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From 05/29/2019 to 06/27/2019

06/27/2019

07:13 PM bug #8343 (Rejected): potential timezone problem in application stack
I don't think that we are having a timezone shift problem since the date is stored in the db as 2018-06-11 22:00:00. ... Andreas Kohlbecker
07:07 PM bug #8343 (Feedback): potential timezone problem in application stack
Ist denn genau definiert, um welche Zeitzone es sich handelt? Ich frage auch weil auf https://www.phycobank.org/cdm_d... Andreas Kohlbecker
07:12 PM task #8118: Update MySQL drivers
**The proper solution it the timezone problem is documented at MySqlFaq#The-server-time-zone-value-is-unrecognized** Andreas Kohlbecker
07:03 PM feature request #8245 (Resolved): Improve representation of DescriptionElementBase.timeperiod
done, for testing you can use for example http://edit.test/d7/reference_int/cdm_dataportal/taxon/c246856f-c03e-4cb7-a... Andreas Kohlbecker
05:27 PM task #7269 (Closed): Use redmine as message hub for submitter curator communication
even if it has been completely implemented this feature has been rejected afterwards Andreas Kohlbecker
05:26 PM task #7269 (Rejected): Use redmine as message hub for submitter curator communication
Andreas Kohlbecker
05:21 PM Revision ef6a4ce9 (cdm-dataportal): ref #8245 stripping trailing zeros in description element tim...
Andreas Kohlbecker
05:19 PM Revision ee5d420b (cdm-dataportal): ref #4372 page elements DupalBlock and FeatureBlock compatibl...
Andreas Kohlbecker
05:00 PM feature request #4372 (In Progress): Selenium PortalPage class also suitable for zen-basetheme
Andreas Kohlbecker
04:59 PM Revision 1b1c2bc9 (cdm-dataportal): ref #4372 page elementd DupalBlock and FeatureBlock compatibl...
Andreas Kohlbecker
02:26 PM task #7296 (Closed): externalize redmine api key
all resources removed Andreas Kohlbecker
02:26 PM Revision 8ec6c716 (cdmlib): ref #7296 removing all config files related to the RemineMessagingSer...
Andreas Kohlbecker
02:26 PM Revision 76eaf322 (cdmlib): ref #8321 cleaning up cotroller code
Andreas Kohlbecker
02:23 PM Revision b74a2730 (taxeditor): ref #7920: fix delete of preferences
Katja Luther
02:23 PM Revision 605d9128 (taxeditor): minor - avoid NPE
Katja Luther
02:20 PM task #4177 (Resolved): display of name relationships in synonymy broken
I detached the task #5856: "[DISCUSS] Consider implementing additional name relationships" from this issue so that we... Andreas Kohlbecker
02:14 PM Revision 276ef31b (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxedito...
Katja Luther
02:12 PM Revision ef8972ee (taxeditor): smaller changes for abcd imports in tax editor
Katja Luther
02:11 PM Revision d9fabe96 (cdmlib): smaller changes in ABCD import - continue
Katja Luther
02:10 PM Revision 5479041f (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
02:09 PM Revision f769c20b (cdmlib): smaller changes in ABCD import
Katja Luther
10:34 AM feature request #7408 (Feedback): [E+M] Support for preferred common names in data portal
Is this ticket still relevant. I seem to remember that the preferred common names are currently in discussion. Andreas Kohlbecker
10:25 AM bug #8050 (Closed): Create blocking registrations for un-registered names which are to be used in...
Okay, da offene Punkt auch mit Workflows zu tun hat, sollten wir den kommende Woche diskutieren. Schließe wie besproc... Wolf-Henning Kusber
09:04 AM bug #8050 (Resolved): Create blocking registrations for un-registered names which are to be used ...
Wolf-Henning Kusber wrote:
> Das Problem in !#11 und !#12:
>
> Konkret möchte ich für einen existierenden Namen, ...
Andreas Kohlbecker
09:08 AM Revision 430b5a6c (cdmlib): ref #8182: minor
Katja Luther

06/26/2019

06:38 PM Revision 44707ee3 (cdm-dataportal): ref #6316 refactoring for cleaner original source code - bug fix
Andreas Kohlbecker
05:52 PM feature request #6709 (Resolved): Do not show UUID on media page
done Andreas Kohlbecker
05:11 PM feature request #6709: Do not show UUID on media page
hi Patrick, could you please answer on my question? Andreas Kohlbecker
05:51 PM feature request #6316 (Resolved): display source references of media objects in media page
done and also test implemented. Andreas Kohlbecker
05:50 PM Revision 20e02fff (cdm-dataportal): test for media page title ref #6709 and original source displ...
Andreas Kohlbecker
05:28 PM Revision 50d9206b (cdm-dataportal): ref #6709 better fallback strategy for media page titles
Andreas Kohlbecker
05:09 PM Revision 27bceb70 (cdm-dataportal): ref #6316 fixing two layout issues:
- html was processes as plain text
- removing URI from titlecache when type is WebPage
Andreas Kohlbecker
04:59 PM bug #8321: Namepage shows wrong taxa as related to the name
Both Eunotia krammeri with different Author teams are not mixed anymore. The described problem is solved and the tick... Wolf-Henning Kusber
04:49 PM feature request #8342: shift field Field number
Avoid overlap with collection date fields Wolf-Henning Kusber
04:47 PM feature request #8342 (Closed): shift field Field number
see screen shot
![](picture731-1.png)
Wolf-Henning Kusber
04:46 PM Revision bb93d5d1 (cdm-dataportal): ref #6316 refactoring for cleaner original source code
Andreas Kohlbecker
04:33 PM feature request #8341 (New): status without scroll bar

![](picture563-1.png)
reference detail not realy needed in our project. This could be as small as possible. It w...
Wolf-Henning Kusber
03:38 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomencla...
Das Problem in !#11 und !#12:
Konkret möchte ich für einen existierenden Namen, z.B. "Micrasterias" einen (Namens-...
Wolf-Henning Kusber
02:13 PM Revision d2be662d (cdmlib): ref #8182: accession number is required in webservice
Katja Luther
01:59 PM task #5857 (Resolved): show nomenclatural status for for representations of TaxonName
Andreas Kohlbecker wrote:
> we (Andreas & Henning) decided to move the footnote in front of the relationship label d...
Andreas Kohlbecker
01:56 PM Revision 1ee58da8 (cdmlib): ref #8182: add header to failed response
Katja Luther
01:16 PM Revision ce347d23 (cdm-dataportal): ref #8182: add link to ncbi for blast result
Katja Luther
12:48 PM bug #8340 (New): is accepted for Footnotes missing and with wrong index
The option "Display is accepted for ... on taxon pages when coming from a synonym link." needs to be turned on for th... Andreas Kohlbecker
12:27 PM Revision 4366f68b (cdm-dataportal): fixing Undefined variable
Andreas Kohlbecker
10:05 AM Revision b3e21c63 (cdmlib): ref #8182: handle not existing dna for accession number
Katja Luther

06/25/2019

05:46 PM Revision 4c812e71 (cdm-dataportal): ref #8182: remove local server for blast ws and add collabsib...
Katja Luther
05:41 PM feature request #8304: Name page redirects to according taxon depending on query parameter
The layout settings page () now offers the following checkbox:
![](picture689-1.png)
Andreas Kohlbecker
04:47 PM feature request #8304: Name page redirects to according taxon depending on query parameter
The suggestion made in the issue description to use the name render templates to fine tune the behavior of the autore... Andreas Kohlbecker
03:47 PM feature request #8304: Name page redirects to according taxon depending on query parameter
Hallo,

ich bemerke gerade eine Veränderung in der Anzeige von Homonymbeziehungen:

Wenn ich in http://cichori...
Andreas Kohlbecker
05:37 PM Revision 14832ae9 (cdm-dataportal): ref #8304 global switch to enable the name page redirecting t...
Andreas Kohlbecker
04:59 PM Revision f264279e (cdm-dataportal): minor improvements regarding method documentation
Andreas Kohlbecker
02:35 PM Revision 9b9b5b41 (cdmlib): cdmlight: change area category to the area level
Katja Luther
01:39 PM Revision 833731f1 (cdmlib): ref #8248 Add feature to export (partially)
Patrick Plitzner
01:28 PM feature request #8339 (New): Completely remove the potentially redundant 'acceptedFor' parameter ...
'acceptedFor' parameter which is used by the synonym page can potentially be replaced or removed.
this parameter i...
Andreas Kohlbecker
11:18 AM bug #8338 (New): Newly created structural modifier terms are not available in details view
steps to reproduce
1. Create a character in the character editor
1. Look at the available "Structural Modifiers" ...
Patrick Plitzner
10:24 AM Revision 979d74e5 (cdmlib): ref #8248, #6774 Add character to export
- adapt test Patrick Plitzner

06/24/2019

02:48 PM Revision 2bbdfed5 (taxeditor): Add facet information to term search result composite
Patrick Plitzner
11:35 AM bug #8337 (Worksforme): internal error, name type status missing, reference in name type not updated
In the normal workflow a prelininary reference title was databased, than a new genus, a new species, than a name type... Wolf-Henning Kusber

06/21/2019

06:02 PM Revision 4c9c08a9 (taxeditor): ref #8248 Set import source citation in import wizard
Patrick Plitzner
05:59 PM Revision 82e317b8 (cdmlib): ref #8248, #6774 Add sources to import/export
Patrick Plitzner
02:18 PM Revision 2ac55f2d (cdmlib): ref #8248, #6774 Improve import/export performance
Patrick Plitzner

06/20/2019

05:27 PM Revision e9c37045 (taxeditor): ref #7589 Save matrix rows in one service call
Patrick Plitzner
02:46 PM Revision 723b8572 (taxeditor): ref #8335 minor fixes for active state evaluation
Patrick Plitzner
02:29 PM Revision ce524345 (taxeditor): ref #8335 Persist table state when dialog is closed
Patrick Plitzner
02:12 PM Revision c2e9c57b (taxeditor): ref #8335 Initially select default state + minor refactoring
Patrick Plitzner
01:27 PM Revision a8397603 (taxeditor): ref #8335 Add default state to table states
Patrick Plitzner
12:49 PM task #8336 (Duplicate): Unignore FeatureTest
Since FeatureNode and Tree was moved to term package it does not work anymore
eu.etaxonomy.cdm.io.jaxb.FeatureTest
Andreas Müller

06/19/2019

05:04 PM Revision 3bbff684 (cdmlib): ref #8335 Add character matrix table state DB preference
Patrick Plitzner
05:03 PM Revision 50c9c090 (taxeditor): ref #8335 Store character matrix table state as DB preference
Patrick Plitzner
05:02 PM feature request #8335 (Closed): Store character matrix table state as DB preference
Patrick Plitzner
01:24 PM bug #8332 (Closed): Excel matrix exports only the visible rows
Tilo tested on nightly. Works fine. Patrick Plitzner
12:22 PM bug #8332 (Resolved): Excel matrix exports only the visible rows
Applied in changeset commit:taxeditor|34227fd826d1fd6e43b82f22ec35a5123bc9d813. Patrick Plitzner
01:23 PM feature request #8333 (Closed): Show modifiers for states in Character Matrix
Tilo tested on nightly. Works fine. Patrick Plitzner
12:21 PM Revision 7f3f2b38 (taxeditor): ref #7589 Layer refactoring for character matrix
Patrick Plitzner
12:17 PM Revision 34227fd8 (taxeditor): fix #8332 Scroll 1px before exporting to load all rows in tree format
Patrick Plitzner
11:20 AM feature request #8334 (Closed): Move sources for type designations to details view
Move sources for type designations to details view and remove them from the supplemental data view. Patrick Plitzner

06/18/2019

06:49 PM feature request #8333 (Resolved): Show modifiers for states in Character Matrix
Applied in changeset commit:taxeditor|9c38452812e67e28a5d1dfa09addf7ec9da01c28. Patrick Plitzner
06:48 PM feature request #8333 (Closed): Show modifiers for states in Character Matrix
Patrick Plitzner
06:49 PM Revision 9c384528 (taxeditor): fix #8333 Show modifiers for states in Character Matrix
Patrick Plitzner
03:31 PM bug #8332 (Closed): Excel matrix exports only the visible rows
When opening a character matrix and exporting it to excel only the visible rows are exported.
Once scrolled down s...
Patrick Plitzner

06/17/2019

05:11 PM Revision 3d4b3223 (cdmlib-apps): cleanup some production destinations
Andreas Müller
05:01 PM Revision f0f14283 (cdmlib-apps): cleanup some production destinations
Andreas Müller
04:01 PM Revision 8b33f310 (taxeditor): Fix GFBio spelling
Patrick Plitzner
03:41 PM Revision f9b7a561 (taxeditor): add dnaSource in abcd import wizard
Katja Luther
01:21 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
Tilo tested on nightly. Works as expected. Patrick Plitzner
01:13 PM bug #8313 (Resolved): Multiple categorical data get deleted when clicked on in Character Matrix
Fixed with commit:taxeditor|270642049c506384a9dc6f4d398e5fdabe4ddf47 Patrick Plitzner
12:09 PM Revision e1530610 (cdmlib): add hybrid name save to import base class
Andreas Müller
12:09 PM Revision aecb5658 (cdmlib): add E+M rank uuids to rank class
Andreas Müller
12:08 PM Revision d0c54e6d (cdmlib-apps): #2937 add hybrid name save to import base class
Andreas Müller
12:06 PM Revision c8a2de96 (cdmlib-apps): ref #5448 add Gefäßpflanzenimport in Excel (v1)
Andreas Müller
11:56 AM Revision 5b9d66b0 (cdmlib-apps): cleanup some production destinations
Andreas Müller
11:48 AM Revision 35e24b22 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
11:47 AM Revision 7900fbf1 (cdmlib): set dnaSource to null in test
Katja Luther
11:47 AM Revision e54a5a27 (cdmlib): ref #8248, #6774 Add progress monitor to import/export
Patrick Plitzner
10:48 AM Revision 15957179 (cdmlib): smaller changes in abcd import and cdm light export
Katja Luther
10:35 AM Revision f0fdfff0 (cdmlib): ref #6774 Add progress monitor to owl export
Patrick Plitzner

06/14/2019

05:55 PM Revision d703fe8b (cdmlib): ref #8248, #6774 Add media to import/export
Patrick Plitzner
11:58 AM Revision bf3145f7 (cdmlib): ref #8248 Only add term to vocabulary if term is newly created
Patrick Plitzner
11:53 AM Revision 3bb112a0 (cdmlib): ref #8248 Only add term to vocabulary if term is newly created
Patrick Plitzner
09:56 AM Revision 2b310e3a (taxeditor): Add context menu for structure/property tree creation
Patrick Plitzner

06/13/2019

04:56 PM Revision 27064204 (taxeditor): ref #7589 Fix multiple selection for categorical data in matrix ed...
Patrick Plitzner
01:15 PM Revision 555a414b (cdmlib): ref #8248, #6774 Add plural to import/export
- add test for plural and abbrevLabel Patrick Plitzner
09:49 AM Revision dd5402d9 (taxeditor): ref #8260 Fix version and UUID/ID section in supp data view
Patrick Plitzner
09:48 AM Revision de051e6a (cdmlib): ref #8248, #6774 Add symbol, symbol2 and idInVocabulary to import/export
- change rdf identifier to lowercase Patrick Plitzner
09:30 AM bug #8331 (New): Editor is unresponsive after sec reference replacement
mail WB:
Betreff: TaxEditor hängt nach Subtree Sec-Replacement
Hallo,
inzwischen gemerkt – tut er nicht, aber:...
Katja Luther

06/12/2019

12:41 PM bug #8260 (Resolved): Details and Supplemental Data View do not save the expansion state of sections
This should now be fixed. The state of all subsections was not saved before. Patrick Plitzner
12:39 PM Revision 98db3bf7 (taxeditor): ref #8260 Complete refactoring of expansion state saving
Patrick Plitzner
10:30 AM feature request #8283: Allow adding media to terms in taxeditor
Andreas Müller wrote:
> The data may got lost the following way.
>
> * Open term
> * add media
> * open referen...
Patrick Plitzner
10:16 AM feature request #8283: Allow adding media to terms in taxeditor
Andreas Müller wrote:
> PP just added some more code. Could you check if this also needs to be cherry picked.
> Rev...
Patrick Plitzner
10:26 AM feature request #8257 (Closed): Remove factory methods for term node creation
Patrick Plitzner

06/11/2019

04:25 PM feature request #8293: Distribution preferences for details view should be serverside preferences
now, the vocabulary defined in the distribution editor preference is used for the area filter Katja Luther
03:03 PM feature request #8293 (In Progress): Distribution preferences for details view should be serversi...
Katja Luther
03:02 PM feature request #8293: Distribution preferences for details view should be serverside preferences
now the distribution status comes from the same preference and the input of the combo box is updated depending on the... Katja Luther
03:37 PM Revision 91d58d15 (taxeditor): ref #8293: use distribution editor preference for area filter in d...
Katja Luther
02:51 PM Revision 63851d14 (taxeditor): ref #8293: update drop down when selection of area changed
Katja Luther
02:29 PM feature request #8323 (Resolved): Make nom.status and rank lists a CdmPreference
please review Katja Luther
12:11 PM feature request #8323 (In Progress): Make nom.status and rank lists a CdmPreference
Katja Luther
02:19 PM Revision b3e9c172 (taxeditor): ref #8323: add nomencl status type admin preference
Katja Luther
12:12 PM Revision a78e0414 (taxeditor): ref #8323: add rank preference to db prefs and use CheckBoxTreeCom...
Katja Luther

06/07/2019

05:58 PM feature request #8016 (Closed): Registration page: subheadline with event type
Andreas Kohlbecker
05:16 PM feature request #8016: Registration page: subheadline with event type
Ja, jetzt sieht es gut aus! Wolf-Henning Kusber
05:06 PM feature request #8016: Registration page: subheadline with event type
Problem gelöst: http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration/http%253A%252F%252... Andreas Kohlbecker
09:40 AM feature request #8016: Registration page: subheadline with event type
Wording is fine :)
Remaining issue: subheadline is not between identifier and name, but displaced within a nomencl...
Wolf-Henning Kusber
08:56 AM feature request #8016: Registration page: subheadline with event type
All suggestions and improvements are applied. Andreas Kohlbecker
04:59 PM Revision 5a4a32da (cdm-dataportal): ref #8016 registration event type representation: fixing posi...
Andreas Kohlbecker
04:24 PM feature request #7975: Implement a block to display name relations
In the developer standup today we almost already decided for adding an enumeration field to `NameRelationship` and to... Andreas Kohlbecker
09:17 AM feature request #7975: Implement a block to display name relations
Thanks, Andreas K.
@ Andreas M.: please keep in mind that some rules and/or article numbers of the ICN may change. I...
Wolf-Henning Kusber
09:05 AM feature request #7975 (Feedback): Implement a block to display name relations
I think that adding a second reference to the `NameRelationship` and to `NomenclaturalStatus` would not hurt but woul... Andreas Kohlbecker
08:55 AM Revision 0a02c62f (cdm-dataportal): ref #8016 registration event type representation: detail changes
Andreas Kohlbecker

06/06/2019

07:03 PM feature request #7975: Implement a block to display name relations
"the reference of a nom. status or name relationship is meant to say who says that this status/relationship exists. I... Wolf-Henning Kusber
02:13 PM feature request #7975: Implement a block to display name relations
As discussed the reference of a nom. status or name relationship is meant to say who says that this status/relationsh... Andreas Müller
06:42 PM feature request #8016: Registration page: subheadline with event type
Review:
Example http://phycobank.org/100005
Event: New name & new taxon & new nomeclatural type
Issue 1: nomecla...
Wolf-Henning Kusber
03:11 PM feature request #8016: Registration page: subheadline with event type
ready for review Andreas Kohlbecker
03:10 PM feature request #8016 (Resolved): Registration page: subheadline with event type
Applied in changeset commit:cdm-dataportal|b90ef61802d5882f5cf1b0b5a1c6cee8c32e3f61. Andreas Kohlbecker
06:00 PM bug #8287 (In Progress): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatu...
Andreas Kohlbecker
05:58 PM feature request #8330 (Closed): RegistrationDao search method
Due to the problems reported in #8287 a dedicated dao search method is needed. This method first of all needs to sup... Andreas Kohlbecker
03:10 PM Revision b90ef618 (cdm-dataportal): fix #8016 implementing display of registration event type
Andreas Kohlbecker
02:34 PM bug #8329: Multiple representations exception when adding name relationship with already existing...
If adding another name (without author Mill.) via relationship the problem does not appear while using Abies alba Mil... Andreas Müller
02:29 PM bug #8329 (Worksforme): Multiple representations exception when adding name relationship with alr...
In E+M test I tried to add a name relationship to Pinus picea (synonym for Abies alba) via Name editor.
I added na...
Andreas Müller
01:57 PM Revision 72d57201 (cdm-dataportal): ref #8182: specimen tree is collapsable, blast result table w...
Katja Luther

06/05/2019

03:03 PM feature request #7438 (Closed): implement citation suggestion in dataportal
Works as expected. Open new ticket if details need to be changed Andreas Müller
02:31 PM task #8118: Update MySQL drivers
https://dev.mysql.com/doc/refman/8.0/en/time-zone-support.html Andreas Müller
02:04 PM bug #8315: Parsing existing references with inReferences changes the inReference
moved accidentaly back to 5.8 Andreas Müller
02:04 PM bug #8315 (Closed): Parsing existing references with inReferences changes the inReference
Andreas Müller
01:54 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > now that the changes made for this ticket are no longer causi...
Andreas Kohlbecker
01:31 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Kohlbecker wrote:
> now that the changes made for this ticket are no longer causing any problems I will do t...
Andreas Müller
12:25 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Therefore I do not agree to remove the method or to remove the MUST_EXIST_FILE (but we may remove if there is a bette... Andreas Müller
12:23 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Kohlbecker wrote:
> The Method `CdmUtils.getFolderSeperator()` is completely redundant since `File.separator...
Andreas Müller
12:14 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Kohlbecker wrote:
> > The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows sy...
Andreas Müller
01:42 PM Revision 182b1e60 (taxeditor): ref #8293: distribution details view uses the same status pref as ...
Katja Luther
01:19 PM feature request #8257 (Feedback): Remove factory methods for term node creation
should be fixed now and can be closed I guess Andreas Müller
01:17 PM feature request #8257 (Resolved): Remove factory methods for term node creation
Applied in changeset commit:cdmlib|179a846773ab7eec76e786dfafe5a84cdbdf7103. Andreas Müller
01:17 PM Revision 179a8467 (cdmlib): fix #8257 remove remaining deprecated FeatureNode.NewInstance method
Andreas Müller
11:04 AM task #5856 (New): [DISCUSS] Consider implemeting additional name relationships
Needs to be discussed. No action needed before. Andreas Müller
10:48 AM feature request #8293: Distribution preferences for details view should be serverside preferences
But in a way you are right and the details view when used via distribution editor and the distribution editor itself ... Andreas Müller
10:45 AM feature request #8293: Distribution preferences for details view should be serverside preferences
I didn't say we want 2, but we want it serverside, currently this is not yet the case. It should be 1 predicate I gue... Andreas Müller
09:53 AM feature request #8293 (Feedback): Distribution preferences for details view should be serverside ...
do we really want to have two different preferences? one for the distribution editor,one for the details view? Katja Luther
09:34 AM Revision 8e653279 (cdmlib): overwrite equals for taxonnodeDto
Katja Luther

06/04/2019

10:22 PM Revision 9f2fa4a8 (cdmlib): ref #8047: configurable display of status in drop down, new enum and ...
Katja Luther
05:56 PM bug #8231 (Feedback): Name relation non
the above problem has now been solved in #8321. I think we can also close this issue here, or did I miss something? Andreas Kohlbecker
05:54 PM bug #8321: Namepage shows wrong taxa as related to the name
please review Andreas Kohlbecker
05:53 PM bug #8321 (Resolved): Namepage shows wrong taxa as related to the name
Applied in changeset commit:cdm-dataportal|fb308159d88b11b398e104e0e38231407049a7fe. Andreas Kohlbecker
05:52 PM Revision fb308159 (cdm-dataportal): fix #8321 finding taxa for a given name by matching whith the...
Andreas Kohlbecker
05:48 PM Revision 11847891 (taxeditor): ref #8047: configurable display of status in drop down
Katja Luther
05:46 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
I cleaned the ticket up as requested Andreas Kohlbecker
12:46 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
Be aware that this ticket has already status resolved in 5.1. It's task description should not be enlarged anymore if... Andreas Müller
12:44 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
Also this ticket is only about **E+M** data portal relevant webservices. For other webservices please use #7492. Andreas Müller
12:40 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
Can you please adapt the new information on *doPageByRestrictions* to the logic of the rest of the list? In general w... Andreas Müller
05:41 PM feature request #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
Sorry for misusing this ticket Andreas Kohlbecker
03:29 PM feature request #6678 (In Progress): [DISCUSS] How to correctly show name relationship "orth. var...
Andreas Müller
03:29 PM feature request #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
Andreas Kohlbecker wrote:
> please answer to the questions in comment 3
This is a DISCUSS ticket not an implement...
Andreas Müller
05:39 PM bug #8328 (Closed): Unpublished record visible in Portal if related name is published
Unpublished record visible in Portal if related name is published.
![](picture973-1.png)
Wolf-Henning Kusber
05:26 PM task #5857 (In Progress): show nomenclatural status for for representations of TaxonName
we (Andreas & Henning) decided to move the footnote in front of the relationship label depending on direction of the ... Andreas Kohlbecker
05:24 PM bug #8327 (Duplicate): record with publication date is competing with curation status, set to pre...
Example from the Test system:
Basionym: Fragilaria santaremensis = published (Vaadin UI set to published)
New com...
Wolf-Henning Kusber
03:54 PM Revision 1faab189 (taxeditor): Revert "mend"
This reverts commit 80379c19934c880a3631e83ffec07ef9215b2378. Katja Luther
03:46 PM Revision 80379c19 (taxeditor): mend
display of status in drop down according to preference Katja Luther
03:44 PM Revision be268375 (taxeditor): distributioneditor: display of status in combo box concerning pref...
Katja Luther
03:39 PM bug #7953: Book in BookSeries: incomplete titleCache misses series title
I can only repeat what I wrote in #note-6 . Current understanding of PrintSeries is not that it is part of the titleC... Andreas Müller
03:17 PM bug #8326 (Resolved): update labels for is blocking name and is isonym
nur fehlt bei blocking name und isonym das „is „ wodurch auch Verwirrung entsteht. Da braucht es wohl ein Updatescrip... Andreas Müller
02:25 PM Revision f45c232d (taxeditor): merge hotfix5.7.3 into develop
Katja Luther
01:35 PM Revision cb42825f (taxeditor): Merge branch 'hotfix/5.7.3'
jenkins
12:40 PM Revision 67c8f20e (cdmlib): ref #8321 implementing page by restriction method to allow for flexib...
Andreas Kohlbecker
11:40 AM bug #8315 (Resolved): Parsing existing references with inReferences changes the inReference
Applied in changeset commit:taxeditor|34965c7d9a020910d8a3e36ed3299fb05936f47b.
nach hotfix/5.7.3 gecherry-picked
Katja Luther
11:36 AM bug #8315 (Feedback): Parsing existing references with inReferences changes the inReference
Hmm, difficult to test, some first tests worked fine. I think we can close it and cherry pick + change version. Andreas Müller
11:38 AM Revision 34965c7d (taxeditor): fix #8315: fix Parser in TaxEditor to avoid inReference change of ...
Katja Luther
11:11 AM feature request #8283 (Feedback): Allow adding media to terms in taxeditor
Katja Luther
11:10 AM feature request #8283: Allow adding media to terms in taxeditor
Andreas Müller wrote:
> Or was this code only from the cherry picking? A bit confusing.
Yes this seems to be the ...
Katja Luther
11:08 AM feature request #8283: Allow adding media to terms in taxeditor
Or was this code only from the cherry picking? A bit confusing. Andreas Müller
11:07 AM feature request #8283: Allow adding media to terms in taxeditor
PP just added some more code. Could you check if this also needs to be cherry picked.
Revert milestone as not sure i...
Andreas Müller
11:03 AM feature request #8283 (Resolved): Allow adding media to terms in taxeditor
Applied in changeset commit:taxeditor|909326e9b74be422e80071325ae93e53102404a5. Patrick Plitzner
10:47 AM feature request #8283: Allow adding media to terms in taxeditor
cherry-picked to hotfix/5.7.3 Katja Luther
10:16 AM feature request #8283: Allow adding media to terms in taxeditor
Andreas Müller wrote:
> The data may got lost the following way.
>
> * Open term
> * add media
> * open referen...
Andreas Müller
10:15 AM feature request #8283: Allow adding media to terms in taxeditor
Katja, can you please cherry pick however. The above problems are minor issues and the media are not used much anyway... Andreas Müller
09:54 AM feature request #8283: Allow adding media to terms in taxeditor
With the current implementation it is not possible to switch between advanced and simple view but sometimes it is ess... Andreas Müller
09:47 AM feature request #8283 (Feedback): Allow adding media to terms in taxeditor
The data may got lost the following way.
* Open term
* add media
* open referencing objects view (-> Details Vie...
Andreas Müller
11:04 AM bug #8316: Endless loop when editing name in source of distribution
this issue is cherry-picked to hotfix5.7.3, therefore change the milestone to 5.7 Katja Luther
10:28 AM bug #8316: Endless loop when editing name in source of distribution
Andreas Müller wrote:
> Please also check if this is related to #8283#note-4
this seems to be an older problem, t...
Katja Luther
10:17 AM bug #8316: Endless loop when editing name in source of distribution
Please also check if this is related to #8283#note-4 Andreas Müller
09:31 AM bug #8316 (Feedback): Endless loop when editing name in source of distribution
The endless loop does now not show up anymore.
But after closing the dialog the supplemental data view does not get ...
Andreas Müller
11:03 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
maybe we should keep the milestone here at this is not yet fully fixed. Andreas Müller
10:47 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
cherry-picked to hotfix/5.7.3 Katja Luther
10:33 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
The above issues are minor. Katja, can you still cherry pick the up-to-now changes as it already improves the situati... Andreas Müller
10:31 AM bug #8260 (Feedback): Details and Supplemental Data View do not save the expansion state of sections
In most cases it seems to work fine. But it does not seem to work for ScientificName and Authorship which always seem... Andreas Müller
10:57 AM bug #8229 (Closed): reload of the bulkeditor does not work correctly
Katja Luther
10:53 AM bug #8229: reload of the bulkeditor does not work correctly
cherry-picked to hotfix/5.7.3 Katja Luther
10:47 AM bug #8229 (Feedback): reload of the bulkeditor does not work correctly
Seems to work. Can you still cherry pick and change the milestone? Andreas Müller
10:48 AM Revision 5920a5e8 (taxeditor): ref #8229: update correct property path for search in name and tax...
Katja Luther
10:46 AM Revision 5bb1eb99 (taxeditor): Fix expansion state preference for details and suppData view
Patrick Plitzner
10:46 AM Revision 909326e9 (taxeditor): fix #8283 Add media section to term details view
Patrick Plitzner
10:45 AM Revision 41baf435 (taxeditor): ref #8260: save expansion state for supplemental data
Katja Luther
10:45 AM Revision 175fef3e (taxeditor): ref #8260: save expansion state for supplemental data
Katja Luther
10:39 AM Revision 60aeda7c (taxeditor): fix name details view local pref saving
Katja Luther
10:14 AM Revision 8e382a25 (cdmlib): add rollback check in ExcelImportBase
Andreas Müller
10:10 AM Revision e741a77e (cdmlib): fix compilation error in BaseListController
Andreas Müller
09:45 AM Revision 942a8769 (taxeditor): ref #8047: show symbol and label in drop down of distribution editor
Katja Luther
09:07 AM Revision d18384a7 (cdmlib): fix test as cdm light creates all tables now
Katja Luther
07:21 AM bug #8252 (Closed): reference ellypsis must not be applied to all reference types
The issue of bibliographic authors being displayed for the nomenclatural reference is also fixed now. Andreas Kohlbecker

06/03/2019

08:04 PM Revision 1fac05b8 (cdmlib-apps): cleanup
Andreas Müller
08:03 PM Revision 4ea92c86 (cdmlib-apps): fix VerbatimTimePeriod compile error in IAPT import
Andreas Müller
05:25 PM Revision 2b4d0842 (cdmlib): generic webservice method for all cdm entitiy list controllers to sea...
Andreas Kohlbecker
04:49 PM Revision 51f12ba4 (cdmlib-apps): ref #2937 fix GermanSL import in a way that it does not throw ex...
Andreas Müller
04:05 PM feature request #8320: Links to reference page as appendend icon instead of having the whole cita...
Discussion ended, will now implement .... Andreas Kohlbecker
04:04 PM feature request #8320: Links to reference page as appendend icon instead of having the whole cita...
posting Norberts answer received by email:
"I agree too,
Norbert"
Andreas Kohlbecker
01:32 PM feature request #8320: Links to reference page as appendend icon instead of having the whole cita...
Wolf-Henning Kusber wrote:
> The icon is fine, we do not need the entire string linked.
I also agree. We should t...
Andreas Müller
03:58 PM feature request #8325 (New): Create CDM Instance with all CDM core terms
According to decisions made in https://wiki.bgbm.org/bdinotes/index.php?title=BDI_237 and https://wiki.bgbm.org/bdino... Andreas Müller
01:55 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
We finally decided to implement it such for E+M, see comments in #3982 Andreas Müller
01:54 PM feature request #3982: Update name in source data when moving a Description to another Taxon
for affected methods see also #3472 Andreas Müller
01:53 PM feature request #3982: Update name in source data when moving a Description to another Taxon
Finally I understood that this was already the case in the BM WebEditor. At the same time we agree that this feature ... Andreas Müller
01:46 PM feature request #8324 (New): Make taxon titleCache in name details view a CdmPreference
The taxon titlecache is usually not needed as it is shown in the section label already and the usecases are very rare... Andreas Müller
01:43 PM feature request #8323 (Feedback): Make nom.status and rank lists a CdmPreference
Currently it is only possible to define available nomenclatural status and rank in the local preferences and there it... Andreas Müller
01:03 PM Revision c6e0f47e (cdmlib): ref #8322: adapt TaxonNodeDtoComparator to compare the names by tagge...
Katja Luther
12:57 PM feature request #8322 (Resolved): add sortindex to cdm light export
For better handling in follow up application it is necessary to calculate the sortindex for the taxon. Katja Luther
11:21 AM feature request #8283: Allow adding media to terms in taxeditor
should we add to HFX? Andreas Müller
11:20 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
Should we add to HFX? Andreas Müller
11:19 AM bug #8229 (Resolved): reload of the bulkeditor does not work correctly
should we add to HFX? Andreas Müller
11:03 AM bug #8315: Parsing existing references with inReferences changes the inReference
Think about including into HFX for 5.7 Andreas Müller
10:59 AM feature request #8264 (Closed): excluded and excluded notes in cdmlight export
Andreas Müller
08:04 AM feature request #8317: Omit ex-author if ex-author=author
This needs to be fixed the vaadin TaxonNamePopupEditor which sets the ex-authors automatically depending on the nomen... Andreas Kohlbecker

05/31/2019

10:56 PM bug #8231 (In Progress): Name relation non
Henning you you hit the nail on the head when you wrote: "Why? ... a link by the name string excluding the authors."
...
Andreas Kohlbecker
10:47 PM bug #8231: Name relation non
Copying the follow up to this ticket from #8321 to here:
----
https://www.phycobank.org/cdm_dataportal/name/3...
Andreas Kohlbecker
10:40 PM bug #8231: Name relation non
Sorry Henning I closed this issue erroneously. The comment !#4 was meant for another ticket. I will edit this comment... Andreas Kohlbecker
09:15 PM bug #8231: Name relation non
new issue for discussion of the described site effects #8321 Wolf-Henning Kusber
05:58 PM bug #8231 (Closed): Name relation non
~~I created a tickt (#8320) to discuss the linking of references.~~
~~Closing this issue as there is nothing else ...
Andreas Kohlbecker
10:31 PM task #5857: show nomenclatural status for for representations of TaxonName
I don't quite understand the problem.
Navicula adminensis is validating Navicula adminii and this validation is d...
Andreas Kohlbecker
06:13 PM task #5857: show nomenclatural status for for representations of TaxonName
#15
is changed, but not in a proper way.
The articles are linked to the validating name. The articles refer to the ...
Wolf-Henning Kusber
06:04 PM task #5857: show nomenclatural status for for representations of TaxonName
sorry I missed, comment 15, will respond again later Andreas Kohlbecker
06:01 PM task #5857: show nomenclatural status for for representations of TaxonName
so can we close this issue or are you still testing? Andreas Kohlbecker
01:54 PM task #5857: show nomenclatural status for for representations of TaxonName
The following output is fine:
![](picture890-1.png)
Wolf-Henning Kusber
01:52 PM task #5857: show nomenclatural status for for representations of TaxonName
The following output is perfect:
![](picture292-1.png)
Wolf-Henning Kusber
01:43 PM task #5857 (Feedback): show nomenclatural status for for representations of TaxonName
Review: The articles are shown, but for users the content migth be confusing.
How to read this?
Navicula adminii ...
Wolf-Henning Kusber
12:35 PM task #5857: show nomenclatural status for for representations of TaxonName
this has been solved completely, please review Andreas Kohlbecker
10:42 AM task #5857 (Resolved): show nomenclatural status for for representations of TaxonName
Applied in changeset commit:cdm-dataportal|a7560a186de2e5673e04f4a1166ad1077eb7c7d5. Andreas Kohlbecker
09:13 PM bug #8321 (Closed): Namepage shows wrong taxa as related to the name
Follow up to ticket bug #8231
https://www.phycobank.org/cdm_dataportal/name/39908030-32e3-400c-b6c0-91aeda1e810a...
Wolf-Henning Kusber
06:15 PM feature request #8320: Links to reference page as appendend icon instead of having the whole cita...
The icon is fine, we do not need the entire string linked. Wolf-Henning Kusber
05:57 PM feature request #8320: Links to reference page as appendend icon instead of having the whole cita...
The most important questions to answer are:
1. Is a appended icon prominent enough, so that users don't oversee th...
Andreas Kohlbecker
05:54 PM feature request #8320 (Closed): Links to reference page as appendend icon instead of having the w...
Currently the portal creates links to references by turning the whole reference string into a link. Since citation st... Andreas Kohlbecker
05:58 PM feature request #7975 (Closed): Implement a block to display name relations
I created a ticket (#8320) to discuss the linking of references.
Closing this issue as there is nothing else to do...
Andreas Kohlbecker
02:13 PM feature request #7975 (Feedback): Implement a block to display name relations
Review: the bibliographic authors are used. This part is resolved, fine.
"Turland, N.J., Wiersema, J.H., Barrie, F...
Wolf-Henning Kusber
12:34 PM feature request #7975: Implement a block to display name relations
now the bibliographic authors are being used, please review again.
The missing separating character between Title ...
Andreas Kohlbecker
02:07 PM Revision 553606dc (cdm-dataportal): removing service mock which has been applied for hotfix 5.7.3
Andreas Kohlbecker
02:06 PM Revision d3d551d8 (cdm-dataportal): Merge tag '5.7.3' into develop
tagging hotfix 5.7.3 Andreas Kohlbecker
02:06 PM Revision 4482562b (cdm-dataportal): Merge branch 'hotfix/5.7.3'
Andreas Kohlbecker
02:06 PM Revision 6066fc75 (cdm-dataportal): mocking missing name/typeDesignationStatusFilterTerms for phy...
Andreas Kohlbecker
01:20 PM Revision 917d9aaf (cdm-dataportal): Merge tag '5.7.2' into develop
tagging hotfix 5.7.2 Andreas Kohlbecker
01:20 PM Revision 4b11a2b0 (cdm-dataportal): Merge branch 'hotfix/5.7.2'
Andreas Kohlbecker
01:19 PM Revision f3d52fe7 (cdm-dataportal): Merge branch 'develop' into hotfix/5.7.2
Andreas Kohlbecker
12:36 PM feature request #8318 (Closed): TaxonName processing for taggedFullTitle
done! Andreas Kohlbecker
12:36 PM feature request #8314 (Closed): TaxonName provides the FullTitleCache as TaggedText
completed Andreas Kohlbecker
09:24 AM feature request #8314 (Resolved): TaxonName provides the FullTitleCache as TaggedText
Applied in changeset commit:cdmlib|f537247b88e6017e313ac332745cfc3df27b5f88. Andreas Kohlbecker
10:41 AM Revision 222784c5 (cdm-dataportal): ref #5857 showing show citation, rule considered, and citatio...
Andreas Kohlbecker
09:24 AM feature request #8319 (Closed): NomenclaturalStatus webservice implemented
Andreas Kohlbecker
09:24 AM feature request #8319 (Resolved): NomenclaturalStatus webservice implemented
Applied in changeset commit:cdmlib|49fdbd9a198c03df49cf0df3a41927d82a16715b. Andreas Kohlbecker
09:14 AM feature request #8319 (Closed): NomenclaturalStatus webservice implemented
for #5857 it is required to be able to get NomenclaturalStatus objects from vi the web service. This is especially th... Andreas Kohlbecker
09:24 AM Revision 49fdbd9a (cdmlib): fix #8319 NomenclaturalStatus webservice and according service method...
Andreas Kohlbecker
09:24 AM Revision 16211a64 (cdmlib): ref #5857, ref #8319 adding TypedEntityRefernces to nom status Tagged...
Andreas Kohlbecker
09:24 AM Revision f537247b (cdmlib): fix #8314 implementing taxonname.taggedFullTitle for model class and ...
Andreas Kohlbecker

05/29/2019

09:04 PM Revision f8d5d6d9 (cdm-dataportal): ref #7975 relationship footnotes moved to relationship sign/l...
Andreas Kohlbecker
07:54 PM Revision a7560a18 (cdm-dataportal): fix #5857 implementing display of nomenclatural status data i...
Andreas Kohlbecker
07:45 PM Revision de7bcbcc (cdm-dataportal): ref #8318 processing of taxonname.taggedFullTitle for name re...
Andreas Kohlbecker
07:44 PM feature request #8318 (In Progress): TaxonName processing for taggedFullTitle
Andreas Kohlbecker
07:37 PM feature request #8318 (Closed): TaxonName processing for taggedFullTitle
The TaxonName.taggedFullTitle needs different processing than the Taxon.taggedTitle Andreas Kohlbecker
05:42 PM feature request #8317 (Closed): Omit ex-author if ex-author=author
If and only if ex author = author the ex author is not included into the author teams due to the ICN 46.10.
This is ...
Wolf-Henning Kusber
02:36 PM task #5857: show nomenclatural status for for representations of TaxonName
no need to discuss this with the users. The display of the nom status can be configured via the "Name render templates" Andreas Kohlbecker
01:59 PM Revision 5a4e6f50 (cdm-dataportal): fixing titlecache usage for name rel footnotes - adapting tests
Andreas Kohlbecker
01:58 PM Revision 6d0b5bc3 (cdm-dataportal): ref #8304 adapting test cases
Andreas Kohlbecker
01:52 PM Revision b648739e (cdm-dataportal): ref #8304 fixing problems with page arg evaluation
Andreas Kohlbecker
01:24 PM Revision 4765e3e9 (taxeditor): fix #8316: fix endless loop when editing name in source
Katja Luther
01:16 PM Revision 9393e4d3 (taxeditor): Updated version in pom / project files to taxeditor version : 5.7....
jenkins
01:04 PM Revision 50737bf6 (cdmlib): ref #8273: check for DNA data for provided biocase provider
Katja Luther
01:00 PM Revision 1195e0cc (cdmlib): minor
Katja Luther
12:59 PM Revision 442916a4 (cdmlib): ref #8182: adapt occurrence DTOs to use them in details page of blast...
Katja Luther
12:52 PM Revision bfaa6a16 (cdmlib): ref #8045: add toString() to the preference enums
Katja Luther
12:41 PM bug #8316: Endless loop when editing name in source of distribution
please review Katja Luther
12:30 PM bug #8316 (Resolved): Endless loop when editing name in source of distribution
Applied in changeset commit:taxeditor|9b4eaf57527243baf4b517d19f90b3c6a4f3d18c. Katja Luther
12:28 PM bug #8316 (Feedback): Endless loop when editing name in source of distribution
mail AM:
also bei nameUsedInSource bekomme ich das weiterhin regelmäßig, spätestens beim 2. oder 3. Mal. Kannst du...
Katja Luther
12:40 PM Revision 0f9976d6 (cdm-dataportal): waiting for page to load
Andreas Kohlbecker
12:29 PM Revision 9b4eaf57 (taxeditor): fix #8316: fix endless loop when editing name in source
Katja Luther
11:51 AM Revision d3276246 (cdmlib): ref #8248 Add term vocbulary import test + code cleanup
Patrick Plitzner
11:02 AM bug #8315: Parsing existing references with inReferences changes the inReference
please review Katja Luther
10:19 AM bug #8315: Parsing existing references with inReferences changes the inReference
Should I review? Andreas Müller
09:19 AM bug #8315 (Resolved): Parsing existing references with inReferences changes the inReference
Applied in changeset commit:taxeditor|c9d22df2150151a1181ff5c8b8167e1ff5896a73. Katja Luther
09:18 AM bug #8315: Parsing existing references with inReferences changes the inReference
This problem appears because the parser checks whether the inreference already exists in DB and when one or more refe... Katja Luther
09:13 AM bug #8315 (Closed): Parsing existing references with inReferences changes the inReference
mail Mareike Liese:
Hallo,
leider kann ich in der Datenbank nichts speichern.
Ich hab über die Art auf Enter g...
Katja Luther
10:37 AM Revision f8ea1d2f (cdmlib): ref #8248 Fix property string access
Patrick Plitzner
10:37 AM bug #6523 (Feedback): Correct display of misspellings in synonymy
ich nehme mal Henning hier mit 'rein und übergebe ihm das Ticket.
@Henning: Kannst du dir bitte die beiden Fragen...
Andreas Kohlbecker
09:41 AM Revision 0a5c2ac4 (cdmlib): ref #6774 Init export configurator
Patrick Plitzner
09:19 AM Revision c9d22df2 (taxeditor): fix #8315: fix Parser in TaxEditor to avoid inReference change of ...
Katja Luther
08:17 AM Revision d7bdaf08 (taxeditor): ref #6774 Fix term treee export via context menu
Patrick Plitzner
 

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