected titleCache
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Have you tried with Asterisk search. The specimen bulk editor...
Andreas Müller
09:52 PM Revision 3a180cbe (cdmlib-apps): ref #8508 improve ERMS validation
Andreas Müller
09:51 PM Revision 7e83bb1d (cdmlib-apps): ref #1444 force titleCache update for ERMS import
Andreas Müller
09:51 PM Revision f6c86214 (cdmlib-apps): ref #8508 improve import-export pipeline for ERMS
Andreas Müller
09:49 PM Revision de8788bd (cdmlib-apps): cleanup
Andreas Müller
09:49 PM Revision dc55d92e (cdmlib-apps): ref #1444, ref #8509 Updates for ERMS reference handling
Andreas Müller
09:47 PM Revision 2eaad1b1 (cdmlib-apps): ref #1444, ref #8509 LastAction(Date) handling for ERMS
Andreas Müller
06:59 PM Revision 3f545c52 (cdmlib-apps): minor
Andreas Müller
06:57 PM Revision f13666da (cdmlib-apps): ref #8104 adapt CubaExcelImport to lastNamePart
Andreas Müller
06:56 PM Revision c195f4fb (cdmlib-apps): fix #8513 adapt some Activators to missing CdmUtils method
Andreas Müller
06:15 PM bug #8522 (New): Make type status mandatory in Name type designation editor
Make "type status" mandatory in "Name type designation editor"
Record can be saved without entering a name status.
Wolf-Henning Kusber
05:48 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
The solution to this problems is tightly related to #7843.
Since I am assuming that we will decide for strategy 3....
Andreas Kohlbecker
05:23 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
this seems to happen, when the first name editor has been opened for a new name to be registered and has not jet been... Andreas Kohlbecker
05:45 PM task #7843: blocking registrations can get lost when first TaxonNamePopupEditor with new name is ...
I consider strategy 3 from above the most user friendly and robust solution Andreas Kohlbecker
05:19 PM Revision 62de7ebf (taxeditor): Merge branch 'hotfix/5.9.2'
jenkins
04:03 PM bug #8519 (Closed): ROLE_USER_MANAGER missing in FirstDataInserter
done Andreas Kohlbecker
04:01 PM bug #8519 (Resolved): ROLE_USER_MANAGER missing in FirstDataInserter
Applied in changeset commit:cdmlib|06e3b3f860d1e1813e97118ead71807ca7ee6414. Andreas Kohlbecker
03:42 PM bug #8519 (Closed): ROLE_USER_MANAGER missing in FirstDataInserter
The role `ROLE_USER_MANAGER` is missing in data bases and can not be created via the Taxeditor, see Andreas Kohlbecker
04:01 PM Revision 06e3b3f8 (cdmlib): fix #8519 adding ROLE_USER_MANAGER to FirstDataInserter
Andreas Kohlbecker
03:34 PM bug #7991: GrantedAuthority selection dialog extremly slow
this is a massive problem for me. This dialog is completely unusable. Andreas Kohlbecker
03:26 PM bug #8377: TypeDesignationsEditors: Delete must not be allowe before the workingset is saved
please review Andreas Kohlbecker
03:25 PM bug #8377 (Resolved): TypeDesignationsEditors: Delete must not be allowe before the workingset is...
Applied in changeset commit:cdm-vaadin|66af3161e72892bc06cb3ca9d9eb6e292f87c2fa. Andreas Kohlbecker
03:25 PM Revision 66af3161 (cdm-vaadin): fix #8377 disabling delete buttons in editors for new type design...
Andreas Kohlbecker
03:14 PM Revision 8a925e42 (taxeditor): ref #8389: adapt term preference handling
Katja Luther
03:13 PM Revision 1ced89e3 (taxeditor): ref #8389: fix problems with search preferences
Katja Luther
03:11 PM Revision 05bfe276 (taxeditor): ref #8389: fix problems with search preferences
Katja Luther
01:35 PM Revision 35910f47 (taxeditor): ref #8389: common name language combo needs termtype
Katja Luther
01:33 PM Revision 03fa610a (taxeditor): ref #8389: common name language combo needs termtype
Katja Luther
01:03 PM Revision d4527e75 (taxeditor): ref #8389: adapt term preference handling for nametypedesignation
Katja Luther
01:00 PM Revision acd9267c (taxeditor): ref #8389: adapt term preference handling for nametypedesignation
Katja Luther
12:53 PM Revision 62ae7823 (taxeditor): ref #8389: adapt term preference handling
Katja Luther
12:29 PM Revision ad368340 (taxeditor): ref #8389: fix preferred TaxonFeature Tree creation
Katja Luther
12:28 PM Revision 901d433e (taxeditor): ref #8389: fix preferred TaxonFeature Tree creation
Katja Luther
12:01 PM task #8518 (New): [PESI][DW] PESI export rules documented
Source:
Taxon:
* Displayname: seems not to be used in PESI portal; creation unclear, in ERMS SQL export only t...
Andreas Müller
10:58 AM Revision 0be6d8aa (taxeditor): ref #8389: minor
Katja Luther
10:57 AM Revision 45d7ee4e (taxeditor): ref #8389: minor
Katja Luther
10:08 AM Revision d947e6ad (taxeditor): ref #8389: fix NPE and smaller issues in preferences
Katja Luther
10:07 AM Revision e3fb78b6 (taxeditor): ref #8389: fix NPE and smaller issues in preferences
Katja Luther

09/04/2019

07:00 PM bug #8377 (In Progress): TypeDesignationsEditors: Delete must not be allowe before the workingset...
Andreas Kohlbecker
06:58 PM bug #8376: RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting o...
please review Andreas Kohlbecker
06:57 PM bug #8376 (Resolved): RegistrationWorkingsetEditor: prevent clicking any futher buttons after the...
Applied in changeset commit:cdm-vaadin|4e9b68d2176a076bf7bd07ee6680f752f2223e2d. Andreas Kohlbecker
06:57 PM Revision 4e9b68d2 (cdm-vaadin): fix #8376 disabling add new button after first click
Andreas Kohlbecker
06:18 PM Revision 11c97eb8 (taxeditor): logging feedback on connecting local dev cdm instance
Andreas Kohlbecker
05:56 PM Revision ca8b3fe8 (taxeditor): ref #8505 inverting incorrect null check
Andreas Kohlbecker
04:27 PM bug #8516: Specimen editor (list) can not find FieldUnits with data only in protected titleCache
Andreas Müller wrote:
> Have you tried with Asterisk search. The specimen bulk editor like all bulk editor do only a...
Andreas Kohlbecker
03:21 PM bug #8516 (Feedback): Specimen editor (list) can not find FieldUnits with data only in protected ...
Have you tried with Asterisk search. The specimen bulk editor like all bulk editor do only an exact search. The speci... Andreas Müller
04:01 PM feature request #8342: shift field Field number
please review Andreas Kohlbecker
04:01 PM feature request #8342 (Resolved): shift field Field number
Applied in changeset commit:cdm-vaadin|764269a10375767ce378c5e51a81639543a53eae. Andreas Kohlbecker
04:01 PM Revision 764269a1 (cdm-vaadin): fix #8342 solving layout problems of the AbstractTimePeriodField
Andreas Kohlbecker
03:50 PM Revision 079dd1a6 (taxeditor): ref #8489: disable combo for local taxonnode sort preference if no...
Katja Luther
03:49 PM Revision 41b6cbb7 (taxeditor): ref #8489: disable combo for local taxonnode sort preference if no...
Katja Luther
03:33 PM Revision 43b350e8 (taxeditor): ref #8489: taxon node order preferences
Katja Luther
03:32 PM Revision 14f76d1e (taxeditor): ref #8489: taxon node order preferences
Katja Luther
03:19 PM Revision d54dbb90 (taxeditor): ref #8489: fix preference and term issues - continue
Katja Luther
03:19 PM Revision 95ef4486 (taxeditor): fix preferences and term issues
Katja Luther
03:17 PM Revision d5a2a496 (taxeditor): ref #8489: fix preference and term issues - continue
Katja Luther
03:08 PM Revision cee6ae63 (taxeditor): Updated version in pom / project files to taxeditor version : 5.9....
jenkins
02:38 PM Revision 876d7bb3 (cdmlib): ref #8505 adapting ApplicationConfiguration
Andreas Kohlbecker
11:57 AM bug #8517 (Resolved): SpecimenOrObservation: data from protected titleCache missig in portal pages
please review Andreas Kohlbecker
11:55 AM bug #8517: SpecimenOrObservation: data from protected titleCache missig in portal pages
this is actually a problem in the `DerivedUnitFacadeCacheStrategy` which misses to respect protected `FieldUnit` titl... Andreas Kohlbecker
11:56 AM Revision c487ac2e (cdmlib): ref #8517 DerivedUnitFacadeCacheStrategy handling protected FieldUnit...
Andreas Kohlbecker
11:14 AM Revision eba7ec9d (taxeditor): ref #8505 adapting taxeditor to changes in ConfigFileUtil
Andreas Kohlbecker
10:33 AM Revision 2169c8d6 (cdmlib): ref #8505 removing test code
Andreas Kohlbecker
10:31 AM Revision 805b1fcf (cdmlib): ref #8505 making getCdmHomeSubDirFallback() static again
Andreas Kohlbecker
09:40 AM Revision 8a7e7d33 (taxeditor): fix preferences and term issues
Katja Luther
02:31 AM Revision 66061a00 (cdmlib): ref #1444, ref #8509 fix problems in TimePeriod mapping and toXXX method
Andreas Müller
02:31 AM Revision 7efb614a (cdmlib): ref #1444, ref #8509 add last action mapping
Andreas Müller
02:31 AM Revision 30643752 (cdmlib): ref #1444, ref #8509 add DOI mapper
Andreas Müller
02:31 AM Revision 6e9df385 (cdmlib): ref #1444, ref #8509 better handling of trim in mappers
Andreas Müller
02:31 AM Revision b1674bbf (cdmlib): cleanup
Andreas Müller
02:31 AM Revision 563333d2 (cdmlib): minor
Andreas Müller
02:30 AM Revision bb97054a (cdmlib-apps): minor
Andreas Müller

09/03/2019

06:51 PM bug #8517 (Resolved): SpecimenOrObservation: data from protected titleCache missig in portal pages
The following portal pages are missing to show data from protected SpecimenOrObservation.titleCaches:
* Registrati...
Andreas Kohlbecker
06:49 PM bug #8516 (Feedback): Specimen editor (list) can not find FieldUnits with data only in protected ...
while the *Specimen editor (list)* misses finding the below shown FielUnits the *Specimen editor (tree)* finds them ... Andreas Kohlbecker
06:06 PM bug #6523: Correct display of misspellings in synonymy
Andreas Kohlbecker wrote:
> Guten Morgen,
>
> ich bin hinsichtlich einer endgültigen Lösung leidenschaftslos und...
Andreas Kohlbecker
05:04 PM task #8512: Consider making Registration a subclass of IdentifiableEntity
As far as I understood will PhycoBank repeat the same registration that has been done in another registration.
Thi...
Andreas Kohlbecker
04:54 PM task #8512: Consider making Registration a subclass of IdentifiableEntity
We first need more information about the semantic of the additional registration. Should it be a pure clone like in G... Andreas Müller
12:59 PM task #8512 (New): Consider making Registration a subclass of IdentifiableEntity
For Phycobank it is needed to refer to external registration identifiers.
E.g.: A registration made in mycobank, z...
Andreas Kohlbecker
04:12 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Müller wrote:
> Andreas Müller wrote:
> > The test ConfigFileUtilTest.testGetFolderSeperator does not work ...
Andreas Kohlbecker
04:11 PM task #8513: CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
if there are no problems in the products a review by another person will not be needed and the ticket can be closed. Andreas Kohlbecker
04:09 PM task #8513 (Resolved): CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
Applied in changeset commit:cdmlib|c3fca4bd9b4120f48b605f36f5efc59dd8e4bba8. Andreas Kohlbecker
04:08 PM task #8513 (Closed): CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
follow up to #8189
The getResourceFolderSeperator() method is not needed at all. The separator character is only u...
Andreas Kohlbecker
04:09 PM Revision c3fca4bd (cdmlib): fix #8513 removing MUST-EXIST file and getResourceFolderSeperator() m...
Andreas Kohlbecker
03:29 PM Revision 768f6835 (cdmlib): ref #8505 renaming method to getResourceFolderSeperator() and adaptin...
Andreas Kohlbecker
03:12 PM task #8505 (Resolved): ConfigFileUtil: turn all spring bean methods into not statical methods.
Applied in changeset commit:cdmlib|68ea5e65a8f844fef8efbf698f53f4fbfa6367b3. Andreas Kohlbecker
03:11 PM task #8505 (In Progress): ConfigFileUtil: turn all spring bean methods into not statical methods.
Andreas Kohlbecker
03:12 PM Revision 68ea5e65 (cdmlib): fix #8505 turning statical methods of ConfigFileUtil into non statica...
Andreas Kohlbecker
10:00 AM bug #8511 (Closed): The structure path in the character details view should have a line break
As seen in the screen shot, a large structure path expands the width of the details view so that the user has to scro... Patrick Plitzner
09:51 AM bug #8510 (New): Non unique object exception when creating FeatureStates
I could reproduce this by creating about 4-5 FeatureStates for a character tree, then save, and then create another 3... Patrick Plitzner

09/02/2019

05:29 PM Revision ae1db989 (cdmlib-apps): new PESI Source and some cleanup
Andreas Müller
05:28 PM Revision a99910b1 (cdmlib-apps): ref #8509 link and notes for ERMS source export
Andreas Müller
04:59 PM Revision ca169a1e (cdmlib-apps): ref #8509 improve findKingdomIdFromTreeIndex
Andreas Müller
04:57 PM Revision 2741552d (cdmlib-apps): ref #8508 further improvements to ERMS pipeline validator
Andreas Müller
04:56 PM Revision 33f66be4 (cdmlib-apps): cleanup
Andreas Müller
04:55 PM Revision 3d4c80f2 (cdmlib-apps): ref #1444 add year to ErmsReferenceImport and not yet handled fo...
Andreas Müller
04:54 PM Revision 292c6d7f (cdmlib-apps): cleanup and remove pureNames from ERMSExport (not existing)
Andreas Müller
04:49 PM Revision 1893cc6d (cdmlib-apps): ref #1444 minor changes in ErmsImportActivator
Andreas Müller
04:46 PM Revision b59d1b6d (cdmlib): ref #1444 Add TimePeriodMapper for Referece.year import
Andreas Müller
04:46 PM Revision 42798909 (cdmlib): cleanup
Andreas Müller
01:12 PM Revision 83d22c83 (taxeditor): Merge branch 'hotfix/5.9.1'
jenkins
11:10 AM Revision 0b7666e2 (taxeditor): fix NPE in NomenclaturalStatusElement
Katja Luther
11:08 AM Revision 5e692cf1 (taxeditor): Updated version in pom / project files to taxeditor version : 5.9....
jenkins
10:27 AM Revision 63a07f6f (taxeditor): fix NPE in NomenclaturalStatusElement
Katja Luther
08:59 AM bug #8488 (In Progress): Characters can not be added to feature trees
It is now possible to add characters to a feature tree via the context menu. Patrick Plitzner
08:47 AM Revision f4abf969 (taxeditor): Fix log message
pplitzner
08:21 AM Revision e9a06541 (cdmlib): ref #8488 Recurse sub types of term types
pplitzner

09/01/2019

01:19 AM Revision 7034419f (cdmlib-apps): ref #8509 latest changes to PesiExportActivatorERMS
Andreas Müller
01:19 AM Revision 988f3c81 (cdmlib-apps): ref #8509 fix TaxonName id finding
Andreas Müller
01:18 AM Revision 3deab5ac (cdmlib-apps): cleanup
Andreas Müller
01:15 AM Revision 9ee93cb4 (cdmlib-apps): ref #8508 add some more columns to Reference validation
Andreas Müller
12:13 AM Revision adbd4a26 (cdmlib): fix compile error
Andreas Müller
11:30 PM Revision 6861320c (cdmlib-apps): ref #8509 update PesiExportActivatorERMS
Andreas Müller
11:22 PM Revision 308df7ca (cdmlib-apps): ref #8509 fix synonym handling in PesiTransformer
Andreas Müller
11:21 PM Revision 0f099b94 (cdmlib-apps): ref #8509 handle ClassCastException for Kingdom taxa
Andreas Müller
11:20 PM Revision 06039e15 (cdmlib-apps): ref #8509 update PesiExportActivatorERMS
Andreas Müller
11:14 PM Revision 3221710a (cdmlib-apps): cleanup
Andreas Müller
11:08 PM Revision 68fa46a4 (cdmlib-apps): ref #8508 add single reference diff to ERMS pipeline validation
Andreas Müller
11:06 PM Revision 2fda02f8 (cdmlib): Exception handling in DbSingleAttributeExportMapperBase
Andreas Müller
11:03 PM Revision 739fa8d6 (cdmlib): minor
Andreas Müller
06:59 PM Revision 96dc2943 (cdmlib-apps): ref #8508 add first ERMS pipeline tests
Andreas Müller
06:23 PM Revision cb547089 (cdmlib-apps): ref #8508 add first ERMS pipeline tests
Andreas Müller
06:21 PM Revision 2c7f7f9b (cdmlib-apps): ref #8509 changes to ERMS export activator
Andreas Müller
06:15 PM task #8509 (In Progress): [PESI][ERMS] Export ERMS data to PESI
Andreas Müller
06:10 PM Revision 72fbf719 (cdmlib-apps): ref #1444 latest changes on ERMS import
Andreas Müller
05:58 PM Revision 52825a0c (cdmlib-apps): cleanup
Andreas Müller
05:52 PM Revision 071a4ba6 (cdmlib): ref #8508 add uniqueResult methods to Source
Andreas Müller
05:52 PM bug #8508 (In Progress): [PESI][ERMS] ERMS import pipeline validation
Add validation for the correctnes of the ERMS->CDM->PESI pipeline Andreas Müller
05:49 PM Revision 990febd3 (cdmlib): ref #1444 add some ISO 639-3 languages for ERMS import
Andreas Müller
05:48 PM Revision cfe5663e (cdmlib): error handling in Language csv reading
Andreas Müller
05:47 PM Revision b2c0f0f3 (cdmlib): cleanup and add new TermVocabulary.NewInstance method
Andreas Müller

08/31/2019

03:00 PM Revision c6c1ede7 (cdmlib-apps): ref #1444 handle truncated source.name (reference.titleCache)
Andreas Müller
02:59 PM Revision cdf5b39d (cdmlib-apps): cleanup
Andreas Müller
02:56 PM Revision 649ffe58 (cdmlib-apps): ref #1444 rename ERMS transformer uuids
Andreas Müller
02:51 PM Revision c4879dac (cdmlib-apps): some changes to activators
Andreas Müller
02:50 PM Revision 8804a550 (cdmlib-apps): ref #1444 update pesi/erms sources and destinations
Andreas Müller
02:47 PM Revision 2002808b (cdmlib): ref #1444 handle truncated source.name (reference.titleCache)
Andreas Müller
02:27 PM Revision 21cbca85 (cdmlib): cleanup
Andreas Müller

08/30/2019

09:40 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Müller wrote:
> The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows systems ...
Andreas Müller
04:50 PM bug #8189 (Closed): Allow configuration of 'user.home' via the spring environment
all remaining tasks copied to #8505
and closing this ticket
Andreas Kohlbecker
08:59 PM feature request #8507 (New): Handle common names with same name and language but different area b...
As an example see: https://www.europlusmed.org/cdm_dataportal/taxon/eaa22491-9bf2-44f6-ba13-3eb3af6134a9
We could...
Andreas Müller
08:04 PM task #8391: Name page shows complete name information (II)
If you create subtasks you should put all tasks to subtasks. Otherwise ticket handling doesn't work well.
Preferred ...
Andreas Müller
05:17 PM task #8506 (New): Remove the UpdatableRoutingDataSource, related classes and configuration
The UpdatableRoutingDataSource has not been used for years and will never be reactivated since this concept would cau... Andreas Kohlbecker
04:54 PM Revision 949c21de (cdmlib-apps): try to fix some compile errors with FeaturNode.NewInstance
Andreas Müller
04:45 PM task #8505 (Closed): ConfigFileUtil: turn all spring bean methods into not statical methods.
follow up to #8189
in ConfigFileUtil
**1.** turn all spring bean methods into not statically methods.
**2.*...
Andreas Kohlbecker
04:41 PM Revision 2e8d7de8 (cdmlib-apps): adapt erms destination and some minor cleanup
Andreas Müller
04:40 PM Revision 9c9b6f73 (cdmlib-apps): cleanup
Andreas Müller
04:35 PM Revision 4095de9d (cdmlib): remove deprecated listRankSpecificRootNodes
Andreas Müller
04:30 PM task #8504 (Closed): Name page: allow hiding the Taxon section via settings
works as expected Andreas Kohlbecker
03:22 PM task #8504 (Resolved): Name page: allow hiding the Taxon section via settings
Applied in changeset commit:cdm-dataportal|c05ac190012f0f56d4d2b8d47d6e227eabe353ed. Andreas Kohlbecker
03:05 PM task #8504 (Closed): Name page: allow hiding the Taxon section via settings
Andreas Kohlbecker
03:22 PM Revision c05ac190 (cdm-dataportal): fix #8504 setting to hide the taxa section in the name page
Andreas Kohlbecker
02:37 PM feature request #8344 (Feedback): cdm light export: add dummy line in simpla facts table
I have no time to review this. But I remember a discussion with WGB where he complaint that the line endings are linu... Andreas Müller
01:08 PM feature request #8178 (Rejected): Auto-create absence/presence character for every structure
Rejecting ticket -> It does not always make sense to auto-create the "presence" character e.g. "Tepal Tip" is a struc... Patrick Plitzner
08:56 AM feature request #8299: add typification column to scientific name and homotypical group in cdm light
move to 5.10 for feedback of WB Katja Luther

08/29/2019

10:17 PM bug #8385: Open issues in DB preferences
can you move open issues to #8489? Andreas Müller
04:25 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> In local preferences Publish Flag for "Use Default" the Camel Case is used, not the current ...
Katja Luther
03:30 PM bug #8385: Open issues in DB preferences
In local preferences Publish Flag for "Use Default" the Camel Case is used, not the current correct label. E.g. (NotP... Andreas Müller
02:37 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Distribution editor: Restore default removes the entry "distribution.status.term" from the a...
Katja Luther
02:37 PM bug #8385: Open issues in DB preferences
Katja Luther wrote:
> Andreas Müller wrote:
> > Distribution editor status and area selection: restore default dele...
Andreas Müller
02:32 PM bug #8385: Open issues in DB preferences
Distribution editor: Restore default removes the entry "distribution.status.term" from the above table (and completel... Andreas Müller
02:30 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Distribution editor status and area selection: restore default deletes the values correctly ...
Katja Luther
02:28 PM bug #8385: Open issues in DB preferences
Distribution editor status and area selection: restore default deletes the values correctly but when opening the sele... Andreas Müller
02:21 PM bug #8385: Open issues in DB preferences
Names.NomenclaturalStatus restores default only after clicking 2x "Restore Default". Or more exact, clicking the firs... Andreas Müller
01:58 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Andreas Müller wrote:
> > Generally values recovered by "Restore default" often seem not to...
Katja Luther
01:22 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Generally values recovered by "Restore default" often seem not to be persisted but old value...
Andreas Müller
01:16 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Andreas Müller wrote:
> > Saving of "Publish Flag" does not always work. You may try differ...
Katja Luther
01:15 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Andreas Müller wrote:
> > General: When choosing "No - allow override" for all 3 entries th...
Katja Luther
01:12 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Saving of "Publish Flag" does not always work. You may try different states including allow ...
Andreas Müller
12:53 PM bug #8385: Open issues in DB preferences
Katja Luther wrote:
> Andreas Müller wrote:
> > Is there a reason why allow override is always disabled for "Enable...
Katja Luther
12:48 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> General: When choosing "No - allow override" for all 3 entries the values shown in local pre...
Andreas Müller
12:45 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Is there a reason why allow override is always disabled for "Enable Distribution Editor"?
...
Katja Luther
12:34 PM bug #8385 (Feedback): Open issues in DB preferences
Is there a reason why allow override is always disabled for "Enable Distribution Editor"? Andreas Müller
11:58 AM bug #8385 (Resolved): Open issues in DB preferences
abcd preferences are moved to a new ticket, please review the rest. Katja Luther
06:58 PM Revision 064339ce (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
06:57 PM Revision abc1d0c7 (cdm-server): updating poms for branch'release/5.9.0' with non-snapshot versions
jenkins
06:49 PM Revision 227b1bf9 (cdm-webapp): Merge branch 'release/5.9.0' into develop
jenkins
06:48 PM Revision 4afdb1a4 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
06:48 PM Revision 284c75d7 (cdm-webapp): updating poms for branch'release/5.9.0' with non-snapshot versions
jenkins
06:48 PM Revision 59697fa9 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.9.0
jenkins
06:40 PM Revision 6c55794d (cdm-vaadin): Merge branch 'release/5.9.0' into develop
jenkins
06:40 PM Revision f96f11e8 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
06:37 PM Revision 56fdc29e (cdm-vaadin): updating poms for branch'release/5.9.0' with non-snapshot versions
jenkins
06:37 PM Revision 48bf314c (cdm-vaadin): jenkins bumping cdmlib.version to 5.9.0
jenkins
06:36 PM Revision ba26d477 (taxeditor): Merge branch 'release/5.9.0' into develop
jenkins
06:36 PM Revision f002ce64 (taxeditor): Merge branch 'release/5.9.0'
jenkins
06:35 PM Revision 18a58edc (cdm-dataportal): Merge branch 'release/5.9.0' into develop
jenkins
06:35 PM Revision 1472f5e7 (cdm-dataportal): updating poms for branch'release/5.9.0' with non-snapshot ver...
jenkins
06:35 PM Revision 697769be (cdm-dataportal): release-preparation: production level css
jenkins
06:35 PM Revision 81b02ea5 (cdmlib): Updating develop poms back to pre merge state
jenkins
06:35 PM Revision 42c74407 (cdmlib): Merge branch 'master' into develop
jenkins
06:34 PM Revision 8ef7ee37 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
06:34 PM Revision 12d3d93e (cdmlib): Merge branch 'release/5.9.0'
jenkins
06:17 PM Revision 3c1d7890 (cdmlib): updating poms for branch'release/5.9.0' with non-snapshot versions
jenkins
04:19 PM Revision 0a635f6d (taxeditor): ref #8385: label issues
Katja Luther
04:16 PM Revision bff2fb0f (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.9.0-SN...
jenkins
04:16 PM Revision 4150c139 (cdm-webapp): updating poms for 5.10.0-SNAPSHOT development
jenkins
04:16 PM Revision 35a26a79 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.10.0-S...
jenkins
04:15 PM Revision ada5bbbd (cdm-server): updating poms for 5.10.0-SNAPSHOT development
jenkins
04:15 PM Revision bd4d96d0 (cdm-dataportal): updating poms for 5.10.0-SNAPSHOT development
jenkins
04:15 PM Revision 76b888e0 (taxeditor): Updated version in pom / project files to taxeditor version : 5.10...
jenkins
04:14 PM Revision a1db19cb (taxeditor): Updated version in pom / project files to taxeditor version : 5.9....
jenkins
04:14 PM Revision 07aaf958 (cdm-vaadin): jenkins bumping cdmlib.version to 5.9.0-SNAPSHOT
jenkins
04:13 PM Revision 1526db86 (cdm-vaadin): updating poms for 5.9.0 branch with snapshot versions
jenkins
04:13 PM Revision cdf24655 (cdm-vaadin): updating poms for 5.10.0-SNAPSHOT development
jenkins
04:13 PM Revision c191327f (cdm-vaadin): jenkins bumping cdmlib.version to 5.10.0-SNAPSHOT
jenkins
04:11 PM Revision d29d8048 (cdmlib): updating poms for 5.10.0-SNAPSHOT development
jenkins
04:06 PM Revision 22a5aeff (cdmlib): ref #8248 Minor fixes for session saving
Patrick Plitzner
03:40 PM feature request #8503: Create abstract base UI from RegistrationUI and use it for all UIs
> Especially it needs to be available for the distribution editor
agreed! This means it need to be done for the Di...
Andreas Kohlbecker
03:10 PM feature request #8503: Create abstract base UI from RegistrationUI and use it for all UIs
Especially it needs to be available for the distribution editor Andreas Müller
03:08 PM feature request #8503 (New): Create abstract base UI from RegistrationUI and use it for all UIs
The code which configures the error hanlder should also go into the abstract base class:
~~~java
Delegati...
Andreas Kohlbecker
03:32 PM feature request #8304: Name page redirects to according taxon depending on query parameter
the result of our call was the following:
The global switch which overrides the redirect behavior is not causing p...
Andreas Kohlbecker
03:05 PM Revision 27bf6632 (cdmlib): ref #8441 remove cascading from FeatureState.feature and .state
Andreas Müller
02:49 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
the same issue was reported once again:
Test New name entered (not saved) new Basionym, new reference or selected ...
Andreas Kohlbecker
02:36 PM Revision 75ca45ac (taxeditor): ref #8385: do not show default preference for distributionstatus
Katja Luther
02:36 PM bug #8502: taxa with doubtful flag lack proper formatting
Eckhard please can you test in http://test.e-taxonomy.eu/dataportal/preview/euromed/ if this issue is solved now? Andreas Kohlbecker
02:35 PM bug #8502 (Resolved): taxa with doubtful flag lack proper formatting
Applied in changeset commit:cdm-dataportal|61fc6c9311b1053b08ebb32085842f231edb3746. Andreas Kohlbecker
02:15 PM bug #8502 (Resolved): taxa with doubtful flag lack proper formatting
taxa with doubtful flag lack proper formatting. The dataportal uses the titleCache instead of the taggedTitle. Andreas Kohlbecker
02:35 PM Revision 61fc6c93 (cdm-dataportal): fix #8502 proper handling of tagged text for douptful taxa
Andreas Kohlbecker
02:28 PM Revision d84ac885 (taxeditor): ref #8489: fix set default for db term preferences
Katja Luther
02:12 PM Revision 1d3ab649 (taxeditor): ref #8489: local term list are set to db preference value if defau...
Katja Luther
02:06 PM Revision cb75abfb (taxeditor): ref #8385: show db preference for local term preferences if defaul...
Katja Luther
01:39 PM Revision 6f5b48f3 (taxeditor): ref #8385: setToDefault needs to setApply = true
Katja Luther
01:15 PM Revision 53d771bb (taxeditor): ref #8385: fix enabling and disabling of distribution editor pref ...
Katja Luther
01:10 PM Revision 643f70e0 (taxeditor): ref #8385: adapt local default labels to db preference
Katja Luther
12:52 PM Revision 44c33856 (taxeditor): ref #8385: fix enabling of allow override button
Katja Luther
12:50 PM Revision c4ae573c (taxeditor): ref #8385: fix NPE
Katja Luther
12:10 PM task #8501 (New): setup OWASP vulnerability checker for projects

The (jenkins plugin](https://wiki.jenkins.io/display/JENKINS/OWASP+Dependency-Check+Plugin) seems not to be worki...
Andreas Kohlbecker
11:38 AM bug #8500: DistributionStatusUI: Error while detaching UI from session
back to unassigned .... Andreas Kohlbecker
10:54 AM bug #8500 (New): DistributionStatusUI: Error while detaching UI from session

~~~
[flora-cuba] 2019-08-29 10:12:43,276 WARN [org.eclipse.jetty.server.session.HashSessionManager@5330da99Timer...
Andreas Kohlbecker
10:58 AM Revision bad6ba63 (cdmlib): avoid NPE in abcd import
Katja Luther
10:52 AM Revision 10aabbdd (cdmlib): smaller issues in Abcd import
Katja Luther
09:26 AM Revision 10a23387 (cdmlib-apps): ref #8499 committed additional parameter import for E+M
Andreas Müller
09:20 AM task #8499 (New): Decide how to handle additional parameters like refAuthorString and originalNom...
They have been additionally imported to CDM from BM, as the information may be needed in future.
For Person it has...
Andreas Müller
09:14 AM Revision f49ceeee (cdmlib-apps): cleanup
Andreas Müller
09:11 AM Revision c202fe96 (cdmlib): ref #8248 Check existing feature/state of FeatureState during import
Patrick Plitzner
09:10 AM Revision 576de855 (cdmlib): ref #8248 Adapt to new term node service
Patrick Plitzner
09:09 AM Revision f0109d06 (cdmlib-apps): ref #8479 split taxon and description import, remove auditing an...
Andreas Müller
05:14 AM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
We could still add symbols with the current state of the flag to the "Set Flags" submenu. I created a new ticket for ... Andreas Müller
05:12 AM bug #8498 (In Progress): Set Flags should show the current status of the flags
Currently when setting the flag one does not know if the flag is set before or not. Especially for doubtful this is t... Andreas Müller

08/28/2019

04:51 PM feature request #8180 (Closed): Add property term "Presence/Absence" to CDM default terms
Terms and vocabulary are available in the taxeditor and replace possible existing presence/absence terms. Patrick Plitzner
04:50 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
Patrick Plitzner
01:27 PM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
For future a real freetext search might be preferable for the states in case there are >>10 states, but for now it is... Andreas Müller
10:00 AM feature request #8475 (Resolved): Adapt applicable state detail view elements to FeatureState
Removed empty element after first selection.
All issues should be fixed now.
Patrick Plitzner
04:46 PM Revision 076d19ba (cdmlib): ref #8248 Fix import of character structure and property
Patrick Plitzner
03:45 PM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
now the allow override selection is now handled seperatly and the preference is only removed when default + allow ove... Katja Luther
10:28 AM bug #8389: Correct handling of default values with allowOverride=false
But this is what this ticket is all about.
I can't remember that we decided to delete if "default" was selected AND ...
Andreas Müller
10:12 AM bug #8389: Correct handling of default values with allowOverride=false
Andreas Müller wrote:
> Katja Luther wrote:
> > The actual implementation is that if the default value is chosen al...
Katja Luther
10:03 AM bug #8389 (Feedback): Correct handling of default values with allowOverride=false
Katja Luther wrote:
> The actual implementation is that if the default value is chosen allowOverride is set to true ...
Andreas Müller
09:58 AM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
Katja Luther
09:37 AM bug #8389: Correct handling of default values with allowOverride=false
The actual implementation is that if the default value is chosen allowOverride is set to true and the checkbox is dis... Katja Luther
03:41 PM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
the labels are moved Katja Luther
03:40 PM Revision 89683c7f (taxeditor): ref #8385: smaller label issues
Katja Luther
03:40 PM Revision 76ab205e (taxeditor): ref #8282: adapt order in navigator menu
Katja Luther
03:25 PM Revision 8849a7eb (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
03:24 PM Revision c87189a7 (cdmlib): SpecimenTypeDesignation representations for names
Katja Luther
03:09 PM bug #8496 (New): Improve public setters for entity collections
I had a problem when writing the CDM2CDM import. Here I wanted to call the setter and replace the old collection (whi... Andreas Müller
02:35 PM bug #8496 (Feedback): Improve public setters for entity collections
Does this implementation cause any real problems or is it only semantically problem?
As far as I remember the culp...
Andreas Kohlbecker
02:20 PM bug #8496 (New): Improve public setters for entity collections
These were implemented in #7600.
Unfortunately the current semantics is that e.g. AnnotatableEntity.setAnnotations...
Andreas Müller
02:54 PM Revision edf56664 (taxeditor): ref #8475 Remove empty element when single parent is selected
Patrick Plitzner
02:53 PM Revision ecc03050 (cdmlib): ref #8248 Import applicability feature states
Patrick Plitzner
02:23 PM feature request #8495 (Closed): classification tree horizontally scrolls to active entrty
done! Andreas Kohlbecker
02:16 PM feature request #8495 (Closed): classification tree horizontally scrolls to active entrty
Wenn man sich durch die Classification klickt, verschwindet ab einer gewissen Ebene das, was man eigentlich sehen wil... Andreas Kohlbecker
02:22 PM Revision dab60a9f (cdm-dataportal): ref #8495 classification tree scrolls horizontally to the act...
Andreas Kohlbecker
02:21 PM feature request #7600: public setters for entity collections
There is an open issue with the current implementation. I created a new ticket: #8496 Andreas Müller
02:13 PM task #8479 (In Progress): [PESI][FE] Cdm-2-Cdm import for FauEu
Andreas Müller
02:05 PM bug #8494 (In Progress): Better ABCD Preferences Page
to be done
see also #8489
also #8385#note-51,
#8385#note-52
~~Why does the nomenclatural code not provid...
Katja Luther
02:04 PM bug #8493: hide taxon page general tab TOC block if empty
adding work in progress as patch file: attachment:issue-8493.patch Andreas Kohlbecker
02:00 PM bug #8493 (In Progress): hide taxon page general tab TOC block if empty
I tried solving this issue and found that the table of contents is not empty. For Euro+Med the synonymy has been hidd... Andreas Kohlbecker
01:16 PM bug #8493 (In Progress): hide taxon page general tab TOC block if empty
reported by Anton:
Hallo,

da ist so ein verrutschtes “Content” (s.u.).
https://www.europlusmed.org/?q=cdm_d...
Andreas Kohlbecker
01:49 PM Revision de9fe10f (taxeditor): ref #8385: smaller label issues
Katja Luther
12:57 PM Revision 95a16223 (cdmlib): ref #6774 export feature states
Patrick Plitzner
12:36 PM Revision 79bd864f (taxeditor): ref #8389: revert disabling of allowOverride for default selection
Katja Luther
12:14 PM Revision 065f7e99 (cdmlib): ref #6794 Fix endless loop in OWL export
Patrick Plitzner
11:58 AM bug #8492: Adapt CsvNameExport to rollback only and generally review where and how it should be used
These 2 tests failed:
~~~
Tests in error:
IOServiceExportTest.exportCSVNameTest:99 ? UnexpectedRollback Trans...
Andreas Müller
11:57 AM bug #8492 (New): Adapt CsvNameExport to rollback only and generally review where and how it shoul...
To make the 2 CsvNameExport tests in TaxEditor test environment not fail, read only was set to false in CsvNameExport... Andreas Müller
11:33 AM Revision 9622040d (cdmlib): ref #6794 Add progress monitor break point
Patrick Plitzner
11:32 AM Revision fe330183 (cdmlib): ref #6794 Fix potential ClassCastException
Patrick Plitzner
11:16 AM feature request #8491 (New): show higher taxon graph in name and taxon pages optionally
Step 1: discuss the concept of showing the higher graph paths Andreas Kohlbecker
10:50 AM Revision 5087fadc (cdm-dataportal): renaming search page tab to 'Taxon graph search'
Andreas Kohlbecker
09:59 AM Revision e8617cf0 (taxeditor): ref #8475 Remove empty element after first feature selection
Patrick Plitzner
09:58 AM Revision e1dfd329 (taxeditor): ref #8389: disable allowOverride when 'use default' is selected
Katja Luther
09:52 AM Revision 5801fcdb (taxeditor): ref #8475 Update Finish button after state selection
Patrick Plitzner
09:40 AM feature request #8490 (New): Sitemap implemented
This feature has been requested since the early days of the dataportal.
A "sitemap" for the following data types i...
Andreas Kohlbecker
09:17 AM Revision cdbc4cb1 (cdmlib): adapt cdm light column names
Katja Luther
02:06 AM Revision 5e8ef6ba (cdmlib): fix NPE in setNomenclaturalSource
Andreas Müller
02:05 AM Revision dc6b9347 (cdmlib): revert JAXB issues on NamedArea
Andreas Müller
02:05 AM Revision 1d213d90 (cdmlib): cleanup
Andreas Müller

08/27/2019

01:43 AM Revision b617691e (cdmlib): remove redundant JAXB parameters from NamedArea
Andreas Müller
01:42 AM Revision 8da0b07f (cdmlib): ref #8479 add listUUIDs method
Andreas Müller
01:41 AM Revision 91c82b50 (cdmlib): cleanup
Andreas Müller
10:12 PM Revision e03ae1b2 (cdmlib-apps): ref #8479 rename taxon node import class
Andreas Müller
10:10 PM Revision e94f29fe (cdmlib-apps): ref #8479 add concurrency to configurator
Andreas Müller
10:08 PM Revision c0238c65 (cdmlib-apps): ref #8479 move cdm2cdm methods down to base class
Andreas Müller
04:49 PM Revision b440115a (cdmlib-apps): ref #8479 concurrency in FauEu2CdmImport and some other improvem...
Andreas Müller
04:36 PM Revision f1783317 (cdmlib): improved logging for TaxonNode with missing sortIndex
Andreas Müller
04:36 PM Revision d8ab86ef (cdmlib): ref #8479 propertyPaths fix for TermVocabulary
Andreas Müller
04:36 PM Revision 61f5e0eb (cdmlib): ref #8479 add concurrency, TaxonNodeOutStreamPartitionerConcurrent
Andreas Müller
04:36 PM Revision fccd79b3 (cdmlib): ref #8479 ordering for taxon nodes implemented in TaxonNodeFilter and...
Andreas Müller
04:36 PM Revision 73556d6c (cdmlib): ref #8479 propertyPaths for TaxonNodeOutStreamPartitioner and introdu...
Andreas Müller
04:36 PM Revision 676533cc (cdmlib): minor
Andreas Müller
02:44 PM Revision 531b0ee6 (taxeditor): ref #8385: fix specimen pref page
Katja Luther
12:41 PM Revision 8fecfdbd (taxeditor): ref #8385: fix general prefs and publish flag prefs page
Katja Luther
12:06 PM Revision d2a55134 (cdmlib): ref #8385: label issues
Katja Luther
12:06 PM Revision e649e0cb (taxeditor): ref #8385: label issues, search dialog prefs...
Katja Luther
09:08 AM Revision 694a5f9c (cdmlib): ref #8299: CdmLightExportTable new column
Katja Luther

08/26/2019

03:27 PM Revision c793c58b (taxeditor): ref #8385: fix namedetails view configuration and rank selection
Katja Luther
03:16 PM Revision 3d31b229 (taxeditor): ref #8385: fix nomenclatural status page
Katja Luther
02:56 PM feature request #8299: add typification column to scientific name and homotypical group in cdm light
I added two columns to homotypical group table: TypeString (for SpecimenTypeDesignations) and TypeCache (for TextualT... Katja Luther
02:55 PM Revision 423aaea9 (cdmlib): ref #8299: add TypeCache and TypeString to homotypical group table
Katja Luther
02:43 PM Revision f02e08f4 (taxeditor): ref #8385: fix general and abcd pages
Katja Luther
01:46 PM bug #8389: Correct handling of default values with allowOverride=false
Has this been fixed in 5.9 together with #8385. To me it looks like fixed but I did not test systematically.
Pleas...
Andreas Müller
01:41 PM bug #8385: Open issues in DB preferences
~~Generally values recovered by "Restore default" often seem not to be persisted but old values are kept.~~
fixed
Andreas Müller
01:36 PM bug #8385: Open issues in DB preferences
~~Saving of "Publish Flag" does not always work. You may try different states including allow override adn "Restore D... Andreas Müller
01:35 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Andreas Müller wrote:
> > General: When choosing "No - allow override" for all 3 entries th...
Andreas Müller
01:22 PM bug #8385: Open issues in DB preferences
~~Search dialog: "Search also for titlecache ..." -> "... title cache ..."~~
fixed
Andreas Müller
01:20 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> General: When choosing "No - allow override" for all 3 entries the values shown in local pre...
Andreas Müller
01:15 PM bug #8385: Open issues in DB preferences
~~Publish Flage:~~
~~"Not Publish" -> "Don't Publish"~~
~~"Use Default (InheritFromParent)" -> kein Camel Case so...
Andreas Müller
01:10 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Name details view: "Restore Defaults" does not enable "Secundum enabled" and "Secundum Refer...
Andreas Müller
01:08 PM bug #8385: Open issues in DB preferences
~~NDV: "Whole Authorship section" -> "Whole authorship section"~~ Andreas Müller
01:08 PM bug #8385: Open issues in DB preferences
~~NDV: NameCache of the name ... -> "Name cache of the name ..."~~ Andreas Müller
01:07 PM bug #8385: Open issues in DB preferences
~~NDV: "Secundum Reference Details" -> "Secundum reference details"~~ Andreas Müller
01:06 PM bug #8385: Open issues in DB preferences
~~Name details view: "Restore Defaults" does not enable "Secundum enabled" and "Secundum Reference Details"~~
fixed
Andreas Müller
01:02 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Same for ranks. They are not stored.
Hmm, maybe I made a mistake. This seems to work.
Andreas Müller
12:59 PM bug #8385: Open issues in DB preferences
~~Same for ranks. They are not stored.~~
fixed
Andreas Müller
12:58 PM bug #8385: Open issues in DB preferences
~~Nomenclatural status is not stored. Neither after reopening the pref dialog nor after restarting the TaxEditor the ... Andreas Müller
12:13 PM bug #8385: Open issues in DB preferences
~~General: When choosing "No - allow override" for all 3 entries the values shown in local preferences are "Use Defau... Andreas Müller
10:48 AM bug #8385: Open issues in DB preferences
>similar for BiocaseProvider: io.ABCD.providerList is stored with "Keine Provider verfügbar;" which seems to be incor... Andreas Müller
10:45 AM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> > Biocase Provider for associated DNA should be moved to "Biocase Provider"
> >>this is no...
Andreas Müller
10:38 AM bug #8385: Open issues in DB preferences
>io.ABCD.config is stored in DB with value NULL even if nothing has changed, if this is default value, the default sh... Andreas Müller
10:23 AM bug #8385: Open issues in DB preferences
~~ABCD: Restore defaults does not seem to set allowOverride~~ Andreas Müller
10:21 AM bug #8385: Open issues in DB preferences
Why does the nomenclatural code not provide a default? Is this wanted? Does ABCD not need a nomenclatural code? I rem... Andreas Müller
10:14 AM bug #8385: Open issues in DB preferences
> Biocase Provider for associated DNA should be moved to "Biocase Provider"
>>this is not the same because this pro...
Andreas Müller
10:00 AM bug #8385: Open issues in DB preferences
~~ABCD: Ignore Authorship ... -> Ignore authorship ...~~
fixed
Andreas Müller
09:52 AM bug #8385: Open issues in DB preferences
~~"Show rank in Distribution Editor" should be relabled -> "Show rank column"~~
this is fixed
Andreas Müller
09:05 AM bug #8385: Open issues in DB preferences
~~Name Details View: when selecting "restore defaults" allow override is not set to default~~
this is fixed
Andreas Müller
09:04 AM bug #8385 (Feedback): Open issues in DB preferences
~~Name Details View: if UseDefaults(Disable) is selected the fields are not disabled in the same way as when selectin... Andreas Müller
01:37 PM feature request #8489 (Resolved): Further issues for DB preferences
* ~~Common names vocabulary select list:~~
* ~~has no "allow override" (as not yet present in local preferenc...
Andreas Müller
01:21 PM feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
Created new ticket for adding characters to feature trees - #8488 Patrick Plitzner
01:20 PM bug #8488 (Closed): Characters can not be added to feature trees
Patrick Plitzner
08:46 AM feature request #8486 (New): Indicating doubtful state in navigator and add set-doubtful to Set-F...
Reviewed the setFlag part and set back to new for main task. Andreas Müller
08:43 AM feature request #8180 (Resolved): Add property term "Presence/Absence" to CDM default terms
Andreas Müller
08:42 AM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
A minor issue: can we have the order of the flags in the same order as in the assistent. That makes it more intuitive... Andreas Müller
08:39 AM feature request #8447 (Closed): Adapt setPublishForSubtree to new parameters for pro parte, misap...
Andreas Müller

08/25/2019

01:39 PM Revision 7e398530 (cdmlib-apps): ref #8479 fix duplicate source repo creation
Andreas Müller
01:38 PM Revision 712e980f (cdmlib-apps): cleanup
Andreas Müller
01:37 PM Revision e3159da6 (cdmlib-apps): ref #8479 manual last commit for FauEu cdm2cdm import
Andreas Müller
01:35 PM Revision b71e7a9e (cdmlib): ref #8479 allow manual last commit for TaxonNodeOutStreamPartitioner
Andreas Müller

08/23/2019

12:44 AM Revision 42134444 (cdmlib): allow TaxonNodeOutStreamPartitioner to be readOnly = false and use in...
Andreas Müller
12:43 AM Revision 774b85df (cdmlib): cleanup
Andreas Müller
11:56 PM Revision e899bbdf (taxeditor): adapt rollback to new name
Andreas Müller
11:55 PM Revision 80b81212 (cdmlib): remove setRollbackOnly to test if this causes exception in TaxEditor ...
Andreas Müller
11:54 PM Revision 29421c03 (cdmlib): rename rollback method
Andreas Müller
11:53 PM Revision 063973ca (cdmlib): cleanup
Andreas Müller
11:44 PM Revision 8da3d0db (taxeditor): fix compile error due to new rollback method
Andreas Müller
11:10 PM Revision def8dda3 (cdmlib-apps): cleanup TaxonExcelCaryophyllalesActivator
Andreas Müller
11:10 PM Revision 5815f954 (cdmlib-apps): ref #8479 FauEu Cdm2Cdm import more or less running but still slow
Andreas Müller
11:09 PM Revision 9718c259 (cdmlib-apps): minor
Andreas Müller
11:07 PM Revision 52b594a2 (cdmlib): add rollback to ICdmRepository and use in TaxonNodeOutStreamPartitioner
Andreas Müller
11:06 PM Revision d0390c50 (cdmlib): cleanup
Andreas Müller
06:20 PM Revision 48a40f35 (taxeditor): ref #8475 Use feature selection dialog in feature state wizard
Patrick Plitzner
04:39 PM Revision 26d39860 (cdmlib): cleanup
Andreas Müller
04:12 PM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > In this case we do not need an "empty" choice for the dropdowns...
Andreas Müller
02:59 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
Andreas Müller wrote:
> In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs...
Patrick Plitzner
10:07 AM feature request #8475: Adapt applicable state detail view elements to FeatureState
In general this ticket can be closed as it works as expected. Andreas Müller
10:06 AM feature request #8475: Adapt applicable state detail view elements to FeatureState
I wonder if we could reduce the availability of "InapplicableIf" and "OnlyApplicableIF" to term nodes of term type "... Andreas Müller
10:02 AM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs to have both, feature an... Andreas Müller
04:01 PM feature request #8486: Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
Can you add the changes to the ticket or is this not yet pushed? Andreas Müller
04:00 PM feature request #8486 (Resolved): Indicating doubtful state in navigator and add set-doubtful to ...
I preliminary give this to me to not forgot reviewing the next function. Disabling already is a good solution though ... Andreas Müller
09:54 AM feature request #8486 (Closed): Indicating doubtful state in navigator and add set-doubtful to Se...
Indicate the doubtful state in the taxon navigator somehow. E.g. by symbol "?" that we normally use for doubtful info... Katja Luther
03:49 PM Revision 11f52a90 (taxeditor): ref #8475 Remove not needed super method
Patrick Plitzner
03:34 PM feature request #8282: Implement placementDoubtful in TaxEditor
the setDoubtful menu item is now implemented for the navigator, but it was not possible to set the menu to invisible ... Katja Luther
01:45 PM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
Andreas Müller
12:24 PM feature request #8282: Implement placementDoubtful in TaxEditor
ok Andreas Müller
11:37 AM feature request #8282: Implement placementDoubtful in TaxEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > Also we should add the doubtful flag to the "Set flags" method in...
Katja Luther
11:35 AM feature request #8282: Implement placementDoubtful in TaxEditor
Katja Luther wrote:
> the checkbox is moved below the publish checkbox.
works as expected. Ticket can be closed o...
Andreas Müller
11:34 AM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
Andreas Müller wrote:
> Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right ...
Andreas Müller
09:52 AM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
the checkbox is moved below the publish checkbox. Katja Luther
09:51 AM feature request #8282: Implement placementDoubtful in TaxEditor
Andreas Müller wrote:
> The new field should be close to the taxon node information as it is from taxon node. Curren...
Katja Luther
03:29 PM Revision e9eec17d (taxeditor): Restructure ui.combo package
Patrick Plitzner
03:25 PM Revision 43ed2498 (taxeditor): ref #8282: add setDoubtful to setFlag menu in navigator
Katja Luther
03:20 PM Revision d3ca3e94 (taxeditor): ref #8479 fix removeTaxonAgentRelation in TaxEditor
Andreas Müller
03:16 PM bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.in...
The more sophisticated way is to adapt the underlying method to return an EnumSet, not an ordinary Set. With EnumSet ... Andreas Müller
01:12 PM bug #8482 (Feedback): java.lang.IllegalArgumentException: Collection is empty in DescriptionType....
The problems obviously is fixed and the implementation looks good. Why did you comment the commit with "workaround"? ... Andreas Kohlbecker
03:11 PM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
Andreas Müller wrote:
> Generally it works and can be closed.
>
> Open issue (new ticket?) is that Characters can...
Andreas Müller
12:06 PM feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
Adjusted the context menu entries. Closing ticket. Patrick Plitzner
09:50 AM feature request #8235: Create separate menu for term tree editors for each term tree type
Generally it works and can be closed.
Open issue (new ticket?) is that Characters can not be added to Featuretrees...
Andreas Müller
09:49 AM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
Andreas Müller wrote:
> "New" and "Delete" is enough, we do not need "... Term Tree"
This seems not yet implement...
Andreas Müller
02:57 PM Revision 570b874c (taxeditor): ref #8475 Only enable details view for feature and character term ...
Patrick Plitzner
02:51 PM Revision b3fbf38e (cdmlib): ref #8180 ... and again try to fix the test data
Andreas Müller
02:37 PM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, mis...
Andreas Müller wrote:
> Andreas Müller wrote:
> > Hybrids are not a set of independent taxa but more a filter on ea...
Katja Luther
11:38 AM feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, mis...
Andreas Müller wrote:
> Hybrids are not a set of independent taxa but more a filter on each group. So we should mayb...
Andreas Müller
09:44 AM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, mis...
moving synonyms and hybrids is done. Katja Luther
09:42 AM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplication...
Andreas Müller wrote:
> "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't kn...
Katja Luther
02:36 PM Revision 0c676821 (taxeditor): ref #8447: disable finish if nothing is selected and hybrids disab...
Katja Luther
02:35 PM Revision 0a788123 (cdmlib): ref #8180 ... and update test data in other projects
Andreas Müller
02:25 PM Revision 03335762 (cdmlib): ref #8180 fix incorrect UUID in test data
Andreas Müller
02:08 PM Revision 57ab1b79 (cdmlib): ref #7600 add explict adders for adder and remover methods to EntityC...
Andreas Müller
02:08 PM Revision b781b5d5 (cdmlib): minor
Andreas Müller
02:08 PM Revision ed29b851 (cdmlib): ref #8479 make TaxonNode.addAgentRelation public and adapt remove met...
Andreas Müller
02:08 PM Revision 8b10ca03 (cdmlib): adapt CdmLightClassificationExport to hasXXX methods
Andreas Müller
02:08 PM Revision 749e8fb4 (cdmlib): ref #8180 Add vocabulary to test data
Andreas Müller
01:06 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermT...
my implementation now is generic.
> Also it might be nice to have a little test that it works. Have you tested in ...
Andreas Kohlbecker
10:28 AM task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermT...
Andreas Kohlbecker wrote:
> Agreed ... and implemented in the way you pointed out.
The current implementation is ...
Andreas Müller
10:21 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
To me it looks like commit 1a5b2194 is not related to *this* ticket. Can you please check? Andreas Müller
12:59 PM Revision acdfa184 (cdmlib): ref #8437 using TermType.getGeneralizationOf() to expand the termType...
Andreas Kohlbecker
12:44 PM Revision 6d8c9ff0 (cdmlib): add doubtful flag to TaxonNodeDto
Katja Luther
12:30 PM Revision aa312f10 (taxeditor): ref #8475 Enhance FeatureStateWizard
- Pre-select single parent feature if exists
- filter out features without supported categorical states
Patrick Plitzner
12:07 PM task #8406 (Closed): specimens and occurrence code cleaning and harmonization
dead code removed.
I think we can close this issue now since all open tasks have been copied to other tickets.
Andreas Kohlbecker
09:04 AM task #8406: specimens and occurrence code cleaning and harmonization
Andreas Kohlbecker wrote:
> thank you for fixing this.
>
> there are two commented code parts in this method:
> ...
Katja Luther
12:05 PM Revision c1639218 (cdm-dataportal): ref #8406 removing commented dead code
Andreas Kohlbecker
12:04 PM Revision 0d40526c (taxeditor): remove debug message
Patrick Plitzner
12:04 PM Revision 38f0da6e (taxeditor): ref #8235 adjust context menu items
Patrick Plitzner
11:21 AM Revision 47ca6691 (cdmlib): cleanup
Andreas Müller
11:18 AM Revision 2c2b731a (cdmlib): fix clone method for User
Andreas Müller
11:17 AM Revision b0a48ddf (cdmlib): ref #8180 Add Presence state vocabulary to default terms
Andreas Müller
11:08 AM Revision 04eabef3 (cdmlib): ref #8479 add hasXXX methods to TaxonNodeFilter
Andreas Müller
11:07 AM Revision e68bc8fa (cdmlib): ref #8479 make TaxonNodeOutStreamPartitioner read only by default.
Andreas Müller
10:34 AM feature request #7450 (Closed): Allow setPublish for subtree to include misapplied names and pro ...
Moved better reporting to new ticket #8487 and close *this* ticket. Andreas Müller
10:33 AM feature request #8487 (New): Report results of set publish
It should include numbers per each group (taxa, synonyms, MAN, ...)
Also those MAN, ppSyns, shared taxa, which wer...
Andreas Müller
10:09 AM bug #8481 (Rejected): NPE when opening feature tree
I agree. Had a look to the data and for some reason the term with the given id really doesn't exist anymore. Don't kn... Andreas Müller
09:55 AM feature request #8470: Handle username constraints in user and group editing
I will implement this for the next release. Katja Luther
09:51 AM Revision b850c728 (taxeditor): ref #8282: move doubtful checkbox below publish checkbox
Katja Luther
09:50 AM Revision aee8ed69 (taxeditor): ref #8447: move hybrids and synonyms
Katja Luther
09:40 AM Revision 245bd5bc (taxeditor): ref #8447: only misapplied names or pro parte syn should work as well
Katja Luther
09:31 AM Revision 962e47b4 (taxeditor): ref #3472: adapt labels for operation
Katja Luther
09:31 AM feature request #3472 (Closed): Update name in source data when changing an accepted taxon into a...
the new ticket is #8478 and the labels are adapted. Katja Luther

08/22/2019

04:10 PM Revision c2b34f0b (taxeditor): Do not show admin menu when not logged in
Patrick Plitzner
04:10 PM Revision a9abb9b0 (taxeditor): Fix "General" missing menu items
Patrick Plitzner
12:05 PM Revision 0c64a24d (taxeditor): Hide terms menu when not connected
Patrick Plitzner
11:34 AM Revision 7f9d6ac4 (cdm-vaadin): removing vaading testbench test
Andreas Kohlbecker
11:33 AM Revision c4ce17b3 (cdm-vaadin): removing runtime artifact
Andreas Kohlbecker

08/21/2019

04:12 PM bug #8481 (Feedback): NPE when opening feature tree
Looking at the stacktrace this seem like corrupted data as the exception happen during TermRelationBase.getTerm().
...
Patrick Plitzner
04:10 PM feature request #8485 (Closed): Add column groups to character matrix
Does not have to be reviewed because still experimental Patrick Plitzner
04:09 PM feature request #8485 (Resolved): Add column groups to character matrix
Applied in changeset commit:taxeditor|c264cd9262db5bb03b83d94858c559cc985b8bc2. Patrick Plitzner
03:09 PM feature request #8485 (Closed): Add column groups to character matrix
Groups should reflect the hierarchy of the character tree. Patrick Plitzner
04:10 PM feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
Patrick Plitzner
04:09 PM Revision 422fbab5 (taxeditor): ref #8235 Fix term tree sub menu and context menu
Patrick Plitzner
04:09 PM Revision c264cd92 (taxeditor): fix #8485 Add column groups to character matrix
Patrick Plitzner
04:09 PM Revision c9332db4 (taxeditor): Move util method to StoreUtil
Patrick Plitzner
12:29 PM bug #8484 (New): Exception is swallowed in taxon navigator
In a corrupt database with taxon nodes without classification I got the following exception in the log file.
However...
Andreas Müller
11:49 AM task #8483 (New): Return EnumSets in EnumeratedTermVoc.getGeneralizationOf and similar methods
This may prevent from errors like in #8482 Andreas Müller
11:46 AM bug #8482 (Resolved): java.lang.IllegalArgumentException: Collection is empty in DescriptionType....
Applied in changeset commit:cdmlib|244c62c6bee1863dfe79d71e0ecae7bdeb4d06b5. Andreas Müller
11:18 AM bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.in...
Can be reproduced by:
http://int.e-taxonomy.eu/cdmserver/integration_palmae/portal/taxon/ce870eca-0422-4a3c-b849-0...
Andreas Kohlbecker
11:46 AM Revision 244c62c6 (cdmlib): fix #8482 workaround fix for DescriptionType includes error
Andreas Müller
11:46 AM Revision 59b19202 (cdmlib): minor
Andreas Müller
11:09 AM bug #8385 (Resolved): Open issues in DB preferences
please review Katja Luther
09:51 AM Revision 4a3a3258 (taxeditor): add higher taxon to search options for specimen - taxeditor
Katja Luther
09:49 AM Revision 319a163b (cdmlib): add higher Taxon search option to specimen search
Katja Luther
09:17 AM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from s...
Hallo Andreas,

danke für deine Einschätzung. Da du mich in meiner Auffassung bestätigst, werde ich das "is accept...
Andreas Kohlbecker
09:17 AM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from s...
Hallo Andreas,

das war mir völlig unbekannt, dass wir sowas überhaupt haben/hatten. Daher hatte ich das ganze...
Andreas Kohlbecker

08/20/2019

12:52 PM Revision 7dc115d1 (taxeditor): adapt display of multiple status in distr editor to preference value
Katja Luther
11:51 AM bug #8481: NPE when opening feature tree
I get the same exception when trying to add an InapplicableIf to "Test Feature Tree" -> Citation -> Leaf color -> Ana... Andreas Müller
11:47 AM bug #8481 (Rejected): NPE when opening feature tree
When opening feature tree "Testdasdfa" on rem_conf_am I got
~~~
login : admin
editor version : 5.9.0.20190819225...
Andreas Müller
11:45 AM feature request #8235: Create separate menu for term tree editors for each term tree type
"New" and "Delete" is enough, we do not need "... Term Tree" Andreas Müller
11:43 AM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
Feature Tree Editors still have "New Structure Tree" and "New Property Tree" submenu.
Each Term type should have its...
Andreas Müller
11:04 AM Revision 49078739 (taxeditor): minor in l10n
Katja Luther

08/19/2019

04:58 PM bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
I would rather close this tickets because it was created only to handle the bug. All other issues will be adressed in... Patrick Plitzner
04:55 PM Revision 3250b022 (taxeditor): extract string constant
Patrick Plitzner
04:55 PM feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
Applied in changeset commit:taxeditor|362b3a0c58e4b2b8620477ce38a80e2a3553bd36. Patrick Plitzner
04:54 PM Revision 362b3a0c (taxeditor): fix #8235 Create separate menu for term tree editors for each type
Patrick Plitzner
04:48 PM Revision 128dc8b1 (cdmlib-apps): syntax for collective species uuid and some other PESITransforme...
Andreas Müller
04:47 PM Revision bb184a5d (cdmlib): syntax for collective species uuid
Andreas Müller
04:22 PM Revision a85f12b2 (cdmlib): minor
Andreas Müller
04:21 PM Revision 69f5b141 (cdmlib): some minor adaptations to CdmLightExport and CsvNameExport
Andreas Müller
04:21 PM Revision e1aea500 (cdmlib): minor
Andreas Müller
04:15 PM feature request #8480 (Closed): Use DescriptionTypes for matrix descriptions
Patrick Plitzner
04:14 PM feature request #8480 (Resolved): Use DescriptionTypes for matrix descriptions
Applied in changeset commit:cdmlib|0b616910ec8af247ee13843c5058b22ac24efff0. Patrick Plitzner
04:11 PM feature request #8480 (Closed): Use DescriptionTypes for matrix descriptions
Patrick Plitzner
04:15 PM feature request #7957 (Closed): Add types for taxon description (as EnumSet)
Adapted descriptive data set service to use DescriptionType. Tried aggregation and tested display in matrix editor. A... Patrick Plitzner
04:15 PM Revision 491e4eea (cdmlib-apps): ref #8404 add steplist to BgbmInstancesUpdater code
Andreas Müller
04:13 PM Revision ef8f40dd (taxeditor): fix #8480 Use DescriptionTypes for matrix descriptions
Patrick Plitzner
04:13 PM Revision 0b616910 (cdmlib): fix #8480 Use DescriptionTypes in descriptive data set service
Patrick Plitzner
04:12 PM Revision f2f47cbd (cdmlib-apps): ref #8479 First version of cdm2cdm import for FauEu (classes cre...
Andreas Müller
04:11 PM task #8479 (In Progress): [PESI][FE] Cdm-2-Cdm import for FauEu
Open issues:
* check if uuids are always kept for taxon nodes (sometimes addChild is used which probably creats co...
Andreas Müller
04:09 PM Revision 9d685c8f (cdmlib-apps): ref 5448 latest changes to Geaessplanzenimport Excel
Andreas Müller
04:06 PM Revision c525794f (cdmlib-apps): fix to BerlinModelAreaImport. Not sure why this is needed only now
Andreas Müller
04:06 PM Revision 220dce9c (cdmlib-apps): last adaptation to E+M import (not needed anymore)
Andreas Müller
04:05 PM Revision ff763abe (cdmlib-apps): latest version of GreeceImageActivator
Andreas Müller
04:04 PM Revision bff0daf9 (cdmlib-apps): fix some compile errors in ERMS and FauEu
Andreas Müller
04:03 PM Revision 07de96ff (cdmlib-apps): minor
Andreas Müller
03:21 PM feature request #8475: Adapt applicable state detail view elements to FeatureState
Added applicable detail elements to TermNode details view. Available features are filtered to only contain parent fea... Patrick Plitzner
03:19 PM feature request #8475 (Resolved): Adapt applicable state detail view elements to FeatureState
Patrick Plitzner
03:18 PM Revision e9af789c (taxeditor): ref #8475 Filter available feature to only parent features
Patrick Plitzner
02:37 PM bug #8417: LazyInitializationException in TermDTO for media
not important for this release -> move to 5.10 Patrick Plitzner
02:33 PM feature request #8478 (New): Follow up ticket for update empty name in source handling in TaxEditor
We need a final implementation with a new wizard including the question if the name in sources should be taken from t... Katja Luther
02:30 PM Revision 719ac7ab (taxeditor): ref #8475 Add applicability detail element to character details view
Patrick Plitzner
02:27 PM Revision dc1780ec (taxeditor): ref #8385: fix nomenclatural code preference page - continue
Katja Luther
01:27 PM feature request #8304: Name page redirects to according taxon depending on query parameter
Hi Andreas, I think we have discussed this issue sometime at phone. Do you remember the results? Are they somewhere i... Andreas Müller
01:06 PM Revision c9bb625e (taxeditor): ref #8385: fix nomenclatural code preference page
Katja Luther
01:06 PM Revision dea4cffc (taxeditor): ref #8385: add allowOverride to AbcdProvider PreferencePage
Katja Luther
12:33 PM Revision de4de718 (cdmlib-apps): ref #6794 , ref #7099 adapt E+M activator to terms package stru...
Andreas Müller
10:54 AM Revision 22be3a02 (taxeditor): Update nebula composite table
Patrick Plitzner
10:16 AM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
Ok, in generall this probably makes sense. Maybe I just wasn't used to it yet.
However, if this is the expected beha...
Andreas Müller
09:40 AM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
Andreas Müller wrote:
> Currently both methods do end in an unexpected state. After running the operation the old ta...
Katja Luther
09:53 AM Revision f9af366e (taxeditor): ref #8385: smaller changes in preferences
Katja Luther
09:51 AM Revision 8437c047 (cdmlib): add preference predicates
Katja Luther
09:42 AM Revision 041937b4 (taxeditor): ref #8385: fix problems in preferences
Katja Luther

08/17/2019

02:10 AM Revision 54627755 (cdmlib-apps): remove RoteListeDbTaxonImportValidator
Andreas Müller
02:10 AM Revision 165e1209 (cdmlib-apps): ref #6794 , ref #7099 adapt app-import, pesi, eflora to modelch...
Andreas Müller

08/16/2019

01:02 AM Revision b5de83c2 (cdmlib): ref #8432 adapt javadoc
Andreas Müller
12:57 AM Revision 08f5d256 (cdmlib): ref #8432 adapt TermTreeDaoImpl.load such that default feature tree i...
Andreas Müller
12:54 AM Revision 55e16d38 (cdmlib): minor
Andreas Müller
10:36 PM bug #8385: Open issues in DB preferences
~~Restore button does not yet work for Distribution Editor status and area selection preferences~~
this is fixed
Andreas Müller
10:33 PM bug #8385: Open issues in DB preferences
~~Distribution editor status selection: changes are not visible in Preferences view after reopening the preferences v... Andreas Müller
10:27 PM bug #8385: Open issues in DB preferences
~~name.nomenclaturalStatus can not be removed by Reset Default~~
this is fixed.
Andreas Müller
10:25 PM bug #8385: Open issues in DB preferences
~~some preferences are not deleted for NameDetailsView => deselect all and reopen preferences => 3 prefs stay selecte... Andreas Müller
10:21 PM bug #8385: Open issues in DB preferences
~~ABCD import is now implemented on both sides, but "allow override" does not yet exist for "ABCD import provider"~~
...
Andreas Müller
10:19 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> When opening Peferences - Distribution Editor for the first time the drop downs for some fie...
Andreas Müller
10:12 PM bug #8385: Open issues in DB preferences
>Name details view can not be set to "default" (always chooses enabled after reopening)
~~Now it always sets it ba...
Andreas Müller
10:09 PM bug #8385 (Feedback): Open issues in DB preferences
~~When opening Peferences - Distribution Editor for the first time the drop downs for some fields were completely emp... Andreas Müller
09:55 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
Andreas Müller wrote:
> Please open a new ticket for the final implementation with a new wizard including the questi...
Andreas Müller
09:51 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
The labels of the 2 menus should be equal except for the addition about the Name in Source. Is there a reason why you... Andreas Müller
09:44 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
Please open a new ticket for the final implementation with a new wizard including the question if the name in sources... Andreas Müller
09:38 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
The method with setting the name should be moved down in menu Andreas Müller
09:37 PM feature request #3472 (Feedback): Update name in source data when changing an accepted taxon into...
Currently both methods do end in an unexpected state. After running the operation the old taxon is dirty (and unsaved... Andreas Müller
09:40 AM feature request #3472 (Resolved): Update name in source data when changing an accepted taxon into...
this is implemented now.
The setting of the name in source is configurable, but in editor a new wizard would be ne...
Katja Luther
09:24 PM bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
I close this ticket as there is a follow up ticket. Andreas Müller
09:22 PM feature request #8299 (Feedback): add typification column to scientific name and homotypical grou...
Testing is time consuming for me. Please ask Walter if it is as expected. Andreas Müller
09:20 PM feature request #8334 (Closed): Move sources for type designations to details view
Andreas Müller
09:17 PM bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
Hmm, now the warning is also shown if the misapplication is referenced e.g. by an identification key which is not nec... Andreas Müller
09:05 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplication...
"Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't know if it is maybe better ... Andreas Müller
09:01 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplication...
I think we may move synonyms below taxa as they are the second biggest group. Misapplications and pro parte synonyms ... Andreas Müller
08:59 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplication...
Hybrids are not a set of independent taxa but more a filter on each group. So we should maybe move it down (directly ... Andreas Müller
08:57 PM feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, mis...
If only Misapplications and/or pro parte synonyms are selected the finish button is not enabled but should (at least ... Andreas Müller
08:43 PM feature request #8282: Implement placementDoubtful in TaxEditor
Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right click menu. Andreas Müller
12:24 PM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
The new field should be close to the taxon node information as it is from taxon node. Currently it is in the middle o... Andreas Müller
08:03 PM Revision 96b27743 (cdmlib): ref #7957 add javadoc to description types
Andreas Müller
07:00 PM Revision 7e477034 (cdmlib): ref #8441 add tests for FeatureState loading and move some test data ...
Andreas Müller
06:27 PM Revision 73ef4c0b (cdmlib): ref #8441 fix mapping for FeatureState
Andreas Müller
05:29 PM Revision cf3d9f76 (taxeditor): ref #8475 Create FeatureState in wizard dialog
Patrick Plitzner
04:33 PM Revision b02697a5 (cdmlib): minor
Andreas Müller
04:32 PM Revision 887eb4d0 (cdmlib): move term node DAOs to term package
Andreas Müller
03:35 PM Revision c34a11ca (taxeditor): ref #7957 adapt tests to DescriptionBase.types not null
Andreas Müller
03:33 PM Revision 06a2de9b (taxeditor): cleanup
Andreas Müller
03:22 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
Since #6794 it is possible to distinguish term collections which include duplicates (e.g. structure trees which inclu... Andreas Müller
03:09 PM feature request #8476 (In Progress): Implement support for TermCollection.isFlat in TaxEditor
Often term collections are meant to be a flat list or set without hierarchical dependencies. For these collections th... Andreas Müller
03:09 PM Revision 593915d2 (taxeditor): ref #8475 First (unstable) implementation of FeatureState details
Patrick Plitzner
03:08 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
Patrick Plitzner
02:58 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
In general the ordering seems to work now. Andreas Müller
02:56 PM bug #8465 (Feedback): Term nodes order in term trees is ignored in term tree editor
As Term nodes should be not always ordered anymore (TermCollection.orderRelevant flag) we could implement this alread... Andreas Müller
02:45 PM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees

Dazu müsste es:
1. ~~editierbar sein~~
2. Der TermTree müsste unterschiedlich sortiert angezeigt werden, je nac...
Andreas Müller
01:22 PM Revision c1662123 (taxeditor): ref #8385: adapt preference keys to preference predicates
Katja Luther
01:22 PM bug #8473 (New): Migrate from GrantedAuthoritiesImpl to CdmAuthority and Role
First of all the handling of authorities needs to be migrated and tested to AuthorityBase (by AK). Once this is done ... Andreas Müller
01:14 PM bug #4884 (Closed): Update Reference_AUD.refType to allow NULL
I guess this works. Andreas Müller
12:49 PM Revision 94c6459b (taxeditor): fix search dialog default handling
Katja Luther
12:41 PM feature request #8472 (Closed): Transmission engine for distribution aggregation needs to be adap...
Currently it uses marker type "Computed" to mark the descriptions.
... also needs update script for existing descr...
Andreas Müller
12:38 PM feature request #7957: Add types for taxon description (as EnumSet)
This has been implemented now as an EnumSet for better performance.
Please review.
Andreas Müller
10:38 AM feature request #7957 (Resolved): Add types for taxon description (as EnumSet)
Applied in changeset commit:cdmlib|1962891319edeb12380aa69994467f674a96ce96. Andreas Müller
12:35 PM feature request #8471 (New): Computed descriptions should be disabled in TaxEditor
Taxon descriptions being computed (DescriptionBase.types contains COMPUTED or AGGREGATED) should be disabled for edit... Andreas Müller
12:16 PM feature request #8398: Add nomenclatural code edition to ruleConsidered
As this was your (phycobank) requirement I give it to you for review. Andreas Müller
12:15 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Maybe we can do this in 5.10 latest so it is close to the model change.
I think we should add it to configuration ...
Andreas Müller
12:14 PM Revision 0ae3531b (taxeditor): minor
Katja Luther
12:14 PM Revision a60ccec4 (taxeditor): ref #8385: enable apply button when provider added or removed from...
Katja Luther
12:14 PM Revision f9840e06 (taxeditor): ref #8385: correct preference handling for provider list
Katja Luther
12:12 PM feature request #8404 (Closed): Add update step list within updaters
Seems to work as expected and is very nice. Andreas Müller
12:11 PM feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
So I close this ticket. Andreas Müller
12:10 PM feature request #8454: Only allow certain patterns as username and groupname
This should be fixed. Who ever wants please review. I tested creating a new user and a group in TaxEditor. For both w... Andreas Müller
12:04 PM feature request #8470 (Closed): Handle username constraints in user and group editing
Since #8454 a regex exist for usernames and groupnames.
For new usernames and groups the TaxEditor should validat...
Andreas Müller
11:47 AM feature request #8441: Add FeatureState class
Please review.
Maybe there are issues with orphan removal handling.
Andreas Müller
11:45 AM feature request #8441 (Resolved): Add FeatureState class
This is implemented, old implementation still exists in parallel. Should be removed with next update script.
SDD I...
Andreas Müller
11:41 AM feature request #8469 (In Progress): Open PolytomousKeyGenerator issues
* ~~adapt dependency handling to new FeatureState handling~~
* in general improve the handling of dependencies, mayb...
Andreas Müller
11:35 AM task #8468 (Closed): Remove old InapplicableIf tables
Andreas Müller
11:03 AM Revision 525deb12 (taxeditor): adapt test H2 to schema v5.8.2
Andreas Müller
11:02 AM Revision 34062138 (cdmlib): ref #7959 rename DescriptionState -> DescriptionType and fix bug for ...
Andreas Müller
10:48 AM Revision f922cb22 (cdmlib): adapt cached model to 5.8.2
Andreas Müller
10:43 AM Revision 7134ca41 (cdm-vaadin): adapt test H2 to schema v5.8.2
Andreas Müller
10:42 AM Revision f81da2cc (cdm-vaadin): minor
Andreas Müller
10:38 AM Revision eeafa6f5 (cdmlib): for the moment set TermCollection.orderRelevant default to true
Andreas Müller
10:36 AM Revision beb18173 (cdmlib): adapt TestModelUpdate to run for all 3 H2 DBs
Andreas Müller
10:34 AM Revision a0d6f613 (cdmlib): adapt test H2 to model changes v5.8.2
Andreas Müller
10:34 AM Revision 9276e073 (cdmlib): ref #7957 add not null to update script for DescriptionBase.types
Andreas Müller
10:15 AM Revision a3d196bc (taxeditor): fix test for swapAcceptedwithSynonym
Katja Luther
10:14 AM Revision 3ff169c5 (taxeditor): fix test for swapAcceptedwithSynonym
Katja Luther
10:10 AM Revision b1d5cef3 (cdmlib): Cleanup
Andreas Müller
10:10 AM Revision 20ffe9b7 (cdmlib): ref #7099 , ref #8464 some adaptions on constraints for CdmAuthority
Andreas Müller
10:10 AM Revision 19628913 (cdmlib): fix #7957 add types to DescriptionBase
Andreas Müller
10:10 AM Revision 49405267 (cdmlib): Use AccessType Field for Character class
Andreas Müller
10:10 AM Revision ec5f2748 (cdmlib): ref #8441 adapt testdata and SDDDocumentBuilder to FeatureState
Andreas Müller
10:10 AM Revision ddda469d (cdmlib): minor
Andreas Müller
10:10 AM Revision abe8cce6 (cdmlib): ref #8441 further implementation for FeatureState and inapplicableIf
Andreas Müller
10:10 AM Revision 4e36de56 (cdmlib): ref #8441 FeatureState classes added and TermNode adapted
Andreas Müller
10:00 AM Revision 73a78654 (cdmlib): ref #8467 add commented code
- un-comment when cloned descriptions can be added to taxon
descriptions as sources
Patrick Plitzner
09:37 AM Revision 682f52a4 (taxeditor): ref #3472: adapt editor to changes in methods moving descriptions
Katja Luther
09:01 AM Revision fe8fa9b2 (cdmlib): ref #3472: fix set name in source
Katja Luther

08/15/2019

04:09 PM feature request #7597 (Closed): Aggregate and persist descriptions on taxon level
Closing this feature. No review needed as this is still experimental. Follow up ticket #8467 Patrick Plitzner
04:08 PM feature request #8467 (Resolved): Save a "snapshot" of the SpecimenDescriptions used for aggregation
When aggregating SpecimenDescriptions to a TaxonDescriptions the SDs used should be cloned and associated as sources ... Patrick Plitzner
03:57 PM feature request #8464: Make AuthorityBases unique
This seems to be more difficult then I thought.
In general hibernate allows the ,uniqueConstraints=@UniqueConstra...
Andreas Müller
02:59 PM feature request #8441 (In Progress): Add FeatureState class
Andreas Müller
02:21 PM bug #8465 (Resolved): Term nodes order in term trees is ignored in term tree editor
Applied in changeset commit:taxeditor|74a9e9d7da34b3e2d6a895a7b091364125c6f648. Patrick Plitzner
12:19 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
So, if the flag is switched on, the tree should be ordered by tree order, otherwise alphabetically (or by any other c... Andreas Müller
12:06 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
Note: The new TermCollection base class has a flag now called "orderRelevant". This should in future decide if the or... Andreas Müller
10:32 AM bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
ich hatte gerade einen neuen Feature Term "Chemophenetics" für den Cichorieae Feature Tree geschaffen , den wollte ic... Patrick Plitzner
02:21 PM Revision 74a9e9d7 (taxeditor): fix #8465 Do not sort term nodes with term tree comparator
Patrick Plitzner
01:57 PM Revision 743a64ea (cdmlib): ref #3472: make setting of name in source configurable
Katja Luther
01:52 PM task #8466 (Closed): Delete FeatureTree tables
FeatureTree has been moved to TermCollection. The old tables have not yet been deleted to have the chance to find pos... Andreas Müller
12:39 PM feature request #8442: Add fields to handle external terms to DefinedTermBase or TermBase
Andreas Müller wrote:
> This should be fixed. Also added new field "importMethod" and extracted all data to an exter...
Patrick Plitzner
10:41 AM Revision 6c4f05ea (cdmlib): ref #3472: add nameInSource in makeTaxonNodeSynonym
Katja Luther
10:34 AM Revision d1d76c46 (cdmlib): ref #3472: swap Synonym and accTaxon should move all taxon informatio...
Katja Luther
10:24 AM Revision 56d0ef92 (cdmlib): add add unitGUID to abcd import
Katja Luther
10:22 AM Revision f5050d21 (cdmlib): update caches prgress monitor with name
Katja Luther
10:20 AM Revision af1131f2 (cdmlib): ref #8385: add method to get voc by uuid
Katja Luther
10:17 AM Revision 905236e8 (taxeditor): ref #8385: adapt strucutre of db prefs to local prefs
Katja Luther
09:50 AM Revision fddfd97b (taxeditor): missing l10n files
Katja Luther
09:39 AM Revision 0c8bd397 (taxeditor): ref #8447: add man and pp to setPublish configurator wizard
Katja Luther
09:39 AM Revision da38bb5e (taxeditor): multiline text fiedl for reference title
Katja Luther
09:39 AM Revision c03d27b9 (taxeditor): ref #8447: move shared taxa and disable if not needed
Katja Luther
09:15 AM feature request #8334 (Resolved): Move sources for type designations to details view
Patrick Plitzner

08/14/2019

11:45 AM feature request #7957 (In Progress): Add types for taxon description (as EnumSet)
Patrick Plitzner
11:04 AM Revision 9f84cafb (cdmlib): Adapt uniqueness and notNull for some authority parameters
Andreas Müller
10:59 AM bug #7099: Make CdmAuthority a persistable class
forgot to implement uniqueness. Moved to #8464 Andreas Müller
10:41 AM bug #7099 (Resolved): Make CdmAuthority a persistable class
This is implemented for now. Old GrantedAuthorities still exist and are in use but we could easily switch to new ones... Andreas Müller
10:56 AM feature request #8464 (New): Make AuthorityBases unique
The old GrantedAuthorityImpl.authority was unique and NotNull. This was forgotten to implement when implementing CdmA... Andreas Müller
10:51 AM feature request #8442 (Resolved): Add fields to handle external terms to DefinedTermBase or TermBase
This should be fixed. Also added new field "importMethod" and extracted all data to an external embeddable class "Ext... Andreas Müller
10:48 AM feature request #3972 (Closed): Strictly validate username to not null and not empty
This should be fixed by fixing #8454 Andreas Müller
10:47 AM feature request #8454 (Resolved): Only allow certain patterns as username and groupname
This should be solved now and seems to work. Still needs testing in TaxEditor and maybe other surroundings. Andreas Müller
10:45 AM bug #8429 (Resolved): Rename DeterminationEvent_Reference.setOfReferences_id
This is fixed now by renaming the parameter in model from setOfReferences to references.
Making it a set of sourc...
Andreas Müller
10:45 AM feature request #8463 (New): Make DeterminationEvent.references sources
Currently the link to Reference but they should link to Source. DeterminationEvent should probably become a Sourceabl... Andreas Müller

08/13/2019

05:38 PM Revision 69944d4b (cdmlib): update model cache for schema version 5.8.1
Andreas Müller
05:02 PM Revision d9054fe5 (taxeditor): adapt TaxEditor to Schema changes v5.8.1
Andreas Müller
04:46 PM Revision d742db9a (cdmlib): ref #7099 preliminary removing initialization of authorities to avoid...
Andreas Müller
04:24 PM Revision 8b58ece8 (cdm-vaadin): adapt Vaadin to model changes v5.8.1
Andreas Müller
03:16 PM Revision 0059f9df (taxeditor): adapt test H2 to schema v5.8.1
Andreas Müller
03:13 PM Revision cf816bf2 (cdmlib): adapt test H2 to schema v5.8.1
Andreas Müller
03:13 PM Revision 3f6ffa04 (cdmlib): adapt poms to correct handling of versions => move versions to parent...
Andreas Müller
03:13 PM Revision 8d58f4b9 (cdmlib): ref #8454 fix UserAndGroupServiceImplTest
Andreas Müller
03:13 PM Revision 9bee6bd5 (cdmlib): ref #8442 fix some jaxb annotations
Andreas Müller
03:13 PM Revision d7b78aa0 (cdmlib): ref #8442 add externallyManaged to UserDefined classes for matching a...
Andreas Müller
03:13 PM Revision c39b4bdb (cdmlib): minor
Andreas Müller
03:13 PM Revision 609086da (cdmlib): ref #8442 jaxb for externallyManaged
Andreas Müller
03:13 PM Revision 43f0e2a1 (cdmlib): ref #8442 , ref #8429 adapt test schemas to model changes
Andreas Müller
03:13 PM Revision dd017de5 (cdmlib): ref #8442 update script for externally managed, ref #8454 update scri...
Andreas Müller
03:13 PM Revision 040eb2b6 (cdmlib): cleanup
Andreas Müller
03:13 PM Revision 8de7077d (cdmlib): add IRuleConsidered
Andreas Müller
03:13 PM Revision 7fd108f2 (cdmlib): ref #8442 add ExternallyManagedImport
Andreas Müller
03:13 PM Revision 816fdaa0 (cdmlib): ref #8442 add externallyManaged to DefinedTermBase and TermVocabulary...
Andreas Müller
03:13 PM Revision 4f817727 (cdmlib): ref #8442 move AuthorityType to model.common
Andreas Müller
03:13 PM Revision 6c8124b2 (cdmlib): ref #7099 update script for CdmAuthority tables
Andreas Müller
03:13 PM Revision 7b733b2a (cdmlib): ref #8429 rename DeterminationEvent.setOfReferences to DeterminationE...
Andreas Müller
03:13 PM Revision fbe7ab55 (cdmlib): adapt model version number
Andreas Müller
03:13 PM Revision 83615ec3 (cdmlib): ref #7099 fix loading of EnumSet and add tests
Andreas Müller
03:13 PM Revision b6177938 (cdmlib): ref #7099 add CdmAuthority to User, remove CDM_VIEW from tests, cleanup
Andreas Müller
03:13 PM Revision 6183e939 (cdmlib): ref #7099 further updates to CdmAuthority for persistance + add Role ...
Andreas Müller
03:13 PM Revision 7fbe6eb3 (cdmlib): ref #7099 rename CdmPermissionClass to PermissionClass
Andreas Müller
03:13 PM Revision 55ad1a65 (cdmlib): ref #7099 adapt CdmAuthority class
Andreas Müller
03:13 PM Revision d5579203 (cdmlib): ref #7099 rename model.rights to model.permission
Andreas Müller
03:13 PM Revision 39a05e3b (cdmlib): ref #7099 move CRUD and Operation to model
Andreas Müller
03:13 PM Revision dbc1a185 (cdmlib): ref #7099 minor
Andreas Müller
03:13 PM Revision 0377d70f (cdmlib): ref #7099 move CdmPermissionClass to model
Andreas Müller
03:13 PM Revision 899b7d66 (cdmlib): ref #7099 move user, group and GrantedAuthorityImpl to new rights pac...
Andreas Müller
03:13 PM Revision 0b091e82 (cdmlib): adapt SchemaUpdater_55_58 to new version
Andreas Müller
03:13 PM Revision 3ff6cdef (cdmlib): ref #8454 add regex to User.username and Group.name
Andreas Müller
03:09 PM Revision 8586ad49 (cdm-vaadin): adapt test H2 to schema v5.8.1
Andreas Müller
12:02 PM bug #8462 (Closed): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWor...
Reported by Henning on 04.08.19 19:17
**Fehler in PhycoBank, 102010, Treptacantha ballesterosii**
Beim Specie...
Andreas Kohlbecker
11:48 AM feature request #8461 (New): Change term URI of TDWG Term to identifier in additivity ontology
This should be done in bulk with a script Patrick Plitzner
11:20 AM feature request #8135 (Closed): Implement verbatim type information in TaxEditor
closing ticket -> translation will be handled in #8459 Patrick Plitzner
11:07 AM feature request #8460 (New): Show examples in text field
Some text field have labels that are not intuitive if you are not familiar with the EDIT platform. Having some inform... Patrick Plitzner
11:01 AM feature request #8459 (New): i18n for taxeditor details view
Patrick Plitzner
09:17 AM Revision 53627082 (taxeditor): ref #7597 Re-load dataset descriptions after aggregation
- adapt to service layer change (use UUID as parameter) Patrick Plitzner
09:14 AM Revision 0339827e (taxeditor): ref #7597 Clear matrix descriptions before loading them
Patrick Plitzner
09:13 AM Revision 845c6b16 (cdmlib): ref #7597 Fix deletion of aggregated descriptions
Patrick Plitzner
09:12 AM Revision 7353eb10 (cdmlib): cleanup
Patrick Plitzner
09:12 AM Revision 8efb1fe4 (cdmlib): ref #7597 Use UUID for service call
Patrick Plitzner
08:40 AM Revision 7bba825c (taxeditor): ref #8334 Move sources in details view to bottom
Patrick Plitzner

08/12/2019

11:41 PM task #8458: document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
As this has been worked on recently we should do it soon. Andreas Müller
05:39 PM task #8458 (In Progress): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
`FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection<FieldUnitDTO> fieldUnits,... Andreas Kohlbecker
11:36 PM task #8456: FieldUnitDTO: remove newInstanceMethod
Passing this ticket to Katja or Patrick as I never worked on/with this class.
Note: syntax of the method name is a...
Andreas Müller
05:31 PM task #8456 (Closed): FieldUnitDTO: remove newInstanceMethod
copied from #8414
FieldUnitDTO providing a newInstance method. This has to be removed:
~~~
/**
* @pa...
Andreas Kohlbecker
06:20 PM Revision a083a070 (cdmlib): ref #7597 Fix concurrent modification exception
Patrick Plitzner
06:20 PM Revision 644cd491 (taxeditor): ref #7597 Temporarily disable refresh after aggregation
Patrick Plitzner
05:44 PM bug #8448 (Closed): Maps settings > Bounding box inconsistent
works Andreas Kohlbecker
05:43 PM task #8414 (Closed): occurrence controller code cleaning and harmonization
all remaining tasks copied to new tickets Andreas Kohlbecker
05:36 PM task #8457 (Duplicate): FieldUnitDTO: remove taxonRelatedDerivedUnits
duplicates #8425 Andreas Kohlbecker
05:33 PM task #8457 (Duplicate): FieldUnitDTO: remove taxonRelatedDerivedUnits
copied from #8414
FieldUnitDTO.taxonRelatedDerivedUnits is an obsolete remain from an older implementation an ne...
Andreas Kohlbecker
05:08 PM task #8166 (Closed): Adapt dataportal to term structure changes
profile settings are working in the above test portals (palmweb has not been tested, since there is no cdm test insta... Andreas Kohlbecker
04:47 PM bug #8440 (Closed): specimen accession numbers link to specimen page
Wolf-Henning Kusber wrote:
>
> Warning in Test portal
> Notice: Array to string conversion in theme_item_list(...
Andreas Kohlbecker
04:46 PM task #8455 (New): Show specimen preferredStableURL as external link icon?
copied from #8440 , needs discussion. Andreas Kohlbecker
04:27 PM task #8449 (Closed): improve layout of registration page to clearly show the nomencaltural act
Andreas Kohlbecker
04:26 PM task #8436 (Closed): featureTree/* services should filter the termTrees by the TermType Feature
Andreas Kohlbecker
04:18 PM Revision 1a5b2194 (cdmlib): ref #8437 fixing LIE in DerivedUnitFacadeController
Andreas Kohlbecker
03:43 PM Revision 51c30254 (cdmlib): ref #7597 Delete all aggregated descriptions when re-aggregating
Patrick Plitzner
01:38 PM task #8406 (Feedback): specimens and occurrence code cleaning and harmonization
thank you for fixing this.
there are two commented code parts in this method:
~~~php
// $specimen_t...
Andreas Kohlbecker
11:27 AM task #8406: specimens and occurrence code cleaning and harmonization
the view for the search for the genetic accession number did not work anymore. I fixed it. Please have a look. Katja Luther
01:27 PM Revision f41c2b5e (cdm-dataportal): avoid accessing uninitialized variable
Andreas Kohlbecker
01:27 PM Revision d80b3059 (cdm-dataportal): ref #8440 adapting and extending tests
Andreas Kohlbecker
01:27 PM Revision 1f2c4dcf (cdm-dataportal): ref #8449 adapting test
Andreas Kohlbecker
12:34 PM feature request #8411: additional requirements for export/import path selection
the wizard shows the expanded view of the file system to the last selected diectory. So the last selected directory i... Katja Luther
12:25 PM bug #8446 (Closed): Allow setPublish for subtree to filter for hybrids
seems to work as expected Katja Luther
12:06 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermT...
Agreed ... and implemented in the way you pointed out. Andreas Kohlbecker
12:05 PM Revision 19b30c4f (cdmlib): ref #8437 ITermTreeService termType Feature as filter includes also C...
Andreas Kohlbecker
11:27 AM Revision ff51c1cd (cdm-dataportal): ref #8406: fix the view for the specimen hierarchy to a genet...
Katja Luther
10:49 AM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, mis...
please review Katja Luther
10:01 AM Revision 8cb3295a (cdmlib): setters of subtreeConfigurator should be void again, adapt tests
Katja Luther
 

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