Activity
From 07/08/2019 to 08/06/2019
08/05/2019
- 02:01 PM bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
- ... please also consider a "is used more then once" check for such relations
- 12:42 PM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
- is this only an UI issue or is it also a cdmlib-security issue?
- 12:14 PM bug #8443 (New): a user with only rights on a subtree can edit taxa and names of another subtree
- the user with rights on a subtree is able to edit taxa outside the defined subtree. The only limitation is creation a...
- 10:58 AM task #8435: Reduce logging amount of exports and other long running tasks
- Katja, can you work on this?
- 10:55 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Have you tested with termType = Character which is a subtype ... - 10:37 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Müller wrote:
> Have you tested with termType = Character which is a subtype for Feature. I don't think the ...
08/02/2019
- 08:39 PM feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
- Similar to those created for Reference (#6663).
The fields are
* last retrieved
* externalId
* externalLink
... - 08:25 PM feature request #8441 (Closed): Add FeatureState class
- ... for inapplicableIf and onlyApplicableIf states and add/change the relationships to TermNode
- 08:22 PM bug #8429 (In Progress): Rename DeterminationEvent_Reference.setOfReferences_id
- For now we do the column renaming with a model change.
DeterminationEvent_Reference.setOfReferences_id = reference... - 05:53 PM feature request #8403 (In Progress): name page: show types specimens as expandable derivate tree
- code need to be cleaned up
- 05:52 PM feature request #8403 (Rejected): name page: show types specimens as expandable derivate tree
- This feature request has been rejected in favor of #8440
- 05:51 PM bug #8440 (Closed): specimen accession numbers link to specimen page
- The specimen accession numbers, aka specimen labels, should be clickable links to the specimen page.
This is neede... - 05:29 PM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- So we definetely should write tests before closing.
- 05:27 PM task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Have you tested with termType = Character which is a subtype for Feature. I don't think the "Restrictions" implementa...
- 11:19 AM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- please can you review my changes?
- 05:11 PM feature request #8439 (New): Improve Layout of Registration in Name page and Search page
- Improve Layout of Registration in Name page and Search page.
Example http://phycobank.org/100628
![](picture013-1.... - 12:01 PM task #8438 (Closed): remove featureTree/* web services in August 2021 if they are unused
- If the featureTree/* web services are no longer used since 2 years we can safely remove them.
Check the cdm-server... - 11:56 AM task #8434 (Closed): Change FeatureTree contollers to TermTree controllers
- 11:55 AM task #8166 (Resolved): Adapt dataportal to term structure changes
- check taxon profile settings in a couple of test portals:
* Cichorieae
* Corvidea
* Palmweb
* Cyprus - 11:18 AM task #8436 (Resolved): featureTree/* services should filter the termTrees by the TermType Feature
- Applied in changeset commit:cdmlib|0f5323457637b6f2214287eb3101c7db121540f5.
08/01/2019
- 02:59 PM task #8437 (In Progress): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- implemented but no tests yet, but maybe you can integrate into controller already
- 12:26 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- e.g.:
~~~java
public List<TermTree> list(TermType termType, Integer limit, Integer start, List<OrderHint> orde... - 01:23 PM bug #8385 (In Progress): Open issues in DB preferences
- 12:23 PM task #8436 (Closed): featureTree/* services should filter the termTrees by the TermType Feature
- Die featureTree/* Service-Endpunkte sollte selbe Verhalten anzubieten wie zuvor (#8434). In diesem Fall sollte hinter...
- 11:36 AM task #8435 (New): Reduce logging amount of exports and other long running tasks
- One single CDMLight export of the euromed database produces 49173 lines of logging like :
~~~
[euromed] 2019-07-3... - 09:08 AM feature request #7510 (Worksforme): Allow entering aggregated/statistical data for single specimens in character matrix
- Entering statistical information is possible if the Feature/Character is defined to allow that.
The data is then e... - 08:28 AM task #8434 (Closed): Change FeatureTree contollers to TermTree controllers
- The `FeatureTree` contollers need to be adapted to the changes which have been applied for #6794:
* rename Featur...
07/31/2019
- 04:03 PM feature request #8432 (In Progress): Improve "default" feature tree handling
- 12:58 PM feature request #8432 (In Progress): Improve "default" feature tree handling
- Definitions:
* **default feature tree** = term tree of type feature which holds all features in the database in a... - 03:41 PM feature request #8433 (Duplicate): Disallow user names with whitespace
- Allow only certain letter like [a-z][A-Z]_. Other usernames are errorprone.
Same for group names. - 03:20 PM bug #6523: Correct display of misspellings in synonymy
- Walter:
Also, erstmal, „orthographic variant“ gibt es anscheinend nur in der Botanik s.l.
Folgende Aussagen im C... - 03:06 PM task #8405 (Rejected): Adapt cdm-vaadin to term structure changes
- I deed, there is nothing to do about this in the cdm-vaadin project.
- 03:01 PM task #8406 (Resolved): specimens and occurrence code cleaning and harmonization
- Hi Katja,
can you please have a look if everything is as it was intended? - 02:58 PM bug #8395 (Closed): NullPointerException (NPE) in NameCatalogueController
- This is fully solved.
- 02:57 PM task #8414 (In Progress): occurrence controller code cleaning and harmonization
- 02:32 PM bug #8426 (Closed): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- findFirst() will returns an Optional describing the first element of this stream, or an empty Optional if the stream ...
- 01:56 PM bug #8431 (In Progress): missing status bar for cdm light export
- 10:23 AM bug #8431 (In Progress): missing status bar for cdm light export
- mail from AM:
beim Export von E+M via CDM light wird bei mir seltsamer Weise keine Statusbar angezeigt, die Prozen... - 10:33 AM feature request #8299 (Resolved): add typification column to scientific name and homotypical group in cdm light
- Applied in changeset commit:cdmlib|e05bda1e6ca35dfb77dba833f34203525024a9cb.
- 10:27 AM feature request #8344 (Resolved): Cdm light export: add dummy line in simple facts table
- this is already implemented.
- 10:26 AM feature request #8322 (Resolved): add sortindex to cdm light export
- yes it is already implemented, please review
- 09:04 AM bug #8430: maps zoom to wrong bbox with some layers
- This should now be fixed for all situations. Could you please take a second look?
- 08:45 AM bug #8430 (Resolved): maps zoom to wrong bbox with some layers
- Applied in changeset commit:cdm-dataportal|779840f48519040a2ab59db5b7881ef0a265d6a8.
- 08:43 AM bug #8430 (Closed): maps zoom to wrong bbox with some layers
- This problem has been fixed for `POINT` maps (#8347) but is not yet fully solved for `AREA` maps.
`openlayers_map....
07/30/2019
- 09:53 PM bug #8429: Rename DeterminationEvent_Reference.setOfReferences_id
- The reason is that the references are called setOfReferences while the getter is getReferences.
Simplest solution:... - 05:25 PM bug #8429 (Closed): Rename DeterminationEvent_Reference.setOfReferences_id
- ~~~
[algaterra_new] 2019-07-30 15:49:23,008 INFO [qtp532445947-4997] [eu.etaxonomy.cdm.remote.controller.BaseControl... - 09:43 PM bug #8426: IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- isn't this very easy to fix? Therefore I put it to 5.9 (and also tried to fix in the meanwhile).
Open question: do... - 09:40 PM bug #8426 (Resolved): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- Applied in changeset commit:cdmlib|6b0f8cdfe1643a96638e02dbd924ffd0007785f8.
- 05:09 PM bug #8426 (Closed): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
IndexOutOfBoundsException during serialization of RegistrationWorkingSet:
~~~
[flora-central-africa] 2019-07-...- 05:19 PM bug #8428 (Closed): NPE in ClassificationServiceImpl.loadTreeBranchToTaxon()
~~~
[euromed] 2019-07-30 16:07:08,780 INFO [qtp532445947-5019] [eu.etaxonomy.cdm.remote.controller.ClassificationP...- 05:11 PM bug #8427 (Closed): LazyInitializationException in NameController.doGetTaggedFullTitle()
- found in production server log:
* /cichorieae/name/ddf9cc53-cdfc-45d5-98f9-1e5ef9a8e4df/taggedFullTitle
* /cichor... - 03:27 PM feature request #8403: name page: show types specimens as expandable derivate tree
- please see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/f5048e6e-303a-41f6-933b-84c678e...
- 11:35 AM feature request #8403 (Resolved): name page: show types specimens as expandable derivate tree
- 03:16 PM task #8425 (Closed): FieldUnitDTO: remove taxonRelatedDerivedUnits
- FieldUnitDTO has the field `taxonRelatedDerivedUnits`. This can be removed, this is a relict of a first approach to ...
- 03:12 PM task #8424 (New): evaluate publish flags in the full derivative path
- eu.etaxonomy.cdm.remote.controller.OccurrenceController.doGetOccurencesDTO(@PathVariable(value="uuid") UUID uuid, Htt...
- 03:01 PM bug #8423 (Closed): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection<FieldUnitDTO> fieldUnits, HashMap<UUID,...
- 02:53 PM bug #8422 (In Progress): Make PolytomousKeyGenerator work (correctly)
- 02:53 PM bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
- 02:25 PM task #8406 (In Progress): specimens and occurrence code cleaning and harmonization
- 02:15 PM bug #8385: Open issues in DB preferences
- Passing the ticket back to Katja. We may have a look on it together, though.
- 02:14 PM feature request #8238: Allow interoperability between term trees
- Does not have to be solved in this milestone -> move to 5.10
- 01:52 PM feature request #8415 (Closed): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval
- 01:52 PM feature request #8415 (Resolved): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval
- Applied in changeset commit:cdm-dataportal|dfbc27b033a2eda86d74b57a4d14189f7d6e5cd0.
- 01:48 PM feature request #8390 (Closed): implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
- 01:07 PM task #8414: occurrence controller code cleaning and harmonization
- http://test.e-taxonomy.eu/dataportal/preview/algaterra-new/cdm_dataportal/taxon/c3350592-db9d-44cb-80ed-29bfb685e3a0/...
- 11:35 AM bug #8421 (Rejected): icons in compose_specimen_table_top_down() are not visible
- in `compose_specimen_table_top_down()` font awesome icons are added to the render array, but these are not getting di...
- 11:28 AM task #8420 (Closed): improve admin settings for specimens representations
- * The kind of representation of specimens lists needs to be selectable via a set of radio buttons.
* should the sett... - 11:25 AM task #8419 (In Progress): Harmonization of the different specimen representations
- **There are different kinds of "views" for specimens lists**
* some of them provide a pager others do not
* do op... - 11:21 AM task #8418 (Closed): specimens and occurrence links must not have a target=_blank attribute
- 11:01 AM task #8418 (Closed): specimens and occurrence links must not have a target=_blank attribute
- Even is this was frequently requested by users using the target attribute is in general considered an UX anti-pattern...
- 10:14 AM bug #8417 (New): LazyInitializationException in TermDTO for media
- Im TaxonRelationshipsDTOTest, der ein einfacher UnitTest ist kommt es zu Problemen wegen der media die neuerdings an ...
- 09:20 AM feature request #8412 (In Progress): Remaining issues for cdm light export (II)
07/29/2019
- 02:13 PM bug #8416 (Worksforme): Array to string conversion problem in render array produced for specimen page
- At least the specimen page for (B B GT 0024094) in phycobank ( http://edit.test/d7/phycobank/cdm_dataportal/occurrenc...
- 02:04 PM feature request #8415 (Closed): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval
- copied from #6380.
This webservice should be used to speed up `type_designations_for_synonymy_group($synonymy_grou... - 01:59 PM task #8414 (Closed): occurrence controller code cleaning and harmonization
- eu.etaxonomy.cdm.remote.controller.OccurrenceController.doGetOccurencesDTO(@PathVariable(value="uuid") UUID uuid, Htt...
- 12:36 PM feature request #8413 (New): Abcd import with file containing list of unit ids
- For a bulk import it is necessary to have the possibility to import all specimen of a list of unit IDs
- 10:36 AM bug #6627 (Resolved): Remaining cdm light issues
- created a new "remaining issues" ticket and close this one
- 10:35 AM feature request #8412 (In Progress): Remaining issues for cdm light export (II)
- * Instance name and instance ID
* Discuss whether we should handle the citation facts separate to the other simple... - 10:29 AM feature request #8411 (New): additional requirements for export/import path selection
- mail from w.b.
Hallo,
ein nice to have, wohl vor allem für Leute die nicht ständig in einer Datenbank arbeiten, ...
07/26/2019
- 05:53 PM feature request #8410 (Closed): Add nomenclatural code edition to ruleConsidered in TaxEditor
- for nomenclatural status, name relation (and hybrid relation once it exists).
Make the field only available if rul... - 03:14 PM feature request #8334 (Resolved): Move sources for type designations to details view
- 02:51 PM feature request #8135 (Resolved): Implement verbatim type information in TaxEditor
- 02:38 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Andreas Müller wrote:
> To me there seems to be a misunderstanding. My understanding of #8365#note-8 is that is fine... - 02:19 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- One last question: is the original task of the ticket to deduplicate collection code if necessary now implemented in ...
- 02:13 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- To me there seems to be a misunderstanding. My understanding of #8365#note-8 is that is fine to have brackets for typ...
- 01:58 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Andreas Kohlbecker wrote:
> Users frequently enter the collection code with the accession number which can cause to ... - 01:50 PM feature request #8180 (In Progress): Add property term "Presence/Absence" to CDM default terms
- As the current solution works for additivity maybe we should postpone creating the two new terms until the above ques...
- 01:46 PM feature request #8180: Add property term "Presence/Absence" to CDM default terms
- Query for above request:
~~~sql
SELECT REPLACE (uri, 'https://terms.tdwg.org/wiki/ft:','')
FROM DefinedTermBase... - 01:31 PM feature request #8180: Add property term "Presence/Absence" to CDM default terms
- Hallo,
ich sehe gerade das folgende Terme doppelt vorkommen in der Ontologie:
"REPLACE (uri, 'https://terms.tdw... - 11:07 AM task #8166: Adapt dataportal to term structure changes
- Yes, we should at least do a string search for "FeatureTree". Also a string search on "FeatureNode".
- 09:27 AM task #8166 (New): Adapt dataportal to term structure changes
- I am reopening this issue since the data portal code even if being fully functional might need to be adapted to the ...
- 08:53 AM task #8166 (Worksforme): Adapt dataportal to term structure changes
- Andreas Müller wrote:
> Are there any changes needed? Currently it looks like most things work (except maybe for the... - 11:06 AM feature request #8238 (In Progress): Allow interoperability between term trees
- 10:57 AM feature request #8409 (Closed): add nomenclatural code select to NameRelationField
- see #8398 for details
- 10:55 AM feature request #8408 (Closed): add nomenclatural code select to NomenclaturalStatusRow
- see #8398 for details
07/25/2019
- 11:13 PM task #8405: Adapt cdm-vaadin to term structure changes
- Are there any changes needed? Vaadin compiles and does not really make use of TermTree(former FeatureTree) so it is m...
- 10:16 AM task #8405 (Rejected): Adapt cdm-vaadin to term structure changes
- the vaadin editor needs to be adapted to the changes applied in the context of #6794
- 11:10 PM task #8166: Adapt dataportal to term structure changes
- Are there any changes needed? Currently it looks like most things work (except maybe for the Specimen page, is this c...
- 02:54 PM task #8336 (Duplicate): Unignore FeatureTest
- 02:50 PM bug #8407 (New): Fix "FeatureTest"
- Fix "FeatureTest" (or may now TermTreeTest) which checks the correkt behavior for exporting (and importing?) TermTree...
- 01:16 PM task #8406 (Closed): specimens and occurrence code cleaning and harmonization
- ## cdmlib-remote
issues copied to #8414
## data portal
* There are different kinds of "views" on specimens l... - 10:13 AM bug #8395 (Resolved): NullPointerException (NPE) in NameCatalogueController
- Applied in changeset commit:cdmlib|dd4347b628d5737e2682c8d95fcb0e1aff9e7ad7.
07/24/2019
- 07:50 PM feature request #8404 (Resolved): Add update step list within updaters
- 04:23 PM feature request #8404 (Closed): Add update step list within updaters
- currently it is needed to add the step externaly to the step list which leads to errors and requires unnecessary code
- 07:50 PM feature request #8281 (Resolved): Doubtful flag for TaxonNode
- still need to update E+M data
- 07:49 PM bug #4884 (Resolved): Update Reference_AUD.refType to allow NULL
- 07:48 PM feature request #8398 (Resolved): Add nomenclatural code edition to ruleConsidered
- Applied in changeset commit:cdmlib|3b49c84a0287d1f78acb49ff1270a38c679cfd3a.
- 02:56 PM feature request #8402 (Closed): ordering typedesignations in name and taxon page
- 02:56 PM feature request #8402 (Resolved): ordering typedesignations in name and taxon page
- Applied in changeset commit:cdm-dataportal|fb939fdc818762b23215321ff183be8700e88161.
- 12:18 PM task #8363 (Worksforme): PESI SOAP service seems to return duplicate records
- It turned out that the duplicates are not in the PESI response but that they an effect of an error in the downstram p...
- 12:02 PM task #8363: PESI SOAP service seems to return duplicate records
- I introduced this while I was working on the ticket overview page for Phycobank: https://dev.e-taxonomy.eu/redmine/pr...
- 10:27 AM task #8363: PESI SOAP service seems to return duplicate records
- Interesting that the UTIS project has a category utis ;-)
07/23/2019
- 06:03 PM feature request #8403 (Rejected): name page: show types specimens as expandable derivate tree
- In the name page, type specimens used in type designations should be expandable like in the taxon page
- 05:58 PM feature request #8402 (Closed): ordering typedesignations in name and taxon page
- The typedesignation in the name and taxon page are not yet well ordered. The sort order should follow the order of th...
- 04:39 PM bug #6523: Correct display of misspellings in synonymy
- Guten Morgen,
ich bin hinsichtlich einer endgültigen Lösung leidenschaftslos und kann nicht mit eigenen Vorschläg... - 04:15 PM bug #8400 (Closed): scientific names in Aphia client responses are missing authors citation
- 03:49 PM bug #8400 (Closed): scientific names in Aphia client responses are missing authors citation
- 04:14 PM bug #8401 (Closed): WoRMS client returns synonym for accepted name
- 04:14 PM bug #8401 (Resolved): WoRMS client returns synonym for accepted name
- Applied in changeset commit:utis-core|b2cf9c25798fa510b3eda5b8d77630e1da1e9072.
- 03:58 PM bug #8401 (Closed): WoRMS client returns synonym for accepted name
- 04:12 PM feature request #8355 (Closed): implement client adapter for phycobank
- 04:09 PM feature request #8360 (Worksforme): paging results of /classification/{taxonId}/children webservice
- this has been solved in bug #6151
- 04:06 PM bug #6151 (Closed): implement pager for search service
- 03:33 PM feature request #7975: Implement a block to display name relations
- Andreas Kohlbecker wrote:
> In the developer standup today we almost already decided for adding an enumeration field... - 03:31 PM bug #8399 (New): show nomenclatural code edition for NameRelationship and NomenclaturalStatus
- see #7975#note-31 for details
- 01:27 PM feature request #8398 (Closed): Add nomenclatural code edition to ruleConsidered
- copied from #7975#note-31 :
"... adding an enumeration field to NameRelationship and to NomenclaturalStatus to al... - 01:20 PM feature request #6794 (In Progress): Improve term structure
- 11:27 AM feature request #8396 (New): make "not in classification warning" configurable
once completed remove
~~~css
.messages--warning {
display: none;
}
~~~
from phycobank portal- 11:24 AM task #8392: Types in PhycoBank
- the type status in the name page should be bold but
~~~css
.node-cdm-name .typeDesignations .status {
font-wei...
07/22/2019
- 03:23 PM bug #8395 (Closed): NullPointerException (NPE) in NameCatalogueController
- This NPE problem currently breaks searching for "Planothidium" in phycobank via UTIS
~~~
Caused by: java.lang.Nu... - 03:19 PM feature request #8394 (New): org.cybertaxonomy.utis.tnr.msg.TaxonName add URL field
- For phycobank and other name focused data providers it is crucial that the name url and identifier can be transported...
- 02:42 PM feature request #8180 (Feedback): Add property term "Presence/Absence" to CDM default terms
- 08:28 AM feature request #8390 (In Progress): implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
- 08:05 AM bug #8393 (New): restarting utis-webapp causes OverlappingFileLockException
- This happens after changing the last updated timestamp of the '/etc/jetty8/contexts/eubon-utis-1.3.xml'
~~~
java.... - 07:48 AM bug #8340 (New): is accepted for Footnotes missing and with wrong index
- I think there is nothing to do about this ticket as long #8339 is not decided by 100%.
07/19/2019
- 04:38 PM bug #8340: is accepted for Footnotes missing and with wrong index
- Don't know what kind of feedback is needed from my side?
- 04:27 PM feature request #8134: Implement verbatim type information in dataportal
- related to issues in 5.9 so maybe we can implement it then
- 04:13 PM feature request #8354: taxonomic registration search by name finds also typifications for this name
- correct!
- 03:53 PM feature request #8354: taxonomic registration search by name finds also typifications for this name
- to me seems to be a cdmlib ticket, not cdm
- 04:12 PM task #7296: externalize redmine api key
- it is! The changes have been made in `cdmlib-ext/src/test/resources/services-external.properties`
- 03:55 PM task #7296: externalize redmine api key
- this is not a cdm ticket, please change category if cdmlib is also not correct
- 03:27 PM bug #6627 (Feedback): Remaining cdm light issues
- should we close this ticket and create a new remaining (II) ticket with the now open issues.
Most of the tasks hav... - 03:13 PM feature request #8273 (Feedback): abcd import: check for all specimen for DNA in DNABank
- Is this already implemented? It has a commit.
- 03:11 PM feature request #8322 (Feedback): add sortindex to cdm light export
- Isn't this already implemented. Review?
- 03:08 PM bug #8088 (Feedback): Open taxon node wizard issues
- can we close this and create a new ticket with open issues? There are already several commits on this ticket.
Let me... - 03:07 PM feature request #8182: show blast search result
- is this ready or should we create ticket for open issues?
- 03:04 PM feature request #8388 (Closed): UTIS search block
- completed
- 03:04 PM feature request #8344 (In Progress): Cdm light export: add dummy line in simple facts table
- is this fixed already? Please move to 5.10 if not
- 02:58 PM bug #8313: Multiple categorical data get deleted when clicked on in Character Matrix
- Move back to 5.8 as this seems to be ready in 5.8 milestone
- 02:19 PM task #8392 (Worksforme): Types in PhycoBank
- >This layout is okay except of the dot at the end. If special types are concatenated ".;" should be avoided.
This ... - 02:16 PM task #8391 (In Progress): Name page shows complete name information (II)
- 02:11 PM task #8391 (In Progress): Name page shows complete name information (II)
- Continue #8108:
Remaining issues:
2. Inhaltlich sollten folgende Angaben zu sehen sein:
* ~~Taxa~~
... - 02:13 PM feature request #8108 (Resolved): Name page shows complete name information (I)
- copied remaining issues to new ticket to review and close this ticket for current milestone.
- 01:43 PM bug #6523 (In Progress): Correct display of misspellings in synonymy
- 10:55 AM bug #6523: Correct display of misspellings in synonymy
- @Walter: could you please check if Nepenthes tupmanniana is really meant to be a misspelling or is it rather a homony...
- 10:53 AM bug #6523: Correct display of misspellings in synonymy
- Hallo,
danke Henning für die Hinweise. Ich nehme mal einige weitere Leute mit ins Ticket, da dies sowohl von allge... - 11:40 AM feature request #8304: Name page redirects to according taxon depending on query parameter
- I don't think that these requirements are contradict the current implementation with the 'global' switch. As far as I...
- 11:30 AM feature request #8304: Name page redirects to according taxon depending on query parameter
- As far as I remember there is already a user request for this. At least I have discussed it with users.
Also I thin... - 09:31 AM bug #6380 (Closed): typedesignations missing in homotypic group
- 09:30 AM bug #6380: typedesignations missing in homotypic group
- Andreas Müller wrote:
> Until then why can't we use a ws call that collects all type designations of a single name i... - 09:08 AM bug #6380: typedesignations missing in homotypic group
- Until then why can't we use a ws call that collects all type designations of a single name in the homotypic group for...
- 08:49 AM bug #6380: typedesignations missing in homotypic group
- Andreas Müller wrote:
> The result seems to be correct. Do I understand the code correctly that you only call 1 webs... - 08:04 AM bug #6380 (Feedback): typedesignations missing in homotypic group
- The result seems to be correct. Do I understand the code correctly that you only call 1 webservice per homotypical gr...
- 09:29 AM feature request #8390 (Closed): implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
- copied from #6380.
This webservice should be used to speed up `type_designations_for_synonymy_group($synonymy_grou... - 09:13 AM feature request #7932: Implement subject resolver for CdmPreferences
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Andreas K., do you already use the subject resolver in the pr... - 08:32 AM feature request #7932: Implement subject resolver for CdmPreferences
- Andreas Müller wrote:
> Andreas K., do you already use the subject resolver in the preference cache you use for vaad... - 09:11 AM task #4177 (Closed): display of name relationships in synonymy broken
- 08:33 AM task #4177 (Feedback): display of name relationships in synonymy broken
- So if this ticket is not about the comments in #note-3 and #note-4 but only about repairing and optimizing the name r...
07/18/2019
- 08:49 PM feature request #7920: Possibility to define area specific status selection
- An open issue is that it should also be available for local prefs (where it is maybe more difficult to implement beca...
- 06:40 PM feature request #7920 (Feedback): Possibility to define area specific status selection
- To me this looks like being solved including the open issues. Please check and move open issues to a new ticket if ne...
- 08:46 PM feature request #8045: Improve handling of default values and override in local preferences
- with the new implementation of distribution status with different subjects if allowOverride=false in DB prefs this do...
- 08:04 PM feature request #8045: Improve handling of default values and override in local preferences
- For the above issues see also #8323#note-4
- 04:21 PM feature request #8045: Improve handling of default values and override in local preferences
- Andreas Müller wrote:
> Choosing "default" for local preference "nomenclatural status" has no effect. It uses the ex... - 01:26 PM feature request #8045: Improve handling of default values and override in local preferences
- For nomencl.Code. implementation is still missing or incorrect. Also we may discuss if in DB prefs we should allow "U...
- 01:09 PM feature request #8045: Improve handling of default values and override in local preferences
- Choosing "default" for local preference "nomenclatural status" has no effect. It uses the explicitly chosen values fr...
- 01:06 PM feature request #8045 (Feedback): Improve handling of default values and override in local preferences
- Looks like this has been implemented in 5.8 so I switch milestone.
Are there open issues? - 08:30 PM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
- It looks like currently the preferences are deleted no matter what the allowOverride value is. But if it is "false" s...
- 08:10 PM bug #8385: Open issues in DB preferences
- the above both fixes seem to work (though the last is only a workaround for a real fix (full delete of the preference))
- 05:55 PM bug #8385: Open issues in DB preferences
- Patrick Plitzner wrote:
> Wouldn't it be better to just delete the preference if the config is `null`. `null` means... - 05:54 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> >io.ABCD.config is stored in DB with value NULL even if nothing has changed, if this is defa... - 04:33 PM bug #8385: Open issues in DB preferences
- >io.ABCD.config is stored in DB with value NULL even if nothing has changed, if this is default value, the default sh...
- 01:45 PM bug #8385: Open issues in DB preferences
- After setting Publish Flag to default and reopening:
~~~
login : admin
editor version : 5.8.0.201907180811
serv... - 01:39 PM bug #8385: Open issues in DB preferences
- Patrick, can you have a look?
- 01:34 PM bug #8385 (Closed): Open issues in DB preferences
- * ~~Values on General page (Export/Import, Checklist perspective, Taxonnode Wizard) are not loaded correctly when reo...
- 07:54 PM feature request #8256: Show all status preferences as table
- CRITICAL:
Updating an existing list does not seem to work anymore. If I update and reopen the dialog everything is... - 07:04 PM feature request #8256 (Feedback): Show all status preferences as table
- By the way: if no area is selected the subject is /taxeditor which does not make much sense. It should be only "/". A...
- 06:53 PM feature request #8256: Show all status preferences as table
- In general this seems to work and is a great feature. Some minor issues: the table should show up below the status se...
- 07:32 PM feature request #8323: Make nom.status and rank lists a CdmPreference
- If I open a name which has a rank that is not available in the rank list, the rank is added to the list of available ...
- 07:29 PM feature request #8323: Make nom.status and rank lists a CdmPreference
- Also the prefs seem to work only after restarting TaxEditor. Maybe this is the main reason for the above mentioned is...
- 07:11 PM feature request #8323 (Feedback): Make nom.status and rank lists a CdmPreference
- Override handling does not yet work correctly for both of them. See #8045#note-9 and #8045#note-13
- 06:32 PM feature request #8058: Further issues for (local) preferences
- Maybe we should split this ticket.
- 05:45 PM feature request #8058 (Feedback): Further issues for (local) preferences
- Katja Luther wrote:
> the common name language preference is added.
Can we still move "Available Languages" below... - 06:31 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- Beside these issues the implementation works correctly as it looks like. This gives more consistency to data and UI.
- 06:30 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- Is there a reason why if used in distribution editor, the Status field and the modifying text field in details view i...
- 06:27 PM feature request #8293 (Feedback): Distribution preferences for details view should be serverside preferences
- 06:27 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- The preference menu is not correct. You put it to UI-DistributionData-VocsAndStatus
UI is only for UI! (as the nam... - 06:13 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- The fix seems to work. Katja, can you please check, why empty strings are possible here. It is a bit strange. In the ...
- 05:27 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- Andreas Müller wrote:
> This error is a blocker!!
I tried to fix with 955fadf4. Will see if it works
- 05:12 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- This error is a blocker!!
- 05:11 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- When trying to edit a distribution in facts view I get an IAE:
~~~
login : admin
editor version : 5.8.0.20190718... - 06:04 PM feature request #8383 (Closed): Add CORS header
- 05:53 PM feature request #8383 (Resolved): Add CORS header
- Applied in changeset commit:utis-webapp|c16dc4758af86cb502dfc7f6687fdc4c8c5c5c4a.
- 11:12 AM feature request #8383 (Closed): Add CORS header
- 05:45 PM feature request #8388 (Resolved): UTIS search block
- Applied in changeset commit:cdm-dataportal|c05d1cfbddb1d4e5942efc85201405814a0f9a22.
- 05:44 PM feature request #8388 (Closed): UTIS search block
- implement a Drupal block which allows using the UTIS service
- 04:20 PM bug #8375: ReferenceEllypsisFormatter produces too long strings in specific cases
- Problem: long book titles, especially if the reference is part of book.
Example longest in book - reference
![]... - 04:19 PM feature request #7932: Implement subject resolver for CdmPreferences
- Andreas K., do you already use the subject resolver in the preference cache you use for vaadin?
- 04:18 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- To me this ticket seems to be fixed and open issues are moved to new tickets. In general the structure for handling d...
- 03:54 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> On local prefs Name Details View page the "Restore Defaults" button seems to be enabled even... - 03:52 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> With empty preferences when only the DistrEditor page is opened without any change afterward... - 03:05 PM bug #8386 (Closed): Disable admin menu when not logged into a DB
- currently it is shown after (re)start which does not make sense as admin functionality is always related to DB login.
- 01:14 PM feature request #8384 (New): Consider to use icon links for all reference citations
- Candidates:
* Bibliography - 01:13 PM feature request #8320 (Closed): Links to reference page as appendend icon instead of having the whole citation as link
- Andreas Müller wrote:
> Do we have any rules where these icons are used? E.g. in the bibliography they do not seem t... - 12:39 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- Do we have any rules where these icons are used? E.g. in the bibliography they do not seem to be used yet though it m...
- 12:37 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- Andreas Kohlbecker wrote:
> And this one
>
> http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_datapor... - 08:13 AM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- And this one
http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/a67fc2ab-1452-4c32-84b6... - 08:05 AM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/c246856f-c03e-4cb7-ac92-d9b2864084cd
... - 12:51 PM feature request #8294 (Closed): Make display of ID in source and ID Namespace configurable
- translated preferences. Closing the ticket.
- 12:12 PM feature request #8294 (Feedback): Make display of ID in source and ID Namespace configurable
- All the rest seems to work and looks ok.
- 12:08 PM feature request #8294: Make display of ID in source and ID Namespace configurable
- same in local preference (if this is different code)
- 12:06 PM feature request #8294: Make display of ID in source and ID Namespace configurable
- Server side preferences are not yet translated (Submenu Sources and Labels on page) (update code before changing as ...
- 11:31 AM bug #8260 (Closed): Details and Supplemental Data View do not save the expansion state of sections
- 10:41 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
- Fix 20b35d99 seems to solve the problem. I think we can close the ticket.
- 10:55 AM bug #8129: Load images asynchronously in media details view
- Andreas Müller wrote:
>...
> * the size of the image is recomputed, most often the size can be computed from metada... - 10:52 AM bug #8129: Load images asynchronously in media details view
- Andreas Müller wrote:
> Also when switing between 2 entries in bulk editor with <2sec between switches often the ent... - 10:46 AM bug #8129: Load images asynchronously in media details view
- The expand problem seems to be solved (see #8260). Final question: what is the default. I suggest to have "expanded" ...
- 12:51 AM bug #8129: Load images asynchronously in media details view
- Please test intensively e.g. with the 2 given media if the behavior is as you would expect for rapid data entry and c...
- 12:50 AM bug #8129: Load images asynchronously in media details view
- The loading does not stop immediately when a new URL is entered but should. Otherwise an image is shown which does no...
- 12:48 AM bug #8129: Load images asynchronously in media details view
- Andreas Müller wrote:
> Also when switing between 2 entries in bulk editor with <2sec between switches often the ent... - 12:44 AM bug #8129: Load images asynchronously in media details view
- Also when switing between 2 entries in bulk editor with <2sec between switches often the entries are not selected any...
- 12:42 AM bug #8129: Load images asynchronously in media details view
- Hmm, sometimes it works but most often it does not. Looks like you have at least to open a new bulk editor to make it...
- 12:07 AM bug #8129: Load images asynchronously in media details view
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Now, the media details view is always collpased and the state i... - 10:42 AM bug #8374: Save genus generated for a species with a different reference
- Problem with bibliographic reference Part of Book.
![](picture938-1.png)
![](picture938-2.png)
hint: Book titel co... - 10:34 AM bug #6523: Correct display of misspellings in synonymy
- Als unbeteiligter Leser halte ich die Ausgabe für sachlich falsch oder zumindes für unverständlich. Erst mit externer...
- 08:16 AM bug #8287 (Closed): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
- 08:13 AM feature request #8304: Name page redirects to according taxon depending on query parameter
- This is a misunderstanding. During the standup yesterday I was talking about a global switch which overrides the defa...
07/17/2019
- 08:54 PM feature request #7408 (In Progress): [E+M] Support for preferred common names in data portal
- we may discuss, if we simply use different features for th different common names. Therefore I take this ticket and a...
- 07:28 PM bug #8287: RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
- combination of types and none are searchable without errors in Vaadin and the portal. If this is the feedback for thi...
- 07:12 PM bug #8231 (Worksforme): Name relation non
- 07:07 PM task #5857 (Closed): show nomenclatural status for for representations of TaxonName
- 06:56 PM bug #8365 (Closed): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- ok, so i am closing this issue now
- 05:22 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- In the Youngia example the version with brackets is clearer.
- 09:02 AM bug #8365 (Feedback): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- 09:02 AM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- removing the parentheses would affect all portals. Before doing this we should keep the effect on other portals in mi...
- 06:45 PM feature request #8294 (Resolved): Make display of ID in source and ID Namespace configurable
- All issues should be fixed now.
What still would be nice is if the disabled local preferences would reflect the st... - 06:45 PM bug #8382 (Closed): Local Supplemental Data Source Preferences should reflect the state of admin preferences
- Copied from #8294:
"What still would be nice is if the disabled local preferences would reflect the state of the a... - 06:07 PM task #8209: use ellypsed references for all reference comboboxes
- last screen shot was misuse of an in-reference
- 06:06 PM task #8209: use ellypsed references for all reference comboboxes
- Minor problem,
Name editor if a new bibliographic reference is entered with a very long title.
![](picture115-1.png) - 05:40 PM task #8209: use ellypsed references for all reference comboboxes
- Name Editor with "Nomenclatural reference" is working. No problem because the maximum breadth of the drop down is siz...
- 07:58 AM task #8209: use ellypsed references for all reference comboboxes
- I copied the latest problem to a new ticket: #8375
Did you check all editors with reference comboboxes? Is ellypsi... - 05:59 PM bug #8381 (Closed): Closing the details view throws widget is disposed exception
- steps to reproduce:
1. Open editor
1. Connect
1. Open a taxon
1. Close details view
Note: The exception is n... - 05:45 PM feature request #8245 (Closed): Improve representation of DescriptionElementBase.timeperiod
- The formatting of year only or year and month only looks ok now so we can close the ticket. Other open issues will be...
- 05:45 PM bug #8375: ReferenceEllypsisFormatter produces too long strings in specific cases
- Die bibliographische Referenz (Journal) wird hier nicht abgekürzt. Je kürzer der Journal title desto eher Verwechselu...
- 08:04 AM bug #8375: ReferenceEllypsisFormatter produces too long strings in specific cases
- This could an effect of the changes which have been applied for #8375
- 07:55 AM bug #8375 (New): ReferenceEllypsisFormatter produces too long strings in specific cases
- Again there are extremely long entries. The breadth of the dropdown box differs extremly. (was originally reported in...
- 05:27 PM feature request #8304 (Feedback): Name page redirects to according taxon depending on query parameter
- I do not fully understand this solution. I thought it should be configurable for each location that has a link to a n...
- 05:14 PM feature request #8320 (Feedback): Links to reference page as appendend icon instead of having the whole citation as link
- Is there an example somewhere on test server or integration?
- 05:06 PM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
- Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > Now, nomenclatural reference is ne... - 04:33 PM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Now, nomenclatural reference is never expanded. Maybe it was li... - 11:03 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
- Andreas Müller wrote:
> Now, nomenclatural reference is never expanded. Maybe it was like this before already and I ... - 04:58 PM bug #8129: Load images asynchronously in media details view
- Andreas Müller wrote:
> Now, the media details view is always collpased and the state is not saved - at least if I c... - 04:43 PM bug #8129 (Feedback): Load images asynchronously in media details view
- Now, the media details view is always collpased and the state is not saved - at least if I choose the above mentioned...
- 10:36 AM bug #8129 (Resolved): Load images asynchronously in media details view
- Implemented asynchronous loading in advanced media view.
Opened another ticket for placeholder image -> #8378 - 04:56 PM feature request #8283 (Closed): Allow adding media to terms in taxeditor
- Created new ticket for remaining issues -> #8380
- 04:31 PM feature request #8283: Allow adding media to terms in taxeditor
- Patrick Plitzner wrote:
> Just when I wrote the last comment it happened. But still, it is very unlikely that this w... - 10:56 AM feature request #8283: Allow adding media to terms in taxeditor
- Just when I wrote the last comment it happened. But still, it is very unlikely that this will happen to a user. We ma...
- 10:51 AM feature request #8283: Allow adding media to terms in taxeditor
- Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > The data may got lost the followin... - 04:56 PM bug #8380 (New): Unsaved media gets lost in details view
- Copied from #8283:
On rem_conf_am open features.
* Got to Vocabulary "Untitled" and open term "test2".
* Open ... - 11:49 AM bug #8368 (Closed): problems in compose_cdm_specimen_or_observation_tree_entry()
- error message suppressed and visible effect of the problem solved, the further discussion and post release review tas...
- 11:47 AM bug #8370 (Closed): feature blocks created by compose_description_element_individuals_association() are broken
- problem solved discussion and post release review task copied to #8379
- 11:47 AM feature request #8135 (New): Implement verbatim type information in TaxEditor
- temporary disabled textual type designation and moved to 5.9 milestone where the necessary model changes will be impl...
- 11:46 AM task #8379 (Closed): Review strange specimen implementations
- Please
* #8368
* #8370
I am repeating according comments from the original tickets here:
----
# #8370
... - 10:19 AM feature request #8378 (New): Show placeholder for asynchronously loaded images in details view
- 08:44 AM bug #8377 (Closed): TypeDesignationsEditors: Delete must not be allowe before the workingset is saved
- this affects both:
* NameTypeDesignationEditor
* SpecimenTypeDesignationWorkingsetEditor
Im RegistrationWorkli... - 08:39 AM bug #8376 (Closed): RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting of a popup editor has been triggered
- 08:10 AM bug #7845 (Closed): NamePopupEditor new Genus button should clear the genus name field in the new editor
- 08:08 AM feature request #8284 (Closed): starting a registration for an existing name causes the name editor to pop up in read only mode
- 07:49 AM feature request #7966 (Closed): Registration search simplify type select options
- 07:48 AM feature request #8306 (Closed): Registration page links to registered taxon name
07/16/2019
- 07:58 PM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
- OK, now I at least understand what it is used for. However, I doubt (but am not sure) that this is still needed. Mayb...
- 06:57 PM feature request #8306: Registration page links to registered taxon name
- fine, ticket can be closed.
- 06:54 PM feature request #7966: Registration search simplify type select options
- Lectotype gives back: Specimen types AND Name types of genera, species and below = correct
Problem fully resolved.... - 06:45 PM feature request #7966: Registration search simplify type select options
- Original designation gives back: Name types of genera = correct
Holotype gives back: Specimen types of species and b... - 06:29 PM task #8209: use ellypsed references for all reference comboboxes
- Again there are extremely long entries. The breadth of the dropdown box differs extremly.
![](picture177-1.png) - 06:18 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Quote
"OK, parentheses are removed again."
The brackets are reinstated not removed but should be removed, see S... - 12:08 PM bug #8365 (Resolved): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- OK, parentheses are removed again.
- 06:11 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Info for Genera without reference:
The chosen name needs to be completed before it can be used. Please add the nome... - 06:09 PM bug #7187 (Closed): ReferenceEditor: saving with DOI casues exception
- 05:46 PM bug #7187: ReferenceEditor: saving with DOI casues exception
- Review fehlte. Feature seit Monaten ohne Beanstandung im Routinebetrieb der Release Version. Ticket kann geschlossen ...
- 06:00 PM bug #7845: NamePopupEditor new Genus button should clear the genus name field in the new editor
- new error: #8374
- 05:56 PM bug #7845: NamePopupEditor new Genus button should clear the genus name field in the new editor
- Ticket can be closed, but "Save" error when an uninominal should be saved.
- 06:00 PM bug #8374 (Duplicate): Save genus generated for a species with a different reference
- Test system:
New species entered. Genus not in list.
Input "new" genus with reference entered. Saving result in a... - 05:56 PM bug #7885 (Worksforme): registration search by name finds also typifications for this name
- this is now obviously working:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration-... - 05:51 PM feature request #8294 (Feedback): Make display of ID in source and ID Namespace configurable
- Patrick, can you try to fix the open issues?
- 05:47 PM feature request #8294: Make display of ID in source and ID Namespace configurable
- yes, it is switched and also in both views it is called "ID in Namespace" but should be "ID Namespace". Also ID Names...
- 05:38 PM feature request #6709 (Closed): Do not show UUID on media page
And now to your last question:
> By the way, why have we removed the possibility to show multiple representation...- 05:35 PM feature request #6709: Do not show UUID on media page
- Andreas Müller wrote:
> By the way, is there a reason why we show the file name below image? Sometimes it is very ug... - 05:30 PM feature request #6709: Do not show UUID on media page
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > e.g.: http://int.e-taxonomy.eu/dataportal/integration/referen... - 02:41 PM feature request #6709 (Feedback): Do not show UUID on media page
- Feel free to create new tickets from the above questions.
- 02:41 PM feature request #6709: Do not show UUID on media page
- Connected with the representation is the question which filename to use different representations have different file...
- 02:39 PM feature request #6709: Do not show UUID on media page
- By the way, why have we removed the possibility to show multiple representations on the media page? It would be nice ...
- 02:35 PM feature request #6709: Do not show UUID on media page
- By the way, is there a reason why we show the file name below image? Sometimes it is very ugly like in the above ment...
- 02:14 PM feature request #6709: Do not show UUID on media page
- Andreas Kohlbecker wrote:
> e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0b... - 05:34 PM feature request #8373 (New): media page: avoid showing ugly file names as title replacement
By the way, is there a reason why we show the file name below image? Sometimes it is very ugly like in the above me...- 05:29 PM feature request #8372 (New): media page: show media type in the page title
- distinguish the different media types an to adapt the title accordingly: Instead of "Media ...", "Image ...", "Video ...
- 05:23 PM bug #8340 (Feedback): is accepted for Footnotes missing and with wrong index
- 05:23 PM bug #8340: is accepted for Footnotes missing and with wrong index
- Andreas Müller wrote:
> I do not really understand the problem. On http://test.e-taxonomy.eu/dataportal/preview/cich... - 02:07 PM bug #8340: is accepted for Footnotes missing and with wrong index
- I do not really understand the problem. On http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/tax...
- 05:22 PM bug #8260 (Feedback): Details and Supplemental Data View do not save the expansion state of sections
- Now, nomenclatural reference is never expanded. Maybe it was like this before already and I simply did not recognize.
- 05:15 PM feature request #8283 (Feedback): Allow adding media to terms in taxeditor
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > The data may got lost the following way.
> >
> > * Open term... - 05:13 PM feature request #6316 (Closed): display source references of media objects in media page
- using ; as separator for multiple sources: commit:cdm-dataportal|c021779a
- 02:55 PM feature request #6316 (Feedback): display source references of media objects in media page
- Generally this works. Only we should replace "," by ";" as separator for multiple sources. The former is often part o...
- 05:03 PM feature request #8245: Improve representation of DescriptionElementBase.timeperiod
- here it is: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/c246856f-c03e-4cb7-ac92-d9...
- 02:59 PM feature request #8245: Improve representation of DescriptionElementBase.timeperiod
- Andreas Kohlbecker wrote:
> done, for testing you can use for example http://edit.test/d7/reference_int/cdm_dataport... - 05:02 PM bug #8371 (New): When creating a new term for a vocabulary the term should have the focus afterwards
- ... maybe even better, the focus should go to the details view label field to allow immediately enter the label for t...
- 05:02 PM bug #8343: potential timezone problem in application stack
- Andreas Müller wrote:
> I don't understand why this is rejected. The problem still exists as you can see in the abov... - 04:47 PM bug #8343: potential timezone problem in application stack
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Maybe this is an issue which comes from the time when the tim... - 03:18 PM bug #8343: potential timezone problem in application stack
- Andreas Kohlbecker wrote:
> Maybe this is an issue which comes from the time when the timezone data was not correctl... - 03:16 PM bug #8343 (Feedback): potential timezone problem in application stack
- I don't understand why this is rejected. The problem still exists as you can see in the above link. It might not be a...
- 04:47 PM bug #8129: Load images asynchronously in media details view
- Also we may want to have a replacement image which shows "loading" or something similar while the image is loading. A...
- 04:44 PM bug #8129 (Feedback): Load images asynchronously in media details view
- It seems to work only in the simple view but not in the advanced view.
As an example use rem_conf_am, bulk editor ... - 04:44 PM bug #8370: feature blocks created by compose_description_element_individuals_association() are broken
- Andreas Müller wrote:
> I think you accidentaly changed back to status "new"
thanx for fixing this Andreas.
@K... - 04:08 PM bug #8370 (Resolved): feature blocks created by compose_description_element_individuals_association() are broken
- I think you accidentaly changed back to status "new"
- 04:04 PM bug #8370 (New): feature blocks created by compose_description_element_individuals_association() are broken
- this bug has been introduced with commit:cdm-dataportal|e89c1115
- 04:03 PM bug #8370 (Resolved): feature blocks created by compose_description_element_individuals_association() are broken
- Applied in changeset commit:cdm-dataportal|43d01429e6dbd2d56970902ad525376f00b699b1.
- 04:00 PM bug #8370 (Closed): feature blocks created by compose_description_element_individuals_association() are broken
- For example Achnanthidium exiguum (Grunow) Czarn. in Algaterra shows multiple errors in the error box:
~~~
Warnin... - 03:20 PM feature request #8320 (Resolved): Links to reference page as appendend icon instead of having the whole citation as link
- 03:17 PM bug #8369 (Closed): SpecimenTypeDesignationDTO can not be serialized to JSON
- 02:19 PM bug #8369 (Closed): SpecimenTypeDesignationDTO can not be serialized to JSON
- SpecimenTypeDesignationDTO is missing getters and setters and thus can not be serialized
- 03:15 PM bug #8368 (Feedback): problems in compose_cdm_specimen_or_observation_tree_entry()
- Katja, please help disentangling the situation.
- 03:13 PM bug #8368: problems in compose_cdm_specimen_or_observation_tree_entry()
- After fixing the problems in this code i noticed that this code is not generating any output at all.
I attempted t... - 02:19 PM bug #8368: problems in compose_cdm_specimen_or_observation_tree_entry()
- working on this issue I found another issue: #8369
- 02:18 PM bug #8368 (In Progress): problems in compose_cdm_specimen_or_observation_tree_entry()
- 12:10 PM bug #8368 (Closed): problems in compose_cdm_specimen_or_observation_tree_entry()
- Hallo Katja,
ich leite das mal an dich weiter, denn es gibt hier ein Problem mit deinem Kode in compose_cdm_speci... - 03:14 PM task #8118: Update MySQL drivers
- Andreas Kohlbecker wrote:
> **The proper solution it the timezone problem is documented at MySqlFaq#The-server-time-... - 12:48 PM feature request #7791 (Closed): Visualize the phycobank higher taxon graph
- No improvements are needed by now
- 12:47 PM bug #8321 (Closed): Namepage shows wrong taxa as related to the name
- Wolf-Henning Kusber wrote:
> Both Eunotia krammeri with different Author teams are not mixed anymore. The described ... - 12:41 PM bug #8278 (Closed): LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator
- closing, since this problem no longer occurred.
- 12:13 PM feature request #8366 (Closed): Same typedesignation display for registration page as in name page
- 12:09 PM feature request #8357 (Closed): implement client adapter for diatom base
07/15/2019
- 04:30 PM bug #8233: [Follow up] Creating type duplicates
- Move to next milestone for 5.8 release
- 04:14 PM bug #8225: Deleting one of two type designations removes both
- Move to next milestone to implement a better solution than the temporary fix.
- 04:02 PM feature request #6849: [DISCUSS] How to handle "kind of" term creation in TermEditor
- Moving to next milestone for further discussion
- 03:58 PM feature request #8135 (Feedback): Implement verbatim type information in TaxEditor
- @Andreas: There was something Walter wanted but I can't remember what it was. Depending on that we may close this tic...
- 03:27 PM task #8130: Check if related feature data is cleared when supported facts type is changed
- Move to next milestone for remaining discussion
- 03:26 PM feature request #8044: Add "Move to..." menu to term editor
- Move to next milestone because this is still considered experimental
- 03:25 PM feature request #8248: Implement OWL import
- Move to next milestone because this is still considered experimental
- 03:24 PM feature request #6774: Implement OWL export
- Move to next milestone because this is still considered experimental
- 03:23 PM feature request #8335 (Resolved): Store character matrix table state as DB preference
- 03:22 PM feature request #8335: Store character matrix table state as DB preference
- Move to next milestone because the character matrix is still considered experimental
- 03:20 PM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
- Move to next milestone because this is still considered experimental
- 03:19 PM feature request #8294: Make display of ID in source and ID Namespace configurable
- Tested on nightly: The admin and local preferences work as expected BUT they seem to be swapped. Also the one prefere...
- 02:36 PM feature request #8283: Allow adding media to terms in taxeditor
- Added #8367 for remaining issues and discussion
All the rest should be implemented and functional now - 02:34 PM bug #8367 (New): Advanced media view is not available for media not edited in media details view
- Copied from #8283:
"With the current implementation it is not possible to switch between advanced and simple view bu... - 02:29 PM feature request #8286 (Closed): Add cm as unit term to CDM
- Testes and already used in additivity_ontology on test server.
- 02:22 PM feature request #8351 (Closed): name page: show type designations with map
- 01:55 PM task #8363 (In Progress): PESI SOAP service seems to return duplicate records
- I send an email to Bart ....
- 01:17 PM task #8363: PESI SOAP service seems to return duplicate records
- As the uuid seems to be the same I don't think we have data duplicates
- 01:16 PM task #8363: PESI SOAP service seems to return duplicate records
- If you are sure that this is not a data or data submission issue, I will delegate this problem to Bart Vanhoorn.
- 01:10 PM task #8363: PESI SOAP service seems to return duplicate records
- Why did you assign this to me. As it does not seem to be data issue but a service issue I can't see what I can do.
- 12:58 PM task #8363: PESI SOAP service seems to return duplicate records
- The search for "Crepis foetida%" (`http --timeout 600 https://cybertaxonomy.eu/eu-bon/utis/1.3/search 'providers==pes...
- 12:12 PM task #8363: PESI SOAP service seems to return duplicate records
- can you say which data is duplicated?
Does it appear as duplicate in the eu-nomen portal as well? - 11:25 AM feature request #6238: add name of sec reference to display of concept relations in portal and a little header
- Hi Gabi,
ich habe gerade dieses Ticket hier gefunden - ist erledigt.
Kannst du mal gucken ob das jetzt soweit O...
07/13/2019
- 06:11 PM feature request #8366: Same typedesignation display for registration page as in name page
- Image position and type positions are fine. The source interrupt the reading but is an important reference.
![](pict... - 05:55 PM feature request #8366: Same typedesignation display for registration page as in name page
- Name and Registration pages are fine.
For types, map and specimens apear first, than the related name. I like this!
...
07/12/2019
- 08:25 PM feature request #8366: Same typedesignation display for registration page as in name page
- Wolf-Henning Kusber wrote:
> No review, may be I was to fast:
> http://test.e-taxonomy.eu/dataportal/preview/phyco... - 07:29 PM feature request #8366: Same typedesignation display for registration page as in name page
- Name page okay: http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/8ad8bc6d-b413-4af1-8876-fb...
- 07:28 PM feature request #8366: Same typedesignation display for registration page as in name page
- No review, may be I was to fast:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration... - 05:11 PM feature request #8366: Same typedesignation display for registration page as in name page
- please review
- 05:10 PM feature request #8366 (Resolved): Same typedesignation display for registration page as in name page
- Applied in changeset commit:cdm-dataportal|41a348be0fd4782a984dd5f4e65069d7c7cb99f4.
- 03:42 PM feature request #8366 (Closed): Same typedesignation display for registration page as in name page
- The registration page should display the typedesignation in the same ways as in the name page.
A map should also be ... - 07:15 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Reviewing the screen shot:
First representation: Lectotype (reference) gathering(Code accession number)
Second repr... - 11:59 AM bug #8365 (Feedback): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- I removed the parentheses but these now causes inconsistent display:
![](picture686-1.png)
What do you think He... - 12:01 PM feature request #8357 (In Progress): implement client adapter for diatom base
- 12:01 PM feature request #8357: implement client adapter for diatom base
- Bart Vanhoorne wote:
diatombase.org (and all other subregisters in WoRMS/Aphia http://www.marinespecies.org/subre...
07/11/2019
- 06:04 PM bug #8365 (Resolved): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- We should also consider removing the parentheses from the accession number since this seems to be useless in most sit...
- 06:00 PM bug #8365 (Closed): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Users frequently enter the collection code with the accession number which can cause to code to appear duplicated in ...
- 04:41 PM bug #6151: implement pager for search service
- Email sent to Scott Chamberlain
- 04:28 PM bug #6151 (Resolved): implement pager for search service
- 04:24 PM bug #8364 (Closed): ext-links module: problems
- Hallo,
wo wir gerade vom Portal reden...
Ich habe mal den External links – sidebar getestet (bei den Cactaceae, O... - 02:39 PM task #8363: PESI SOAP service seems to return duplicate records
- Hi Anderas, I added you to this ticket as watcher since this could be an issue wit the data delivery to VLIZ
- 02:36 PM task #8363 (Worksforme): PESI SOAP service seems to return duplicate records
- see
~~~
http --timeout 600 :8081/search 'providers==pesi' 'query==Crepis foetida' searchMode==scientificNameLike... - 02:33 PM feature request #6213 (Resolved): use separate tempfolder per store updater
- 02:23 PM bug #8129: Load images asynchronously in media details view
- > This also holds for the image gallery view if "show thumbnails" is switched on (but hopefully there only thumbnail ...
- 02:19 PM bug #8129 (Resolved): Load images asynchronously in media details view
- 01:04 PM feature request #8362 (Closed): GBIFBackboneClient offers too vast amount of subchecklists
07/10/2019
- 11:12 PM feature request #8362 (Closed): GBIFBackboneClient offers too vast amount of subchecklists
- The GBIFBackboneClient fetches all 45400 sub checklists. This makes the capabilities response extremely unusable and ...
07/09/2019
- 11:16 PM bug #6151: implement pager for search service
- the paging mechanism for the WoRMS and PESI clients is implemented.
The PESI SOAP service however seems to return ... - 10:48 PM feature request #8360 (Worksforme): paging results of /classification/{taxonId}/children webservice
- The WoRMS and PESI webservices only return the first 50 taxa. It is needed to use the offset parameter to obtain all ...
- 04:37 PM task #8359 (Closed): Update WoRMS client adapter
- 01:56 PM task #8359 (Resolved): Update WoRMS client adapter
- Applied in changeset commit:utis-core|f9e3e79e7fd8009ed3c8353d032b028086321f34.
- 01:52 PM task #8359 (Closed): Update WoRMS client adapter
- The SOAP API of Aphia has changed
- 12:00 PM feature request #8357: implement client adapter for diatom base
- Diatom base is fully integrated into WoRMS served throgh the same system.
The search form for DiatomBase uses in t... - 11:22 AM feature request #8356 (In Progress): Algae Names Index - implementation
- 11:12 AM feature request #8358 (Duplicate): Show name type only if rank is higher than species
- 10:44 AM feature request #8358: Show name type only if rank is higher than species
- this seems like duplicate of #7690
- 10:39 AM feature request #8358 (Duplicate): Show name type only if rank is higher than species
- Show name type only if rank is higher than species in Vaadin.
This might enhance usability of the type section for... - 08:56 AM feature request #8355 (Resolved): implement client adapter for phycobank
- Applied in changeset commit:utis-core|ad30a5f15e02eab30f50c2f9c598860ab822d6d5.
07/08/2019
- 03:45 PM feature request #8357 (Closed): implement client adapter for diatom base
- example requests:
~~~
http --timeout 600 :8081/search 'providers==worms[diatombase]' 'query==Eunotia can' searchM... - 03:42 PM feature request #8356 (In Progress): Algae Names Index - implementation
- In contrast to the original concept considerations for an index (#6184), we have chosen a more straight forward solut...
- 03:34 PM feature request #8355 (Closed): implement client adapter for phycobank
- example requests:
* http :8081/search providers==bgbm-phycobank\[phycobank\] 'query==Navicula*' searchMode==scient... - 01:00 PM feature request #8352 (Closed): name page: show nomenclatorical acts
- Yes, closed now.
- 12:05 PM feature request #8352: name page: show nomenclatorical acts
- So we can close this ticket?
- 12:55 PM feature request #8351: name page: show type designations with map
- The map is now being suppressed if there are no points to show,
- 12:04 PM feature request #8354 (Closed): taxonomic registration search by name finds also typifications for this name
- 11:17 AM feature request #8354: taxonomic registration search by name finds also typifications for this name
- Name types for genera can be found by entering the name (fake entry for "Phacus"). Ticket might be closed (but see Pl...
- 11:02 AM task #8201: test all delete functionality in the RegistrationUI
- Wolf-Henning Kusber wrote:
> Article not linked to any registration can be deleted without problem.
... but is no... - 10:50 AM task #8201: test all delete functionality in the RegistrationUI
- Delete button is available for references with registrations. Trying to delete (which realy does not any sense) produ...
- 10:43 AM task #8201: test all delete functionality in the RegistrationUI
- Article not linked to any registration can be deleted without problem.
- 10:36 AM task #8201: test all delete functionality in the RegistrationUI
- Saved specimen type in Registration (preparation): full functionality.
Saved name specimen type in Registration (pre...
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