Project

General

Profile

Activity

From 06/05/2019 to 07/04/2019

07/04/2019

10:40 PM Revision 0fb7c9e1 (cdmlib): ref #8352 controller and service to find registrations by name
Andreas Kohlbecker
10:40 PM Revision 54e11d53 (cdmlib): ref #8354 implenting registration serch by taxonUUIDs which also cove...
Andreas Kohlbecker
10:40 PM Revision 5c530881 (cdmlib): RestrictionConverter converts uuid strings to UUID objetcs which have...
Andreas Kohlbecker
10:40 PM Revision 60ef4839 (cdmlib): cleaning up controller code
Andreas Kohlbecker
10:39 PM feature request #8352 (Resolved): name page: show nomenclatorical acts
Applied in changeset commit:cdm-dataportal|efff6ee1db489abd192b1193e652f25978fc2441. Andreas Kohlbecker
07:06 PM feature request #8352 (Closed): name page: show nomenclatorical acts
show Registrations on the name page Andreas Kohlbecker
10:39 PM feature request #8351 (Resolved): name page: show type designations with map
Applied in changeset commit:cdm-dataportal|14076b88ce598053035a48076f0a8f0af5c99cd3. Andreas Kohlbecker
06:59 PM feature request #8351 (Closed): name page: show type designations with map
show the name type and specimen type designations on the name page. In case the type specimens are having location da... Andreas Kohlbecker
10:38 PM Revision efff6ee1 (cdm-dataportal): fix #8352 name page showing registrations
Andreas Kohlbecker
09:17 PM feature request #8354 (Closed): taxonomic registration search by name finds also typifications fo...
The search for Registrations via the classification graph misses finding registrations with are only associated with ... Andreas Kohlbecker
07:18 PM bug #8353 (New): nomenclatural and bibliographic in-reference displayed
The nomenclatural author team is suplemented by the bibliographical author team, this is misleading.
Example: http...
Wolf-Henning Kusber
07:01 PM Revision 14076b88 (cdm-dataportal): fix #8351 showing type designations and map in name page
Andreas Kohlbecker
06:20 PM Revision 94a882ee (cdm-dataportal): ref #6380 fixing regression
Andreas Kohlbecker
05:40 PM Revision 84673358 (cdmlib): ref #8248, #6774 Adapt tests
Patrick Plitzner
05:39 PM Revision 016e854b (cdmlib): ref #6774 Export reference uuid
Patrick Plitzner
03:18 PM feature request #8256 (In Progress): Show all status preferences as table
there is a table of all area specific status preferences on the admin distribution preference page. It is possible to... Katja Luther
03:14 PM Revision 198c9340 (taxeditor): ref #8256: add table of all status preferences in preference page
Katja Luther
02:18 PM Revision d4e4df3f (cdmlib): ref #8248 Check for existing media and references
Patrick Plitzner
02:11 PM bug #6380: typedesignations missing in homotypic group
please review, e.g. at the example of http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/a6... Andreas Kohlbecker
02:09 PM bug #6380 (Resolved): typedesignations missing in homotypic group
Applied in changeset commit:cdm-dataportal|b059b449f976cd7e198a3e21c05e38fb038ba1eb. Andreas Kohlbecker
02:09 PM Revision b059b449 (cdm-dataportal): fix #6380 collecting all type designations of the whole synon...
Andreas Kohlbecker
01:43 PM Revision 98dab2ca (taxeditor): Merge branch 'hotfix/5.7.4'
jenkins
01:29 PM Revision 4059e0ea (cdmlib): ref #8248, #6774 Fix order of term import
- add top level term property to import/export Patrick Plitzner
01:29 PM Revision 81198ab4 (cdmlib): ref #8248 Fix possible NPE
Patrick Plitzner
01:29 PM Revision 71e60ad9 (cdmlib): ref #6774 Move recursive model export to util class
Patrick Plitzner
01:27 PM Revision a63ffc14 (cdmlib): adding AnnotationType to getEmptyDefinedTermBase()
Andreas Kohlbecker
01:17 PM bug #8349 (Closed): NPE in ParseHandler when parsing name without nomencl reference
Tested local hotfix branch. Created a new taxon and, in the name editor, added and edited misapplications and synonym... Patrick Plitzner
11:55 AM bug #8349 (Resolved): NPE in ParseHandler when parsing name without nomencl reference
please review, we need an hotfix because this error is always thrown if someone wants to create a new name without th... Katja Luther
11:51 AM bug #8349 (Closed): NPE in ParseHandler when parsing name without nomencl reference
when parsing name without nomenclatural reference the following NPE is thrown:
~~~ text
Caused by: java.lang.Null...
Katja Luther
12:23 PM feature request #8283 (Resolved): Allow adding media to terms in taxeditor
this seems to work now. (the details view is still empty when changing to referencing objects view, but adding the me... Katja Luther
12:06 PM Revision 76c739e8 (taxeditor): fix NPE in ParseHandler
Katja Luther
12:01 PM bug #8347 (Closed): point map zooms to wrong area when using sphericalMercator maps like OpenTopo...
Andreas Kohlbecker
09:50 AM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
The isohypse is very helpfull.
Just a minor issue remaining, when trying to zoom into Berlin this is easy and fast...
Wolf-Henning Kusber
12:01 PM feature request #8350 (In Progress): Search dialog for Named Areas should work with abbreviations
The search dialog for named areas should be configurable whether the seach should be over the label, or one of the ab... Katja Luther
11:48 AM Revision 9ce386b8 (taxeditor): fix NPE in ParseHandler
Katja Luther
11:34 AM feature request #8346 (Closed): Curators and admins can edit arbitrary Annotations (Notes)
Selecting no term type is ok. These annotations are handled as untyped.
The new termtype 'Public Note' needs to be...
Andreas Kohlbecker
09:59 AM feature request #8346: Curators and admins can edit arbitrary Annotations (Notes)
Fields are implemented. Additional field can be added.
Question: should we take one entry as default (e.g. edition...
Wolf-Henning Kusber
10:54 AM feature request #7620 (Closed): RegistrationSearch implemented with Reference filter
Andreas Kohlbecker
09:33 AM feature request #7620: RegistrationSearch implemented with Reference filter
Perfectly solved! This enhances the usabiliy of PhycoBank significantly.
Search functionality is available for
st...
Wolf-Henning Kusber

07/03/2019

06:32 PM Revision b654a866 (cdm-dataportal): centralizing ckeck for Java-script developer mode
Andreas Kohlbecker
06:19 PM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
nicely done:
our example with NZ and DE: Planothidium victori:
http://test.e-taxonomy.eu/dataportal/preview/phyco...
Wolf-Henning Kusber
06:05 PM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
issue solved, please review Andreas Kohlbecker
04:02 PM bug #8347 (Resolved): point map zooms to wrong area when using sphericalMercator maps like OpenTo...
Applied in changeset commit:cdm-dataportal|95aba8b561b3695d047b50a25a24fc41f1f83b32. Andreas Kohlbecker
04:00 PM bug #8347 (Closed): point map zooms to wrong area when using sphericalMercator maps like OpenTopo...
example:
* https://www.phycobank.org/cdm_dataportal/taxon/6e0895b4-64ee-4b1a-ba87-403ee7888f94
* http://test.e-t...
Andreas Kohlbecker
05:59 PM Revision d30b89de (cdm-dataportal): replacing fixed background color yellow by class attribute 'r...
Andreas Kohlbecker
04:47 PM feature request #7620: RegistrationSearch implemented with Reference filter
see above. The filter is not working.
With the given search strings all published registrations from new to old are ...
Wolf-Henning Kusber
12:57 PM feature request #7620: RegistrationSearch implemented with Reference filter
The test server was not up to date. The problem which was causing this is fixed now. Please test again. Andreas Kohlbecker
09:44 AM feature request #7620: RegistrationSearch implemented with Reference filter
Field "Publication" available,
search functionality not given.
"Baikal" gives back Baikal-Taxa + African etc. taxa
...
Wolf-Henning Kusber
04:31 PM bug #8337: internal error, name type status missing, reference in name type not updated
The duplicate type (first one) cannot be deleted in Vaadin, because it is not possible to open the record and to get ... Wolf-Henning Kusber
03:16 PM bug #8337 (Worksforme): internal error, name type status missing, reference in name type not updated
This problem can not be reproduced on the test system. The duplicate name type designations can be removed by deletin... Andreas Kohlbecker
04:28 PM Revision 9f567421 (taxeditor): Updated version in pom / project files to taxeditor version : 5.7....
jenkins
04:02 PM Revision 40308723 (cdm-dataportal): avoiding php warning due to uninitialized variable
Andreas Kohlbecker
04:01 PM Revision 95aba8b5 (cdm-dataportal): fix #8347 fixing wrong projection transformation for data maps
Andreas Kohlbecker
02:16 PM Revision 738771f2 (cdm-dataportal): wrapping 'no associated taxon' message in div to allow styling
Andreas Kohlbecker
02:15 PM Revision 7ff3b0ef (cdm-dataportal): wrapping 'no associated taxon' message in div to allow styling
Andreas Kohlbecker
12:49 PM Revision 6403c1de (cdmlib): code cleaning
Katja Luther
11:11 AM Revision 49d17d7d (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.9.0-SN...
jenkins
10:27 AM Revision 600fbce8 (cdm-webapp): changing wp5.e-taxonomy.eu/mavenrepo to cybertaxonomy.eu/mavenrepo
Andreas Kohlbecker

07/02/2019

06:18 PM feature request #8346: Curators and admins can edit arbitrary Annotations (Notes)
please review
(the solution is not a beauty but it is working!)
Andreas Kohlbecker
06:17 PM feature request #8346 (Resolved): Curators and admins can edit arbitrary Annotations (Notes)
Applied in changeset commit:cdm-vaadin|c02fc11ae73482b118a48cfb4fca97e7302bda1f. Andreas Kohlbecker
05:58 PM feature request #8346 (Closed): Curators and admins can edit arbitrary Annotations (Notes)
The FilterableAnnotationsField should offer the option to edit arbitrary notes (annotations) in all views where it is... Andreas Kohlbecker
06:17 PM Revision c02fc11a (cdm-vaadin): fix #8346 flexible editing of annotations for Curator and Admin r...
Andreas Kohlbecker
04:51 PM Revision 1cdc1f46 (cdmlib): using CleanSweepInsertLoadStrategy in SecurityTest
Andreas Kohlbecker
04:42 PM Revision 1c2aeca4 (cdmlib): adding missing REGISTRATION* tables to the ClearDBDataSet.xml
Andreas Kohlbecker
04:17 PM Revision 5f71008d (cdmlib): using CleanSweepInsertLoadStrategy in DerivedUnitConverterIntegration...
Andreas Kohlbecker
04:14 PM feature request #7620: RegistrationSearch implemented with Reference filter
ready for review Andreas Kohlbecker
04:14 PM Revision c5089cec (cdm-dataportal): ref #7620 reference filter options for the Registration search
Andreas Kohlbecker
04:08 PM Revision 824ae003 (cdm-dataportal): ref #8320 fixing tab color specificity probelm
Andreas Kohlbecker
03:19 PM Revision 88131480 (cdm-dataportal): ref #8287 re-enabling type status filter multiple options
Andreas Kohlbecker
03:18 PM Revision bb5a542c (cdm-dataportal): typo
Andreas Kohlbecker
03:15 PM feature request #7621 (Closed): registration search also covers typified names
fully solved Andreas Kohlbecker
03:14 PM feature request #8330 (Closed): RegistrationDao search method
fully solved Andreas Kohlbecker
03:11 PM bug #8287: RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) f...
please review Andreas Kohlbecker
03:10 PM bug #8287 (Resolved): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUu...
Applied in changeset commit:cdmlib|c40f420c355ee29b3b31e575c8d630f59cf55c0e. Andreas Kohlbecker
03:10 PM Revision c40f420c (cdmlib): fix #8287 implementing support for null type status as filter value i...
Andreas Kohlbecker
02:31 PM Revision f54d835b (cdmlib): Revert "adding missing MatchMode in createRestriction()"
This reverts commit 1eca13fafa584494a9300c1a6844d435ca5ae897. Andreas Kohlbecker
02:07 PM Revision c1f34da9 (cdmlib): ref #8248 Add character to export (partially)
Patrick Plitzner
01:44 PM feature request #8345 (Closed): RegistrationListView: filter option for publication
Andreas Kohlbecker
01:42 PM feature request #8345 (Resolved): RegistrationListView: filter option for publication
Applied in changeset commit:cdm-vaadin|c609114c696fe3512d2c485b9d4e6a1a52dafac9. Andreas Kohlbecker
01:41 PM feature request #8345 (Closed): RegistrationListView: filter option for publication
extend the existing filters by a text field for publication citation patterns Andreas Kohlbecker
01:43 PM bug #7885 (In Progress): registration search by name finds also typifications for this name
Andreas Kohlbecker
01:43 PM bug #7885 (Closed): registration search by name finds also typifications for this name
Andreas Kohlbecker
12:59 PM bug #7885 (In Progress): registration search by name finds also typifications for this name
Andreas Kohlbecker
01:42 PM Revision c609114c (cdm-vaadin): fix #8345 adding filter text field for publications in Registrati...
Andreas Kohlbecker
01:37 PM Revision 44787444 (cdmlib): ignoring RedmineRegistrationMessageServiceTest since RedmineRegistrat...
Andreas Kohlbecker
01:34 PM Revision 1eca13fa (cdmlib): adding missing MatchMode in createRestriction()
Andreas Kohlbecker
01:05 PM bug #8327 (Duplicate): record with publication date is competing with curation status, set to pre...
closing as duplicate Andreas Kohlbecker
11:48 AM Revision ff454f55 (cdm-dataportal): ref #8182: use bgbm-import instead of ip address
Katja Luther
11:18 AM feature request #8342: shift field Field number
This is potentially easy to fix, thus i am setting this to HIGHEST. If it is more time consuming we should downgrade ... Andreas Kohlbecker
11:01 AM Revision f60b52c4 (cdm-dataportal): ref #8182: Dna should be DNA
Katja Luther
10:41 AM Revision c7637ad4 (cdmlib): fix failing test (add anywher to createRestrictions)
Katja Luther

07/01/2019

06:52 PM Revision f69d6df9 (cdmlib): ref #8330 removing unused and obsolete service methods which are repl...
Andreas Kohlbecker
06:35 PM Revision 69fd8336 (cdmlib): ref #7620 rest service /registrationDTO/find with filter string for r...
Andreas Kohlbecker
06:32 PM Revision 58cbdc8e (cdmlib): ref #7620 filtered registration search implemented with filter string...
Andreas Kohlbecker
05:07 PM Revision fbe02574 (cdmlib): ref #8330 ref #7885 removing confusing typo in test data
Andreas Kohlbecker
04:31 PM Revision bae3fd55 (cdmlib): ref #7885 tests for registration search by typified name and implemen...
Andreas Kohlbecker
03:28 PM Revision 9ccf877c (cdmlib): ref #8330 dao method for filtered registration search implemented: re...
Andreas Kohlbecker
02:45 PM feature request #6709 (Closed): Do not show UUID on media page
Andreas Kohlbecker wrote:
> e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0b...
Patrick Plitzner
02:42 PM feature request #6709: Do not show UUID on media page
e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0bf650c-4cc6-4dfe-bb2f-a289b426... Andreas Kohlbecker
10:45 AM feature request #6709 (Feedback): Do not show UUID on media page
Andreas Kohlbecker wrote:
> HI Patrick, is this issue about the UUID being used as replacement for missing title att...
Patrick Plitzner
01:51 PM Revision d0bdcc3f (cdmlib): ref #8330 implementing tests for RegsitrationService.page and Registr...
Andreas Kohlbecker
01:51 PM Revision c2447263 (cdmlib): ref #8330 completing documentation regarding wildcards and fixing bug...
Andreas Kohlbecker
01:51 PM Revision 84cd43e7 (cdmlib): ref #8330 documentation for RegistrationService.page and Registration...
Andreas Kohlbecker
01:43 PM Revision caa17126 (cdmlib): ref #8344: add dummy line in empty simple facts table
Katja Luther
01:42 PM feature request #8344 (Feedback): cdm light export: add dummy line in simpla facts table
Hallo Katja,
...
Dann etwas für den Release, wenn’s geht:
Ich verwende die SimpleFact Tabelle im weiteren Verlauf ...
Katja Luther
01:41 PM feature request #8294 (Resolved): Make display of ID in source and ID Namespace configurable
please review Katja Luther

06/28/2019

02:05 PM feature request #8320 (Closed): Links to reference page as appendend icon instead of having the w...
done Andreas Kohlbecker
02:04 PM feature request #8320 (Resolved): Links to reference page as appendend icon instead of having the...
Applied in changeset commit:cdm-dataportal|2ffe4d59b3a9ac3747f0b94a761adf3ea0f6de59. Andreas Kohlbecker
02:04 PM Revision 2ffe4d59 (cdm-dataportal): fix #8320 links to references as appended icon & custom icon ...
- theme method extended by second doIconLink attribute
- all usages of the theme methods with icon link except for r...
Andreas Kohlbecker
01:17 PM feature request #7620 (Resolved): RegistrationSearch implemented with Reference filter
Applied in changeset commit:cdm-dataportal|384ff2ba6f98d8d869093ff4be0fea7eb81d7a0e. Andreas Kohlbecker
01:16 PM Revision 384ff2ba (cdm-dataportal): fix #7620 links to references as appended icon link & new cus...
- theme method extended by second doIconLink attribute
- all usages of the theme methods with icon link except for r...
Andreas Kohlbecker
01:05 PM Revision f45c46ef (cdm-dataportal): updating information on compass version
Andreas Kohlbecker
11:47 AM Revision a4f3f99c (taxeditor): ref #8294: add preference page for id in namespace and namespace i...
Katja Luther

06/27/2019

07:13 PM bug #8343 (Rejected): potential timezone problem in application stack
I don't think that we are having a timezone shift problem since the date is stored in the db as 2018-06-11 22:00:00. ... Andreas Kohlbecker
07:07 PM bug #8343 (Feedback): potential timezone problem in application stack
Ist denn genau definiert, um welche Zeitzone es sich handelt? Ich frage auch weil auf https://www.phycobank.org/cdm_d... Andreas Kohlbecker
07:12 PM task #8118: Update MySQL drivers
**The proper solution it the timezone problem is documented at MySqlFaq#The-server-time-zone-value-is-unrecognized** Andreas Kohlbecker
07:03 PM feature request #8245 (Resolved): Improve representation of DescriptionElementBase.timeperiod
done, for testing you can use for example http://edit.test/d7/reference_int/cdm_dataportal/taxon/c246856f-c03e-4cb7-a... Andreas Kohlbecker
05:27 PM task #7269 (Closed): Use redmine as message hub for submitter curator communication
even if it has been completely implemented this feature has been rejected afterwards Andreas Kohlbecker
05:26 PM task #7269 (Rejected): Use redmine as message hub for submitter curator communication
Andreas Kohlbecker
05:21 PM Revision ef6a4ce9 (cdm-dataportal): ref #8245 stripping trailing zeros in description element tim...
Andreas Kohlbecker
05:19 PM Revision ee5d420b (cdm-dataportal): ref #4372 page elements DupalBlock and FeatureBlock compatibl...
Andreas Kohlbecker
05:00 PM feature request #4372 (In Progress): Selenium PortalPage class also suitable for zen-basetheme
Andreas Kohlbecker
04:59 PM Revision 1b1c2bc9 (cdm-dataportal): ref #4372 page elementd DupalBlock and FeatureBlock compatibl...
Andreas Kohlbecker
02:26 PM task #7296 (Closed): externalize redmine api key
all resources removed Andreas Kohlbecker
02:26 PM Revision 76eaf322 (cdmlib): ref #8321 cleaning up cotroller code
Andreas Kohlbecker
02:26 PM Revision 8ec6c716 (cdmlib): ref #7296 removing all config files related to the RemineMessagingSer...
Andreas Kohlbecker
02:23 PM Revision 605d9128 (taxeditor): minor - avoid NPE
Katja Luther
02:23 PM Revision b74a2730 (taxeditor): ref #7920: fix delete of preferences
Katja Luther
02:20 PM task #4177 (Resolved): display of name relationships in synonymy broken
I detached the task #5856: "[DISCUSS] Consider implementing additional name relationships" from this issue so that we... Andreas Kohlbecker
02:14 PM Revision 276ef31b (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxedito...
Katja Luther
02:12 PM Revision ef8972ee (taxeditor): smaller changes for abcd imports in tax editor
Katja Luther
02:11 PM Revision d9fabe96 (cdmlib): smaller changes in ABCD import - continue
Katja Luther
02:10 PM Revision 5479041f (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
02:09 PM Revision f769c20b (cdmlib): smaller changes in ABCD import
Katja Luther
10:34 AM feature request #7408 (Feedback): [E+M] Support for preferred common names in data portal
Is this ticket still relevant. I seem to remember that the preferred common names are currently in discussion. Andreas Kohlbecker
10:25 AM bug #8050 (Closed): Create blocking registrations for un-registered names which are to be used in...
Okay, da offene Punkt auch mit Workflows zu tun hat, sollten wir den kommende Woche diskutieren. Schließe wie besproc... Wolf-Henning Kusber
09:04 AM bug #8050 (Resolved): Create blocking registrations for un-registered names which are to be used ...
Wolf-Henning Kusber wrote:
> Das Problem in !#11 und !#12:
>
> Konkret möchte ich für einen existierenden Namen, ...
Andreas Kohlbecker
09:08 AM Revision 430b5a6c (cdmlib): ref #8182: minor
Katja Luther

06/26/2019

06:38 PM Revision 44707ee3 (cdm-dataportal): ref #6316 refactoring for cleaner original source code - bug fix
Andreas Kohlbecker
05:52 PM feature request #6709 (Resolved): Do not show UUID on media page
done Andreas Kohlbecker
05:11 PM feature request #6709: Do not show UUID on media page
hi Patrick, could you please answer on my question? Andreas Kohlbecker
05:51 PM feature request #6316 (Resolved): display source references of media objects in media page
done and also test implemented. Andreas Kohlbecker
05:50 PM Revision 20e02fff (cdm-dataportal): test for media page title ref #6709 and original source displ...
Andreas Kohlbecker
05:28 PM Revision 50d9206b (cdm-dataportal): ref #6709 better fallback strategy for media page titles
Andreas Kohlbecker
05:09 PM Revision 27bceb70 (cdm-dataportal): ref #6316 fixing two layout issues:
- html was processes as plain text
- removing URI from titlecache when type is WebPage
Andreas Kohlbecker
04:59 PM bug #8321: Namepage shows wrong taxa as related to the name
Both Eunotia krammeri with different Author teams are not mixed anymore. The described problem is solved and the tick... Wolf-Henning Kusber
04:49 PM feature request #8342: shift field Field number
Avoid overlap with collection date fields Wolf-Henning Kusber
04:47 PM feature request #8342 (Resolved): shift field Field number
see screen shot
![](picture731-1.png)
Wolf-Henning Kusber
04:46 PM Revision bb93d5d1 (cdm-dataportal): ref #6316 refactoring for cleaner original source code
Andreas Kohlbecker
04:33 PM feature request #8341 (New): status without scroll bar

![](picture563-1.png)
reference detail not realy needed in our project. This could be as small as possible. It w...
Wolf-Henning Kusber
03:38 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomencla...
Das Problem in !#11 und !#12:
Konkret möchte ich für einen existierenden Namen, z.B. "Micrasterias" einen (Namens-...
Wolf-Henning Kusber
02:13 PM Revision d2be662d (cdmlib): ref #8182: accession number is required in webservice
Katja Luther
01:59 PM task #5857 (Resolved): show nomenclatural status for for representations of TaxonName
Andreas Kohlbecker wrote:
> we (Andreas & Henning) decided to move the footnote in front of the relationship label d...
Andreas Kohlbecker
01:56 PM Revision 1ee58da8 (cdmlib): ref #8182: add header to failed response
Katja Luther
01:16 PM Revision ce347d23 (cdm-dataportal): ref #8182: add link to ncbi for blast result
Katja Luther
12:48 PM bug #8340 (New): is accepted for Footnotes missing and with wrong index
The option "Display is accepted for ... on taxon pages when coming from a synonym link." needs to be turned on for th... Andreas Kohlbecker
12:27 PM Revision 4366f68b (cdm-dataportal): fixing Undefined variable
Andreas Kohlbecker
10:05 AM Revision b3e21c63 (cdmlib): ref #8182: handle not existing dna for accession number
Katja Luther

06/25/2019

05:46 PM Revision 4c812e71 (cdm-dataportal): ref #8182: remove local server for blast ws and add collabsib...
Katja Luther
05:41 PM feature request #8304: Name page redirects to according taxon depending on query parameter
The layout settings page () now offers the following checkbox:
![](picture689-1.png)
Andreas Kohlbecker
04:47 PM feature request #8304: Name page redirects to according taxon depending on query parameter
The suggestion made in the issue description to use the name render templates to fine tune the behavior of the autore... Andreas Kohlbecker
03:47 PM feature request #8304: Name page redirects to according taxon depending on query parameter
Hallo,

ich bemerke gerade eine Veränderung in der Anzeige von Homonymbeziehungen:

Wenn ich in http://cichori...
Andreas Kohlbecker
05:37 PM Revision 14832ae9 (cdm-dataportal): ref #8304 global switch to enable the name page redirecting t...
Andreas Kohlbecker
04:59 PM Revision f264279e (cdm-dataportal): minor improvements regarding method documentation
Andreas Kohlbecker
02:35 PM Revision 9b9b5b41 (cdmlib): cdmlight: change area category to the area level
Katja Luther
01:39 PM Revision 833731f1 (cdmlib): ref #8248 Add feature to export (partially)
Patrick Plitzner
01:28 PM feature request #8339 (New): Completely remove the potentially redundant 'acceptedFor' parameter ...
'acceptedFor' parameter which is used by the synonym page can potentially be replaced or removed.
this parameter i...
Andreas Kohlbecker
11:18 AM bug #8338 (New): Newly created structural modifier terms are not available in details view
steps to reproduce
1. Create a character in the character editor
1. Look at the available "Structural Modifiers" ...
Patrick Plitzner
10:24 AM Revision 979d74e5 (cdmlib): ref #8248, #6774 Add character to export
- adapt test Patrick Plitzner

06/24/2019

02:48 PM Revision 2bbdfed5 (taxeditor): Add facet information to term search result composite
Patrick Plitzner
11:35 AM bug #8337 (Worksforme): internal error, name type status missing, reference in name type not updated
In the normal workflow a prelininary reference title was databased, than a new genus, a new species, than a name type... Wolf-Henning Kusber

06/21/2019

06:02 PM Revision 4c9c08a9 (taxeditor): ref #8248 Set import source citation in import wizard
Patrick Plitzner
05:59 PM Revision 82e317b8 (cdmlib): ref #8248, #6774 Add sources to import/export
Patrick Plitzner
02:18 PM Revision 2ac55f2d (cdmlib): ref #8248, #6774 Improve import/export performance
Patrick Plitzner

06/20/2019

05:27 PM Revision e9c37045 (taxeditor): ref #7589 Save matrix rows in one service call
Patrick Plitzner
02:46 PM Revision 723b8572 (taxeditor): ref #8335 minor fixes for active state evaluation
Patrick Plitzner
02:29 PM Revision ce524345 (taxeditor): ref #8335 Persist table state when dialog is closed
Patrick Plitzner
02:12 PM Revision c2e9c57b (taxeditor): ref #8335 Initially select default state + minor refactoring
Patrick Plitzner
01:27 PM Revision a8397603 (taxeditor): ref #8335 Add default state to table states
Patrick Plitzner
12:49 PM task #8336 (Duplicate): Unignore FeatureTest
Since FeatureNode and Tree was moved to term package it does not work anymore
eu.etaxonomy.cdm.io.jaxb.FeatureTest
Andreas Müller

06/19/2019

05:04 PM Revision 3bbff684 (cdmlib): ref #8335 Add character matrix table state DB preference
Patrick Plitzner
05:03 PM Revision 50c9c090 (taxeditor): ref #8335 Store character matrix table state as DB preference
Patrick Plitzner
05:02 PM feature request #8335 (Resolved): Store character matrix table state as DB preference
Patrick Plitzner
01:24 PM bug #8332 (Closed): Excel matrix exports only the visible rows
Tilo tested on nightly. Works fine. Patrick Plitzner
12:22 PM bug #8332 (Resolved): Excel matrix exports only the visible rows
Applied in changeset commit:taxeditor|34227fd826d1fd6e43b82f22ec35a5123bc9d813. Patrick Plitzner
01:23 PM feature request #8333 (Closed): Show modifiers for states in Character Matrix
Tilo tested on nightly. Works fine. Patrick Plitzner
12:21 PM Revision 7f3f2b38 (taxeditor): ref #7589 Layer refactoring for character matrix
Patrick Plitzner
12:17 PM Revision 34227fd8 (taxeditor): fix #8332 Scroll 1px before exporting to load all rows in tree format
Patrick Plitzner
11:20 AM feature request #8334 (Closed): Move sources for type designations to details view
Move sources for type designations to details view and remove them from the supplemental data view. Patrick Plitzner

06/18/2019

06:49 PM feature request #8333 (Resolved): Show modifiers for states in Character Matrix
Applied in changeset commit:taxeditor|9c38452812e67e28a5d1dfa09addf7ec9da01c28. Patrick Plitzner
06:48 PM feature request #8333 (Closed): Show modifiers for states in Character Matrix
Patrick Plitzner
06:49 PM Revision 9c384528 (taxeditor): fix #8333 Show modifiers for states in Character Matrix
Patrick Plitzner
03:31 PM bug #8332 (Closed): Excel matrix exports only the visible rows
When opening a character matrix and exporting it to excel only the visible rows are exported.
Once scrolled down s...
Patrick Plitzner

06/17/2019

05:11 PM Revision 3d4b3223 (cdmlib-apps): cleanup some production destinations
Andreas Müller
05:01 PM Revision f0f14283 (cdmlib-apps): cleanup some production destinations
Andreas Müller
04:01 PM Revision 8b33f310 (taxeditor): Fix GFBio spelling
Patrick Plitzner
03:41 PM Revision f9b7a561 (taxeditor): add dnaSource in abcd import wizard
Katja Luther
01:21 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
Tilo tested on nightly. Works as expected. Patrick Plitzner
01:13 PM bug #8313 (Resolved): Multiple categorical data get deleted when clicked on in Character Matrix
Fixed with commit:taxeditor|270642049c506384a9dc6f4d398e5fdabe4ddf47 Patrick Plitzner
12:09 PM Revision e1530610 (cdmlib): add hybrid name save to import base class
Andreas Müller
12:09 PM Revision aecb5658 (cdmlib): add E+M rank uuids to rank class
Andreas Müller
12:08 PM Revision d0c54e6d (cdmlib-apps): #2937 add hybrid name save to import base class
Andreas Müller
12:06 PM Revision c8a2de96 (cdmlib-apps): ref #5448 add Gefäßpflanzenimport in Excel (v1)
Andreas Müller
11:56 AM Revision 5b9d66b0 (cdmlib-apps): cleanup some production destinations
Andreas Müller
11:48 AM Revision 35e24b22 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
11:47 AM Revision 7900fbf1 (cdmlib): set dnaSource to null in test
Katja Luther
11:47 AM Revision e54a5a27 (cdmlib): ref #8248, #6774 Add progress monitor to import/export
Patrick Plitzner
10:48 AM Revision 15957179 (cdmlib): smaller changes in abcd import and cdm light export
Katja Luther
10:35 AM Revision f0fdfff0 (cdmlib): ref #6774 Add progress monitor to owl export
Patrick Plitzner

06/14/2019

05:55 PM Revision d703fe8b (cdmlib): ref #8248, #6774 Add media to import/export
Patrick Plitzner
11:58 AM Revision bf3145f7 (cdmlib): ref #8248 Only add term to vocabulary if term is newly created
Patrick Plitzner
11:53 AM Revision 3bb112a0 (cdmlib): ref #8248 Only add term to vocabulary if term is newly created
Patrick Plitzner
09:56 AM Revision 2b310e3a (taxeditor): Add context menu for structure/property tree creation
Patrick Plitzner

06/13/2019

04:56 PM Revision 27064204 (taxeditor): ref #7589 Fix multiple selection for categorical data in matrix ed...
Patrick Plitzner
01:15 PM Revision 555a414b (cdmlib): ref #8248, #6774 Add plural to import/export
- add test for plural and abbrevLabel Patrick Plitzner
09:49 AM Revision dd5402d9 (taxeditor): ref #8260 Fix version and UUID/ID section in supp data view
Patrick Plitzner
09:48 AM Revision de051e6a (cdmlib): ref #8248, #6774 Add symbol, symbol2 and idInVocabulary to import/export
- change rdf identifier to lowercase Patrick Plitzner
09:30 AM bug #8331 (New): Editor is unresponsive after sec reference replacement
mail WB:
Betreff: TaxEditor hängt nach Subtree Sec-Replacement
Hallo,
inzwischen gemerkt – tut er nicht, aber:...
Katja Luther

06/12/2019

12:41 PM bug #8260 (Resolved): Details and Supplemental Data View do not save the expansion state of sections
This should now be fixed. The state of all subsections was not saved before. Patrick Plitzner
12:39 PM Revision 98db3bf7 (taxeditor): ref #8260 Complete refactoring of expansion state saving
Patrick Plitzner
10:30 AM feature request #8283: Allow adding media to terms in taxeditor
Andreas Müller wrote:
> The data may got lost the following way.
>
> * Open term
> * add media
> * open referen...
Patrick Plitzner
10:16 AM feature request #8283: Allow adding media to terms in taxeditor
Andreas Müller wrote:
> PP just added some more code. Could you check if this also needs to be cherry picked.
> Rev...
Patrick Plitzner
10:26 AM feature request #8257 (Closed): Remove factory methods for term node creation
Patrick Plitzner

06/11/2019

04:25 PM feature request #8293: Distribution preferences for details view should be serverside preferences
now, the vocabulary defined in the distribution editor preference is used for the area filter Katja Luther
03:03 PM feature request #8293 (In Progress): Distribution preferences for details view should be serversi...
Katja Luther
03:02 PM feature request #8293: Distribution preferences for details view should be serverside preferences
now the distribution status comes from the same preference and the input of the combo box is updated depending on the... Katja Luther
03:37 PM Revision 91d58d15 (taxeditor): ref #8293: use distribution editor preference for area filter in d...
Katja Luther
02:51 PM Revision 63851d14 (taxeditor): ref #8293: update drop down when selection of area changed
Katja Luther
02:29 PM feature request #8323 (Resolved): Make nom.status and rank lists a CdmPreference
please review Katja Luther
12:11 PM feature request #8323 (In Progress): Make nom.status and rank lists a CdmPreference
Katja Luther
02:19 PM Revision b3e9c172 (taxeditor): ref #8323: add nomencl status type admin preference
Katja Luther
12:12 PM Revision a78e0414 (taxeditor): ref #8323: add rank preference to db prefs and use CheckBoxTreeCom...
Katja Luther

06/07/2019

05:58 PM feature request #8016 (Closed): Registration page: subheadline with event type
Andreas Kohlbecker
05:16 PM feature request #8016: Registration page: subheadline with event type
Ja, jetzt sieht es gut aus! Wolf-Henning Kusber
05:06 PM feature request #8016: Registration page: subheadline with event type
Problem gelöst: http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration/http%253A%252F%252... Andreas Kohlbecker
09:40 AM feature request #8016: Registration page: subheadline with event type
Wording is fine :)
Remaining issue: subheadline is not between identifier and name, but displaced within a nomencl...
Wolf-Henning Kusber
08:56 AM feature request #8016: Registration page: subheadline with event type
All suggestions and improvements are applied. Andreas Kohlbecker
04:59 PM Revision 5a4a32da (cdm-dataportal): ref #8016 registration event type representation: fixing posi...
Andreas Kohlbecker
04:24 PM feature request #7975: Implement a block to display name relations
In the developer standup today we almost already decided for adding an enumeration field to `NameRelationship` and to... Andreas Kohlbecker
09:17 AM feature request #7975: Implement a block to display name relations
Thanks, Andreas K.
@ Andreas M.: please keep in mind that some rules and/or article numbers of the ICN may change. I...
Wolf-Henning Kusber
09:05 AM feature request #7975 (Feedback): Implement a block to display name relations
I think that adding a second reference to the `NameRelationship` and to `NomenclaturalStatus` would not hurt but woul... Andreas Kohlbecker
08:55 AM Revision 0a02c62f (cdm-dataportal): ref #8016 registration event type representation: detail changes
Andreas Kohlbecker

06/06/2019

07:03 PM feature request #7975: Implement a block to display name relations
"the reference of a nom. status or name relationship is meant to say who says that this status/relationship exists. I... Wolf-Henning Kusber
02:13 PM feature request #7975: Implement a block to display name relations
As discussed the reference of a nom. status or name relationship is meant to say who says that this status/relationsh... Andreas Müller
06:42 PM feature request #8016: Registration page: subheadline with event type
Review:
Example http://phycobank.org/100005
Event: New name & new taxon & new nomeclatural type
Issue 1: nomecla...
Wolf-Henning Kusber
03:11 PM feature request #8016: Registration page: subheadline with event type
ready for review Andreas Kohlbecker
03:10 PM feature request #8016 (Resolved): Registration page: subheadline with event type
Applied in changeset commit:cdm-dataportal|b90ef61802d5882f5cf1b0b5a1c6cee8c32e3f61. Andreas Kohlbecker
06:00 PM bug #8287 (In Progress): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatu...
Andreas Kohlbecker
05:58 PM feature request #8330 (Closed): RegistrationDao search method
Due to the problems reported in #8287 a dedicated dao search method is needed. This method first of all needs to sup... Andreas Kohlbecker
03:10 PM Revision b90ef618 (cdm-dataportal): fix #8016 implementing display of registration event type
Andreas Kohlbecker
02:34 PM bug #8329: Multiple representations exception when adding name relationship with already existing...
If adding another name (without author Mill.) via relationship the problem does not appear while using Abies alba Mil... Andreas Müller
02:29 PM bug #8329 (New): Multiple representations exception when adding name relationship with already ex...
In E+M test I tried to a name relationship to Pinus picea (synonym for Abies alba) via Name editor.
I added name r...
Andreas Müller
01:57 PM Revision 72d57201 (cdm-dataportal): ref #8182: specimen tree is collapsable, blast result table w...
Katja Luther

06/05/2019

03:03 PM feature request #7438 (Closed): implement citation suggestion in dataportal
Works as expected. Open new ticket if details need to be changed Andreas Müller
02:31 PM task #8118: Update MySQL drivers
https://dev.mysql.com/doc/refman/8.0/en/time-zone-support.html Andreas Müller
02:04 PM bug #8315: Parsing existing references with inReferences changes the inReference
moved accidentaly back to 5.8 Andreas Müller
02:04 PM bug #8315 (Closed): Parsing existing references with inReferences changes the inReference
Andreas Müller
01:54 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > now that the changes made for this ticket are no longer causi...
Andreas Kohlbecker
01:31 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Kohlbecker wrote:
> now that the changes made for this ticket are no longer causing any problems I will do t...
Andreas Müller
12:25 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Therefore I do not agree to remove the method or to remove the MUST_EXIST_FILE (but we may remove if there is a bette... Andreas Müller
12:23 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Kohlbecker wrote:
> The Method `CdmUtils.getFolderSeperator()` is completely redundant since `File.separator...
Andreas Müller
12:14 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Kohlbecker wrote:
> > The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows sy...
Andreas Müller
01:42 PM Revision 182b1e60 (taxeditor): ref #8293: distribution details view uses the same status pref as ...
Katja Luther
01:19 PM feature request #8257 (Feedback): Remove factory methods for term node creation
should be fixed now and can be closed I guess Andreas Müller
01:17 PM feature request #8257 (Resolved): Remove factory methods for term node creation
Applied in changeset commit:cdmlib|179a846773ab7eec76e786dfafe5a84cdbdf7103. Andreas Müller
01:17 PM Revision 179a8467 (cdmlib): fix #8257 remove remaining deprecated FeatureNode.NewInstance method
Andreas Müller
11:04 AM task #5856 (New): [DISCUSS] Consider implemeting additional name relationships
Needs to be discussed. No action needed before. Andreas Müller
10:48 AM feature request #8293: Distribution preferences for details view should be serverside preferences
But in a way you are right and the details view when used via distribution editor and the distribution editor itself ... Andreas Müller
10:45 AM feature request #8293: Distribution preferences for details view should be serverside preferences
I didn't say we want 2, but we want it serverside, currently this is not yet the case. It should be 1 predicate I gue... Andreas Müller
09:53 AM feature request #8293 (Feedback): Distribution preferences for details view should be serverside ...
do we really want to have two different preferences? one for the distribution editor,one for the details view? Katja Luther
09:34 AM Revision 8e653279 (cdmlib): overwrite equals for taxonnodeDto
Katja Luther
 

Also available in: Atom

Add picture from clipboard (Maximum size: 40 MB)