Activity
From 08/03/2019 to 09/01/2019
09/01/2019
- 11:30 PM Revision 6861320c (cdmlib-apps): ref #8509 update PesiExportActivatorERMS
- 11:22 PM Revision 308df7ca (cdmlib-apps): ref #8509 fix synonym handling in PesiTransformer
- 11:21 PM Revision 0f099b94 (cdmlib-apps): ref #8509 handle ClassCastException for Kingdom taxa
- 11:20 PM Revision 06039e15 (cdmlib-apps): ref #8509 update PesiExportActivatorERMS
- 11:14 PM Revision 3221710a (cdmlib-apps): cleanup
- 11:08 PM Revision 68fa46a4 (cdmlib-apps): ref #8508 add single reference diff to ERMS pipeline validation
- 11:06 PM Revision 2fda02f8 (cdmlib): Exception handling in DbSingleAttributeExportMapperBase
- 11:03 PM Revision 739fa8d6 (cdmlib): minor
- 06:59 PM Revision 96dc2943 (cdmlib-apps): ref #8508 add first ERMS pipeline tests
- 06:23 PM Revision cb547089 (cdmlib-apps): ref #8508 add first ERMS pipeline tests
- 06:21 PM Revision 2c7f7f9b (cdmlib-apps): ref #8509 changes to ERMS export activator
- 06:15 PM task #8509 (In Progress): [PESI][ERMS] Export ERMS data to PESI
- 06:10 PM Revision 72fbf719 (cdmlib-apps): ref #1444 latest changes on ERMS import
- 05:58 PM Revision 52825a0c (cdmlib-apps): cleanup
- 05:52 PM Revision 071a4ba6 (cdmlib): ref #8508 add uniqueResult methods to Source
- 05:52 PM bug #8508 (In Progress): [PESI][ERMS] ERMS import pipeline validation
- Add validation for the correctnes of the ERMS->CDM->PESI pipeline
- 05:49 PM Revision 990febd3 (cdmlib): ref #1444 add some ISO 639-3 languages for ERMS import
- 05:48 PM Revision cfe5663e (cdmlib): error handling in Language csv reading
- 05:47 PM Revision b2c0f0f3 (cdmlib): cleanup and add new TermVocabulary.NewInstance method
08/31/2019
- 03:00 PM Revision c6c1ede7 (cdmlib-apps): ref #1444 handle truncated source.name (reference.titleCache)
- 02:59 PM Revision cdf5b39d (cdmlib-apps): cleanup
- 02:56 PM Revision 649ffe58 (cdmlib-apps): ref #1444 rename ERMS transformer uuids
- 02:51 PM Revision c4879dac (cdmlib-apps): some changes to activators
- 02:50 PM Revision 8804a550 (cdmlib-apps): ref #1444 update pesi/erms sources and destinations
- 02:47 PM Revision 2002808b (cdmlib): ref #1444 handle truncated source.name (reference.titleCache)
- 02:27 PM Revision 21cbca85 (cdmlib): cleanup
08/30/2019
- 09:40 PM bug #8189: Allow configuration of 'user.home' via the spring environment
- Andreas Müller wrote:
> The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows systems ... - 04:50 PM bug #8189 (Closed): Allow configuration of 'user.home' via the spring environment
- all remaining tasks copied to #8505
and closing this ticket - 08:59 PM feature request #8507 (New): Handle common names with same name and language but different area better in data portal
- As an example see: https://www.europlusmed.org/cdm_dataportal/taxon/eaa22491-9bf2-44f6-ba13-3eb3af6134a9
We could... - 08:04 PM task #8391: Name page shows complete name information (II)
- If you create subtasks you should put all tasks to subtasks. Otherwise ticket handling doesn't work well.
Preferred ... - 05:17 PM task #8506 (New): Remove the UpdatableRoutingDataSource, related classes and configuration
- The UpdatableRoutingDataSource has not been used for years and will never be reactivated since this concept would cau...
- 04:54 PM Revision 949c21de (cdmlib-apps): try to fix some compile errors with FeaturNode.NewInstance
- 04:45 PM task #8505 (Closed): ConfigFileUtil: turn all spring bean methods into not statical methods.
- follow up to #8189
in ConfigFileUtil
**1.** turn all spring bean methods into not statically methods.
**2.*... - 04:41 PM Revision 2e8d7de8 (cdmlib-apps): adapt erms destination and some minor cleanup
- 04:40 PM Revision 9c9b6f73 (cdmlib-apps): cleanup
- 04:35 PM Revision 4095de9d (cdmlib): remove deprecated listRankSpecificRootNodes
- 04:30 PM task #8504 (Closed): Name page: allow hiding the Taxon section via settings
- works as expected
- 03:22 PM task #8504 (Resolved): Name page: allow hiding the Taxon section via settings
- Applied in changeset commit:cdm-dataportal|c05ac190012f0f56d4d2b8d47d6e227eabe353ed.
- 03:05 PM task #8504 (Closed): Name page: allow hiding the Taxon section via settings
- 03:22 PM Revision c05ac190 (cdm-dataportal): fix #8504 setting to hide the taxa section in the name page
- 02:37 PM feature request #8344 (Feedback): Cdm light export: add dummy line in simple facts table
- I have no time to review this. But I remember a discussion with WGB where he complaint that the line endings are linu...
- 01:08 PM feature request #8178 (Rejected): Auto-create absence/presence character for every structure
- Rejecting ticket -> It does not always make sense to auto-create the "presence" character e.g. "Tepal Tip" is a struc...
- 08:56 AM feature request #8299: add typification column to scientific name and homotypical group in cdm light
- move to 5.10 for feedback of WB
08/29/2019
- 10:17 PM bug #8385: Open issues in DB preferences
- can you move open issues to #8489?
- 04:25 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> In local preferences Publish Flag for "Use Default" the Camel Case is used, not the current ... - 03:30 PM bug #8385: Open issues in DB preferences
- In local preferences Publish Flag for "Use Default" the Camel Case is used, not the current correct label. E.g. (NotP...
- 02:37 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Distribution editor: Restore default removes the entry "distribution.status.term" from the a... - 02:37 PM bug #8385: Open issues in DB preferences
- Katja Luther wrote:
> Andreas Müller wrote:
> > Distribution editor status and area selection: restore default dele... - 02:32 PM bug #8385: Open issues in DB preferences
- Distribution editor: Restore default removes the entry "distribution.status.term" from the above table (and completel...
- 02:30 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Distribution editor status and area selection: restore default deletes the values correctly ... - 02:28 PM bug #8385: Open issues in DB preferences
- Distribution editor status and area selection: restore default deletes the values correctly but when opening the sele...
- 02:21 PM bug #8385: Open issues in DB preferences
- Names.NomenclaturalStatus restores default only after clicking 2x "Restore Default". Or more exact, clicking the firs...
- 01:58 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Generally values recovered by "Restore default" often seem not to... - 01:22 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Generally values recovered by "Restore default" often seem not to be persisted but old value... - 01:16 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Saving of "Publish Flag" does not always work. You may try differ... - 01:15 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Andreas Müller wrote:
> > General: When choosing "No - allow override" for all 3 entries th... - 01:12 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Saving of "Publish Flag" does not always work. You may try different states including allow ... - 12:53 PM bug #8385: Open issues in DB preferences
- Katja Luther wrote:
> Andreas Müller wrote:
> > Is there a reason why allow override is always disabled for "Enable... - 12:48 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> General: When choosing "No - allow override" for all 3 entries the values shown in local pre... - 12:45 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Is there a reason why allow override is always disabled for "Enable Distribution Editor"?
... - 12:34 PM bug #8385 (Feedback): Open issues in DB preferences
- Is there a reason why allow override is always disabled for "Enable Distribution Editor"?
- 11:58 AM bug #8385 (Resolved): Open issues in DB preferences
- abcd preferences are moved to a new ticket, please review the rest.
- 06:58 PM Revision 064339ce (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 06:57 PM Revision abc1d0c7 (cdm-server): updating poms for branch'release/5.9.0' with non-snapshot versions
- 06:49 PM Revision 227b1bf9 (cdm-webapp): Merge branch 'release/5.9.0' into develop
- 06:48 PM Revision 4afdb1a4 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 06:48 PM Revision 284c75d7 (cdm-webapp): updating poms for branch'release/5.9.0' with non-snapshot versions
- 06:48 PM Revision 59697fa9 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.9.0
- 06:40 PM Revision 6c55794d (cdm-vaadin): Merge branch 'release/5.9.0' into develop
- 06:40 PM Revision f96f11e8 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 06:37 PM Revision 56fdc29e (cdm-vaadin): updating poms for branch'release/5.9.0' with non-snapshot versions
- 06:37 PM Revision 48bf314c (cdm-vaadin): jenkins bumping cdmlib.version to 5.9.0
- 06:36 PM Revision ba26d477 (taxeditor): Merge branch 'release/5.9.0' into develop
- 06:36 PM Revision f002ce64 (taxeditor): Merge branch 'release/5.9.0'
- 06:35 PM Revision 18a58edc (cdm-dataportal): Merge branch 'release/5.9.0' into develop
- 06:35 PM Revision 1472f5e7 (cdm-dataportal): updating poms for branch'release/5.9.0' with non-snapshot versions
- 06:35 PM Revision 697769be (cdm-dataportal): release-preparation: production level css
- 06:35 PM Revision 81b02ea5 (cdmlib): Updating develop poms back to pre merge state
- 06:35 PM Revision 42c74407 (cdmlib): Merge branch 'master' into develop
- 06:34 PM Revision 8ef7ee37 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 06:34 PM Revision 12d3d93e (cdmlib): Merge branch 'release/5.9.0'
- 06:17 PM Revision 3c1d7890 (cdmlib): updating poms for branch'release/5.9.0' with non-snapshot versions
- 04:19 PM Revision 0a635f6d (taxeditor): ref #8385: label issues
- 04:16 PM Revision bff2fb0f (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.9.0-SNAPSHOT
- 04:16 PM Revision 4150c139 (cdm-webapp): updating poms for 5.10.0-SNAPSHOT development
- 04:16 PM Revision 35a26a79 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.10.0-SNAPSHOT
- 04:15 PM Revision ada5bbbd (cdm-server): updating poms for 5.10.0-SNAPSHOT development
- 04:15 PM Revision bd4d96d0 (cdm-dataportal): updating poms for 5.10.0-SNAPSHOT development
- 04:15 PM Revision 76b888e0 (taxeditor): Updated version in pom / project files to taxeditor version : 5.10.0-SNAPSHOT and cdmlib version : 5.10.0-SNAPSHOT
- 04:14 PM Revision a1db19cb (taxeditor): Updated version in pom / project files to taxeditor version : 5.9.0 and cdmlib version : 5.9.0
- 04:14 PM Revision 07aaf958 (cdm-vaadin): jenkins bumping cdmlib.version to 5.9.0-SNAPSHOT
- 04:13 PM Revision cdf24655 (cdm-vaadin): updating poms for 5.10.0-SNAPSHOT development
- 04:13 PM Revision 1526db86 (cdm-vaadin): updating poms for 5.9.0 branch with snapshot versions
- 04:13 PM Revision c191327f (cdm-vaadin): jenkins bumping cdmlib.version to 5.10.0-SNAPSHOT
- 04:11 PM Revision d29d8048 (cdmlib): updating poms for 5.10.0-SNAPSHOT development
- 04:06 PM Revision 22a5aeff (cdmlib): ref #8248 Minor fixes for session saving
- 03:40 PM feature request #8503: Create abstract base UI from RegistrationUI and use it for all UIs
- > Especially it needs to be available for the distribution editor
agreed! This means it need to be done for the Di... - 03:10 PM feature request #8503: Create abstract base UI from RegistrationUI and use it for all UIs
- Especially it needs to be available for the distribution editor
- 03:08 PM feature request #8503 (Closed): Create abstract base UI from RegistrationUI and use it for all UIs
- The code which configures the error hanlder should also go into the abstract base class:
~~~java
Delegati... - 03:32 PM feature request #8304: Name page redirects to according taxon depending on query parameter
- the result of our call was the following:
The global switch which overrides the redirect behavior is not causing p... - 03:05 PM Revision 27bf6632 (cdmlib): ref #8441 remove cascading from FeatureState.feature and .state
- 02:49 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- the same issue was reported once again:
Test New name entered (not saved) new Basionym, new reference or selected ... - 02:36 PM Revision 75ca45ac (taxeditor): ref #8385: do not show default preference for distributionstatus
- 02:36 PM bug #8502: taxa with doubtful flag lack proper formatting
- Eckhard please can you test in http://test.e-taxonomy.eu/dataportal/preview/euromed/ if this issue is solved now?
- 02:35 PM bug #8502 (Resolved): taxa with doubtful flag lack proper formatting
- Applied in changeset commit:cdm-dataportal|61fc6c9311b1053b08ebb32085842f231edb3746.
- 02:15 PM bug #8502 (Closed): taxa with doubtful flag lack proper formatting
- taxa with doubtful flag lack proper formatting. The dataportal uses the titleCache instead of the taggedTitle.
- 02:35 PM Revision 61fc6c93 (cdm-dataportal): fix #8502 proper handling of tagged text for douptful taxa
- 02:28 PM Revision d84ac885 (taxeditor): ref #8489: fix set default for db term preferences
- 02:12 PM Revision 1d3ab649 (taxeditor): ref #8489: local term list are set to db preference value if default is selected
- 02:06 PM Revision cb75abfb (taxeditor): ref #8385: show db preference for local term preferences if default is selected
- 01:39 PM Revision 6f5b48f3 (taxeditor): ref #8385: setToDefault needs to setApply = true
- 01:15 PM Revision 53d771bb (taxeditor): ref #8385: fix enabling and disabling of distribution editor pref page
- 01:10 PM Revision 643f70e0 (taxeditor): ref #8385: adapt local default labels to db preference
- 12:52 PM Revision 44c33856 (taxeditor): ref #8385: fix enabling of allow override button
- 12:50 PM Revision c4ae573c (taxeditor): ref #8385: fix NPE
- 12:10 PM task #8501 (New): setup OWASP vulnerability checker for projects
The (jenkins plugin](https://wiki.jenkins.io/display/JENKINS/OWASP+Dependency-Check+Plugin) seems not to be worki...- 11:38 AM bug #8500: DistributionStatusUI: Error while detaching UI from session
- back to unassigned ....
- 10:54 AM bug #8500 (New): DistributionStatusUI: Error while detaching UI from session
~~~
[flora-cuba] 2019-08-29 10:12:43,276 WARN [org.eclipse.jetty.server.session.HashSessionManager@5330da99Timer...- 10:58 AM Revision bad6ba63 (cdmlib): avoid NPE in abcd import
- 10:52 AM Revision 10aabbdd (cdmlib): smaller issues in Abcd import
- 09:26 AM Revision 10a23387 (cdmlib-apps): ref #8499 committed additional parameter import for E+M
- 09:20 AM task #8499 (New): Decide how to handle additional parameters like refAuthorString and originalNomenclaturalTitle for Berlin Model/E+M
- They have been additionally imported to CDM from BM, as the information may be needed in future.
For Person it has... - 09:14 AM Revision f49ceeee (cdmlib-apps): cleanup
- 09:11 AM Revision c202fe96 (cdmlib): ref #8248 Check existing feature/state of FeatureState during import
- 09:10 AM Revision 576de855 (cdmlib): ref #8248 Adapt to new term node service
- 09:09 AM Revision f0109d06 (cdmlib-apps): ref #8479 split taxon and description import, remove auditing and some other improvements
- 05:14 AM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
- We could still add symbols with the current state of the flag to the "Set Flags" submenu. I created a new ticket for ...
- 05:12 AM bug #8498 (In Progress): Set Flags should show the current status of the flags
- Currently when setting the flag one does not know if the flag is set before or not. Especially for doubtful this is t...
08/28/2019
- 05:00 PM bug #8497 (Closed): NullPointerException (NPE) in AbstractCdmServerClient.generateTaxon()
- 03:47 PM bug #8497 (Resolved): NullPointerException (NPE) in AbstractCdmServerClient.generateTaxon()
- Applied in changeset commit:utis-core|8aacc65061a59b7e3efac378d7348d075e2dc0f9.
- 03:39 PM bug #8497 (Closed): NullPointerException (NPE) in AbstractCdmServerClient.generateTaxon()
- this bug breaks all Phycobank requsts:
~~~
Exception in thread "Thread-8191" java.lang.NullPointerException
... - 04:51 PM feature request #8180 (Closed): Add property term "Presence/Absence" to CDM default terms
- Terms and vocabulary are available in the taxeditor and replace possible existing presence/absence terms.
- 04:50 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
- 01:27 PM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
- For future a real freetext search might be preferable for the states in case there are >>10 states, but for now it is...
- 10:00 AM feature request #8475 (Resolved): Adapt applicable state detail view elements to FeatureState
- Removed empty element after first selection.
All issues should be fixed now. - 04:46 PM Revision 076d19ba (cdmlib): ref #8248 Fix import of character structure and property
- 03:47 PM Revision 8aacc650 (utis-core): fix #8497 avoiding NPE when using UTIS with older cdm instance (<5.9)
- 03:45 PM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
- now the allow override selection is now handled seperatly and the preference is only removed when default + allow ove...
- 10:28 AM bug #8389: Correct handling of default values with allowOverride=false
- But this is what this ticket is all about.
I can't remember that we decided to delete if "default" was selected AND ... - 10:12 AM bug #8389: Correct handling of default values with allowOverride=false
- Andreas Müller wrote:
> Katja Luther wrote:
> > The actual implementation is that if the default value is chosen al... - 10:03 AM bug #8389 (Feedback): Correct handling of default values with allowOverride=false
- Katja Luther wrote:
> The actual implementation is that if the default value is chosen allowOverride is set to true ... - 09:58 AM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
- 09:37 AM bug #8389: Correct handling of default values with allowOverride=false
- The actual implementation is that if the default value is chosen allowOverride is set to true and the checkbox is dis...
- 03:41 PM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
- the labels are moved
- 03:40 PM Revision 76ab205e (taxeditor): ref #8282: adapt order in navigator menu
- 03:40 PM Revision 89683c7f (taxeditor): ref #8385: smaller label issues
- 03:25 PM Revision 8849a7eb (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- 03:24 PM Revision c87189a7 (cdmlib): SpecimenTypeDesignation representations for names
- 03:09 PM bug #8496 (New): Improve public setters for entity collections
- I had a problem when writing the CDM2CDM import. Here I wanted to call the setter and replace the old collection (whi...
- 02:35 PM bug #8496 (Feedback): Improve public setters for entity collections
- Does this implementation cause any real problems or is it only semantically problem?
As far as I remember the culp... - 02:20 PM bug #8496 (New): Improve public setters for entity collections
- These were implemented in #7600.
Unfortunately the current semantics is that e.g. AnnotatableEntity.setAnnotations... - 02:54 PM Revision edf56664 (taxeditor): ref #8475 Remove empty element when single parent is selected
- 02:53 PM Revision ecc03050 (cdmlib): ref #8248 Import applicability feature states
- 02:23 PM feature request #8495 (Closed): classification tree horizontally scrolls to active entrty
- done!
- 02:16 PM feature request #8495 (Closed): classification tree horizontally scrolls to active entrty
- Wenn man sich durch die Classification klickt, verschwindet ab einer gewissen Ebene das, was man eigentlich sehen wil...
- 02:22 PM Revision dab60a9f (cdm-dataportal): ref #8495 classification tree scrolls horizontally to the active item
- 02:21 PM feature request #7600: public setters for entity collections
- There is an open issue with the current implementation. I created a new ticket: #8496
- 02:13 PM task #8479 (In Progress): [PESI][FE] Cdm-2-Cdm import for FauEu
- 02:05 PM bug #8494 (In Progress): Better ABCD Preferences Page
- to be done
see also #8489
also #8385#note-51,
#8385#note-52
~~Why does the nomenclatural code not provid... - 02:04 PM bug #8493: hide taxon page general tab TOC block if empty
- adding work in progress as patch file: attachment:issue-8493.patch
- 02:00 PM bug #8493 (In Progress): hide taxon page general tab TOC block if empty
- I tried solving this issue and found that the table of contents is not empty. For Euro+Med the synonymy has been hidd...
- 01:16 PM bug #8493 (In Progress): hide taxon page general tab TOC block if empty
- reported by Anton:
Hallo,
da ist so ein verrutschtes “Content” (s.u.).
https://www.europlusmed.org/?q=cdm_d... - 01:49 PM Revision de9fe10f (taxeditor): ref #8385: smaller label issues
- 12:57 PM Revision 95a16223 (cdmlib): ref #6774 export feature states
- 12:36 PM Revision 79bd864f (taxeditor): ref #8389: revert disabling of allowOverride for default selection
- 12:14 PM Revision 065f7e99 (cdmlib): ref #6794 Fix endless loop in OWL export
- 11:58 AM bug #8492: Adapt CsvNameExport to rollback only and generally review where and how it should be used
- These 2 tests failed:
~~~
Tests in error:
IOServiceExportTest.exportCSVNameTest:99 ? UnexpectedRollback Trans... - 11:57 AM bug #8492 (New): Adapt CsvNameExport to rollback only and generally review where and how it should be used
- To make the 2 CsvNameExport tests in TaxEditor test environment not fail, read only was set to false in CsvNameExport...
- 11:33 AM Revision 9622040d (cdmlib): ref #6794 Add progress monitor break point
- 11:32 AM Revision fe330183 (cdmlib): ref #6794 Fix potential ClassCastException
- 11:16 AM feature request #8491 (New): show higher taxon graph in name and taxon pages optionally
- Step 1: discuss the concept of showing the higher graph paths
- 10:50 AM Revision 5087fadc (cdm-dataportal): renaming search page tab to 'Taxon graph search'
- 09:59 AM Revision e8617cf0 (taxeditor): ref #8475 Remove empty element after first feature selection
- 09:58 AM Revision e1dfd329 (taxeditor): ref #8389: disable allowOverride when 'use default' is selected
- 09:52 AM Revision 5801fcdb (taxeditor): ref #8475 Update Finish button after state selection
- 09:40 AM feature request #8490 (New): Sitemap implemented
- This feature has been requested since the early days of the dataportal.
A "sitemap" for the following data types i... - 09:17 AM Revision cdbc4cb1 (cdmlib): adapt cdm light column names
- 02:06 AM Revision 5e8ef6ba (cdmlib): fix NPE in setNomenclaturalSource
- 02:05 AM Revision dc6b9347 (cdmlib): revert JAXB issues on NamedArea
- 02:05 AM Revision 1d213d90 (cdmlib): cleanup
- 01:43 AM Revision b617691e (cdmlib): remove redundant JAXB parameters from NamedArea
- 01:42 AM Revision 8da0b07f (cdmlib): ref #8479 add listUUIDs method
- 01:41 AM Revision 91c82b50 (cdmlib): cleanup
08/27/2019
- 10:12 PM Revision e03ae1b2 (cdmlib-apps): ref #8479 rename taxon node import class
- 10:10 PM Revision e94f29fe (cdmlib-apps): ref #8479 add concurrency to configurator
- 10:08 PM Revision c0238c65 (cdmlib-apps): ref #8479 move cdm2cdm methods down to base class
- 04:49 PM Revision b440115a (cdmlib-apps): ref #8479 concurrency in FauEu2CdmImport and some other improvements(?) like parent handling
- 04:36 PM Revision f1783317 (cdmlib): improved logging for TaxonNode with missing sortIndex
- 04:36 PM Revision d8ab86ef (cdmlib): ref #8479 propertyPaths fix for TermVocabulary
- 04:36 PM Revision 61f5e0eb (cdmlib): ref #8479 add concurrency, TaxonNodeOutStreamPartitionerConcurrent
- 04:36 PM Revision fccd79b3 (cdmlib): ref #8479 ordering for taxon nodes implemented in TaxonNodeFilter and in loadById
- 04:36 PM Revision 73556d6c (cdmlib): ref #8479 propertyPaths for TaxonNodeOutStreamPartitioner and introduce interface ITaxonNodeOutStreamPartitioner
- 04:36 PM Revision 676533cc (cdmlib): minor
- 02:44 PM Revision 531b0ee6 (taxeditor): ref #8385: fix specimen pref page
- 12:41 PM Revision 8fecfdbd (taxeditor): ref #8385: fix general prefs and publish flag prefs page
- 12:06 PM Revision d2a55134 (cdmlib): ref #8385: label issues
- 12:06 PM Revision e649e0cb (taxeditor): ref #8385: label issues, search dialog prefs...
- 09:08 AM Revision 694a5f9c (cdmlib): ref #8299: CdmLightExportTable new column
08/26/2019
- 03:27 PM Revision c793c58b (taxeditor): ref #8385: fix namedetails view configuration and rank selection
- 03:16 PM Revision 3d31b229 (taxeditor): ref #8385: fix nomenclatural status page
- 02:56 PM feature request #8299: add typification column to scientific name and homotypical group in cdm light
- I added two columns to homotypical group table: TypeString (for SpecimenTypeDesignations) and TypeCache (for TextualT...
- 02:55 PM Revision 423aaea9 (cdmlib): ref #8299: add TypeCache and TypeString to homotypical group table
- 02:43 PM Revision f02e08f4 (taxeditor): ref #8385: fix general and abcd pages
- 01:46 PM bug #8389: Correct handling of default values with allowOverride=false
- Has this been fixed in 5.9 together with #8385. To me it looks like fixed but I did not test systematically.
Pleas... - 01:41 PM bug #8385: Open issues in DB preferences
- ~~Generally values recovered by "Restore default" often seem not to be persisted but old values are kept.~~
fixed - 01:36 PM bug #8385: Open issues in DB preferences
- ~~Saving of "Publish Flag" does not always work. You may try different states including allow override adn "Restore D...
- 01:35 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Andreas Müller wrote:
> > General: When choosing "No - allow override" for all 3 entries th... - 01:22 PM bug #8385: Open issues in DB preferences
- ~~Search dialog: "Search also for titlecache ..." -> "... title cache ..."~~
fixed - 01:20 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> General: When choosing "No - allow override" for all 3 entries the values shown in local pre... - 01:15 PM bug #8385: Open issues in DB preferences
- ~~Publish Flage:~~
~~"Not Publish" -> "Don't Publish"~~
~~"Use Default (InheritFromParent)" -> kein Camel Case so... - 01:10 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Name details view: "Restore Defaults" does not enable "Secundum enabled" and "Secundum Refer... - 01:08 PM bug #8385: Open issues in DB preferences
- ~~NDV: "Whole Authorship section" -> "Whole authorship section"~~
- 01:08 PM bug #8385: Open issues in DB preferences
- ~~NDV: NameCache of the name ... -> "Name cache of the name ..."~~
- 01:07 PM bug #8385: Open issues in DB preferences
- ~~NDV: "Secundum Reference Details" -> "Secundum reference details"~~
- 01:06 PM bug #8385: Open issues in DB preferences
- ~~Name details view: "Restore Defaults" does not enable "Secundum enabled" and "Secundum Reference Details"~~
fixed - 01:02 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> Same for ranks. They are not stored.
Hmm, maybe I made a mistake. This seems to work. - 12:59 PM bug #8385: Open issues in DB preferences
- ~~Same for ranks. They are not stored.~~
fixed - 12:58 PM bug #8385: Open issues in DB preferences
- ~~Nomenclatural status is not stored. Neither after reopening the pref dialog nor after restarting the TaxEditor the ...
- 12:13 PM bug #8385: Open issues in DB preferences
- ~~General: When choosing "No - allow override" for all 3 entries the values shown in local preferences are "Use Defau...
- 10:48 AM bug #8385: Open issues in DB preferences
- >similar for BiocaseProvider: io.ABCD.providerList is stored with "Keine Provider verfügbar;" which seems to be incor...
- 10:45 AM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> > Biocase Provider for associated DNA should be moved to "Biocase Provider"
> >>this is no... - 10:38 AM bug #8385: Open issues in DB preferences
- >io.ABCD.config is stored in DB with value NULL even if nothing has changed, if this is default value, the default sh...
- 10:23 AM bug #8385: Open issues in DB preferences
- ~~ABCD: Restore defaults does not seem to set allowOverride~~
- 10:21 AM bug #8385: Open issues in DB preferences
- Why does the nomenclatural code not provide a default? Is this wanted? Does ABCD not need a nomenclatural code? I rem...
- 10:14 AM bug #8385: Open issues in DB preferences
- > Biocase Provider for associated DNA should be moved to "Biocase Provider"
>>this is not the same because this pro... - 10:00 AM bug #8385: Open issues in DB preferences
- ~~ABCD: Ignore Authorship ... -> Ignore authorship ...~~
fixed - 09:52 AM bug #8385: Open issues in DB preferences
- ~~"Show rank in Distribution Editor" should be relabled -> "Show rank column"~~
this is fixed - 09:05 AM bug #8385: Open issues in DB preferences
- ~~Name Details View: when selecting "restore defaults" allow override is not set to default~~
this is fixed - 09:04 AM bug #8385 (Feedback): Open issues in DB preferences
- ~~Name Details View: if UseDefaults(Disable) is selected the fields are not disabled in the same way as when selectin...
- 01:37 PM feature request #8489 (Resolved): Further issues for DB preferences
- * ~~Common names vocabulary select list:~~
* ~~has no "allow override" (as not yet present in local preferenc... - 01:21 PM feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
- Created new ticket for adding characters to feature trees - #8488
- 01:20 PM bug #8488 (Closed): Characters can not be added to feature trees
- 08:46 AM feature request #8486 (New): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Reviewed the setFlag part and set back to new for main task.
- 08:43 AM feature request #8180 (Resolved): Add property term "Presence/Absence" to CDM default terms
- 08:42 AM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
- A minor issue: can we have the order of the flags in the same order as in the assistent. That makes it more intuitive...
- 08:39 AM feature request #8447 (Closed): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
08/25/2019
- 01:39 PM Revision 7e398530 (cdmlib-apps): ref #8479 fix duplicate source repo creation
- 01:38 PM Revision 712e980f (cdmlib-apps): cleanup
- 01:37 PM Revision e3159da6 (cdmlib-apps): ref #8479 manual last commit for FauEu cdm2cdm import
- 01:35 PM Revision b71e7a9e (cdmlib): ref #8479 allow manual last commit for TaxonNodeOutStreamPartitioner
08/24/2019
- 12:44 AM Revision 42134444 (cdmlib): allow TaxonNodeOutStreamPartitioner to be readOnly = false and use in in CsvNameExport preliminary
- 12:43 AM Revision 774b85df (cdmlib): cleanup
08/23/2019
- 11:56 PM Revision e899bbdf (taxeditor): adapt rollback to new name
- 11:55 PM Revision 80b81212 (cdmlib): remove setRollbackOnly to test if this causes exception in TaxEditor tests. Also it looks like it should be used only in specific contexts
- 11:54 PM Revision 29421c03 (cdmlib): rename rollback method
- 11:53 PM Revision 063973ca (cdmlib): cleanup
- 11:44 PM Revision 8da3d0db (taxeditor): fix compile error due to new rollback method
- 11:10 PM Revision def8dda3 (cdmlib-apps): cleanup TaxonExcelCaryophyllalesActivator
- 11:10 PM Revision 5815f954 (cdmlib-apps): ref #8479 FauEu Cdm2Cdm import more or less running but still slow
- 11:09 PM Revision 9718c259 (cdmlib-apps): minor
- 11:07 PM Revision 52b594a2 (cdmlib): add rollback to ICdmRepository and use in TaxonNodeOutStreamPartitioner
- 11:06 PM Revision d0390c50 (cdmlib): cleanup
- 06:20 PM Revision 48a40f35 (taxeditor): ref #8475 Use feature selection dialog in feature state wizard
- 04:39 PM Revision 26d39860 (cdmlib): cleanup
- 04:12 PM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > In this case we do not need an "empty" choice for the dropdowns... - 02:59 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
- Andreas Müller wrote:
> In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs... - 10:07 AM feature request #8475: Adapt applicable state detail view elements to FeatureState
- In general this ticket can be closed as it works as expected.
- 10:06 AM feature request #8475: Adapt applicable state detail view elements to FeatureState
- I wonder if we could reduce the availability of "InapplicableIf" and "OnlyApplicableIF" to term nodes of term type "...
- 10:02 AM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
- In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs to have both, feature an...
- 04:01 PM feature request #8486: Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Can you add the changes to the ticket or is this not yet pushed?
- 04:00 PM feature request #8486 (Resolved): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- I preliminary give this to me to not forgot reviewing the next function. Disabling already is a good solution though ...
- 09:54 AM feature request #8486 (Closed): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Indicate the doubtful state in the taxon navigator somehow. E.g. by symbol "?" that we normally use for doubtful info...
- 03:49 PM Revision 11f52a90 (taxeditor): ref #8475 Remove not needed super method
- 03:34 PM feature request #8282: Implement placementDoubtful in TaxEditor
- the setDoubtful menu item is now implemented for the navigator, but it was not possible to set the menu to invisible ...
- 01:45 PM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
- 12:24 PM feature request #8282: Implement placementDoubtful in TaxEditor
- ok
- 11:37 AM feature request #8282: Implement placementDoubtful in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Also we should add the doubtful flag to the "Set flags" method in... - 11:35 AM feature request #8282: Implement placementDoubtful in TaxEditor
- Katja Luther wrote:
> the checkbox is moved below the publish checkbox.
works as expected. Ticket can be closed o... - 11:34 AM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
- Andreas Müller wrote:
> Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right ... - 09:52 AM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
- the checkbox is moved below the publish checkbox.
- 09:51 AM feature request #8282: Implement placementDoubtful in TaxEditor
- Andreas Müller wrote:
> The new field should be close to the taxon node information as it is from taxon node. Curren... - 03:29 PM Revision e9eec17d (taxeditor): Restructure ui.combo package
- 03:25 PM Revision 43ed2498 (taxeditor): ref #8282: add setDoubtful to setFlag menu in navigator
- 03:20 PM Revision d3ca3e94 (taxeditor): ref #8479 fix removeTaxonAgentRelation in TaxEditor
- 03:16 PM bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- The more sophisticated way is to adapt the underlying method to return an EnumSet, not an ordinary Set. With EnumSet ...
- 01:12 PM bug #8482 (Feedback): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- The problems obviously is fixed and the implementation looks good. Why did you comment the commit with "workaround"? ...
- 03:11 PM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
- Andreas Müller wrote:
> Generally it works and can be closed.
>
> Open issue (new ticket?) is that Characters can... - 12:06 PM feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
- Adjusted the context menu entries. Closing ticket.
- 09:50 AM feature request #8235: Create separate menu for term tree editors for each term tree type
- Generally it works and can be closed.
Open issue (new ticket?) is that Characters can not be added to Featuretrees... - 09:49 AM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
- Andreas Müller wrote:
> "New" and "Delete" is enough, we do not need "... Term Tree"
This seems not yet implement... - 02:57 PM Revision 570b874c (taxeditor): ref #8475 Only enable details view for feature and character term nodes
- 02:51 PM Revision b3fbf38e (cdmlib): ref #8180 ... and again try to fix the test data
- 02:37 PM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Hybrids are not a set of independent taxa but more a filter on ea... - 11:38 AM feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Andreas Müller wrote:
> Hybrids are not a set of independent taxa but more a filter on each group. So we should mayb... - 09:44 AM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- moving synonyms and hybrids is done.
- 09:42 AM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Andreas Müller wrote:
> "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't kn... - 02:36 PM Revision 0c676821 (taxeditor): ref #8447: disable finish if nothing is selected and hybrids disabled if no taxa or syn selected
- 02:35 PM Revision 0a788123 (cdmlib): ref #8180 ... and update test data in other projects
- 02:25 PM Revision 03335762 (cdmlib): ref #8180 fix incorrect UUID in test data
- 02:08 PM Revision 57ab1b79 (cdmlib): ref #7600 add explict adders for adder and remover methods to EntityCollectionSetterAdapter
- 02:08 PM Revision b781b5d5 (cdmlib): minor
- 02:08 PM Revision ed29b851 (cdmlib): ref #8479 make TaxonNode.addAgentRelation public and adapt remove method name
- 02:08 PM Revision 8b10ca03 (cdmlib): adapt CdmLightClassificationExport to hasXXX methods
- 02:08 PM Revision 749e8fb4 (cdmlib): ref #8180 Add vocabulary to test data
- 01:06 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- my implementation now is generic.
> Also it might be nice to have a little test that it works. Have you tested in ... - 10:28 AM task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Kohlbecker wrote:
> Agreed ... and implemented in the way you pointed out.
The current implementation is ... - 10:21 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- To me it looks like commit 1a5b2194 is not related to *this* ticket. Can you please check?
- 12:59 PM Revision acdfa184 (cdmlib): ref #8437 using TermType.getGeneralizationOf() to expand the termType restriction
- 12:44 PM Revision 6d8c9ff0 (cdmlib): add doubtful flag to TaxonNodeDto
- 12:30 PM Revision aa312f10 (taxeditor): ref #8475 Enhance FeatureStateWizard
- - Pre-select single parent feature if exists
- filter out features without supported categorical states - 12:07 PM task #8406 (Closed): specimens and occurrence code cleaning and harmonization
- dead code removed.
I think we can close this issue now since all open tasks have been copied to other tickets. - 09:04 AM task #8406: specimens and occurrence code cleaning and harmonization
- Andreas Kohlbecker wrote:
> thank you for fixing this.
>
> there are two commented code parts in this method:
> ... - 12:05 PM Revision c1639218 (cdm-dataportal): ref #8406 removing commented dead code
- 12:04 PM Revision 38f0da6e (taxeditor): ref #8235 adjust context menu items
- 12:04 PM Revision 0d40526c (taxeditor): remove debug message
- 11:21 AM Revision 47ca6691 (cdmlib): cleanup
- 11:18 AM Revision 2c2b731a (cdmlib): fix clone method for User
- 11:17 AM Revision b0a48ddf (cdmlib): ref #8180 Add Presence state vocabulary to default terms
- 11:08 AM Revision 04eabef3 (cdmlib): ref #8479 add hasXXX methods to TaxonNodeFilter
- 11:07 AM Revision e68bc8fa (cdmlib): ref #8479 make TaxonNodeOutStreamPartitioner read only by default.
- 10:34 AM feature request #7450 (Closed): Allow setPublish for subtree to include misapplied names and pro parte synonyms
- Moved better reporting to new ticket #8487 and close *this* ticket.
- 10:33 AM feature request #8487 (New): Report results of set publish
- It should include numbers per each group (taxa, synonyms, MAN, ...)
Also those MAN, ppSyns, shared taxa, which wer... - 10:09 AM bug #8481 (Rejected): NPE when opening feature tree
- I agree. Had a look to the data and for some reason the term with the given id really doesn't exist anymore. Don't kn...
- 09:55 AM feature request #8470: Handle username constraints in user and group editing
- I will implement this for the next release.
- 09:51 AM Revision b850c728 (taxeditor): ref #8282: move doubtful checkbox below publish checkbox
- 09:50 AM Revision aee8ed69 (taxeditor): ref #8447: move hybrids and synonyms
- 09:40 AM Revision 245bd5bc (taxeditor): ref #8447: only misapplied names or pro parte syn should work as well
- 09:31 AM Revision 962e47b4 (taxeditor): ref #3472: adapt labels for operation
- 09:31 AM feature request #3472 (Closed): Update name in source data when changing an accepted taxon into a synonym
- the new ticket is #8478 and the labels are adapted.
08/22/2019
- 04:10 PM Revision c2b34f0b (taxeditor): Do not show admin menu when not logged in
- 04:10 PM Revision a9abb9b0 (taxeditor): Fix "General" missing menu items
- 12:05 PM Revision 0c64a24d (taxeditor): Hide terms menu when not connected
- 11:34 AM Revision 7f9d6ac4 (cdm-vaadin): removing vaading testbench test
- 11:33 AM Revision c4ce17b3 (cdm-vaadin): removing runtime artifact
08/21/2019
- 04:12 PM bug #8481 (Feedback): NPE when opening feature tree
- Looking at the stacktrace this seem like corrupted data as the exception happen during TermRelationBase.getTerm().
... - 04:10 PM feature request #8485 (Closed): Add column groups to character matrix
- Does not have to be reviewed because still experimental
- 04:09 PM feature request #8485 (Resolved): Add column groups to character matrix
- Applied in changeset commit:taxeditor|c264cd9262db5bb03b83d94858c559cc985b8bc2.
- 03:09 PM feature request #8485 (Closed): Add column groups to character matrix
- Groups should reflect the hierarchy of the character tree.
- 04:10 PM feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
- 04:09 PM Revision 422fbab5 (taxeditor): ref #8235 Fix term tree sub menu and context menu
- 04:09 PM Revision c264cd92 (taxeditor): fix #8485 Add column groups to character matrix
- 04:09 PM Revision c9332db4 (taxeditor): Move util method to StoreUtil
- 12:29 PM bug #8484 (New): Exception is swallowed in taxon navigator
- In a corrupt database with taxon nodes without classification I got the following exception in the log file.
However... - 11:49 AM task #8483 (New): Return EnumSets in EnumeratedTermVoc.getGeneralizationOf and similar methods
- This may prevent from errors like in #8482
- 11:46 AM bug #8482 (Resolved): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- Applied in changeset commit:cdmlib|244c62c6bee1863dfe79d71e0ecae7bdeb4d06b5.
- 11:18 AM bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- Can be reproduced by:
http://int.e-taxonomy.eu/cdmserver/integration_palmae/portal/taxon/ce870eca-0422-4a3c-b849-0... - 11:46 AM Revision 244c62c6 (cdmlib): fix #8482 workaround fix for DescriptionType includes error
- 11:46 AM Revision 59b19202 (cdmlib): minor
- 11:09 AM bug #8385 (Resolved): Open issues in DB preferences
- please review
- 09:51 AM Revision 4a3a3258 (taxeditor): add higher taxon to search options for specimen - taxeditor
- 09:49 AM Revision 319a163b (cdmlib): add higher Taxon search option to specimen search
- 09:17 AM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
- Hallo Andreas,
danke für deine Einschätzung. Da du mich in meiner Auffassung bestätigst, werde ich das "is accept... - 09:17 AM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
- Hallo Andreas,
das war mir völlig unbekannt, dass wir sowas überhaupt haben/hatten. Daher hatte ich das ganze...
08/20/2019
- 12:52 PM Revision 7dc115d1 (taxeditor): adapt display of multiple status in distr editor to preference value
- 11:51 AM bug #8481: NPE when opening feature tree
- I get the same exception when trying to add an InapplicableIf to "Test Feature Tree" -> Citation -> Leaf color -> Ana...
- 11:47 AM bug #8481 (Rejected): NPE when opening feature tree
- When opening feature tree "Testdasdfa" on rem_conf_am I got
~~~
login : admin
editor version : 5.9.0.20190819225... - 11:45 AM feature request #8235: Create separate menu for term tree editors for each term tree type
- "New" and "Delete" is enough, we do not need "... Term Tree"
- 11:43 AM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
- Feature Tree Editors still have "New Structure Tree" and "New Property Tree" submenu.
Each Term type should have its... - 11:04 AM Revision 49078739 (taxeditor): minor in l10n
08/19/2019
- 04:58 PM bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
- I would rather close this tickets because it was created only to handle the bug. All other issues will be adressed in...
- 04:55 PM Revision 3250b022 (taxeditor): extract string constant
- 04:55 PM feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
- Applied in changeset commit:taxeditor|362b3a0c58e4b2b8620477ce38a80e2a3553bd36.
- 04:54 PM Revision 362b3a0c (taxeditor): fix #8235 Create separate menu for term tree editors for each type
- 04:48 PM Revision 128dc8b1 (cdmlib-apps): syntax for collective species uuid and some other PESITransformer fixes
- 04:47 PM Revision bb184a5d (cdmlib): syntax for collective species uuid
- 04:22 PM Revision a85f12b2 (cdmlib): minor
- 04:21 PM Revision 69f5b141 (cdmlib): some minor adaptations to CdmLightExport and CsvNameExport
- 04:21 PM Revision e1aea500 (cdmlib): minor
- 04:15 PM feature request #8480 (Closed): Use DescriptionTypes for matrix descriptions
- 04:14 PM feature request #8480 (Resolved): Use DescriptionTypes for matrix descriptions
- Applied in changeset commit:cdmlib|0b616910ec8af247ee13843c5058b22ac24efff0.
- 04:11 PM feature request #8480 (Closed): Use DescriptionTypes for matrix descriptions
- 04:15 PM feature request #7957 (Closed): Add types for taxon description (as EnumSet)
- Adapted descriptive data set service to use DescriptionType. Tried aggregation and tested display in matrix editor. A...
- 04:15 PM Revision 491e4eea (cdmlib-apps): ref #8404 add steplist to BgbmInstancesUpdater code
- 04:13 PM Revision ef8f40dd (taxeditor): fix #8480 Use DescriptionTypes for matrix descriptions
- 04:13 PM Revision 0b616910 (cdmlib): fix #8480 Use DescriptionTypes in descriptive data set service
- 04:12 PM Revision f2f47cbd (cdmlib-apps): ref #8479 First version of cdm2cdm import for FauEu (classes created, no real implementation yet)
- 04:11 PM task #8479 (In Progress): [PESI][FE] Cdm-2-Cdm import for FauEu
- Open issues:
* check if uuids are always kept for taxon nodes (sometimes addChild is used which probably creats co... - 04:09 PM Revision 9d685c8f (cdmlib-apps): ref 5448 latest changes to Geaessplanzenimport Excel
- 04:06 PM Revision c525794f (cdmlib-apps): fix to BerlinModelAreaImport. Not sure why this is needed only now
- 04:06 PM Revision 220dce9c (cdmlib-apps): last adaptation to E+M import (not needed anymore)
- 04:05 PM Revision ff763abe (cdmlib-apps): latest version of GreeceImageActivator
- 04:04 PM Revision bff0daf9 (cdmlib-apps): fix some compile errors in ERMS and FauEu
- 04:03 PM Revision 07de96ff (cdmlib-apps): minor
- 03:21 PM feature request #8475: Adapt applicable state detail view elements to FeatureState
- Added applicable detail elements to TermNode details view. Available features are filtered to only contain parent fea...
- 03:19 PM feature request #8475 (Resolved): Adapt applicable state detail view elements to FeatureState
- 03:18 PM Revision e9af789c (taxeditor): ref #8475 Filter available feature to only parent features
- 02:37 PM bug #8417: LazyInitializationException in TermDTO for media
- not important for this release -> move to 5.10
- 02:33 PM feature request #8478 (New): Follow up ticket for update empty name in source handling in TaxEditor
- We need a final implementation with a new wizard including the question if the name in sources should be taken from t...
- 02:30 PM Revision 719ac7ab (taxeditor): ref #8475 Add applicability detail element to character details view
- 02:27 PM Revision dc1780ec (taxeditor): ref #8385: fix nomenclatural code preference page - continue
- 01:27 PM feature request #8304: Name page redirects to according taxon depending on query parameter
- Hi Andreas, I think we have discussed this issue sometime at phone. Do you remember the results? Are they somewhere i...
- 01:06 PM Revision c9bb625e (taxeditor): ref #8385: fix nomenclatural code preference page
- 01:06 PM Revision dea4cffc (taxeditor): ref #8385: add allowOverride to AbcdProvider PreferencePage
- 12:33 PM Revision de4de718 (cdmlib-apps): ref #6794 , ref #7099 adapt E+M activator to terms package structure
- 10:54 AM Revision 22be3a02 (taxeditor): Update nebula composite table
- 10:16 AM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Ok, in generall this probably makes sense. Maybe I just wasn't used to it yet.
However, if this is the expected beha... - 09:40 AM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Andreas Müller wrote:
> Currently both methods do end in an unexpected state. After running the operation the old ta... - 09:53 AM Revision f9af366e (taxeditor): ref #8385: smaller changes in preferences
- 09:51 AM Revision 8437c047 (cdmlib): add preference predicates
- 09:42 AM Revision 041937b4 (taxeditor): ref #8385: fix problems in preferences
08/17/2019
- 02:10 AM Revision 54627755 (cdmlib-apps): remove RoteListeDbTaxonImportValidator
- 02:10 AM Revision 165e1209 (cdmlib-apps): ref #6794 , ref #7099 adapt app-import, pesi, eflora to modelchanges
- 01:02 AM Revision b5de83c2 (cdmlib): ref #8432 adapt javadoc
- 12:57 AM Revision 08f5d256 (cdmlib): ref #8432 adapt TermTreeDaoImpl.load such that default feature tree is only created and returned if the default feature tree uuid is passed to it
- 12:54 AM Revision 55e16d38 (cdmlib): minor
08/16/2019
- 10:36 PM bug #8385: Open issues in DB preferences
- ~~Restore button does not yet work for Distribution Editor status and area selection preferences~~
this is fixed - 10:33 PM bug #8385: Open issues in DB preferences
- ~~Distribution editor status selection: changes are not visible in Preferences view after reopening the preferences v...
- 10:27 PM bug #8385: Open issues in DB preferences
- ~~name.nomenclaturalStatus can not be removed by Reset Default~~
this is fixed. - 10:25 PM bug #8385: Open issues in DB preferences
- ~~some preferences are not deleted for NameDetailsView => deselect all and reopen preferences => 3 prefs stay selecte...
- 10:21 PM bug #8385: Open issues in DB preferences
- ~~ABCD import is now implemented on both sides, but "allow override" does not yet exist for "ABCD import provider"~~
... - 10:19 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> When opening Peferences - Distribution Editor for the first time the drop downs for some fie... - 10:12 PM bug #8385: Open issues in DB preferences
- >Name details view can not be set to "default" (always chooses enabled after reopening)
~~Now it always sets it ba... - 10:09 PM bug #8385 (Feedback): Open issues in DB preferences
- ~~When opening Peferences - Distribution Editor for the first time the drop downs for some fields were completely emp...
- 09:55 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Andreas Müller wrote:
> Please open a new ticket for the final implementation with a new wizard including the questi... - 09:51 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- The labels of the 2 menus should be equal except for the addition about the Name in Source. Is there a reason why you...
- 09:44 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Please open a new ticket for the final implementation with a new wizard including the question if the name in sources...
- 09:38 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- The method with setting the name should be moved down in menu
- 09:37 PM feature request #3472 (Feedback): Update name in source data when changing an accepted taxon into a synonym
- Currently both methods do end in an unexpected state. After running the operation the old taxon is dirty (and unsaved...
- 09:40 AM feature request #3472 (Resolved): Update name in source data when changing an accepted taxon into a synonym
- this is implemented now.
The setting of the name in source is configurable, but in editor a new wizard would be ne... - 09:24 PM bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
- I close this ticket as there is a follow up ticket.
- 09:22 PM feature request #8299 (Feedback): add typification column to scientific name and homotypical group in cdm light
- Testing is time consuming for me. Please ask Walter if it is as expected.
- 09:20 PM feature request #8334 (Closed): Move sources for type designations to details view
- 09:17 PM bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
- Hmm, now the warning is also shown if the misapplication is referenced e.g. by an identification key which is not nec...
- 09:05 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't know if it is maybe better ...
- 09:01 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- I think we may move synonyms below taxa as they are the second biggest group. Misapplications and pro parte synonyms ...
- 08:59 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Hybrids are not a set of independent taxa but more a filter on each group. So we should maybe move it down (directly ...
- 08:57 PM feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- If only Misapplications and/or pro parte synonyms are selected the finish button is not enabled but should (at least ...
- 08:43 PM feature request #8282: Implement placementDoubtful in TaxEditor
- Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right click menu.
- 12:24 PM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
- The new field should be close to the taxon node information as it is from taxon node. Currently it is in the middle o...
- 08:03 PM Revision 96b27743 (cdmlib): ref #7957 add javadoc to description types
- 07:00 PM Revision 7e477034 (cdmlib): ref #8441 add tests for FeatureState loading and move some test data to terms package
- 06:27 PM Revision 73ef4c0b (cdmlib): ref #8441 fix mapping for FeatureState
- 05:29 PM Revision cf3d9f76 (taxeditor): ref #8475 Create FeatureState in wizard dialog
- 04:33 PM Revision b02697a5 (cdmlib): minor
- 04:32 PM Revision 887eb4d0 (cdmlib): move term node DAOs to term package
- 03:35 PM Revision c34a11ca (taxeditor): ref #7957 adapt tests to DescriptionBase.types not null
- 03:33 PM Revision 06a2de9b (taxeditor): cleanup
- 03:22 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
- Since #6794 it is possible to distinguish term collections which include duplicates (e.g. structure trees which inclu...
- 03:09 PM feature request #8476 (Closed): Implement support for TermCollection.isFlat in TaxEditor
- Often term collections are meant to be a flat list or set without hierarchical dependencies. For these collections th...
- 03:09 PM Revision 593915d2 (taxeditor): ref #8475 First (unstable) implementation of FeatureState details
- 03:08 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
- 02:58 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
- In general the ordering seems to work now.
- 02:56 PM bug #8465 (Feedback): Term nodes order in term trees is ignored in term tree editor
- As Term nodes should be not always ordered anymore (TermCollection.orderRelevant flag) we could implement this alread...
- 02:45 PM feature request #8474 (Closed): Make TermCollection.orderRelevant usable for TermTrees
Dazu müsste es:
1. ~~editierbar sein~~
2. ~~Der TermTree müsste unterschiedlich sortiert angezeigt werden, je n...- 01:22 PM Revision c1662123 (taxeditor): ref #8385: adapt preference keys to preference predicates
- 01:22 PM bug #8473 (New): Migrate from GrantedAuthoritiesImpl to CdmAuthority and Role
- First of all the handling of authorities needs to be migrated and tested to AuthorityBase (by AK). Once this is done ...
- 01:14 PM bug #4884 (Closed): Update Reference_AUD.refType to allow NULL
- I guess this works.
- 12:49 PM Revision 94c6459b (taxeditor): fix search dialog default handling
- 12:41 PM feature request #8472 (Closed): Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- Currently it uses marker type "Computed" to mark the descriptions.
... also needs update script for existing descr... - 12:38 PM feature request #7957: Add types for taxon description (as EnumSet)
- This has been implemented now as an EnumSet for better performance.
Please review.
- 10:38 AM feature request #7957 (Resolved): Add types for taxon description (as EnumSet)
- Applied in changeset commit:cdmlib|1962891319edeb12380aa69994467f674a96ce96.
- 12:35 PM feature request #8471 (Closed): Computed descriptions should be disabled in TaxEditor
- Taxon descriptions being computed (DescriptionBase.types contains COMPUTED or AGGREGATED) should be disabled for edit...
- 12:16 PM feature request #8398: Add nomenclatural code edition to ruleConsidered
- As this was your (phycobank) requirement I give it to you for review.
- 12:15 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Maybe we can do this in 5.10 latest so it is close to the model change.
I think we should add it to configuration ... - 12:14 PM Revision 0ae3531b (taxeditor): minor
- 12:14 PM Revision a60ccec4 (taxeditor): ref #8385: enable apply button when provider added or removed from preference
- 12:14 PM Revision f9840e06 (taxeditor): ref #8385: correct preference handling for provider list
- 12:12 PM feature request #8404 (Closed): Add update step list within updaters
- Seems to work as expected and is very nice.
- 12:11 PM feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
- So I close this ticket.
- 12:10 PM feature request #8454: Only allow certain patterns as username and groupname
- This should be fixed. Who ever wants please review. I tested creating a new user and a group in TaxEditor. For both w...
- 12:04 PM feature request #8470 (Closed): Handle username constraints in user and group editing
- Since #8454 a regex exist for usernames and groupnames.
For new usernames and groups the TaxEditor should validat... - 11:47 AM feature request #8441: Add FeatureState class
- Please review.
Maybe there are issues with orphan removal handling. - 11:45 AM feature request #8441 (Resolved): Add FeatureState class
- This is implemented, old implementation still exists in parallel. Should be removed with next update script.
SDD I... - 11:41 AM feature request #8469 (In Progress): Open PolytomousKeyGenerator issues
- * ~~adapt dependency handling to new FeatureState handling~~
* in general improve the handling of dependencies, mayb... - 11:35 AM task #8468 (Closed): Remove old InapplicableIf tables
- 11:03 AM Revision 525deb12 (taxeditor): adapt test H2 to schema v5.8.2
- 11:02 AM Revision 34062138 (cdmlib): ref #7959 rename DescriptionState -> DescriptionType and fix bug for enum loading
- 10:48 AM Revision f922cb22 (cdmlib): adapt cached model to 5.8.2
- 10:43 AM Revision 7134ca41 (cdm-vaadin): adapt test H2 to schema v5.8.2
- 10:42 AM Revision f81da2cc (cdm-vaadin): minor
- 10:38 AM Revision eeafa6f5 (cdmlib): for the moment set TermCollection.orderRelevant default to true
- 10:36 AM Revision beb18173 (cdmlib): adapt TestModelUpdate to run for all 3 H2 DBs
- 10:34 AM Revision a0d6f613 (cdmlib): adapt test H2 to model changes v5.8.2
- 10:34 AM Revision 9276e073 (cdmlib): ref #7957 add not null to update script for DescriptionBase.types
- 10:15 AM Revision a3d196bc (taxeditor): fix test for swapAcceptedwithSynonym
- 10:14 AM Revision 3ff169c5 (taxeditor): fix test for swapAcceptedwithSynonym
- 10:10 AM Revision b1d5cef3 (cdmlib): Cleanup
- 10:10 AM Revision 20ffe9b7 (cdmlib): ref #7099 , ref #8464 some adaptions on constraints for CdmAuthority
- 10:10 AM Revision 19628913 (cdmlib): fix #7957 add types to DescriptionBase
- 10:10 AM Revision 49405267 (cdmlib): Use AccessType Field for Character class
- 10:10 AM Revision ec5f2748 (cdmlib): ref #8441 adapt testdata and SDDDocumentBuilder to FeatureState
- 10:10 AM Revision ddda469d (cdmlib): minor
- 10:10 AM Revision abe8cce6 (cdmlib): ref #8441 further implementation for FeatureState and inapplicableIf
- 10:10 AM Revision 4e36de56 (cdmlib): ref #8441 FeatureState classes added and TermNode adapted
- 10:00 AM Revision 73a78654 (cdmlib): ref #8467 add commented code
- - un-comment when cloned descriptions can be added to taxon
descriptions as sources - 09:37 AM Revision 682f52a4 (taxeditor): ref #3472: adapt editor to changes in methods moving descriptions
- 09:01 AM Revision fe8fa9b2 (cdmlib): ref #3472: fix set name in source
08/15/2019
- 04:09 PM feature request #7597 (Closed): Aggregate and persist descriptions on taxon level
- Closing this feature. No review needed as this is still experimental. Follow up ticket #8467
- 04:08 PM feature request #8467 (Closed): Save a "snapshot" of the SpecimenDescriptions used for aggregation
- When aggregating SpecimenDescriptions to a TaxonDescriptions the SDs used should be cloned and associated as sources ...
- 03:57 PM feature request #8464: Make AuthorityBases unique
- This seems to be more difficult then I thought.
In general hibernate allows the ,uniqueConstraints=@UniqueConstra... - 02:59 PM feature request #8441 (In Progress): Add FeatureState class
- 02:21 PM bug #8465 (Resolved): Term nodes order in term trees is ignored in term tree editor
- Applied in changeset commit:taxeditor|74a9e9d7da34b3e2d6a895a7b091364125c6f648.
- 12:19 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
- So, if the flag is switched on, the tree should be ordered by tree order, otherwise alphabetically (or by any other c...
- 12:06 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
- Note: The new TermCollection base class has a flag now called "orderRelevant". This should in future decide if the or...
- 10:32 AM bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
- ich hatte gerade einen neuen Feature Term "Chemophenetics" für den Cichorieae Feature Tree geschaffen , den wollte ic...
- 02:21 PM Revision 74a9e9d7 (taxeditor): fix #8465 Do not sort term nodes with term tree comparator
- 01:57 PM Revision 743a64ea (cdmlib): ref #3472: make setting of name in source configurable
- 01:52 PM task #8466 (Closed): Delete FeatureTree tables
- FeatureTree has been moved to TermCollection. The old tables have not yet been deleted to have the chance to find pos...
- 12:39 PM feature request #8442: Add fields to handle external terms to DefinedTermBase or TermBase
- Andreas Müller wrote:
> This should be fixed. Also added new field "importMethod" and extracted all data to an exter... - 10:41 AM Revision 6c4f05ea (cdmlib): ref #3472: add nameInSource in makeTaxonNodeSynonym
- 10:34 AM Revision d1d76c46 (cdmlib): ref #3472: swap Synonym and accTaxon should move all taxon information to the new taxon
- 10:24 AM Revision 56d0ef92 (cdmlib): add add unitGUID to abcd import
- 10:22 AM Revision f5050d21 (cdmlib): update caches prgress monitor with name
- 10:20 AM Revision af1131f2 (cdmlib): ref #8385: add method to get voc by uuid
- 10:17 AM Revision 905236e8 (taxeditor): ref #8385: adapt strucutre of db prefs to local prefs
- 09:50 AM Revision fddfd97b (taxeditor): missing l10n files
- 09:39 AM Revision da38bb5e (taxeditor): multiline text fiedl for reference title
- 09:39 AM Revision c03d27b9 (taxeditor): ref #8447: move shared taxa and disable if not needed
- 09:39 AM Revision 0c8bd397 (taxeditor): ref #8447: add man and pp to setPublish configurator wizard
- 09:15 AM feature request #8334 (Resolved): Move sources for type designations to details view
08/14/2019
- 11:45 AM feature request #7957 (In Progress): Add types for taxon description (as EnumSet)
- 11:04 AM Revision 9f84cafb (cdmlib): Adapt uniqueness and notNull for some authority parameters
- 10:59 AM task #7099: Make CdmAuthority a persistable class
- forgot to implement uniqueness. Moved to #8464
- 10:41 AM task #7099 (Resolved): Make CdmAuthority a persistable class
- This is implemented for now. Old GrantedAuthorities still exist and are in use but we could easily switch to new ones...
- 10:56 AM feature request #8464 (New): Make AuthorityBases unique
- The old GrantedAuthorityImpl.authority was unique and NotNull. This was forgotten to implement when implementing CdmA...
- 10:51 AM feature request #8442 (Resolved): Add fields to handle external terms to DefinedTermBase or TermBase
- This should be fixed. Also added new field "importMethod" and extracted all data to an external embeddable class "Ext...
- 10:48 AM feature request #3972 (Closed): Strictly validate username to not null and not empty
- This should be fixed by fixing #8454
- 10:47 AM feature request #8454 (Resolved): Only allow certain patterns as username and groupname
- This should be solved now and seems to work. Still needs testing in TaxEditor and maybe other surroundings.
- 10:45 AM bug #8429 (Resolved): Rename DeterminationEvent_Reference.setOfReferences_id
- This is fixed now by renaming the parameter in model from setOfReferences to references.
Making it a set of sourc... - 10:45 AM feature request #8463 (New): Make DeterminationEvent.references sources
- Currently the link to Reference but they should link to Source. DeterminationEvent should probably become a Sourceabl...
08/13/2019
- 05:38 PM Revision 69944d4b (cdmlib): update model cache for schema version 5.8.1
- 05:02 PM Revision d9054fe5 (taxeditor): adapt TaxEditor to Schema changes v5.8.1
- 04:46 PM Revision d742db9a (cdmlib): ref #7099 preliminary removing initialization of authorities to avoid LIE in AuthenticationPresenterTest
- 04:24 PM Revision 8b58ece8 (cdm-vaadin): adapt Vaadin to model changes v5.8.1
- 03:16 PM Revision 0059f9df (taxeditor): adapt test H2 to schema v5.8.1
- 03:13 PM Revision cf816bf2 (cdmlib): adapt test H2 to schema v5.8.1
- 03:13 PM Revision 3f6ffa04 (cdmlib): adapt poms to correct handling of versions => move versions to parent pom
- 03:13 PM Revision 8d58f4b9 (cdmlib): ref #8454 fix UserAndGroupServiceImplTest
- 03:13 PM Revision 9bee6bd5 (cdmlib): ref #8442 fix some jaxb annotations
- 03:13 PM Revision d7b78aa0 (cdmlib): ref #8442 add externallyManaged to UserDefined classes for matching and merging
- 03:13 PM Revision c39b4bdb (cdmlib): minor
- 03:13 PM Revision 609086da (cdmlib): ref #8442 jaxb for externallyManaged
- 03:13 PM Revision 43f0e2a1 (cdmlib): ref #8442 , ref #8429 adapt test schemas to model changes
- 03:13 PM Revision dd017de5 (cdmlib): ref #8442 update script for externally managed, ref #8454 update script for username patterns
- 03:13 PM Revision 040eb2b6 (cdmlib): cleanup
- 03:13 PM Revision 8de7077d (cdmlib): add IRuleConsidered
- 03:13 PM Revision 7fd108f2 (cdmlib): ref #8442 add ExternallyManagedImport
- 03:13 PM Revision 816fdaa0 (cdmlib): ref #8442 add externallyManaged to DefinedTermBase and TermVocabulary and make ExternallyManaged an embeddable class
- 03:13 PM Revision 4f817727 (cdmlib): ref #8442 move AuthorityType to model.common
- 03:13 PM Revision 6c8124b2 (cdmlib): ref #7099 update script for CdmAuthority tables
- 03:13 PM Revision 7b733b2a (cdmlib): ref #8429 rename DeterminationEvent.setOfReferences to DeterminationEvent.references
- 03:13 PM Revision fbe7ab55 (cdmlib): adapt model version number
- 03:13 PM Revision 83615ec3 (cdmlib): ref #7099 fix loading of EnumSet and add tests
- 03:13 PM Revision b6177938 (cdmlib): ref #7099 add CdmAuthority to User, remove CDM_VIEW from tests, cleanup
- 03:13 PM Revision 6183e939 (cdmlib): ref #7099 further updates to CdmAuthority for persistance + add Role class
- 03:13 PM Revision 7fbe6eb3 (cdmlib): ref #7099 rename CdmPermissionClass to PermissionClass
- 03:13 PM Revision 55ad1a65 (cdmlib): ref #7099 adapt CdmAuthority class
- 03:13 PM Revision d5579203 (cdmlib): ref #7099 rename model.rights to model.permission
- 03:13 PM Revision 39a05e3b (cdmlib): ref #7099 move CRUD and Operation to model
- 03:13 PM Revision dbc1a185 (cdmlib): ref #7099 minor
- 03:13 PM Revision 0377d70f (cdmlib): ref #7099 move CdmPermissionClass to model
- 03:13 PM Revision 899b7d66 (cdmlib): ref #7099 move user, group and GrantedAuthorityImpl to new rights package
- 03:13 PM Revision 3ff6cdef (cdmlib): ref #8454 add regex to User.username and Group.name
- 03:13 PM Revision 0b091e82 (cdmlib): adapt SchemaUpdater_55_58 to new version
- 03:09 PM Revision 8586ad49 (cdm-vaadin): adapt test H2 to schema v5.8.1
- 12:02 PM bug #8462 (Closed): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- Reported by Henning on 04.08.19 19:17
**Fehler in PhycoBank, 102010, Treptacantha ballesterosii**
Beim Specie... - 11:48 AM feature request #8461 (Closed): Change term URI of TDWG Term to identifier in additivity ontology
- This should be done in bulk with a script
- 11:20 AM feature request #8135 (Closed): Implement verbatim type information in TaxEditor
- closing ticket -> translation will be handled in #8459
- 11:07 AM feature request #8460 (New): Show examples in text field
- Some text field have labels that are not intuitive if you are not familiar with the EDIT platform. Having some inform...
- 11:01 AM feature request #8459 (New): i18n for taxeditor details view labels
- 09:17 AM Revision 53627082 (taxeditor): ref #7597 Re-load dataset descriptions after aggregation
- - adapt to service layer change (use UUID as parameter)
- 09:14 AM Revision 0339827e (taxeditor): ref #7597 Clear matrix descriptions before loading them
- 09:13 AM Revision 845c6b16 (cdmlib): ref #7597 Fix deletion of aggregated descriptions
- 09:12 AM Revision 7353eb10 (cdmlib): cleanup
- 09:12 AM Revision 8efb1fe4 (cdmlib): ref #7597 Use UUID for service call
- 08:40 AM Revision 7bba825c (taxeditor): ref #8334 Move sources in details view to bottom
08/12/2019
- 11:41 PM task #8458: document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- As this has been worked on recently we should do it soon.
- 05:39 PM task #8458 (Closed): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- `FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection<FieldUnitDTO> fieldUnits,...
- 11:36 PM task #8456: FieldUnitDTO: remove newInstanceMethod
- Passing this ticket to Katja or Patrick as I never worked on/with this class.
Note: syntax of the method name is a... - 05:31 PM task #8456 (Closed): FieldUnitDTO: remove newInstanceMethod
- copied from #8414
FieldUnitDTO providing a newInstance method. This has to be removed:
~~~
/**
* @pa... - 06:20 PM Revision a083a070 (cdmlib): ref #7597 Fix concurrent modification exception
- 06:20 PM Revision 644cd491 (taxeditor): ref #7597 Temporarily disable refresh after aggregation
- 05:44 PM bug #8448 (Closed): Maps settings > Bounding box inconsistent
- works
- 05:43 PM task #8414 (Closed): occurrence controller code cleaning and harmonization
- all remaining tasks copied to new tickets
- 05:36 PM task #8457 (Duplicate): FieldUnitDTO: remove taxonRelatedDerivedUnits
- duplicates #8425
- 05:33 PM task #8457 (Duplicate): FieldUnitDTO: remove taxonRelatedDerivedUnits
- copied from #8414
FieldUnitDTO.taxonRelatedDerivedUnits is an obsolete remain from an older implementation an ne... - 05:08 PM task #8166 (Closed): Adapt dataportal to term structure changes
- profile settings are working in the above test portals (palmweb has not been tested, since there is no cdm test insta...
- 04:47 PM bug #8440 (Closed): specimen accession numbers link to specimen page
- Wolf-Henning Kusber wrote:
>
> Warning in Test portal
> Notice: Array to string conversion in theme_item_list(... - 04:46 PM task #8455 (New): Show specimen preferredStableURL as external link icon?
- copied from #8440 , needs discussion.
- 04:27 PM task #8449 (Closed): improve layout of registration page to clearly show the nomencaltural act
- 04:26 PM task #8436 (Closed): featureTree/* services should filter the termTrees by the TermType Feature
- 04:18 PM Revision 1a5b2194 (cdmlib): ref #8437 fixing LIE in DerivedUnitFacadeController
- 03:43 PM Revision 51c30254 (cdmlib): ref #7597 Delete all aggregated descriptions when re-aggregating
- 01:38 PM task #8406 (Feedback): specimens and occurrence code cleaning and harmonization
- thank you for fixing this.
there are two commented code parts in this method:
~~~php
// $specimen_t... - 11:27 AM task #8406: specimens and occurrence code cleaning and harmonization
- the view for the search for the genetic accession number did not work anymore. I fixed it. Please have a look.
- 01:27 PM Revision f41c2b5e (cdm-dataportal): avoid accessing uninitialized variable
- 01:27 PM Revision 1f2c4dcf (cdm-dataportal): ref #8449 adapting test
- 01:27 PM Revision d80b3059 (cdm-dataportal): ref #8440 adapting and extending tests
- 12:34 PM feature request #8411: additional requirements for export/import path selection
- the wizard shows the expanded view of the file system to the last selected diectory. So the last selected directory i...
- 12:25 PM bug #8446 (Closed): Allow setPublish for subtree to filter for hybrids
- seems to work as expected
- 12:06 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Agreed ... and implemented in the way you pointed out.
- 12:05 PM Revision 19b30c4f (cdmlib): ref #8437 ITermTreeService termType Feature as filter includes also Character
- 11:27 AM Revision ff51c1cd (cdm-dataportal): ref #8406: fix the view for the specimen hierarchy to a genetic acc nr
- 10:49 AM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- please review
- 10:01 AM Revision 8cb3295a (cdmlib): setters of subtreeConfigurator should be void again, adapt tests
08/09/2019
- 02:36 PM bug #8444 (Resolved): Show warning if misapplied names / pro parte synonyms are used more then once
- So I change ticket title for documentation
- 11:59 AM bug #8444: Show warning if misapplied names / pro parte synonyms are used more then once
- now the warning is implemented as well.
- 11:59 AM bug #8444 (Worksforme): Show warning if misapplied names / pro parte synonyms are used more then once
- ahh, yes, sorry, I didn't expect the taxon details to be in a subsection. But this makes sense. We can close this tic...
- 11:19 AM bug #8444: Show warning if misapplied names / pro parte synonyms are used more then once
- the publish flag is already implemented (maybe the taxon details are collapsed?).
- 12:58 PM Revision da93b804 (taxeditor): minor
- 12:32 PM Revision d12aae39 (cdmlib): ref #8282: adapt save taxonnode to new doubtful attribute
- 12:31 PM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
- this is implemented now, please review.
- 12:17 PM feature request #8282 (In Progress): Implement placementDoubtful in TaxEditor
- 12:30 PM Revision 4601cb73 (taxeditor): ref #8282: adapt editor to new doubtful attribute in taxonnode
- 12:13 PM task #7099 (In Progress): Make CdmAuthority a persistable class
- 12:11 PM Revision bd2dfdfa (cdmlib): cleanup
- 11:59 AM Revision 5f3e1fcb (taxeditor): fix #8444: add warning if taxon used in taxonrelationship is used more than once
- 10:36 AM feature request #8299: add typification column to scientific name and homotypical group in cdm light
- please review
- 10:16 AM feature request #8454 (In Progress): Only allow certain patterns as username and groupname
- 09:20 AM feature request #8454 (Closed): Only allow certain patterns as username and groupname
- ... to avoid unwanted characters like ;,ö*... Also avoid unvisible characters, whitespaces and linebrakes this way.
...
08/08/2019
- 10:08 PM Revision 3de07382 (cdmlib): minor
- 03:53 PM bug #8430 (Closed): maps zoom to wrong bbox with some layers
- Seems to work correctly. I could not find a non-working portal. Also checked some production portals as this was rele...
- 03:42 PM feature request #8135 (Feedback): Implement verbatim type information in TaxEditor
- Works as expected. Minor issue: translation for button is missing. Can be closed afterwards.
- 03:39 PM feature request #8334 (Feedback): Move sources for type designations to details view
- Not designated (for SpecimenTypeDesignation) shows up below the sources, but should be above. Sources should be on bo...
- 03:24 PM Revision 63ada120 (taxeditor): ref #7597 Use aggregation config (recurse aggregation = true)
- 03:24 PM Revision dead0aaf (cdmlib): ref #7597 Add configuration to data set aggregation
- - implement recursive aggregation
- 02:26 PM bug #8446: Allow setPublish for subtree to filter for hybrids
- Kajta, can you please review functionality once implemented in TaxEditor?
- 02:22 PM bug #8446 (Resolved): Allow setPublish for subtree to filter for hybrids
- Applied in changeset commit:cdmlib|c44fd9bd6420a032ab1e04c3b92ee4c20f2aac93.
- 02:24 PM Revision 77f78293 (cdmlib): cleanup
- 02:22 PM Revision c44fd9bd (cdmlib): fix #8446 Allow setPublish for subtree to filter for hybrids
- 02:05 PM Revision 9c128421 (taxeditor): ref #8385: adapt local and db preference pages
- 02:03 PM Revision fe64715e (cdmlib): ref #8385: add new preference predicates
- 01:42 PM task #8449: improve layout of registration page to clearly show the nomencaltural act
- The layout is fully satisfying (for new names/types and types)
Order also checked for example for a type only:
... - 10:24 AM feature request #8453 (New): Improve performance of DescriptiveDataSet
- A DescriptiveDataSet stores taxon and specimen descriptions and a set of taxon nodes. While taxon descriptions are di...
- 09:38 AM bug #8440: specimen accession numbers link to specimen page
- Tested for Registration page, name page, and specimen page.
Example: Gomphonella acsiae
Links are working.
W... - 09:22 AM task #8424: evaluate publish flags in the full derivative path
- As far as I know the SpecimenOrObservation publish flag is not evaluated by webservices at all, yet (or only in very ...
- 09:14 AM feature request #8452 (New): [DISCUSS] Should taxa hava an explicit taxon description for specimen?
- Maybe it would be helpful to separate taxon descriptions with specimens and those with other description elements.
... - 09:07 AM feature request #8451 (New): Link specimen to taxon via Drag and Drop
- It would be a nice feature to be able to link a specimen to a taxon via drag&drop. This could be done from the specim...
- 08:36 AM feature request #7589 (Closed): Performance, UX and stability patches for CharacterMatrix
- 08:36 AM feature request #7589: Performance, UX and stability patches for CharacterMatrix
- Closing this ticket to avoid getting to big -> Opening new ticket with specific UX issues -> #8450
- 08:35 AM feature request #8450 (New): Character matrix UX
- **Details View für Einzelwerte in Matrix**
wenn ich in der Matrix den Details View verwende (was sicher selten der F...
08/07/2019
- 10:00 PM task #8449 (Resolved): improve layout of registration page to clearly show the nomencaltural act
- please review
- 09:44 PM task #8449 (Closed): improve layout of registration page to clearly show the nomencaltural act
- As discussed with Henning on Friday 2nd of August 2019, we decided for the following solution:
* the nomenclatural... - 09:47 PM Revision c5abae79 (cdm-dataportal): ref #8449 registration page: better emphasizing the nomenclatural act to make clear what has been registered
- 04:54 PM feature request #8403 (Rejected): name page: show types specimens as expandable derivate tree
- 04:54 PM feature request #8403 (Closed): name page: show types specimens as expandable derivate tree
- Andreas Kohlbecker wrote:
> code need to be cleaned up
done!
- 04:53 PM Revision a44d210c (cdm-dataportal): ref #8403 removing rejected implementation
- 04:50 PM bug #8440 (Resolved): specimen accession numbers link to specimen page
- please review
- 04:48 PM Revision e69c4103 (cdm-dataportal): ref #8440 consistent display of type specimens: link to specimen page and showing preferredStableUri
- 04:06 PM Revision 2ac046d4 (taxeditor): Add missing dependency
- 03:52 PM bug #8448 (Resolved): Maps settings > Bounding box inconsistent
- 03:37 PM bug #8448 (Closed): Maps settings > Bounding box inconsistent
- according to the settings documentation the *Bounding box* needs to be entered in degree.
After fixing #8430 using... - 03:51 PM Revision 8e2d0259 (cdm-dataportal): ref #8448 changing the map setting to use the projection conform bbox
- 03:07 PM Revision 2e63da0d (cdm-dataportal): Merge tag '5.8.3' into develop
- tagging hotfix 5.8.3
- 03:07 PM Revision 51624a65 (cdm-dataportal): Merge branch 'hotfix/5.8.3'
- 03:07 PM Revision 7cc1655b (cdmlib): fix #7450 try to fix failing test when running in test suite
- 03:06 PM Revision e39effec (cdm-dataportal): ref #8430 fixing pojection definition for epsg:7777777 (euromed)
- 02:44 PM Revision 89eab8c6 (taxeditor): Revert "Fix potential NPE"
- This reverts commit 5e45f5399ffa158d92ef215ba484f3f230e6a5ae.
- 02:44 PM Revision 40ba0cf9 (taxeditor): Revert "Disable (unused) context menu"
- This reverts commit aa85a093ec65f0492e9d73cffd87f87be105e438.
- 02:39 PM Revision 49c7b44e (cdm-dataportal): ref #8430 fixing pojection definition for epsg:7777777 (euromed)
- 02:14 PM Revision 528e8632 (taxeditor): ref #7597 Fix potential class cast exception
- 01:44 PM feature request #8447 (Closed): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Also have in mind that the includeSharedTaxa parameter is valid for accepted taxa, misapplications and pro parte syno...
- 01:42 PM bug #8446 (Closed): Allow setPublish for subtree to filter for hybrids
- In E+M we do not want to set the publish flag to true for hybrids so we need a filter to do so. Alternatively we shou...
- 01:39 PM feature request #7450 (Resolved): Allow setPublish for subtree to include misapplied names and pro parte synonyms
- Applied in changeset commit:cdmlib|5fb16579cd1fbce2bfa19f12bebc0d4711b23b90.
- 01:39 PM Revision 5fb16579 (cdmlib): fix #7450 allow setPublish for subtree to include misapplied names and pro parte synonyms
- 12:15 PM task #8445 (Closed): improve service description
- a.mueller wrote:
„UTIS connects the web services of the Pan-European Species directories Infrastructure (EU-Nomen)... - 09:31 AM Revision 5593cba0 (cdmlib): fixing NPE in DerivedUnitFacadeCacheStrategy.getUnitNumber()
08/06/2019
- 02:40 PM Revision 8a1e1e44 (cdmlib): cleanup
- 02:14 PM Revision 27296e89 (cdmlib): cleanup and stream API for ForSubtreeConfigurator
- 02:13 PM Revision 98df38b9 (cdmlib): pretty print testSetSecundumForSubtree test data
- 01:16 PM Revision 8f81816e (taxeditor): adapt setPublishFlagConfigurator constructor call
- 01:14 PM Revision 278d7608 (taxeditor): adapt setPublishFlagConfigurator constructor call
- 01:03 PM Revision a138d490 (taxeditor): adapt setPublishFlagConfigurator constructor call
- 12:53 PM Revision e867c225 (cdmlib): ref #7450 implement interfaces and signatures for setPublishForSubtree for misapplications and ppSyns (not yet implemented)
- 12:44 PM Revision de671fe5 (cdmlib): minor
- 12:35 PM Revision 16bef6ee (taxeditor): ref #7597 Invoke aggregation in parallel thread
- - add progress monitor
- 12:35 PM Revision aa85a093 (taxeditor): Disable (unused) context menu
- 12:35 PM Revision 50cf49ac (taxeditor): Fix potential NPE
- 12:35 PM Revision 5e45f539 (taxeditor): Fix potential NPE
- 12:34 PM Revision e7eee67d (cdmlib): ref #7597 Add progress monitor to aggregation service call
- 11:19 AM Revision ab6c57c0 (cdmlib): ref #8365: fix NPE in abcd tests
- 10:02 AM Revision 4e9e938f (cdmlib): use configurator for setPublish flag
08/05/2019
- 04:19 PM Revision f928093b (cdmlib): ref #7450 revert the incorrect c&p from last commit
- 04:11 PM Revision 53df0a40 (cdmlib): ref #7450 use PublishForSubtreeConfigurator in TaxonNodeService
- 04:11 PM Revision c1a30095 (cdmlib): cleanup
- 04:11 PM Revision 878c54ea (cdmlib): ref #8429 add SchemaUpdater_58_581 and implement update script for setOfReferences renaming
- 04:11 PM Revision 7bd0a31e (cdmlib): minor
- 02:01 PM bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
- ... please also consider a "is used more then once" check for such relations
- 12:42 PM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
- is this only an UI issue or is it also a cdmlib-security issue?
- 12:14 PM bug #8443 (New): a user with only rights on a subtree can edit taxa and names of another subtree
- the user with rights on a subtree is able to edit taxa outside the defined subtree. The only limitation is creation a...
- 10:58 AM task #8435: Reduce logging amount of exports and other long running tasks
- Katja, can you work on this?
- 10:55 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Have you tested with termType = Character which is a subtype ... - 10:37 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Müller wrote:
> Have you tested with termType = Character which is a subtype for Feature. I don't think the ... - 09:59 AM Revision f93dab43 (cdmlib): Revert "minor - fix merge conflict"
- This reverts commit fc3932ac4dd186b6f5809863356912f949ae202d.
- 09:51 AM Revision fc3932ac (cdmlib): minor - fix merge conflict
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