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From 06/17/2019 to 07/16/2019

07/16/2019

07:58 PM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
OK, now I at least understand what it is used for. However, I doubt (but am not sure) that this is still needed. Mayb... Andreas Müller
06:57 PM feature request #8306: Registration page links to registered taxon name
fine, ticket can be closed. Wolf-Henning Kusber
06:54 PM feature request #7966: Registration search simplify type select options
Lectotype gives back: Specimen types AND Name types of genera, species and below = correct
Problem fully resolved....
Wolf-Henning Kusber
06:45 PM feature request #7966: Registration search simplify type select options
Original designation gives back: Name types of genera = correct
Holotype gives back: Specimen types of species and b...
Wolf-Henning Kusber
06:29 PM task #8209: use ellypsed references for all reference comboboxes
Again there are extremely long entries. The breadth of the dropdown box differs extremly.
![](picture177-1.png)
Wolf-Henning Kusber
06:18 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
Quote
"OK, parentheses are removed again."
The brackets are reinstated not removed but should be removed, see S...
Wolf-Henning Kusber
12:08 PM bug #8365 (Resolved): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
OK, parentheses are removed again. Andreas Kohlbecker
06:11 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
Info for Genera without reference:
The chosen name needs to be completed before it can be used. Please add the nome...
Wolf-Henning Kusber
06:09 PM bug #7187 (Closed): ReferenceEditor: saving with DOI casues exception
Andreas Kohlbecker
05:46 PM bug #7187: ReferenceEditor: saving with DOI casues exception
Review fehlte. Feature seit Monaten ohne Beanstandung im Routinebetrieb der Release Version. Ticket kann geschlossen ... Wolf-Henning Kusber
06:00 PM bug #7845: NamePopupEditor new Genus button should clear the genus name field in the new editor
new error: #8374 Wolf-Henning Kusber
05:56 PM bug #7845: NamePopupEditor new Genus button should clear the genus name field in the new editor
Ticket can be closed, but "Save" error when an uninominal should be saved. Wolf-Henning Kusber
06:00 PM bug #8374 (Duplicate): Save genus generated for a species with a different reference
Test system:
New species entered. Genus not in list.
Input "new" genus with reference entered. Saving result in a...
Wolf-Henning Kusber
05:56 PM bug #7885 (Worksforme): registration search by name finds also typifications for this name
this is now obviously working:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration-...
Andreas Kohlbecker
05:51 PM feature request #8294 (Feedback): Make display of ID in source and ID Namespace configurable
Patrick, can you try to fix the open issues? Andreas Müller
05:47 PM feature request #8294: Make display of ID in source and ID Namespace configurable
yes, it is switched and also in both views it is called "ID in Namespace" but should be "ID Namespace". Also ID Names... Andreas Müller
05:38 PM feature request #6709 (Closed): Do not show UUID on media page

And now to your last question:
> By the way, why have we removed the possibility to show multiple representation...
Andreas Kohlbecker
05:35 PM feature request #6709: Do not show UUID on media page
Andreas Müller wrote:
> By the way, is there a reason why we show the file name below image? Sometimes it is very ug...
Andreas Kohlbecker
05:30 PM feature request #6709: Do not show UUID on media page
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > e.g.: http://int.e-taxonomy.eu/dataportal/integration/referen...
Andreas Kohlbecker
02:41 PM feature request #6709 (Feedback): Do not show UUID on media page
Feel free to create new tickets from the above questions. Andreas Müller
02:41 PM feature request #6709: Do not show UUID on media page
Connected with the representation is the question which filename to use different representations have different file... Andreas Müller
02:39 PM feature request #6709: Do not show UUID on media page
By the way, why have we removed the possibility to show multiple representations on the media page? It would be nice ... Andreas Müller
02:35 PM feature request #6709: Do not show UUID on media page
By the way, is there a reason why we show the file name below image? Sometimes it is very ugly like in the above ment... Andreas Müller
02:14 PM feature request #6709: Do not show UUID on media page
Andreas Kohlbecker wrote:
> e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0b...
Andreas Müller
05:34 PM feature request #8373 (New): media page: avoid showing ugly file names as title replacement

By the way, is there a reason why we show the file name below image? Sometimes it is very ugly like in the above me...
Andreas Kohlbecker
05:29 PM feature request #8372 (New): media page: show media type in the page title
distinguish the different media types an to adapt the title accordingly: Instead of "Media ...", "Image ...", "Video ... Andreas Kohlbecker
05:23 PM bug #8340 (Feedback): is accepted for Footnotes missing and with wrong index
Andreas Kohlbecker
05:23 PM bug #8340: is accepted for Footnotes missing and with wrong index
Andreas Müller wrote:
> I do not really understand the problem. On http://test.e-taxonomy.eu/dataportal/preview/cich...
Andreas Kohlbecker
02:07 PM bug #8340: is accepted for Footnotes missing and with wrong index
I do not really understand the problem. On http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/tax... Andreas Müller
05:22 PM bug #8260 (Feedback): Details and Supplemental Data View do not save the expansion state of sections
Now, nomenclatural reference is never expanded. Maybe it was like this before already and I simply did not recognize. Andreas Müller
05:15 PM feature request #8283 (Feedback): Allow adding media to terms in taxeditor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > The data may got lost the following way.
> >
> > * Open term...
Andreas Müller
05:13 PM feature request #6316 (Closed): display source references of media objects in media page
using ; as separator for multiple sources: commit:cdm-dataportal|c021779a Andreas Kohlbecker
02:55 PM feature request #6316 (Feedback): display source references of media objects in media page
Generally this works. Only we should replace "," by ";" as separator for multiple sources. The former is often part o... Andreas Müller
05:03 PM feature request #8245: Improve representation of DescriptionElementBase.timeperiod
here it is: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/c246856f-c03e-4cb7-ac92-d9... Andreas Kohlbecker
02:59 PM feature request #8245: Improve representation of DescriptionElementBase.timeperiod
Andreas Kohlbecker wrote:
> done, for testing you can use for example http://edit.test/d7/reference_int/cdm_dataport...
Andreas Müller
05:02 PM bug #8371 (New): When creating a new term for a vocabulary the term should have the focus afterwards
... maybe even better, the focus should go to the details view label field to allow immediately enter the label for t... Andreas Müller
05:02 PM bug #8343: potential timezone problem in application stack
Andreas Müller wrote:
> I don't understand why this is rejected. The problem still exists as you can see in the abov...
Andreas Kohlbecker
04:47 PM bug #8343: potential timezone problem in application stack
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Maybe this is an issue which comes from the time when the tim...
Andreas Kohlbecker
03:18 PM bug #8343: potential timezone problem in application stack
Andreas Kohlbecker wrote:
> Maybe this is an issue which comes from the time when the timezone data was not correctl...
Andreas Müller
03:16 PM bug #8343 (Feedback): potential timezone problem in application stack
I don't understand why this is rejected. The problem still exists as you can see in the above link. It might not be a... Andreas Müller
04:47 PM bug #8129: Load images asynchronously in media details view
Also we may want to have a replacement image which shows "loading" or something similar while the image is loading. A... Andreas Müller
04:44 PM bug #8129 (Feedback): Load images asynchronously in media details view
It seems to work only in the simple view but not in the advanced view.
As an example use rem_conf_am, bulk editor ...
Andreas Müller
04:44 PM bug #8370: feature blocks created by compose_description_element_individuals_association() are broken
Andreas Müller wrote:
> I think you accidentaly changed back to status "new"
thanx for fixing this Andreas.
@K...
Andreas Kohlbecker
04:08 PM bug #8370 (Resolved): feature blocks created by compose_description_element_individuals_association() are broken
I think you accidentaly changed back to status "new" Andreas Müller
04:04 PM bug #8370 (New): feature blocks created by compose_description_element_individuals_association() are broken
this bug has been introduced with commit:cdm-dataportal|e89c1115 Andreas Kohlbecker
04:03 PM bug #8370 (Resolved): feature blocks created by compose_description_element_individuals_association() are broken
Applied in changeset commit:cdm-dataportal|43d01429e6dbd2d56970902ad525376f00b699b1. Andreas Kohlbecker
04:00 PM bug #8370 (Closed): feature blocks created by compose_description_element_individuals_association() are broken
For example Achnanthidium exiguum (Grunow) Czarn. in Algaterra shows multiple errors in the error box:
~~~
Warnin...
Andreas Kohlbecker
03:20 PM feature request #8320 (Resolved): Links to reference page as appendend icon instead of having the whole citation as link
Andreas Müller
03:17 PM bug #8369 (Closed): SpecimenTypeDesignationDTO can not be serialized to JSON
Andreas Kohlbecker
02:19 PM bug #8369 (Closed): SpecimenTypeDesignationDTO can not be serialized to JSON
SpecimenTypeDesignationDTO is missing getters and setters and thus can not be serialized Andreas Kohlbecker
03:15 PM bug #8368 (Feedback): problems in compose_cdm_specimen_or_observation_tree_entry()
Katja, please help disentangling the situation. Andreas Kohlbecker
03:13 PM bug #8368: problems in compose_cdm_specimen_or_observation_tree_entry()
After fixing the problems in this code i noticed that this code is not generating any output at all.
I attempted t...
Andreas Kohlbecker
02:19 PM bug #8368: problems in compose_cdm_specimen_or_observation_tree_entry()
working on this issue I found another issue: #8369 Andreas Kohlbecker
02:18 PM bug #8368 (In Progress): problems in compose_cdm_specimen_or_observation_tree_entry()
Andreas Kohlbecker
12:10 PM bug #8368 (Closed): problems in compose_cdm_specimen_or_observation_tree_entry()
Hallo Katja,

ich leite das mal an dich weiter, denn es gibt hier ein Problem mit deinem Kode in compose_cdm_speci...
Andreas Kohlbecker
03:14 PM task #8118: Update MySQL drivers
Andreas Kohlbecker wrote:
> **The proper solution it the timezone problem is documented at MySqlFaq#The-server-time-...
Andreas Müller
12:48 PM feature request #7791 (Closed): Visualize the phycobank higher taxon graph
No improvements are needed by now Andreas Kohlbecker
12:47 PM bug #8321 (Closed): Namepage shows wrong taxa as related to the name
Wolf-Henning Kusber wrote:
> Both Eunotia krammeri with different Author teams are not mixed anymore. The described ...
Andreas Kohlbecker
12:41 PM bug #8278 (Closed): LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator
closing, since this problem no longer occurred. Andreas Kohlbecker
12:13 PM feature request #8366 (Closed): Same typedesignation display for registration page as in name page
Andreas Kohlbecker
12:09 PM feature request #8357 (Closed): implement client adapter for diatom base
Andreas Kohlbecker

07/15/2019

04:30 PM bug #8233: [Follow up] Creating type duplicates
Move to next milestone for 5.8 release Patrick Plitzner
04:14 PM bug #8225: Deleting one of two type designations removes both
Move to next milestone to implement a better solution than the temporary fix. Patrick Plitzner
04:02 PM feature request #6849: [DISCUSS] How to handle "kind of" term creation in TermEditor
Moving to next milestone for further discussion Patrick Plitzner
03:58 PM feature request #8135 (Feedback): Implement verbatim type information in TaxEditor
@Andreas: There was something Walter wanted but I can't remember what it was. Depending on that we may close this tic... Patrick Plitzner
03:27 PM task #8130: Check if related feature data is cleared when supported facts type is changed
Move to next milestone for remaining discussion Patrick Plitzner
03:26 PM feature request #8044: Add "Move to..." menu to term editor
Move to next milestone because this is still considered experimental Patrick Plitzner
03:25 PM feature request #8248: Implement OWL import
Move to next milestone because this is still considered experimental Patrick Plitzner
03:24 PM feature request #6774: Implement OWL export
Move to next milestone because this is still considered experimental Patrick Plitzner
03:23 PM feature request #8335 (Resolved): Store character matrix table state as DB preference
Patrick Plitzner
03:22 PM feature request #8335: Store character matrix table state as DB preference
Move to next milestone because the character matrix is still considered experimental Patrick Plitzner
03:20 PM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
Move to next milestone because this is still considered experimental Patrick Plitzner
03:19 PM feature request #8294: Make display of ID in source and ID Namespace configurable
Tested on nightly: The admin and local preferences work as expected BUT they seem to be swapped. Also the one prefere... Patrick Plitzner
02:36 PM feature request #8283: Allow adding media to terms in taxeditor
Added #8367 for remaining issues and discussion
All the rest should be implemented and functional now
Patrick Plitzner
02:34 PM bug #8367 (New): Advanced media view is not available for media not edited in media details view
Copied from #8283:
"With the current implementation it is not possible to switch between advanced and simple view bu...
Patrick Plitzner
02:29 PM feature request #8286 (Closed): Add cm as unit term to CDM
Testes and already used in additivity_ontology on test server. Patrick Plitzner
02:22 PM feature request #8351 (Closed): name page: show type designations with map
Andreas Kohlbecker
01:55 PM task #8363 (In Progress): PESI SOAP service seems to return duplicate records
I send an email to Bart .... Andreas Kohlbecker
01:17 PM task #8363: PESI SOAP service seems to return duplicate records
As the uuid seems to be the same I don't think we have data duplicates Andreas Müller
01:16 PM task #8363: PESI SOAP service seems to return duplicate records
If you are sure that this is not a data or data submission issue, I will delegate this problem to Bart Vanhoorn. Andreas Kohlbecker
01:10 PM task #8363: PESI SOAP service seems to return duplicate records
Why did you assign this to me. As it does not seem to be data issue but a service issue I can't see what I can do. Andreas Müller
12:58 PM task #8363: PESI SOAP service seems to return duplicate records
The search for "Crepis foetida%" (`http --timeout 600 https://cybertaxonomy.eu/eu-bon/utis/1.3/search 'providers==pes... Andreas Kohlbecker
12:12 PM task #8363: PESI SOAP service seems to return duplicate records
can you say which data is duplicated?
Does it appear as duplicate in the eu-nomen portal as well?
Andreas Müller
11:25 AM feature request #6238: add name of sec reference to display of concept relations in portal and a little header
Hi Gabi,
ich habe gerade dieses Ticket hier gefunden - ist erledigt.
Kannst du mal gucken ob das jetzt soweit O...
Andreas Kohlbecker

07/13/2019

06:11 PM feature request #8366: Same typedesignation display for registration page as in name page
Image position and type positions are fine. The source interrupt the reading but is an important reference.
![](pict...
Wolf-Henning Kusber
05:55 PM feature request #8366: Same typedesignation display for registration page as in name page
Name and Registration pages are fine.
For types, map and specimens apear first, than the related name. I like this!
...
Wolf-Henning Kusber

07/12/2019

08:25 PM feature request #8366: Same typedesignation display for registration page as in name page
Wolf-Henning Kusber wrote:
> No review, may be I was to fast:
> http://test.e-taxonomy.eu/dataportal/preview/phyco...
Andreas Kohlbecker
07:29 PM feature request #8366: Same typedesignation display for registration page as in name page
Name page okay: http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/8ad8bc6d-b413-4af1-8876-fb... Wolf-Henning Kusber
07:28 PM feature request #8366: Same typedesignation display for registration page as in name page
No review, may be I was to fast:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration...
Wolf-Henning Kusber
05:11 PM feature request #8366: Same typedesignation display for registration page as in name page
please review Andreas Kohlbecker
05:10 PM feature request #8366 (Resolved): Same typedesignation display for registration page as in name page
Applied in changeset commit:cdm-dataportal|41a348be0fd4782a984dd5f4e65069d7c7cb99f4. Andreas Kohlbecker
03:42 PM feature request #8366 (Closed): Same typedesignation display for registration page as in name page
The registration page should display the typedesignation in the same ways as in the name page.
A map should also be ...
Andreas Kohlbecker
07:15 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
Reviewing the screen shot:
First representation: Lectotype (reference) gathering(Code accession number)
Second repr...
Wolf-Henning Kusber
11:59 AM bug #8365 (Feedback): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
I removed the parentheses but these now causes inconsistent display:
![](picture686-1.png)
What do you think He...
Andreas Kohlbecker
12:01 PM feature request #8357 (In Progress): implement client adapter for diatom base
Andreas Kohlbecker
12:01 PM feature request #8357: implement client adapter for diatom base
Bart Vanhoorne wote:
diatombase.org (and all other subregisters in WoRMS/Aphia http://www.marinespecies.org/subre...
Andreas Kohlbecker

07/11/2019

06:04 PM bug #8365 (Resolved): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
We should also consider removing the parentheses from the accession number since this seems to be useless in most sit... Andreas Kohlbecker
06:00 PM bug #8365 (Closed): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
Users frequently enter the collection code with the accession number which can cause to code to appear duplicated in ... Andreas Kohlbecker
04:41 PM bug #6151: implement pager for search service
Email sent to Scott Chamberlain Andreas Kohlbecker
04:28 PM bug #6151 (Resolved): implement pager for search service
Andreas Kohlbecker
04:24 PM bug #8364 (Closed): ext-links module: problems
Hallo,
wo wir gerade vom Portal reden...
Ich habe mal den External links – sidebar getestet (bei den Cactaceae, O...
Andreas Kohlbecker
02:39 PM task #8363: PESI SOAP service seems to return duplicate records
Hi Anderas, I added you to this ticket as watcher since this could be an issue wit the data delivery to VLIZ Andreas Kohlbecker
02:36 PM task #8363 (Worksforme): PESI SOAP service seems to return duplicate records
see
~~~
http --timeout 600 :8081/search 'providers==pesi' 'query==Crepis foetida' searchMode==scientificNameLike...
Andreas Kohlbecker
02:33 PM feature request #6213 (Resolved): use separate tempfolder per store updater
Andreas Kohlbecker
02:23 PM bug #8129: Load images asynchronously in media details view
> This also holds for the image gallery view if "show thumbnails" is switched on (but hopefully there only thumbnail ... Patrick Plitzner
02:19 PM bug #8129 (Resolved): Load images asynchronously in media details view
Patrick Plitzner
01:04 PM feature request #8362 (Closed): GBIFBackboneClient offers too vast amount of subchecklists
Andreas Kohlbecker

07/10/2019

11:12 PM feature request #8362 (Closed): GBIFBackboneClient offers too vast amount of subchecklists
The GBIFBackboneClient fetches all 45400 sub checklists. This makes the capabilities response extremely unusable and ... Andreas Kohlbecker

07/09/2019

11:16 PM bug #6151: implement pager for search service
the paging mechanism for the WoRMS and PESI clients is implemented.
The PESI SOAP service however seems to return ...
Andreas Kohlbecker
10:48 PM feature request #8360 (Worksforme): paging results of /classification/{taxonId}/children webservice
The WoRMS and PESI webservices only return the first 50 taxa. It is needed to use the offset parameter to obtain all ... Andreas Kohlbecker
04:37 PM task #8359 (Closed): Update WoRMS client adapter
Andreas Kohlbecker
01:56 PM task #8359 (Resolved): Update WoRMS client adapter
Applied in changeset commit:utis-core|f9e3e79e7fd8009ed3c8353d032b028086321f34. Andreas Kohlbecker
01:52 PM task #8359 (Closed): Update WoRMS client adapter
The SOAP API of Aphia has changed Andreas Kohlbecker
12:00 PM feature request #8357: implement client adapter for diatom base
Diatom base is fully integrated into WoRMS served throgh the same system.
The search form for DiatomBase uses in t...
Andreas Kohlbecker
11:22 AM feature request #8356 (In Progress): Algae Names Index - implementation
Andreas Kohlbecker
11:12 AM feature request #8358 (Duplicate): Show name type only if rank is higher than species
Andreas Kohlbecker
10:44 AM feature request #8358: Show name type only if rank is higher than species
this seems like duplicate of #7690 Andreas Kohlbecker
10:39 AM feature request #8358 (Duplicate): Show name type only if rank is higher than species
Show name type only if rank is higher than species in Vaadin.
This might enhance usability of the type section for...
Wolf-Henning Kusber
08:56 AM feature request #8355 (Resolved): implement client adapter for phycobank
Applied in changeset commit:utis-core|ad30a5f15e02eab30f50c2f9c598860ab822d6d5. Andreas Kohlbecker

07/08/2019

03:45 PM feature request #8357 (Closed): implement client adapter for diatom base
example requests:
~~~
http --timeout 600 :8081/search 'providers==worms[diatombase]' 'query==Eunotia can' searchM...
Andreas Kohlbecker
03:42 PM feature request #8356 (In Progress): Algae Names Index - implementation
In contrast to the original concept considerations for an index (#6184), we have chosen a more straight forward solut... Andreas Kohlbecker
03:34 PM feature request #8355 (Closed): implement client adapter for phycobank
example requests:
* http :8081/search providers==bgbm-phycobank\[phycobank\] 'query==Navicula*' searchMode==scient...
Andreas Kohlbecker
01:00 PM feature request #8352 (Closed): name page: show nomenclatorical acts
Yes, closed now. Wolf-Henning Kusber
12:05 PM feature request #8352: name page: show nomenclatorical acts
So we can close this ticket? Andreas Kohlbecker
12:55 PM feature request #8351: name page: show type designations with map
The map is now being suppressed if there are no points to show, Andreas Kohlbecker
12:04 PM feature request #8354 (Closed): taxonomic registration search by name finds also typifications for this name
Andreas Kohlbecker
11:17 AM feature request #8354: taxonomic registration search by name finds also typifications for this name
Name types for genera can be found by entering the name (fake entry for "Phacus"). Ticket might be closed (but see Pl... Wolf-Henning Kusber
11:02 AM task #8201: test all delete functionality in the RegistrationUI
Wolf-Henning Kusber wrote:
> Article not linked to any registration can be deleted without problem.
... but is no...
Wolf-Henning Kusber
10:50 AM task #8201: test all delete functionality in the RegistrationUI
Delete button is available for references with registrations. Trying to delete (which realy does not any sense) produ... Wolf-Henning Kusber
10:43 AM task #8201: test all delete functionality in the RegistrationUI
Article not linked to any registration can be deleted without problem. Wolf-Henning Kusber
10:36 AM task #8201: test all delete functionality in the RegistrationUI
Saved specimen type in Registration (preparation): full functionality.
Saved name specimen type in Registration (pre...
Wolf-Henning Kusber

07/05/2019

08:19 PM feature request #8352: name page: show nomenclatorical acts
Example for checking (including data cleaning issues to be solved by whk):
Achnanthes austriaca
name is not regis...
Wolf-Henning Kusber
12:00 AM feature request #8352: name page: show nomenclatorical acts
please review Andreas Kohlbecker
07:58 PM feature request #8354: taxonomic registration search by name finds also typifications for this name
Lectotypes/Epitypes of names are found by th name. Issue solved.
For name types of rank=genus and higher no data a...
Wolf-Henning Kusber
12:02 AM feature request #8354 (Resolved): taxonomic registration search by name finds also typifications for this name
done. please review Andreas Kohlbecker
07:33 PM feature request #8351: name page: show type designations with map
Sorry, an issue for georeferences not entered. Please see:
Eunotia tauntoniensis Hust. Type: United States of Americ...
Wolf-Henning Kusber
11:57 AM feature request #8351: name page: show type designations with map
Works fine, ticket can be closed. Wolf-Henning Kusber
12:02 AM feature request #8351: name page: show type designations with map
please review Andreas Kohlbecker

07/04/2019

10:39 PM feature request #8352 (Resolved): name page: show nomenclatorical acts
Applied in changeset commit:cdm-dataportal|efff6ee1db489abd192b1193e652f25978fc2441. Andreas Kohlbecker
07:06 PM feature request #8352 (Closed): name page: show nomenclatorical acts
show Registrations on the name page Andreas Kohlbecker
10:39 PM feature request #8351 (Resolved): name page: show type designations with map
Applied in changeset commit:cdm-dataportal|14076b88ce598053035a48076f0a8f0af5c99cd3. Andreas Kohlbecker
06:59 PM feature request #8351 (Closed): name page: show type designations with map
show the name type and specimen type designations on the name page. In case the type specimens are having location da... Andreas Kohlbecker
09:17 PM feature request #8354 (Closed): taxonomic registration search by name finds also typifications for this name
The search for Registrations via the classification graph misses finding registrations with are only associated with ... Andreas Kohlbecker
07:18 PM bug #8353 (New): nomenclatural and bibliographic in-reference displayed
The nomenclatural author team is suplemented by the bibliographical author team, this is misleading.
Example: http...
Wolf-Henning Kusber
03:18 PM feature request #8256 (In Progress): Show all status preferences as table
there is a table of all area specific status preferences on the admin distribution preference page. It is possible to... Katja Luther
02:11 PM bug #6380: typedesignations missing in homotypic group
please review, e.g. at the example of http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/a6... Andreas Kohlbecker
02:09 PM bug #6380 (Resolved): typedesignations missing in homotypic group
Applied in changeset commit:cdm-dataportal|b059b449f976cd7e198a3e21c05e38fb038ba1eb. Andreas Kohlbecker
01:17 PM bug #8349 (Closed): NPE in ParseHandler when parsing name without nomencl reference
Tested local hotfix branch. Created a new taxon and, in the name editor, added and edited misapplications and synonym... Patrick Plitzner
11:55 AM bug #8349 (Resolved): NPE in ParseHandler when parsing name without nomencl reference
please review, we need an hotfix because this error is always thrown if someone wants to create a new name without th... Katja Luther
11:51 AM bug #8349 (Closed): NPE in ParseHandler when parsing name without nomencl reference
when parsing name without nomenclatural reference the following NPE is thrown:
~~~ text
Caused by: java.lang.Null...
Katja Luther
12:23 PM feature request #8283 (Resolved): Allow adding media to terms in taxeditor
this seems to work now. (the details view is still empty when changing to referencing objects view, but adding the me... Katja Luther
12:01 PM bug #8347 (Closed): point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
Andreas Kohlbecker
09:50 AM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
The isohypse is very helpfull.
Just a minor issue remaining, when trying to zoom into Berlin this is easy and fast...
Wolf-Henning Kusber
12:01 PM feature request #8350 (Closed): Search dialog for named areas should work with abbreviations
The search dialog for named areas should be configurable whether the seach should be over the label, or one of the ab... Katja Luther
11:34 AM feature request #8346 (Closed): Curators and admins can edit arbitrary Annotations (Notes)
Selecting no term type is ok. These annotations are handled as untyped.
The new termtype 'Public Note' needs to be...
Andreas Kohlbecker
09:59 AM feature request #8346: Curators and admins can edit arbitrary Annotations (Notes)
Fields are implemented. Additional field can be added.
Question: should we take one entry as default (e.g. edition...
Wolf-Henning Kusber
10:54 AM feature request #7620 (Closed): RegistrationSearch implemented with Reference filter
Andreas Kohlbecker
09:33 AM feature request #7620: RegistrationSearch implemented with Reference filter
Perfectly solved! This enhances the usabiliy of PhycoBank significantly.
Search functionality is available for
st...
Wolf-Henning Kusber

07/03/2019

06:19 PM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
nicely done:
our example with NZ and DE: Planothidium victori:
http://test.e-taxonomy.eu/dataportal/preview/phyco...
Wolf-Henning Kusber
06:05 PM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
issue solved, please review Andreas Kohlbecker
04:02 PM bug #8347 (Resolved): point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
Applied in changeset commit:cdm-dataportal|95aba8b561b3695d047b50a25a24fc41f1f83b32. Andreas Kohlbecker
04:00 PM bug #8347 (Closed): point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
example:
* https://www.phycobank.org/cdm_dataportal/taxon/6e0895b4-64ee-4b1a-ba87-403ee7888f94
* http://test.e-t...
Andreas Kohlbecker
04:47 PM feature request #7620: RegistrationSearch implemented with Reference filter
see above. The filter is not working.
With the given search strings all published registrations from new to old are ...
Wolf-Henning Kusber
12:57 PM feature request #7620: RegistrationSearch implemented with Reference filter
The test server was not up to date. The problem which was causing this is fixed now. Please test again. Andreas Kohlbecker
09:44 AM feature request #7620: RegistrationSearch implemented with Reference filter
Field "Publication" available,
search functionality not given.
"Baikal" gives back Baikal-Taxa + African etc. taxa
...
Wolf-Henning Kusber
04:31 PM bug #8337: internal error, name type status missing, reference in name type not updated
The duplicate type (first one) cannot be deleted in Vaadin, because it is not possible to open the record and to get ... Wolf-Henning Kusber
03:16 PM bug #8337 (Worksforme): internal error, name type status missing, reference in name type not updated
This problem can not be reproduced on the test system. The duplicate name type designations can be removed by deletin... Andreas Kohlbecker

07/02/2019

06:18 PM feature request #8346: Curators and admins can edit arbitrary Annotations (Notes)
please review
(the solution is not a beauty but it is working!)
Andreas Kohlbecker
06:17 PM feature request #8346 (Resolved): Curators and admins can edit arbitrary Annotations (Notes)
Applied in changeset commit:cdm-vaadin|c02fc11ae73482b118a48cfb4fca97e7302bda1f. Andreas Kohlbecker
05:58 PM feature request #8346 (Closed): Curators and admins can edit arbitrary Annotations (Notes)
The FilterableAnnotationsField should offer the option to edit arbitrary notes (annotations) in all views where it is... Andreas Kohlbecker
04:14 PM feature request #7620: RegistrationSearch implemented with Reference filter
ready for review Andreas Kohlbecker
03:15 PM feature request #7621 (Closed): registration search also covers typified names
fully solved Andreas Kohlbecker
03:14 PM feature request #8330 (Closed): RegistrationDao search method
fully solved Andreas Kohlbecker
03:11 PM bug #8287: RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
please review Andreas Kohlbecker
03:10 PM bug #8287 (Resolved): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
Applied in changeset commit:cdmlib|c40f420c355ee29b3b31e575c8d630f59cf55c0e. Andreas Kohlbecker
01:44 PM feature request #8345 (Closed): RegistrationListView: filter option for publication
Andreas Kohlbecker
01:42 PM feature request #8345 (Resolved): RegistrationListView: filter option for publication
Applied in changeset commit:cdm-vaadin|c609114c696fe3512d2c485b9d4e6a1a52dafac9. Andreas Kohlbecker
01:41 PM feature request #8345 (Closed): RegistrationListView: filter option for publication
extend the existing filters by a text field for publication citation patterns Andreas Kohlbecker
01:43 PM bug #7885 (In Progress): registration search by name finds also typifications for this name
Andreas Kohlbecker
01:43 PM bug #7885 (Closed): registration search by name finds also typifications for this name
Andreas Kohlbecker
12:59 PM bug #7885 (In Progress): registration search by name finds also typifications for this name
Andreas Kohlbecker
01:05 PM bug #8327 (Duplicate): record with publication date is competing with curation status, set to preparation or curation
closing as duplicate Andreas Kohlbecker
11:18 AM feature request #8342: shift field Field number
This is potentially easy to fix, thus i am setting this to HIGHEST. If it is more time consuming we should downgrade ... Andreas Kohlbecker

07/01/2019

02:45 PM feature request #6709 (Closed): Do not show UUID on media page
Andreas Kohlbecker wrote:
> e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0b...
Patrick Plitzner
02:42 PM feature request #6709: Do not show UUID on media page
e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0bf650c-4cc6-4dfe-bb2f-a289b426... Andreas Kohlbecker
10:45 AM feature request #6709 (Feedback): Do not show UUID on media page
Andreas Kohlbecker wrote:
> HI Patrick, is this issue about the UUID being used as replacement for missing title att...
Patrick Plitzner
01:42 PM feature request #8344 (Closed): Cdm light export: add dummy line in simple facts table
Hallo Katja,
...
Dann etwas für den Release, wenn’s geht:
Ich verwende die SimpleFact Tabelle im weiteren Verlauf ...
Katja Luther
01:41 PM feature request #8294 (Resolved): Make display of ID in source and ID Namespace configurable
please review Katja Luther

06/28/2019

02:05 PM feature request #8320 (Closed): Links to reference page as appendend icon instead of having the whole citation as link
done Andreas Kohlbecker
02:04 PM feature request #8320 (Resolved): Links to reference page as appendend icon instead of having the whole citation as link
Applied in changeset commit:cdm-dataportal|2ffe4d59b3a9ac3747f0b94a761adf3ea0f6de59. Andreas Kohlbecker
01:17 PM feature request #7620 (Resolved): RegistrationSearch implemented with Reference filter
Applied in changeset commit:cdm-dataportal|384ff2ba6f98d8d869093ff4be0fea7eb81d7a0e. Andreas Kohlbecker

06/27/2019

07:13 PM bug #8343 (Rejected): potential timezone problem in application stack
I don't think that we are having a timezone shift problem since the date is stored in the db as 2018-06-11 22:00:00. ... Andreas Kohlbecker
07:07 PM bug #8343 (Closed): potential timezone problem in application stack
Ist denn genau definiert, um welche Zeitzone es sich handelt? Ich frage auch weil auf https://www.phycobank.org/cdm_d... Andreas Kohlbecker
07:12 PM task #8118: Update MySQL drivers
**The proper solution it the timezone problem is documented at MySqlFaq#The-server-time-zone-value-is-unrecognized** Andreas Kohlbecker
07:03 PM feature request #8245 (Resolved): Improve representation of DescriptionElementBase.timeperiod
done, for testing you can use for example http://edit.test/d7/reference_int/cdm_dataportal/taxon/c246856f-c03e-4cb7-a... Andreas Kohlbecker
05:27 PM task #7269 (Closed): Use redmine as message hub for submitter curator communication
even if it has been completely implemented this feature has been rejected afterwards Andreas Kohlbecker
05:26 PM task #7269 (Rejected): Use redmine as message hub for submitter curator communication
Andreas Kohlbecker
05:00 PM feature request #4372 (In Progress): Selenium PortalPage class also suitable for zen-basetheme
Andreas Kohlbecker
02:26 PM task #7296 (Closed): externalize redmine api key
all resources removed Andreas Kohlbecker
02:20 PM task #4177 (Resolved): display of name relationships in synonymy broken
I detached the task #5856: "[DISCUSS] Consider implementing additional name relationships" from this issue so that we... Andreas Kohlbecker
10:34 AM feature request #7408 (Feedback): [E+M] Support for preferred common names in data portal
Is this ticket still relevant. I seem to remember that the preferred common names are currently in discussion. Andreas Kohlbecker
10:25 AM bug #8050 (Closed): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Okay, da offene Punkt auch mit Workflows zu tun hat, sollten wir den kommende Woche diskutieren. Schließe wie besproc... Wolf-Henning Kusber
09:04 AM bug #8050 (Resolved): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Wolf-Henning Kusber wrote:
> Das Problem in !#11 und !#12:
>
> Konkret möchte ich für einen existierenden Namen, ...
Andreas Kohlbecker

06/26/2019

05:52 PM feature request #6709 (Resolved): Do not show UUID on media page
done Andreas Kohlbecker
05:11 PM feature request #6709: Do not show UUID on media page
hi Patrick, could you please answer on my question? Andreas Kohlbecker
05:51 PM feature request #6316 (Resolved): display source references of media objects in media page
done and also test implemented. Andreas Kohlbecker
04:59 PM bug #8321: Namepage shows wrong taxa as related to the name
Both Eunotia krammeri with different Author teams are not mixed anymore. The described problem is solved and the tick... Wolf-Henning Kusber
04:49 PM feature request #8342: shift field Field number
Avoid overlap with collection date fields Wolf-Henning Kusber
04:47 PM feature request #8342 (Closed): shift field Field number
see screen shot
![](picture731-1.png)
Wolf-Henning Kusber
04:33 PM feature request #8341 (New): status without scroll bar

![](picture563-1.png)
reference detail not realy needed in our project. This could be as small as possible. It w...
Wolf-Henning Kusber
03:38 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Das Problem in !#11 und !#12:
Konkret möchte ich für einen existierenden Namen, z.B. "Micrasterias" einen (Namens-...
Wolf-Henning Kusber
01:59 PM task #5857 (Resolved): show nomenclatural status for for representations of TaxonName
Andreas Kohlbecker wrote:
> we (Andreas & Henning) decided to move the footnote in front of the relationship label d...
Andreas Kohlbecker
12:48 PM bug #8340 (Rejected): is accepted for Footnotes missing and with wrong index
The option "Display is accepted for ... on taxon pages when coming from a synonym link." needs to be turned on for th... Andreas Kohlbecker

06/25/2019

05:41 PM feature request #8304: Name page redirects to according taxon depending on query parameter
The layout settings page () now offers the following checkbox:
![](picture689-1.png)
Andreas Kohlbecker
04:47 PM feature request #8304: Name page redirects to according taxon depending on query parameter
The suggestion made in the issue description to use the name render templates to fine tune the behavior of the autore... Andreas Kohlbecker
03:47 PM feature request #8304: Name page redirects to according taxon depending on query parameter
Hallo,

ich bemerke gerade eine Veränderung in der Anzeige von Homonymbeziehungen:

Wenn ich in http://cichori...
Andreas Kohlbecker
01:28 PM feature request #8339 (New): Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
'acceptedFor' parameter which is used by the synonym page can potentially be replaced or removed.
this parameter i...
Andreas Kohlbecker
11:18 AM bug #8338 (New): Newly created structural modifier terms are not available in details view
steps to reproduce
1. Create a character in the character editor
1. Look at the available "Structural Modifiers" ...
Patrick Plitzner

06/24/2019

11:35 AM bug #8337 (Worksforme): internal error, name type status missing, reference in name type not updated
In the normal workflow a prelininary reference title was databased, than a new genus, a new species, than a name type... Wolf-Henning Kusber

06/20/2019

12:49 PM task #8336 (Duplicate): Unignore FeatureTest
Since FeatureNode and Tree was moved to term package it does not work anymore
eu.etaxonomy.cdm.io.jaxb.FeatureTest
Andreas Müller

06/19/2019

05:02 PM feature request #8335 (Closed): Store character matrix table state as DB preference
Patrick Plitzner
01:24 PM bug #8332 (Closed): Excel matrix exports only the visible rows
Tilo tested on nightly. Works fine. Patrick Plitzner
12:22 PM bug #8332 (Resolved): Excel matrix exports only the visible rows
Applied in changeset commit:taxeditor|34227fd826d1fd6e43b82f22ec35a5123bc9d813. Patrick Plitzner
01:23 PM feature request #8333 (Closed): Show modifiers for states in Character Matrix
Tilo tested on nightly. Works fine. Patrick Plitzner
11:20 AM feature request #8334 (Closed): Move sources for type designations to details view
Move sources for type designations to details view and remove them from the supplemental data view. Patrick Plitzner

06/18/2019

06:49 PM feature request #8333 (Resolved): Show modifiers for states in Character Matrix
Applied in changeset commit:taxeditor|9c38452812e67e28a5d1dfa09addf7ec9da01c28. Patrick Plitzner
06:48 PM feature request #8333 (Closed): Show modifiers for states in Character Matrix
Patrick Plitzner
03:31 PM bug #8332 (Closed): Excel matrix exports only the visible rows
When opening a character matrix and exporting it to excel only the visible rows are exported.
Once scrolled down s...
Patrick Plitzner

06/17/2019

01:21 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
Tilo tested on nightly. Works as expected. Patrick Plitzner
01:13 PM bug #8313 (Resolved): Multiple categorical data get deleted when clicked on in Character Matrix
Fixed with commit:taxeditor|270642049c506384a9dc6f4d398e5fdabe4ddf47 Patrick Plitzner
 

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