Activity
From 06/09/2019 to 07/08/2019
07/08/2019
- 03:45 PM feature request #8357 (Closed): implement client adapter for diatom base
- example requests:
~~~
http --timeout 600 :8081/search 'providers==worms[diatombase]' 'query==Eunotia can' searchM... - 03:42 PM feature request #8356 (In Progress): Algae Names Index - implementation
- In contrast to the original concept considerations for an index (#6184), we have chosen a more straight forward solut...
- 03:34 PM feature request #8355 (Closed): implement client adapter for phycobank
- example requests:
* http :8081/search providers==bgbm-phycobank\[phycobank\] 'query==Navicula*' searchMode==scient... - 01:00 PM feature request #8352 (Closed): name page: show nomenclatorical acts
- Yes, closed now.
- 12:05 PM feature request #8352: name page: show nomenclatorical acts
- So we can close this ticket?
- 12:55 PM feature request #8351: name page: show type designations with map
- The map is now being suppressed if there are no points to show,
- 12:04 PM feature request #8354 (Closed): taxonomic registration search by name finds also typifications for this name
- 11:17 AM feature request #8354: taxonomic registration search by name finds also typifications for this name
- Name types for genera can be found by entering the name (fake entry for "Phacus"). Ticket might be closed (but see Pl...
- 11:02 AM task #8201: test all delete functionality in the RegistrationUI
- Wolf-Henning Kusber wrote:
> Article not linked to any registration can be deleted without problem.
... but is no... - 10:50 AM task #8201: test all delete functionality in the RegistrationUI
- Delete button is available for references with registrations. Trying to delete (which realy does not any sense) produ...
- 10:43 AM task #8201: test all delete functionality in the RegistrationUI
- Article not linked to any registration can be deleted without problem.
- 10:36 AM task #8201: test all delete functionality in the RegistrationUI
- Saved specimen type in Registration (preparation): full functionality.
Saved name specimen type in Registration (pre...
07/05/2019
- 08:19 PM feature request #8352: name page: show nomenclatorical acts
- Example for checking (including data cleaning issues to be solved by whk):
Achnanthes austriaca
name is not regis... - 12:00 AM feature request #8352: name page: show nomenclatorical acts
- please review
- 07:58 PM feature request #8354: taxonomic registration search by name finds also typifications for this name
- Lectotypes/Epitypes of names are found by th name. Issue solved.
For name types of rank=genus and higher no data a... - 12:02 AM feature request #8354 (Resolved): taxonomic registration search by name finds also typifications for this name
- done. please review
- 07:33 PM feature request #8351: name page: show type designations with map
- Sorry, an issue for georeferences not entered. Please see:
Eunotia tauntoniensis Hust. Type: United States of Americ... - 11:57 AM feature request #8351: name page: show type designations with map
- Works fine, ticket can be closed.
- 12:02 AM feature request #8351: name page: show type designations with map
- please review
07/04/2019
- 10:39 PM feature request #8352 (Resolved): name page: show nomenclatorical acts
- Applied in changeset commit:cdm-dataportal|efff6ee1db489abd192b1193e652f25978fc2441.
- 07:06 PM feature request #8352 (Closed): name page: show nomenclatorical acts
- show Registrations on the name page
- 10:39 PM feature request #8351 (Resolved): name page: show type designations with map
- Applied in changeset commit:cdm-dataportal|14076b88ce598053035a48076f0a8f0af5c99cd3.
- 06:59 PM feature request #8351 (Closed): name page: show type designations with map
- show the name type and specimen type designations on the name page. In case the type specimens are having location da...
- 09:17 PM feature request #8354 (Closed): taxonomic registration search by name finds also typifications for this name
- The search for Registrations via the classification graph misses finding registrations with are only associated with ...
- 07:18 PM bug #8353 (New): nomenclatural and bibliographic in-reference displayed
- The nomenclatural author team is suplemented by the bibliographical author team, this is misleading.
Example: http... - 03:18 PM feature request #8256 (In Progress): Show all status preferences as table
- there is a table of all area specific status preferences on the admin distribution preference page. It is possible to...
- 02:11 PM bug #6380: typedesignations missing in homotypic group
- please review, e.g. at the example of http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/a6...
- 02:09 PM bug #6380 (Resolved): typedesignations missing in homotypic group
- Applied in changeset commit:cdm-dataportal|b059b449f976cd7e198a3e21c05e38fb038ba1eb.
- 01:17 PM bug #8349 (Closed): NPE in ParseHandler when parsing name without nomencl reference
- Tested local hotfix branch. Created a new taxon and, in the name editor, added and edited misapplications and synonym...
- 11:55 AM bug #8349 (Resolved): NPE in ParseHandler when parsing name without nomencl reference
- please review, we need an hotfix because this error is always thrown if someone wants to create a new name without th...
- 11:51 AM bug #8349 (Closed): NPE in ParseHandler when parsing name without nomencl reference
- when parsing name without nomenclatural reference the following NPE is thrown:
~~~ text
Caused by: java.lang.Null... - 12:23 PM feature request #8283 (Resolved): Allow adding media to terms in taxeditor
- this seems to work now. (the details view is still empty when changing to referencing objects view, but adding the me...
- 12:01 PM bug #8347 (Closed): point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
- 09:50 AM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
- The isohypse is very helpfull.
Just a minor issue remaining, when trying to zoom into Berlin this is easy and fast... - 12:01 PM feature request #8350 (Closed): Search dialog for named areas should work with abbreviations
- The search dialog for named areas should be configurable whether the seach should be over the label, or one of the ab...
- 11:34 AM feature request #8346 (Closed): Curators and admins can edit arbitrary Annotations (Notes)
- Selecting no term type is ok. These annotations are handled as untyped.
The new termtype 'Public Note' needs to be... - 09:59 AM feature request #8346: Curators and admins can edit arbitrary Annotations (Notes)
- Fields are implemented. Additional field can be added.
Question: should we take one entry as default (e.g. edition... - 10:54 AM feature request #7620 (Closed): RegistrationSearch implemented with Reference filter
- 09:33 AM feature request #7620: RegistrationSearch implemented with Reference filter
- Perfectly solved! This enhances the usabiliy of PhycoBank significantly.
Search functionality is available for
st...
07/03/2019
- 06:19 PM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
- nicely done:
our example with NZ and DE: Planothidium victori:
http://test.e-taxonomy.eu/dataportal/preview/phyco... - 06:05 PM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
- issue solved, please review
- 04:02 PM bug #8347 (Resolved): point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
- Applied in changeset commit:cdm-dataportal|95aba8b561b3695d047b50a25a24fc41f1f83b32.
- 04:00 PM bug #8347 (Closed): point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
- example:
* https://www.phycobank.org/cdm_dataportal/taxon/6e0895b4-64ee-4b1a-ba87-403ee7888f94
* http://test.e-t... - 04:47 PM feature request #7620: RegistrationSearch implemented with Reference filter
- see above. The filter is not working.
With the given search strings all published registrations from new to old are ... - 12:57 PM feature request #7620: RegistrationSearch implemented with Reference filter
- The test server was not up to date. The problem which was causing this is fixed now. Please test again.
- 09:44 AM feature request #7620: RegistrationSearch implemented with Reference filter
- Field "Publication" available,
search functionality not given.
"Baikal" gives back Baikal-Taxa + African etc. taxa
... - 04:31 PM bug #8337: internal error, name type status missing, reference in name type not updated
- The duplicate type (first one) cannot be deleted in Vaadin, because it is not possible to open the record and to get ...
- 03:16 PM bug #8337 (Worksforme): internal error, name type status missing, reference in name type not updated
- This problem can not be reproduced on the test system. The duplicate name type designations can be removed by deletin...
07/02/2019
- 06:18 PM feature request #8346: Curators and admins can edit arbitrary Annotations (Notes)
- please review
(the solution is not a beauty but it is working!) - 06:17 PM feature request #8346 (Resolved): Curators and admins can edit arbitrary Annotations (Notes)
- Applied in changeset commit:cdm-vaadin|c02fc11ae73482b118a48cfb4fca97e7302bda1f.
- 05:58 PM feature request #8346 (Closed): Curators and admins can edit arbitrary Annotations (Notes)
- The FilterableAnnotationsField should offer the option to edit arbitrary notes (annotations) in all views where it is...
- 04:14 PM feature request #7620: RegistrationSearch implemented with Reference filter
- ready for review
- 03:15 PM feature request #7621 (Closed): registration search also covers typified names
- fully solved
- 03:14 PM feature request #8330 (Closed): RegistrationDao search method
- fully solved
- 03:11 PM bug #8287: RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
- please review
- 03:10 PM bug #8287 (Resolved): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
- Applied in changeset commit:cdmlib|c40f420c355ee29b3b31e575c8d630f59cf55c0e.
- 01:44 PM feature request #8345 (Closed): RegistrationListView: filter option for publication
- 01:42 PM feature request #8345 (Resolved): RegistrationListView: filter option for publication
- Applied in changeset commit:cdm-vaadin|c609114c696fe3512d2c485b9d4e6a1a52dafac9.
- 01:41 PM feature request #8345 (Closed): RegistrationListView: filter option for publication
- extend the existing filters by a text field for publication citation patterns
- 01:43 PM bug #7885 (In Progress): registration search by name finds also typifications for this name
- 01:43 PM bug #7885 (Closed): registration search by name finds also typifications for this name
- 12:59 PM bug #7885 (In Progress): registration search by name finds also typifications for this name
- 01:05 PM bug #8327 (Duplicate): record with publication date is competing with curation status, set to preparation or curation
- closing as duplicate
- 11:18 AM feature request #8342: shift field Field number
- This is potentially easy to fix, thus i am setting this to HIGHEST. If it is more time consuming we should downgrade ...
07/01/2019
- 02:45 PM feature request #6709 (Closed): Do not show UUID on media page
- Andreas Kohlbecker wrote:
> e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0b... - 02:42 PM feature request #6709: Do not show UUID on media page
- e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0bf650c-4cc6-4dfe-bb2f-a289b426...
- 10:45 AM feature request #6709 (Feedback): Do not show UUID on media page
- Andreas Kohlbecker wrote:
> HI Patrick, is this issue about the UUID being used as replacement for missing title att... - 01:42 PM feature request #8344 (Closed): Cdm light export: add dummy line in simple facts table
- Hallo Katja,
...
Dann etwas für den Release, wenn’s geht:
Ich verwende die SimpleFact Tabelle im weiteren Verlauf ... - 01:41 PM feature request #8294 (Resolved): Make display of ID in source and ID Namespace configurable
- please review
06/28/2019
- 02:05 PM feature request #8320 (Closed): Links to reference page as appendend icon instead of having the whole citation as link
- done
- 02:04 PM feature request #8320 (Resolved): Links to reference page as appendend icon instead of having the whole citation as link
- Applied in changeset commit:cdm-dataportal|2ffe4d59b3a9ac3747f0b94a761adf3ea0f6de59.
- 01:17 PM feature request #7620 (Resolved): RegistrationSearch implemented with Reference filter
- Applied in changeset commit:cdm-dataportal|384ff2ba6f98d8d869093ff4be0fea7eb81d7a0e.
06/27/2019
- 07:13 PM bug #8343 (Rejected): potential timezone problem in application stack
- I don't think that we are having a timezone shift problem since the date is stored in the db as 2018-06-11 22:00:00. ...
- 07:07 PM bug #8343 (Closed): potential timezone problem in application stack
- Ist denn genau definiert, um welche Zeitzone es sich handelt? Ich frage auch weil auf https://www.phycobank.org/cdm_d...
- 07:12 PM task #8118: Update MySQL drivers
- **The proper solution it the timezone problem is documented at MySqlFaq#The-server-time-zone-value-is-unrecognized**
- 07:03 PM feature request #8245 (Resolved): Improve representation of DescriptionElementBase.timeperiod
- done, for testing you can use for example http://edit.test/d7/reference_int/cdm_dataportal/taxon/c246856f-c03e-4cb7-a...
- 05:27 PM task #7269 (Closed): Use redmine as message hub for submitter curator communication
- even if it has been completely implemented this feature has been rejected afterwards
- 05:26 PM task #7269 (Rejected): Use redmine as message hub for submitter curator communication
- 05:00 PM feature request #4372 (In Progress): Selenium PortalPage class also suitable for zen-basetheme
- 02:26 PM task #7296 (Closed): externalize redmine api key
- all resources removed
- 02:20 PM task #4177 (Resolved): display of name relationships in synonymy broken
- I detached the task #5856: "[DISCUSS] Consider implementing additional name relationships" from this issue so that we...
- 10:34 AM feature request #7408 (Feedback): [E+M] Support for preferred common names in data portal
- Is this ticket still relevant. I seem to remember that the preferred common names are currently in discussion.
- 10:25 AM bug #8050 (Closed): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- Okay, da offene Punkt auch mit Workflows zu tun hat, sollten wir den kommende Woche diskutieren. Schließe wie besproc...
- 09:04 AM bug #8050 (Resolved): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- Wolf-Henning Kusber wrote:
> Das Problem in !#11 und !#12:
>
> Konkret möchte ich für einen existierenden Namen, ...
06/26/2019
- 05:52 PM feature request #6709 (Resolved): Do not show UUID on media page
- done
- 05:11 PM feature request #6709: Do not show UUID on media page
- hi Patrick, could you please answer on my question?
- 05:51 PM feature request #6316 (Resolved): display source references of media objects in media page
- done and also test implemented.
- 04:59 PM bug #8321: Namepage shows wrong taxa as related to the name
- Both Eunotia krammeri with different Author teams are not mixed anymore. The described problem is solved and the tick...
- 04:49 PM feature request #8342: shift field Field number
- Avoid overlap with collection date fields
- 04:47 PM feature request #8342 (Closed): shift field Field number
- see screen shot
 - 04:33 PM feature request #8341 (New): status without scroll bar
reference detail not realy needed in our project. This could be as small as possible. It w...- 03:38 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- Das Problem in !#11 und !#12:
Konkret möchte ich für einen existierenden Namen, z.B. "Micrasterias" einen (Namens-... - 01:59 PM task #5857 (Resolved): show nomenclatural status for for representations of TaxonName
- Andreas Kohlbecker wrote:
> we (Andreas & Henning) decided to move the footnote in front of the relationship label d... - 12:48 PM bug #8340 (Rejected): is accepted for Footnotes missing and with wrong index
- The option "Display is accepted for ... on taxon pages when coming from a synonym link." needs to be turned on for th...
06/25/2019
- 05:41 PM feature request #8304: Name page redirects to according taxon depending on query parameter
- The layout settings page () now offers the following checkbox:
 - 04:47 PM feature request #8304: Name page redirects to according taxon depending on query parameter
- The suggestion made in the issue description to use the name render templates to fine tune the behavior of the autore...
- 03:47 PM feature request #8304: Name page redirects to according taxon depending on query parameter
- Hallo,
ich bemerke gerade eine Veränderung in der Anzeige von Homonymbeziehungen:
Wenn ich in http://cichori... - 01:28 PM feature request #8339 (New): Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
- 'acceptedFor' parameter which is used by the synonym page can potentially be replaced or removed.
this parameter i... - 11:18 AM bug #8338 (New): Newly created structural modifier terms are not available in details view
- steps to reproduce
1. Create a character in the character editor
1. Look at the available "Structural Modifiers" ...
06/24/2019
- 11:35 AM bug #8337 (Worksforme): internal error, name type status missing, reference in name type not updated
- In the normal workflow a prelininary reference title was databased, than a new genus, a new species, than a name type...
06/20/2019
- 12:49 PM task #8336 (Duplicate): Unignore FeatureTest
- Since FeatureNode and Tree was moved to term package it does not work anymore
eu.etaxonomy.cdm.io.jaxb.FeatureTest
06/19/2019
- 05:02 PM feature request #8335 (Closed): Store character matrix table state as DB preference
- 01:24 PM bug #8332 (Closed): Excel matrix exports only the visible rows
- Tilo tested on nightly. Works fine.
- 12:22 PM bug #8332 (Resolved): Excel matrix exports only the visible rows
- Applied in changeset commit:taxeditor|34227fd826d1fd6e43b82f22ec35a5123bc9d813.
- 01:23 PM feature request #8333 (Closed): Show modifiers for states in Character Matrix
- Tilo tested on nightly. Works fine.
- 11:20 AM feature request #8334 (Closed): Move sources for type designations to details view
- Move sources for type designations to details view and remove them from the supplemental data view.
06/18/2019
- 06:49 PM feature request #8333 (Resolved): Show modifiers for states in Character Matrix
- Applied in changeset commit:taxeditor|9c38452812e67e28a5d1dfa09addf7ec9da01c28.
- 06:48 PM feature request #8333 (Closed): Show modifiers for states in Character Matrix
- 03:31 PM bug #8332 (Closed): Excel matrix exports only the visible rows
- When opening a character matrix and exporting it to excel only the visible rows are exported.
Once scrolled down s...
06/17/2019
- 01:21 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
- Tilo tested on nightly. Works as expected.
- 01:13 PM bug #8313 (Resolved): Multiple categorical data get deleted when clicked on in Character Matrix
- Fixed with commit:taxeditor|270642049c506384a9dc6f4d398e5fdabe4ddf47
06/13/2019
- 09:30 AM bug #8331 (New): Editor is unresponsive after sec reference replacement
- mail WB:
Betreff: TaxEditor hängt nach Subtree Sec-Replacement
Hallo,
inzwischen gemerkt – tut er nicht, aber:...
06/12/2019
- 12:41 PM bug #8260 (Resolved): Details and Supplemental Data View do not save the expansion state of sections
- This should now be fixed. The state of all subsections was not saved before.
- 10:30 AM feature request #8283: Allow adding media to terms in taxeditor
- Andreas Müller wrote:
> The data may got lost the following way.
>
> * Open term
> * add media
> * open referen... - 10:16 AM feature request #8283: Allow adding media to terms in taxeditor
- Andreas Müller wrote:
> PP just added some more code. Could you check if this also needs to be cherry picked.
> Rev... - 10:26 AM feature request #8257 (Closed): Remove factory methods for term node creation
06/11/2019
- 04:25 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- now, the vocabulary defined in the distribution editor preference is used for the area filter
- 03:03 PM feature request #8293 (In Progress): Distribution preferences for details view should be serverside preferences
- 03:02 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- now the distribution status comes from the same preference and the input of the combo box is updated depending on the...
- 02:29 PM feature request #8323 (Resolved): Make nom.status and rank lists a CdmPreference
- please review
- 12:11 PM feature request #8323 (In Progress): Make nom.status and rank lists a CdmPreference
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