Activity
From 05/09/2019 to 06/07/2019
06/07/2019
- 05:58 PM feature request #8016 (Closed): Registration page: subheadline with event type
- 05:16 PM feature request #8016: Registration page: subheadline with event type
- Ja, jetzt sieht es gut aus!
- 05:06 PM feature request #8016: Registration page: subheadline with event type
- Problem gelöst: http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration/http%253A%252F%252...
- 09:40 AM feature request #8016: Registration page: subheadline with event type
- Wording is fine :)
Remaining issue: subheadline is not between identifier and name, but displaced within a nomencl... - 08:56 AM feature request #8016: Registration page: subheadline with event type
- All suggestions and improvements are applied.
- 04:59 PM Revision 5a4a32da (cdm-dataportal): ref #8016 registration event type representation: fixing position (weight)
- 04:24 PM feature request #7975: Implement a block to display name relations
- In the developer standup today we almost already decided for adding an enumeration field to `NameRelationship` and to...
- 09:17 AM feature request #7975: Implement a block to display name relations
- Thanks, Andreas K.
@ Andreas M.: please keep in mind that some rules and/or article numbers of the ICN may change. I... - 09:05 AM feature request #7975 (Feedback): Implement a block to display name relations
- I think that adding a second reference to the `NameRelationship` and to `NomenclaturalStatus` would not hurt but woul...
- 08:55 AM Revision 0a02c62f (cdm-dataportal): ref #8016 registration event type representation: detail changes
06/06/2019
- 07:03 PM feature request #7975: Implement a block to display name relations
- "the reference of a nom. status or name relationship is meant to say who says that this status/relationship exists. I...
- 02:13 PM feature request #7975: Implement a block to display name relations
- As discussed the reference of a nom. status or name relationship is meant to say who says that this status/relationsh...
- 06:42 PM feature request #8016: Registration page: subheadline with event type
- Review:
Example http://phycobank.org/100005
Event: New name & new taxon & new nomeclatural type
Issue 1: nomecla... - 03:11 PM feature request #8016: Registration page: subheadline with event type
- ready for review
- 03:10 PM feature request #8016 (Resolved): Registration page: subheadline with event type
- Applied in changeset commit:cdm-dataportal|b90ef61802d5882f5cf1b0b5a1c6cee8c32e3f61.
- 06:00 PM bug #8287 (In Progress): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
- 05:58 PM feature request #8330 (Closed): RegistrationDao search method
- Due to the problems reported in #8287 a dedicated dao search method is needed. This method first of all needs to sup...
- 03:10 PM Revision b90ef618 (cdm-dataportal): fix #8016 implementing display of registration event type
- 02:34 PM bug #8329: Multiple representations exception when adding name relationship with already existing author
- If adding another name (without author Mill.) via relationship the problem does not appear while using Abies alba Mil...
- 02:29 PM bug #8329 (Worksforme): Multiple representations exception when adding name relationship with already existing author
- In E+M test I tried to add a name relationship to Pinus picea (synonym for Abies alba) via Name editor.
I added na... - 01:57 PM Revision 72d57201 (cdm-dataportal): ref #8182: specimen tree is collapsable, blast result table with clickable details
06/05/2019
- 03:03 PM feature request #7438 (Closed): implement citation suggestion in dataportal
- Works as expected. Open new ticket if details need to be changed
- 02:31 PM task #8118: Update MySQL drivers
- https://dev.mysql.com/doc/refman/8.0/en/time-zone-support.html
- 02:04 PM bug #8315: Parsing existing references with inReferences changes the inReference
- moved accidentaly back to 5.8
- 02:04 PM bug #8315 (Closed): Parsing existing references with inReferences changes the inReference
- 01:54 PM bug #8189: Allow configuration of 'user.home' via the spring environment
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > now that the changes made for this ticket are no longer causi... - 01:31 PM bug #8189: Allow configuration of 'user.home' via the spring environment
- Andreas Kohlbecker wrote:
> now that the changes made for this ticket are no longer causing any problems I will do t... - 12:25 PM bug #8189: Allow configuration of 'user.home' via the spring environment
- Therefore I do not agree to remove the method or to remove the MUST_EXIST_FILE (but we may remove if there is a bette...
- 12:23 PM bug #8189: Allow configuration of 'user.home' via the spring environment
- Andreas Kohlbecker wrote:
> The Method `CdmUtils.getFolderSeperator()` is completely redundant since `File.separator... - 12:14 PM bug #8189: Allow configuration of 'user.home' via the spring environment
- Andreas Kohlbecker wrote:
> > The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows sy... - 01:42 PM Revision 182b1e60 (taxeditor): ref #8293: distribution details view uses the same status pref as distr. editor
- 01:19 PM feature request #8257 (Feedback): Remove factory methods for term node creation
- should be fixed now and can be closed I guess
- 01:17 PM feature request #8257 (Resolved): Remove factory methods for term node creation
- Applied in changeset commit:cdmlib|179a846773ab7eec76e786dfafe5a84cdbdf7103.
- 01:17 PM Revision 179a8467 (cdmlib): fix #8257 remove remaining deprecated FeatureNode.NewInstance method
- 11:04 AM task #5856 (New): [DISCUSS] Consider implemeting additional name relationships
- Needs to be discussed. No action needed before.
- 10:48 AM feature request #8293: Distribution preferences for details view should be serverside preferences
- But in a way you are right and the details view when used via distribution editor and the distribution editor itself ...
- 10:45 AM feature request #8293: Distribution preferences for details view should be serverside preferences
- I didn't say we want 2, but we want it serverside, currently this is not yet the case. It should be 1 predicate I gue...
- 09:53 AM feature request #8293 (Feedback): Distribution preferences for details view should be serverside preferences
- do we really want to have two different preferences? one for the distribution editor,one for the details view?
- 09:34 AM Revision 8e653279 (cdmlib): overwrite equals for taxonnodeDto
06/04/2019
- 10:22 PM Revision 9f2fa4a8 (cdmlib): ref #8047: configurable display of status in drop down, new enum and predicate
- 05:56 PM bug #8231 (Feedback): Name relation non
- the above problem has now been solved in #8321. I think we can also close this issue here, or did I miss something?
- 05:54 PM bug #8321: Namepage shows wrong taxa as related to the name
- please review
- 05:53 PM bug #8321 (Resolved): Namepage shows wrong taxa as related to the name
- Applied in changeset commit:cdm-dataportal|fb308159d88b11b398e104e0e38231407049a7fe.
- 05:52 PM Revision fb308159 (cdm-dataportal): fix #8321 finding taxa for a given name by matching whith the whole titleCache
- 05:48 PM Revision 11847891 (taxeditor): ref #8047: configurable display of status in drop down
- 05:46 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
- I cleaned the ticket up as requested
- 12:46 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
- Be aware that this ticket has already status resolved in 5.1. It's task description should not be enlarged anymore if...
- 12:44 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
- Also this ticket is only about **E+M** data portal relevant webservices. For other webservices please use #7492.
- 12:40 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
- Can you please adapt the new information on *doPageByRestrictions* to the logic of the rest of the list? In general w...
- 05:41 PM discussion #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
- Sorry for misusing this ticket
- 03:29 PM discussion #6678 (In Progress): [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
- 03:29 PM discussion #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
- Andreas Kohlbecker wrote:
> please answer to the questions in comment 3
This is a DISCUSS ticket not an implement... - 05:39 PM bug #8328 (Closed): Unpublished record visible in Portal if related name is published
- Unpublished record visible in Portal if related name is published.
 - 05:26 PM task #5857 (In Progress): show nomenclatural status for for representations of TaxonName
- we (Andreas & Henning) decided to move the footnote in front of the relationship label depending on direction of the ...
- 05:24 PM bug #8327 (Duplicate): record with publication date is competing with curation status, set to preparation or curation
- Example from the Test system:
Basionym: Fragilaria santaremensis = published (Vaadin UI set to published)
New com... - 03:54 PM Revision 1faab189 (taxeditor): Revert "mend"
- This reverts commit 80379c19934c880a3631e83ffec07ef9215b2378.
- 03:46 PM Revision 80379c19 (taxeditor): mend
- display of status in drop down according to preference
- 03:44 PM Revision be268375 (taxeditor): distributioneditor: display of status in combo box concerning preference
- 03:39 PM bug #7953: Book in BookSeries: incomplete titleCache misses series title
- I can only repeat what I wrote in #note-6 . Current understanding of PrintSeries is not that it is part of the titleC...
- 03:17 PM bug #8326 (Closed): update labels for is blocking name and is isonym
- nur fehlt bei blocking name und isonym das „is „ wodurch auch Verwirrung entsteht. Da braucht es wohl ein Updatescrip...
- 02:25 PM Revision f45c232d (taxeditor): merge hotfix5.7.3 into develop
- 01:35 PM Revision cb42825f (taxeditor): Merge branch 'hotfix/5.7.3'
- 12:40 PM Revision 67c8f20e (cdmlib): ref #8321 implementing page by restriction method to allow for flexible web service queries, also protecting unpublished taxa and names ref #3560
- 11:40 AM bug #8315 (Resolved): Parsing existing references with inReferences changes the inReference
- Applied in changeset commit:taxeditor|34965c7d9a020910d8a3e36ed3299fb05936f47b.
nach hotfix/5.7.3 gecherry-picked - 11:36 AM bug #8315 (Feedback): Parsing existing references with inReferences changes the inReference
- Hmm, difficult to test, some first tests worked fine. I think we can close it and cherry pick + change version.
- 11:38 AM Revision 34965c7d (taxeditor): fix #8315: fix Parser in TaxEditor to avoid inReference change of existing references
- 11:11 AM feature request #8283 (Feedback): Allow adding media to terms in taxeditor
- 11:10 AM feature request #8283: Allow adding media to terms in taxeditor
- Andreas Müller wrote:
> Or was this code only from the cherry picking? A bit confusing.
Yes this seems to be the ... - 11:08 AM feature request #8283: Allow adding media to terms in taxeditor
- Or was this code only from the cherry picking? A bit confusing.
- 11:07 AM feature request #8283: Allow adding media to terms in taxeditor
- PP just added some more code. Could you check if this also needs to be cherry picked.
Revert milestone as not sure i... - 11:03 AM feature request #8283 (Resolved): Allow adding media to terms in taxeditor
- Applied in changeset commit:taxeditor|909326e9b74be422e80071325ae93e53102404a5.
- 10:47 AM feature request #8283: Allow adding media to terms in taxeditor
- cherry-picked to hotfix/5.7.3
- 10:16 AM feature request #8283: Allow adding media to terms in taxeditor
- Andreas Müller wrote:
> The data may got lost the following way.
>
> * Open term
> * add media
> * open referen... - 10:15 AM feature request #8283: Allow adding media to terms in taxeditor
- Katja, can you please cherry pick however. The above problems are minor issues and the media are not used much anyway...
- 09:54 AM feature request #8283: Allow adding media to terms in taxeditor
- With the current implementation it is not possible to switch between advanced and simple view but sometimes it is ess...
- 09:47 AM feature request #8283 (Feedback): Allow adding media to terms in taxeditor
- The data may got lost the following way.
* Open term
* add media
* open referencing objects view (-> Details Vie... - 11:04 AM bug #8316: Endless loop when editing name in source of distribution
- this issue is cherry-picked to hotfix5.7.3, therefore change the milestone to 5.7
- 10:28 AM bug #8316: Endless loop when editing name in source of distribution
- Andreas Müller wrote:
> Please also check if this is related to #8283#note-4
this seems to be an older problem, t... - 10:17 AM bug #8316: Endless loop when editing name in source of distribution
- Please also check if this is related to #8283#note-4
- 09:31 AM bug #8316 (Feedback): Endless loop when editing name in source of distribution
- The endless loop does now not show up anymore.
But after closing the dialog the supplemental data view does not get ... - 11:03 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
- maybe we should keep the milestone here at this is not yet fully fixed.
- 10:47 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
- cherry-picked to hotfix/5.7.3
- 10:33 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
- The above issues are minor. Katja, can you still cherry pick the up-to-now changes as it already improves the situati...
- 10:31 AM bug #8260 (Feedback): Details and Supplemental Data View do not save the expansion state of sections
- In most cases it seems to work fine. But it does not seem to work for ScientificName and Authorship which always seem...
- 10:57 AM bug #8229 (Closed): reload of the bulkeditor does not work correctly
- 10:53 AM bug #8229: reload of the bulkeditor does not work correctly
- cherry-picked to hotfix/5.7.3
- 10:47 AM bug #8229 (Feedback): reload of the bulkeditor does not work correctly
- Seems to work. Can you still cherry pick and change the milestone?
- 10:48 AM Revision 5920a5e8 (taxeditor): ref #8229: update correct property path for search in name and taxon bulkeditor
- 10:46 AM Revision 5bb1eb99 (taxeditor): Fix expansion state preference for details and suppData view
- 10:46 AM Revision 909326e9 (taxeditor): fix #8283 Add media section to term details view
- 10:45 AM Revision 41baf435 (taxeditor): ref #8260: save expansion state for supplemental data
- 10:45 AM Revision 175fef3e (taxeditor): ref #8260: save expansion state for supplemental data
- 10:39 AM Revision 60aeda7c (taxeditor): fix name details view local pref saving
- 10:14 AM Revision 8e382a25 (cdmlib): add rollback check in ExcelImportBase
- 10:10 AM Revision e741a77e (cdmlib): fix compilation error in BaseListController
- 09:45 AM Revision 942a8769 (taxeditor): ref #8047: show symbol and label in drop down of distribution editor
- 09:07 AM Revision d18384a7 (cdmlib): fix test as cdm light creates all tables now
- 07:21 AM bug #8252 (Closed): reference ellypsis must not be applied to all reference types
- The issue of bibliographic authors being displayed for the nomenclatural reference is also fixed now.
06/03/2019
- 08:04 PM Revision 1fac05b8 (cdmlib-apps): cleanup
- 08:03 PM Revision 4ea92c86 (cdmlib-apps): fix VerbatimTimePeriod compile error in IAPT import
- 05:25 PM Revision 2b4d0842 (cdmlib): generic webservice method for all cdm entitiy list controllers to search by Restriction
- 04:49 PM Revision 51f12ba4 (cdmlib-apps): ref #2937 fix GermanSL import in a way that it does not throw exceptions
- 04:05 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- Discussion ended, will now implement ....
- 04:04 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- posting Norberts answer received by email:
"I agree too,
Norbert" - 01:32 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- Wolf-Henning Kusber wrote:
> The icon is fine, we do not need the entire string linked.
I also agree. We should t... - 03:58 PM feature request #8325 (In Progress): Create CDM Instance with all CDM core terms
- According to decisions made in https://wiki.bgbm.org/bdinotes/index.php?title=BDI_237 and https://wiki.bgbm.org/bdino...
- 01:55 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- We finally decided to implement it such for E+M, see comments in #3982
- 01:54 PM feature request #3982: Update name in source data when moving a Description to another Taxon
- for affected methods see also #3472
- 01:53 PM feature request #3982: Update name in source data when moving a Description to another Taxon
- Finally I understood that this was already the case in the BM WebEditor. At the same time we agree that this feature ...
- 01:46 PM feature request #8324 (New): Make taxon titleCache in name details view a CdmPreference
- The taxon titlecache is usually not needed as it is shown in the section label already and the usecases are very rare...
- 01:43 PM feature request #8323 (Feedback): Make nom.status and rank lists a CdmPreference
- Currently it is only possible to define available nomenclatural status and rank in the local preferences and there it...
- 01:03 PM Revision c6e0f47e (cdmlib): ref #8322: adapt TaxonNodeDtoComparator to compare the names by taggedTitle
- 12:57 PM feature request #8322 (Resolved): add sortindex to cdm light export
- For better handling in follow up application it is necessary to calculate the sortindex for the taxon.
- 11:21 AM feature request #8283: Allow adding media to terms in taxeditor
- should we add to HFX?
- 11:20 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
- Should we add to HFX?
- 11:19 AM bug #8229 (Resolved): reload of the bulkeditor does not work correctly
- should we add to HFX?
- 11:03 AM bug #8315: Parsing existing references with inReferences changes the inReference
- Think about including into HFX for 5.7
- 10:59 AM feature request #8264 (Closed): excluded and excluded notes in cdmlight export
- 08:04 AM feature request #8317: Omit ex-author if ex-author=author
- This needs to be fixed the vaadin TaxonNamePopupEditor which sets the ex-authors automatically depending on the nomen...
05/31/2019
- 10:56 PM bug #8231 (In Progress): Name relation non
- Henning you you hit the nail on the head when you wrote: "Why? ... a link by the name string excluding the authors."
... - 10:47 PM bug #8231: Name relation non
- Copying the follow up to this ticket from #8321 to here:
----
https://www.phycobank.org/cdm_dataportal/name/3... - 10:40 PM bug #8231: Name relation non
- Sorry Henning I closed this issue erroneously. The comment !#4 was meant for another ticket. I will edit this comment...
- 09:15 PM bug #8231: Name relation non
- new issue for discussion of the described site effects #8321
- 05:58 PM bug #8231 (Closed): Name relation non
- ~~I created a tickt (#8320) to discuss the linking of references.~~
~~Closing this issue as there is nothing else ... - 10:31 PM task #5857: show nomenclatural status for for representations of TaxonName
- I don't quite understand the problem.
Navicula adminensis is validating Navicula adminii and this validation is d... - 06:13 PM task #5857: show nomenclatural status for for representations of TaxonName
- #15
is changed, but not in a proper way.
The articles are linked to the validating name. The articles refer to the ... - 06:04 PM task #5857: show nomenclatural status for for representations of TaxonName
- sorry I missed, comment 15, will respond again later
- 06:01 PM task #5857: show nomenclatural status for for representations of TaxonName
- so can we close this issue or are you still testing?
- 01:54 PM task #5857: show nomenclatural status for for representations of TaxonName
- The following output is fine:
 - 01:52 PM task #5857: show nomenclatural status for for representations of TaxonName
- The following output is perfect:
 - 01:43 PM task #5857 (Feedback): show nomenclatural status for for representations of TaxonName
- Review: The articles are shown, but for users the content migth be confusing.
How to read this?
Navicula adminii ... - 12:35 PM task #5857: show nomenclatural status for for representations of TaxonName
- this has been solved completely, please review
- 10:42 AM task #5857 (Resolved): show nomenclatural status for for representations of TaxonName
- Applied in changeset commit:cdm-dataportal|a7560a186de2e5673e04f4a1166ad1077eb7c7d5.
- 09:13 PM bug #8321 (Closed): Namepage shows wrong taxa as related to the name
- Follow up to ticket bug #8231
https://www.phycobank.org/cdm_dataportal/name/39908030-32e3-400c-b6c0-91aeda1e810a... - 06:15 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- The icon is fine, we do not need the entire string linked.
- 05:57 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- The most important questions to answer are:
1. Is a appended icon prominent enough, so that users don't oversee th... - 05:54 PM feature request #8320 (Closed): Links to reference page as appendend icon instead of having the whole citation as link
- Currently the portal creates links to references by turning the whole reference string into a link. Since citation st...
- 05:58 PM feature request #7975 (Closed): Implement a block to display name relations
- I created a ticket (#8320) to discuss the linking of references.
Closing this issue as there is nothing else to do... - 02:13 PM feature request #7975 (Feedback): Implement a block to display name relations
- Review: the bibliographic authors are used. This part is resolved, fine.
"Turland, N.J., Wiersema, J.H., Barrie, F... - 12:34 PM feature request #7975: Implement a block to display name relations
- now the bibliographic authors are being used, please review again.
The missing separating character between Title ... - 02:07 PM Revision 553606dc (cdm-dataportal): removing service mock which has been applied for hotfix 5.7.3
- 02:06 PM Revision d3d551d8 (cdm-dataportal): Merge tag '5.7.3' into develop
- tagging hotfix 5.7.3
- 02:06 PM Revision 4482562b (cdm-dataportal): Merge branch 'hotfix/5.7.3'
- 02:06 PM Revision 6066fc75 (cdm-dataportal): mocking missing name/typeDesignationStatusFilterTerms for phycobank
- 01:20 PM Revision 917d9aaf (cdm-dataportal): Merge tag '5.7.2' into develop
- tagging hotfix 5.7.2
- 01:20 PM Revision 4b11a2b0 (cdm-dataportal): Merge branch 'hotfix/5.7.2'
- 01:19 PM Revision f3d52fe7 (cdm-dataportal): Merge branch 'develop' into hotfix/5.7.2
- 12:36 PM feature request #8318 (Closed): TaxonName processing for taggedFullTitle
- done!
- 12:36 PM feature request #8314 (Closed): TaxonName provides the FullTitleCache as TaggedText
- completed
- 09:24 AM feature request #8314 (Resolved): TaxonName provides the FullTitleCache as TaggedText
- Applied in changeset commit:cdmlib|f537247b88e6017e313ac332745cfc3df27b5f88.
- 10:41 AM Revision 222784c5 (cdm-dataportal): ref #5857 showing show citation, rule considered, and citation of nomenclatural status in footnotes, adapting tests
- 09:24 AM feature request #8319 (Closed): NomenclaturalStatus webservice implemented
- 09:24 AM feature request #8319 (Resolved): NomenclaturalStatus webservice implemented
- Applied in changeset commit:cdmlib|49fdbd9a198c03df49cf0df3a41927d82a16715b.
- 09:14 AM feature request #8319 (Closed): NomenclaturalStatus webservice implemented
- for #5857 it is required to be able to get NomenclaturalStatus objects from vi the web service. This is especially th...
- 09:24 AM Revision 16211a64 (cdmlib): ref #5857, ref #8319 adding TypedEntityRefernces to nom status TaggedText and fixing json serialization for EntitiyReferences in taxon.taggedTitle processing
- 09:24 AM Revision 49fdbd9a (cdmlib): fix #8319 NomenclaturalStatus webservice and according service methods implemented
- 09:24 AM Revision f537247b (cdmlib): fix #8314 implementing taxonname.taggedFullTitle for model class and in web service controller
05/29/2019
- 09:04 PM Revision f8d5d6d9 (cdm-dataportal): ref #7975 relationship footnotes moved to relationship sign/label
- 07:54 PM Revision a7560a18 (cdm-dataportal): fix #5857 implementing display of nomenclatural status data in name page, registration page
- 07:45 PM Revision de7bcbcc (cdm-dataportal): ref #8318 processing of taxonname.taggedFullTitle for name rendering
- 07:44 PM feature request #8318 (In Progress): TaxonName processing for taggedFullTitle
- 07:37 PM feature request #8318 (Closed): TaxonName processing for taggedFullTitle
- The TaxonName.taggedFullTitle needs different processing than the Taxon.taggedTitle
- 05:42 PM feature request #8317 (Closed): Omit ex-author if ex-author=author
- If and only if ex author = author the ex author is not included into the author teams due to the ICN 46.10.
This is ... - 02:36 PM task #5857: show nomenclatural status for for representations of TaxonName
- no need to discuss this with the users. The display of the nom status can be configured via the "Name render templates"
- 01:59 PM Revision 5a4e6f50 (cdm-dataportal): fixing titlecache usage for name rel footnotes - adapting tests
- 01:58 PM Revision 6d0b5bc3 (cdm-dataportal): ref #8304 adapting test cases
- 01:52 PM Revision b648739e (cdm-dataportal): ref #8304 fixing problems with page arg evaluation
- 01:24 PM Revision 4765e3e9 (taxeditor): fix #8316: fix endless loop when editing name in source
- 01:16 PM Revision 9393e4d3 (taxeditor): Updated version in pom / project files to taxeditor version : 5.7.3 and cdmlib version : 5.7.0
- 01:04 PM Revision 50737bf6 (cdmlib): ref #8273: check for DNA data for provided biocase provider
- 01:00 PM Revision 1195e0cc (cdmlib): minor
- 12:59 PM Revision 442916a4 (cdmlib): ref #8182: adapt occurrence DTOs to use them in details page of blast result
- 12:52 PM Revision bfaa6a16 (cdmlib): ref #8045: add toString() to the preference enums
- 12:41 PM bug #8316: Endless loop when editing name in source of distribution
- please review
- 12:30 PM bug #8316 (Resolved): Endless loop when editing name in source of distribution
- Applied in changeset commit:taxeditor|9b4eaf57527243baf4b517d19f90b3c6a4f3d18c.
- 12:28 PM bug #8316 (Closed): Endless loop when editing name in source of distribution
- mail AM:
also bei nameUsedInSource bekomme ich das weiterhin regelmäßig, spätestens beim 2. oder 3. Mal. Kannst du... - 12:40 PM Revision 0f9976d6 (cdm-dataportal): waiting for page to load
- 12:29 PM Revision 9b4eaf57 (taxeditor): fix #8316: fix endless loop when editing name in source
- 11:51 AM Revision d3276246 (cdmlib): ref #8248 Add term vocbulary import test + code cleanup
- 11:02 AM bug #8315: Parsing existing references with inReferences changes the inReference
- please review
- 10:19 AM bug #8315: Parsing existing references with inReferences changes the inReference
- Should I review?
- 09:19 AM bug #8315 (Resolved): Parsing existing references with inReferences changes the inReference
- Applied in changeset commit:taxeditor|c9d22df2150151a1181ff5c8b8167e1ff5896a73.
- 09:18 AM bug #8315: Parsing existing references with inReferences changes the inReference
- This problem appears because the parser checks whether the inreference already exists in DB and when one or more refe...
- 09:13 AM bug #8315 (Closed): Parsing existing references with inReferences changes the inReference
- mail Mareike Liese:
Hallo,
leider kann ich in der Datenbank nichts speichern.
Ich hab über die Art auf Enter g... - 10:37 AM Revision f8ea1d2f (cdmlib): ref #8248 Fix property string access
- 10:37 AM bug #6523 (Feedback): Correct display of misspellings in synonymy
- ich nehme mal Henning hier mit 'rein und übergebe ihm das Ticket.
@Henning: Kannst du dir bitte die beiden Fragen... - 09:41 AM Revision 0a5c2ac4 (cdmlib): ref #6774 Init export configurator
- 09:19 AM Revision c9d22df2 (taxeditor): fix #8315: fix Parser in TaxEditor to avoid inReference change of existing references
- 08:17 AM Revision d7bdaf08 (taxeditor): ref #6774 Fix term treee export via context menu
05/28/2019
- 10:15 PM bug #6523: Correct display of misspellings in synonymy
- Andreas Kohlbecker wrote:
> sollen misspellings überhaupt in der form "non ... nec ..." dargestellt werden?
würde... - 05:51 PM Revision e80ee826 (cdmlib): ref #8248 Adapt test to import
- 05:50 PM Revision d48d26c0 (cdmlib): ref #8248 Set UUID during import
- 05:31 PM feature request #8314 (Closed): TaxonName provides the FullTitleCache as TaggedText
- In order to display the nomenclatural status in the DataPortal name page, etc it is required to obtain the tagged ful...
- 03:02 PM Revision 0e6c3b12 (cdmlib): ref #6774 Adapt test to export format
- 02:58 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
- If a cell has mutliple categorical data values and you click on it, the data is completely deleted. This does not hap...
- 02:44 PM feature request #7714 (Rejected): PhycoBank UI Restrictions for reference types
- this is avoided to some extend, but we will not enforce this further
- 02:41 PM bug #7959 (Rejected): LazyCombobox popup over sizing problem
- solved by implementing the reference ellypsis
- 02:39 PM feature request #7654 (Duplicate): New registration page existing publications combobox does 'begins with search' on author names
- this has been solved in another ticket
- 02:38 PM bug #6629: TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
- maybe also an euro+med issue (for similar problems)
- 02:38 PM task #7497 (Rejected): Dokument and add guides and hints to the UI
- in the ui the genus and species widgets show a warning and offer a new button at the same time, this should be suffic...
- 02:33 PM bug #8312 (Closed): Test, fix, improve and run Transmission engine for E+M
- copied from #3979
===
-run the TransmissionEngineDistribution-:
./description/accumulateDistributions?mode=[... - 02:28 PM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
- Generally implemented for dialogs needed in euro+med.
Still needs check for open issues/other dialogs and for not e... - 02:27 PM bug #8167: Permission denied for Submitter when adding section to newly created journal
- please test if this is still relevant
- 02:17 PM feature request #8196 (In Progress): display ortographic corrections in name relations as 'corrected name: <nameCache>'
- this needs to be done in the dbs
- 02:16 PM bug #8311 (New): fix creation of geo webservice string for multi-area mappings with different fields
- copied from #5175#note-7 for description see there
- 02:13 PM bug #8231: Name relation non
- After fixing the data issue the ticket can be closed as duplicate of #7975
- 02:11 PM bug #8310 (Closed): Issues to solve in E+M shapefile
- * add Kosovo (Yu(K) or Ko) and Serbia (Se) as area (without parent information) see #3908#note-14 **DONE**
* add par... - 02:07 PM feature request #7952 (Rejected): Registration page Maps display in PhycoBank portal
- the registration page should only show compact type information. maps will only be shown on the name page
- 01:55 PM bug #7884 (Duplicate): Replacement name not shown in Portal
- 01:52 PM task #7339 (Closed): activate clickable links for references in Phycobank Dataportal
- no longer needed in this way, we display the reference to the publication at the bottom of the reg page, this is clic...
- 01:52 PM feature request #8309 (New): Implement preferences with predicate and subject in local preferences
- Actually the preference store for the local preferences is a flat list of preferences without the possibility to defi...
- 01:46 PM bug #8018 (Worksforme): Registration page: scientific names in the citation to be shown in italics
- 01:42 PM task #7296: externalize redmine api key
- remove all these entries since the redmine communication system has been rejected
- 01:18 PM feature request #8308 (Worksforme): Extend specimen type designation editor
- The type list of the specimen type designation editor is still limited and should be extended by the following fields...
- 01:03 PM bug #8114 (Duplicate): used author name cache in nomenclatural reference
- already fixed and duplicate of another ticket
- 12:53 PM feature request #8307 (New): display fossil in the context of the taxon name
- display fossil in the context of the taxon name, in case the FOSSIL marker is set
- 11:21 AM Revision 040bf76f (cdm-dataportal): fixing titlecache usage for name rel footnotes
05/27/2019
- 06:49 PM Revision d64f1d61 (cdm-dataportal): ref #8108 showing name relationships in the name page and full name below the title
- 06:17 PM feature request #8306: Registration page links to registered taxon name
- done!
- 06:17 PM feature request #8306 (Resolved): Registration page links to registered taxon name
- Applied in changeset commit:cdm-dataportal|54c1080349223c28d6c37bc32020e7e107c7f178.
- 05:55 PM feature request #8306 (Closed): Registration page links to registered taxon name
- The registed name on the registration page should be a link and should be displayed in bold letters (name part only)
- 06:17 PM Revision 54c10803 (cdm-dataportal): fix #8306 Registration page links to registered taxon name, name parts bold
- 06:00 PM Revision 57dabcba (cdm-dataportal): refactoring: moving compose functions to pages.inc
- 05:54 PM feature request #8304 (Resolved): Name page redirects to according taxon depending on query parameter
- Applied in changeset commit:cdm-dataportal|2f65af049f9784cd0b0de8096df842491c590b31.
- 05:54 PM Revision 2f65af04 (cdm-dataportal): fix #8304 redirect from name to taxon page depending on drupal path argument, with test
- 02:56 PM Revision bc545ed2 (cdmlib): fix tests for cdmlight
- 02:14 PM Revision e53eb86e (cdmlib): fix preference service
- 02:00 PM Revision e19057f2 (cdmlib): ref #8248, #6774 Fix bean names
- 12:49 PM Revision 4d025474 (cdmlib): ref #8045: add remove to preference service and dao
- 12:28 PM Revision 63732a7c (taxeditor): ref #8045: further implementation for default/explicit value selection preference pages
- 09:58 AM Revision c20ddc4e (cdmlib): ref #8248 Implement termvocabulary import
- 09:39 AM Revision 51c10665 (cdmlib): ref #6774 Set vocabulary for partOf and kindOf terms in export
- 09:38 AM feature request #8305 (New): show number of references in referencing objects view
- mail AM:
es wäre schön, wenn wir, ähnlich wie bei der Warnung im Details View, im referenzing Obj. View noch die A... - 09:15 AM Revision 506eecd9 (cdmlib): ref #6774 Fix node hierarchy in export
- 09:11 AM Revision 6cbd3165 (cdmlib): ref #8248 Extract CDM entity creation to util
05/26/2019
- 05:55 PM feature request #8304 (Feedback): Name page redirects to according taxon depending on query parameter
- As requested in #8108 the redirection behavior of the name page to the related taxon (if there is only one) should be...
- 03:48 PM Revision c3a607ce (cdmlib): ref #8248, #6774 Extract model creation form import and export to util
- 03:30 PM Revision 2e0a90f1 (cdmlib): ref #8248 Move rdf model to import state
- 03:20 PM Revision 40be5878 (taxeditor): ref #6774 Use UUID for feature tree export
- 03:19 PM Revision 9db948f1 (cdmlib): ref #6774 Use UUID for feature tree export
- 02:21 PM Revision ed0cb955 (taxeditor): ref #6774 Fix export invocation
05/25/2019
- 09:47 AM bug #8303 (New): Improve formatting for misapplied names in search results
- Currently we get something like
"Cynosurus polybracteatus Poir., Voy. Barbarie 2: 97. 1789"
where you can't se...
05/24/2019
- 11:36 PM bug #6523 (Resolved): Correct display of misspellings in synonymy
- Dies sollte nun soweit in Ordnung sein.
Es gibt jedoch noch offene Fragen:
1. Ist es richtig, dass die "is miss... - 06:10 PM bug #6523 (Feedback): Correct display of misspellings in synonymy
- sollen misspellings überhaupt in der form "non ... nec ..." dargestellt werden?
- 11:06 PM Revision 7efd13a9 (cdm-dataportal): implementing misspelling for ref #6523; implementing name rel type filter for direct and inverse edges for #5855
- 07:10 PM bug #8252: reference ellypsis must not be applied to all reference types
- Technically the problem is solved.
As far as we keep the "bibliographic authors" issue in mind, we can close this ... - 07:07 PM feature request #7975: Implement a block to display name relations
- 
1. the main issue is perfectly implemented, clear & correct wording
2. minor issue of the d... - 04:13 PM feature request #7975: Implement a block to display name relations
- fully implemented an ready for review
- 11:52 AM feature request #7975 (Resolved): Implement a block to display name relations
- Applied in changeset commit:cdm-dataportal|ef686dd8e7c670f958e414ee6809803cc4807882.
- 06:07 PM Revision 1636cc86 (cdm-dataportal): fixing regression ref #5697: including conserverd against in non ... nec ... , ref #4177 removing dom block from inline name rels
- 04:31 PM Revision 96614dfe (cdm-dataportal): ref #4177 test for improved and more consistet implementation of the inline representation of name relationships
- 04:12 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
- one little bit is missing: we need to set the inverse label of the relationship term to "corrected name" in the datab...
- 03:36 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
- completed, please review
- 11:52 AM feature request #8196 (Resolved): display ortographic corrections in name relations as 'corrected name: <nameCache>'
- Applied in changeset commit:cdm-dataportal|ef686dd8e7c670f958e414ee6809803cc4807882.
- 03:52 PM Revision b465e8d2 (cdm-vaadin): bugfix related to initstrategy
- 03:40 PM discussion #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
- since different projects may require different representation. See for example #7975 where "has orthographic variant"...
- 02:23 PM Revision a7388a1d (cdmlib): ref #6774 Fix class cast exception
- 02:23 PM Revision 9298a53f (cdmlib): ref #6774 Add service method findVocabularyDtoByTermTypes()
- 02:22 PM Revision 4fceb02d (taxeditor): ref #6774 Implement isPageComplete()
- 01:59 PM Revision 86dde6da (cdmlib): ref #8209 modularization of reference init strategies - bug fix
- 01:46 PM Revision 974c7689 (taxeditor): ref #6774 Implement configuration wizard page of owl term export
- 11:52 AM Revision ef686dd8 (cdm-dataportal): fix #7975 fix #8196 name relationships list representation implemented
- 11:49 AM Revision 26e4e4de (cdmlib): ref #8209 modularization of reference init strategies
- 11:36 AM Revision 01ca9bae (cdmlib): ref #8209 modularization of reference init strategies and improving EntitiyInitStrategy class
- 11:22 AM Revision 1a2cb532 (cdm-vaadin): ref #8209 modularization of reference init strategies by using the EntitiyInitStrategy class
- 11:20 AM feature request #8302: Assure uniqueness of E+M reference number
- ERS:
zur Nummernvergabe: jeder Editor hatte ursprünglich einen ausreichenden Slot von Nummern, die er konsekutiv ... - 11:12 AM feature request #8302 (New): Assure uniqueness of E+M reference number
- The E+M reference number is stored as (alternative) identifier in CDM. Alternative identifiers allow duplicates (e.g....
- 11:13 AM feature request #8298 (Duplicate): Check for E+M Reference number being unique
- 09:15 AM Revision 6f6f79f6 (cdm-dataportal): ref #8182: fix error ín cdm_dataportal_preprocess_menu_local_tasks()
- 08:31 AM Revision e7e642ee (taxeditor): ref #6774 Implement feature tree comparator
- 08:29 AM Revision 398b6133 (taxeditor): ref #6774 Refactor CheckBoxTreeComposite layout
05/23/2019
- 04:22 PM task #8301 (New): Test family editor rights
- ... as defined for cichorieae in #3979 issue 4
- 04:14 PM feature request #8300 (New): Final adjustments for distribution status in E+M
- (see also related tickets)
ein paar weitere Fragen zum Verbreitungsstatus:
**1. naturalised:**
soll in E+M ... - 02:53 PM feature request #8299 (Closed): add typification column to scientific name and homotypical group in cdm light
- mail WB:
Hallo,
ich habe mir von der Ausgabeseite noch mal die Sache mit dem Typus-Textfeld angesehen. Ich denke,... - 02:19 PM Revision 639ee6f2 (cdmlib): minor
- 02:08 PM Revision 5ca1634c (cdmlib): fix sortindex in cdmlight export
- 01:39 PM Revision 97e2d1bd (cdmlib): ref #6774 Refactor export class inheritance
- 01:39 PM Revision 20821e94 (cdmlib): ref #6774 Extract all resource creation to util class
- 01:39 PM Revision c2d94ebc (taxeditor): ref #6774 Initial implementation of OWL term export wizard
- 12:45 PM Revision 868be375 (cdm-dataportal): remove blast tab if blast is not enabled
- 12:02 PM feature request #8298 (Duplicate): Check for E+M Reference number being unique
- ERS:
Ein Hinweis: diese Nummer wird ja anscheinend als Freitext angelegt, es ist also jetzt möglich, Nummern doppe... - 11:53 AM bug #8297 (Closed): Fix condensed distribution string for E+M
- for previous rules and discussions see also #3907 and other related tickets.
http://portal.cybertaxonomy.org/eurom... - 11:37 AM Revision 011c997b (cdmlib): adapt IdNamespace predicate a bit #8294
- 11:33 AM feature request #8294: Make display of ID in source and ID Namespace configurable
- When fixing please also rename predicate NameInSource. It should be IdNamespace. Also we may rename the predicate in ...
- 11:31 AM feature request #8294: Make display of ID in source and ID Namespace configurable
- The current implementation does not seem to work. I tried with
but still got both Id in ... - 11:14 AM feature request #8294 (Feedback): Make display of ID in source and ID Namespace configurable
- This issue is already mentioned in #7793 and it seems to be fixed (but maybe not yet available in Admin UI).
- 11:09 AM task #8262 (Resolved): Handle language area Wales correctly
- we now have a separate Common Name area vocabulary. Therefore this ticket should be fixed.
- 11:07 AM bug #8260 (Resolved): Details and Supplemental Data View do not save the expansion state of sections
- Fixed with commit:taxeditor|8f555f2fc0e00f5b1a203a7db7b653da250332b8
- 10:33 AM feature request #8296 (New): Add supplemental data to new/edit dialogs
- Currently when editing a new or existing instance via the dialoges it is not possible to see or edit the supplemental...
- 07:42 AM bug #8252: reference ellypsis must not be applied to all reference types
- Since there are no more obvious problems with reference ellypsis we can close this issue, agreed?
05/22/2019
- 06:08 PM bug #8252: reference ellypsis must not be applied to all reference types
- 
six section nomenclatural authors
three authors "et al." displayed. This should be acceptable... - 08:49 AM bug #8252 (Resolved): reference ellypsis must not be applied to all reference types
- The improvement is implemented, please review once the test server is updated.
- 05:06 PM Revision 2f30124c (cdm-dataportal): ref #8182 sloving problems with blast search menu items and renaming constants
- 03:04 PM Revision 8f555f2f (taxeditor): Fix expansion state preference for details and suppData view
- 02:38 PM Revision 0ca09004 (taxeditor): cleanup
- 01:58 PM Revision 66910558 (cdmlib): ref #6774 Bidirectional linking of terms and vocabularies
- 01:43 PM Revision e85bf0bc (cdmlib): ref #6774 Add util class for static methods
- 01:00 PM feature request #8295 (New): Show the synonyms of a taxon in "Name in Source" selection dialog when opening
- Normally the name in source is already in the synonymy of a taxon, so it would be nice to show the names of the synon...
- 12:57 PM feature request #8294 (Closed): Make display of ID in source and ID Namespace configurable
- The display of ID in Source and ID Namespace should be configurable, the preference predicates are available already ...
- 12:46 PM feature request #8293 (Feedback): Distribution preferences for details view should be serverside preferences
- the preferences for distribution data (areas and status) used in details view should be serverside preferences
- 12:38 PM bug #8292: saving text with special characters throws exception
- for the text throwing the exception see the attachment. (putting it in the description of the ticket throws an except...
- 12:35 PM bug #8292 (New): saving text with special characters throws exception
- Saving a text with special characters throws exception:
~~~ text
login : s.vonmering
editor version : 5.7.2
ser... - 12:21 PM bug #8291 (New): saving text with special characters throws exception
- 12:04 PM Revision cc00ba7d (taxeditor): Remove vocabulary from cache when its terms are edited
- 12:04 PM Revision e7e93e51 (cdmlib): Set vocabulary DTO when creating a term DTO
- 11:04 AM Revision 21eae050 (cdmlib): ref #6774 Refactor term tree export
- - unify resource creation methods
- 11:04 AM Revision 369ff802 (cdmlib): ref #6774 Implement term vocabulary OWL export (partially)
- 11:04 AM Revision 242542cb (cdmlib): ref #6774 Use term node uuid for node resource
- 08:47 AM Revision b25e560f (cdmlib): ref #8252 preserving section authors and better title compentation
- 08:33 AM feature request #8289 (Closed): Add "Open in RefObj view" to term editor context menu
05/21/2019
- 10:22 PM Revision a77d754b (cdmlib-apps): final changes to E+M import
- 10:15 PM Revision c6f58f13 (cdmlib): add some term uuids to E+M import
- 10:12 PM feature request #8286 (Resolved): Add cm as unit term to CDM
- added to cdmlib too. Please review.
- 10:07 PM feature request #8286: Add cm as unit term to CDM
- See additivity_ontology for uuid and labels.
950c5919-53e4-47ab-9efd-0ea86daa98ca
centimeter
cm
- 10:10 PM Revision 61a43718 (cdmlib): ref #8286 add centimeter to MeasurementUnit
- 10:09 PM Revision ce87358e (cdmlib): ref #8189 adapt tests for ConfigFileUtilTest
- 07:30 PM feature request #8288 (New): Use plural for e.g. Common Name feature in dataportal
- If a plural exists we may think about using the plural for a feature in dataportal.
For details see #8147 - 04:16 PM Revision 0731be34 (taxeditor): ref #6774 Adapt to service layer change
- 02:59 PM Revision 4504940c (cdmlib): ref #6774 Refactor OWL export
- - move OWL model to export state
- 12:16 PM Revision fa19287f (cdmlib): minor
- 11:59 AM discussion #6678 (Feedback): [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
- please answer to the questions in comment 3
- 11:57 AM Revision 23a017dd (cdm-dataportal): ref #6678 showing the prefix 'orth. var.' for orthogtapic variants
- 11:55 AM bug #8252 (In Progress): reference ellypsis must not be applied to all reference types
- During a phone call today we decided to give the following solution a try:
1. The section author team will be trun... - 10:17 AM Revision ffb73a43 (cdmlib): fix sortindex for root nodes and harmonize column names
- 10:17 AM Revision 2b161626 (cdmlib): add check for dna data
- 08:20 AM feature request #5855 (Closed): potential improvements in settings for name relationship types
- i am closing this issue now, please reopen I if you feel like you want to review this.
- 08:13 AM feature request #5855 (Resolved): potential improvements in settings for name relationship types
- Applied in changeset commit:cdm-dataportal|cd4f8f20a3ebe850407af662a1f3295bd2b3c488.
- 08:13 AM Revision cd4f8f20 (cdm-dataportal): fix #5855 improving name relations settings:
- - limiting select options
- differentiating from releations to be displayed in name page
05/20/2019
- 06:34 PM Revision 16592d77 (cdm-dataportal): ref #7975 renaming name relationshiop render method to emphazize on inline nature of the result
- 06:28 PM feature request #7975: Implement a block to display name relations
- This is rather a request for a new feature than an improvement for the existing implementation which creates an inlin...
- 04:41 PM task #5856 (Feedback): [DISCUSS] Consider implemeting additional name relationships
- Is this still relevant or will the original spelling relation be removed anyway in turn of solving #3967?
- 04:26 PM discussion #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
- I am having two questions regarding the ticket description:
> Maybe it is even enough to only show "orth. var." ... - 03:14 PM bug #5774 (Closed): cdmserver misses to detect some errors in failed instances
- It occurred again in the demo1 server.
Problem fixed.
Since it is quite time consuming to do do all the testing... - 03:11 PM bug #5774 (Resolved): cdmserver misses to detect some errors in failed instances
- Applied in changeset commit:cdm-server|0d7b39c76dff44342ce55bf721168a6974fccdab.
- 03:10 PM bug #5774 (In Progress): cdmserver misses to detect some errors in failed instances
- 03:11 PM Revision 0d7b39c7 (cdm-server): fix #5774 configuring webapp contexts to re-throw errors on startup
- 01:16 PM feature request #8284 (Resolved): starting a registration for an existing name causes the name editor to pop up in read only mode
- Vorschlag übernommen für beide Fälle. Dann können wir dieses Ticket schließen?
- 01:15 PM Revision 2011fbd2 (cdm-vaadin): ref #8284 changing user hint regarding how to proceed with entering types for an existing name
- 01:01 PM Revision a0d2a22c (cdm-dataportal): ref #8287 comment to re-enable multi selection of options once the web service bug is fixed
- 12:59 PM feature request #7966: Registration search simplify type select options
- @Henning: please review
- 12:58 PM feature request #7966: Registration search simplify type select options
- This issue is solved, however there is a problem in the service method driving the search (#8287) due to which the op...
- 12:37 PM feature request #7966 (Resolved): Registration search simplify type select options
- Applied in changeset commit:cdm-dataportal|84ec1c1b58a6d4667402a3f456f90e76c92ad5c5.
- 12:56 PM bug #8287 (Closed): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
- In case the collection of typeDesignationStatusUuids contains both, a `null` value and UUIDs the request fails.
Th... - 12:38 PM Revision dc58a71b (cdm-dataportal): fix #7966 using the TypeDesignationStatusFilter to simplify the registration search by status type
- 12:37 PM Revision 84ec1c1b (cdm-dataportal): fix #7966 using the TypeDesignationStatusFilter to simplify the registration search by status type
- 12:35 PM Revision fa2b2dbb (cdmlib): ref #7966 preparing web service contollers to search for NULL type status via UUID parameter
- 12:33 PM feature request #7610 (Duplicate): Type search in PhycoBank Portal
- Ok to close this as duplicate given by henning in #7965#note-11 implicitely
- 10:40 AM feature request #8286 (Closed): Add cm as unit term to CDM
- We may also add cm only to the additivity production DB
05/19/2019
- 11:08 PM bug #6938 (Resolved): Tasks before a new Euro+Med import
- should be resolved, I did run all the steps (1 mail to ERS is still open, about corrupt hierarchies for Polygonum etc.)
- 09:43 PM task #7369 (Resolved): Handle taxonomically valueless taxa correctly
- The taxa are now all exported to a common root taxon "Valueless". They can be moved somewhere else after import if ne...
- 09:43 PM feature request #8285 (New): Handle taxonomically valueless taxa in data portal
- for details see #7369#note-15
relevant taxa are currently marked with marker "taxonomically valueless"
![](clip...
05/18/2019
- 08:08 AM feature request #7790: [DISCUSS] E+M: Language-Area Mapping
- Maybe it is an overload. In TaxEditor it can be handled by showing those areas that have been used already for the gi...
- 07:51 AM feature request #8281: Doubtful flag for TaxonNode
- ERS:
ich sehe das genauso wie du. "Unplaced" taxa sind gar nicht hierarchisch eingeordnet, während provisional bed... - 07:49 AM bug #7786 (Resolved): ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- ERS:
dies sind vermutlich alles Tippfehler. Doppelte Leerzeichen zwischen den Referenznummern in den Greuter-Table... - 07:48 AM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- most of them seem to be errors, especially those having no number at all. Others can not be resolved.
05/17/2019
- 04:13 PM bug #8278 (Resolved): LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator
- most probably fixed - please close if the LIE no longer occurs.
- 04:11 PM feature request #7965 (Closed): Registration search simplify type select options
- 04:07 PM feature request #7965: Registration search simplify type select options
- okay
- 04:05 PM feature request #7965: Registration search simplify type select options
- NPE fixed by commit:cdm-vaadin|5fd9990b
So I will close this ticket now.
#7966 will be implemented in according... - 03:40 PM feature request #7965: Registration search simplify type select options
- no further problems:
merge of entries without accidents:
Lectotype = merge of lectotype (name) of genus
and
Lec... - 03:34 PM feature request #7965: Registration search simplify type select options
- Hallo Andreas,
bin in Test List Type Status,
wenn ich dort -none- auswähle, bekomme ich :
~~~
java.lang.NullP... - 04:02 PM Revision 5fd9990b (cdmlib): fixing NPE in TypeDesignationStatusFilter processing when '- none -' is selected
- 04:01 PM Revision c50b9988 (cdm-vaadin): ref #8278 supporting two levels of inRefernces in init-strategies related to ellypsed reference comboboxes
- 03:31 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- beide Versionen sind streng genommen suboptimal:
statt Click on "Save" to proceed with entering the typifications ... - 03:26 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Im anderen Fall, nom-ref fehlt, lautet der letzte Satz: '*Click on "Save" to proceed with entering the typifications ...
- 03:18 PM feature request #8284 (In Progress): starting a registration for an existing name causes the name editor to pop up in read only mode
- Ok, verstanden!!!!
Dann ändere ich den Text so wie du es vorgeschlagen hast. - 03:00 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Nein, nur mit Save wird der Name in den Workingset gestellt. Nur von dort aus kann selektiert werden, ob name oder sp...
- 02:56 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- > Click "Save" to start a type designation
verstehe ich das richtig? Der Dialog zur Auswahl der Type-Designation s... - 02:40 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Also alles so lassen, außer:
statt:
Click "Save" to proceed
Click "Save" to start a type designation
Wäre das ... - 02:35 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Wenn die Referenz fehlt kann nur diese und das Citation-Detail bearbeitet werden, dann speichert "Save" auch die Ände...
- 02:21 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Wir hatten den Name editor eingebaut, weil wir Namen ohne Referenzen haben, die erst mal eingegeben werden müssen. Wi...
- 02:11 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- At the bottom of the editor an notification is shown for the user:
Can we improve this te... - 02:01 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- This is only a question of usability.
When I closed the name editor with save-button, the name was put into the work... - 01:57 PM feature request #8284 (Feedback): starting a registration for an existing name causes the name editor to pop up in read only mode
- it is always the name editor that pops up. This way the user can review the name before actually creating the registr...
- 01:50 PM feature request #8284 (Closed): starting a registration for an existing name causes the name editor to pop up in read only mode
- Registered name selected, double click on "registration for an existing name"
Result: the (read-only) name editor po... - 03:22 PM feature request #7610 (Feedback): Type search in PhycoBank Portal
- Shall we close this ticket in favor of implementing #7966 which suggests a different solution which is exactly the sa...
- 02:47 PM bug #8279 (Closed): ClassCastException in CdmUserHelper.user()
- 02:46 PM bug #8279 (Resolved): ClassCastException in CdmUserHelper.user()
- Applied in changeset commit:cdmlib|b7723abf3053f0e9be6dae43c191048aa67729da.
- 02:47 PM Revision c251b820 (cdm-vaadin): ref #8279 removing unused call to CdmUserHelper.user()
- 02:46 PM Revision 16dabe1c (cdmlib): fixing wording in logging
- 02:46 PM Revision b7723abf (cdmlib): fix #8279 avoiding ClassCastExceptin in CdmUserHelper
- 02:28 PM Revision 9997fca9 (cdmlib): revert commit e358ae186 and adapt return type
- 01:58 PM bug #8252: reference ellypsis must not be applied to all reference types
not realy, people do not know alle given names.
How I could differentiat between D.M. (= Ditmar Metzeltin) and D.M...- 01:53 PM bug #8252: reference ellypsis must not be applied to all reference types
- Would using the acronyms or truncating the names of the section authors to acronyms be helpful?
e.g.:
* Kulikowsy... - 01:09 PM Revision 1bc072c0 (cdmlib-apps): add state to getVocabulary for imports
- 01:02 PM Revision bc9a9e44 (cdmlib): add E+M common name area voc uuid
- 01:01 PM Revision 110bd37f (cdmlib): ref #8189 fix user.home in AccountStore
- 12:59 PM Revision 9d359dc9 (cdmlib): use state in getVocabulary
- 12:18 PM Revision ffbeace5 (cdm-dataportal): Merge tag '5.7.1' into develop
- tagging version 5.7.1
- 12:18 PM Revision 4b239fc7 (cdm-dataportal): Merge branch 'hotfix/5.7.1'
- 12:17 PM Revision 64a5b05a (cdm-dataportal): Merge branch 'develop' into hotfix/5.7.1
- 10:56 AM bug #8229: reload of the bulkeditor does not work correctly
- The problem was that changes made in name editor did not appear in bulk editor after a new search.
This is a follo... - 06:52 AM bug #8229 (Feedback): reload of the bulkeditor does not work correctly
- I am not sure what to test here. Do you have a step by step explanation of what did not work before?
- 10:25 AM Revision ae7ade6d (cdm-dataportal): change herbarium to collection in specimen table
- 08:36 AM feature request #8283 (Resolved): Allow adding media to terms in taxeditor
- Applied in changeset commit:taxeditor|d418413628bd797221e1c9101ec57af041f1dab5.
- 08:31 AM feature request #8283 (Closed): Allow adding media to terms in taxeditor
- This could be done in the details view for example
- 08:36 AM Revision d4184136 (taxeditor): fix #8283 Add media section to term details view
- 06:40 AM Revision e246a4ee (taxeditor): Fix NPE when connecting to local cdm server with dev settings
05/16/2019
- 04:53 PM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
- TaxonNode will have a doubtful flag (#8281). We need to implement this in TaxEditor, too.
Important is that the la... - 04:51 PM bug #8280 (Closed): polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder
- 03:57 PM bug #8280 (Resolved): polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder
- Applied in changeset commit:cdm-dataportal|55a557d83c8145f8fcd3192f02001d2a9adb8b9c.
- 03:55 PM bug #8280 (Closed): polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder
- In the http://cichorieae.e-taxonomy.net/portal/admin/appearance/settings/zen_dataportal the polyfills folder check re...
- 04:41 PM feature request #8281 (In Progress): Doubtful flag for TaxonNode
- 04:33 PM feature request #8281: Doubtful flag for TaxonNode
- Hallo Eckhard,
folgende Taraxacum Taxa haben alle in der Beziehung zu ihrem Parent ein „provisional“ Flag gesetzt.... - 04:33 PM feature request #8281 (Closed): Doubtful flag for TaxonNode
- DISCUSS: Is this the same as the "unplaced" flag?
ERS:
dies bedeutet in allen Fällen, dass die Editoren sich ni... - 04:41 PM Revision f0e89021 (taxeditor): Remember login for localhost mgd.
- 04:08 PM task #7448: Replace auct. reference
- we will do all MAN cleanup after migration
- 04:01 PM bug #7447 (Resolved): ERS: Fix misapplied name issues for E+M common names.
- 03:57 PM Revision 55a557d8 (cdm-dataportal): fix #8280 fixing polyfills folder check for insrtallations in subfolders
- 03:19 PM task #7435: Handle also published in correctly
- Before closing this ticket we still need to clean remaining note fields.
Also we need to check how this is shown i... - 03:15 PM Revision 8b6ed3fc (taxeditor): ref #8135 Implement TextualTypeDesignation detail element
- 03:07 PM bug #8252: reference ellypsis must not be applied to all reference types
- For a pragmatic approach (as of 16 May 2019):
Currently: only 20% authors can be recognized. That means that each ne... - 01:33 PM bug #8252: reference ellypsis must not be applied to all reference types
- Wolf-Henning Kusber wrote:
> Ellipsis must not be applied to in-authors/nomenclatural author team.
> Example:
> ... - 02:46 PM bug #7896 (Closed): NPE, NullPointerException in RelationshipTermBase
- It's fixed since http://api.cybertaxonomy.org/flora-malesiana/portal/taxon/09d427ff-a520-413e-b86b-e39abac29f52/synon...
- 02:38 PM bug #7953: Book in BookSeries: incomplete titleCache misses series title
- Hi Andreas this is your turn. Please see Hennings answer in comment !#10
- 02:36 PM feature request #8193 (Closed): TaxonNamePopupEditor: add select form element for Nomenclatural status
- I don't have this little grey box in my status bar while typing. I think we should just ignore this little artifact a...
- 02:20 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- Hi Henning
i could not reproduce the problem that
> Genera imported for the taxon graph AND species eintered i... - 02:11 PM bug #7881 (Closed): reference selection combobox broken after error in ...
- the cascade="all-delete-orphan" problems did not occur again
- 02:10 PM bug #8099 (Closed): Error saving name type designation editor due to problem in poupeditor context
- the problem which augments other exceptions has been fixed, since further information on the root cause has been lost...
- 02:01 PM bug #8160 (Closed): CdmBeanItemContainerFactory as readonly service bean
- The implementation works as expected and the cascade="all-delete-orphan" problems did not occur again
- 02:01 PM bug #8065 (Closed): HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table
- The implementation works as expected and the cascade="all-delete-orphan" problems did not occur again
- 02:00 PM bug #8075 (Closed): multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations
- the cascade="all-delete-orphan" problems did not occur again
- 01:59 PM bug #8158 (Closed): cascade="all-delete-orphan" problem when ....
- the cascade="all-delete-orphan" problems did not occur again
- 01:50 PM Revision e43f8991 (cdm-vaadin): removing hard coded debug level from logger
- 01:48 PM bug #8279 (Closed): ClassCastException in CdmUserHelper.user()
- found in the server log:
~~~
com.vaadin.server.ServerRpcManager$RpcInvocationException: Unable to invoke method c... - 01:45 PM bug #8278 (Closed): LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator
- found in the server log
~~~
[phycobank] 2019-05-07 15:37:04,623 ERROR [qtp1207140081-35] [com.flowingcode.vaadin.... - 12:55 PM bug #8277 (Duplicate): Username (and other fields) should allow c&p
- das Feld username im User Details View, sollte lediglich schreibgeschützt sein. Kopieren sollte noch möglich sein für...
- 11:35 AM bug #8189: Allow configuration of 'user.home' via the spring environment
- > The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows systems when running in maven
... - 10:21 AM Revision 75b2f55e (cdmlib-apps): log special pro parte relations
- 10:21 AM Revision 1a2954e6 (cdmlib-apps): ref #7823 add createdUpdated info to occurrences for E+M import
- 10:20 AM Revision da6c2341 (cdmlib-apps): ref #7823 deduplicate usernames depending on secrefs, use xml imports (and other imports) as source, not username
- 10:11 AM bug #7823 (Resolved): User Persons are not deduplicated
- fixed
- 09:09 AM Revision e358ae18 (cdmlib): fix findTitleCache in service layer
- 09:08 AM Revision f15f8e33 (cdmlib): ref #7470 preliminary set text to transient in TextualTypeDesignation
- 06:38 AM Revision 509e35a1 (cdmlib): make referenceTitleCache index consistent
- 06:37 AM Revision 703f7ef8 (cdmlib): ref #7470 preliminary set isVerbatim to transient in TextualTypeDesignation
05/15/2019
- 02:57 PM Revision 824a9c9a (cdmlib): ref #7470 add TextualTypeDesignation.isVerbatim to test schemas
- 02:25 PM Revision 6fab0d12 (cdmlib): ref #7470 add TextualTypeDesignation to hibernate.cfg
- 12:40 PM Revision 98349912 (taxeditor): ref #6774 Adapt to service layer changes
- 10:48 AM feature request #8135 (In Progress): Implement verbatim type information in TaxEditor
- 10:42 AM feature request #8248 (In Progress): Implement OWL import
- 09:55 AM bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes
- We should fix this, because the preference page is empty at the moment
- 09:17 AM feature request #8276 (New): [DISCUSS] References need bibliographicAuthorCache
- The wanted bibliographic citation for an author may differ from the standard citation. Therefore we may need a cache ...
- 08:55 AM Revision f06516e8 (cdmlib): ref #6774 Export term vocabulary for each term
- 08:07 AM Revision ea70ea0e (cdmlib): ref #6774 Refactor export for multiple term trees
- 08:06 AM feature request #6774 (In Progress): Implement OWL export
05/14/2019
- 01:47 PM feature request #8257 (Feedback): Remove factory methods for term node creation
- @Andreas M.: Can you please have look at the last remaining factory method which is used in one last spot:
~~~java... - 12:26 PM feature request #8046 (Rejected): Term lists in term manager should be positiv lists
- the term list are already positiv lists.
- 12:01 PM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- All invalid names (term ids may need to be adapted)
~~~
SELECT ns.type_id, ns.citation_id, n.nameCache, n.titleCa... - 11:45 AM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- We do not have any invalid designation relationships in E+M (BM):
~~~
SELECT *
FROM RelPTaxon rel
WHERE RelQu... - 11:43 AM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- ERS (2018-03-28):
Dear all,
to facilitate the discussion about the status "invalid designation", I am continuin... - 11:36 AM task #8275 (Worksforme): [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- Is this the same?
In BM dataportal version of E+M it looks like ALL nom. inval. are shown as inval. desig.:
![... - 11:51 AM Revision be44847d (taxeditor): minor
- 11:22 AM Revision cc1302bd (taxeditor): ref #8045: check whether all db preferences are deleted from DB if value is default value
- 08:46 AM Revision 0980a8e8 (taxeditor): fix NPE in TaxonNodeWizard
05/13/2019
- 09:05 PM Revision 3e0f59b5 (cdmlib-apps): set all taxrel references to null in E+M import if same as sec
- 08:21 PM Revision 7fe80463 (cdmlib-apps): set parent-child references to null in E+M import if same as sec
- 08:19 PM Revision a6d6a2c7 (cdmlib): minor
- 03:58 PM bug #8189 (Feedback): Allow configuration of 'user.home' via the spring environment
- The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows systems when running in maven (no...
- 02:38 PM bug #8229 (Resolved): reload of the bulkeditor does not work correctly
- 10:20 AM bug #8229: reload of the bulkeditor does not work correctly
- the reload works for changes of the name itself, but the descriptions are not loaded again.
- 02:20 PM feature request #4011: disallow changing publish flag for users with unsuffcient rights
- Check if this is still an open issue
- 02:11 PM Revision 45db0045 (taxeditor): ref #8229: update correct property path for search in name and taxon bulkeditor
- 02:06 PM feature request #7799 (Resolved): AM: Parse authorteams
- This should be fixed. We may check for not atomized authors after import again
- 01:55 PM task #7816: Handle nomStatus references correctly
- We will decide this only after migration
- 12:49 PM task #7436: Handling verbatimDate in E+M import
- A lot of work has been done already. The final work on notes (and similar) we will do after the import.
- 11:30 AM bug #8274 (New): Very large taxa (synonymies) can not be handled by the dataportal
- copied from #1985
for more information see there.
Example taxon: Hieracium murorum species group (http://test.... - 09:58 AM Revision c3d73ea5 (cdmlib): fix #8264: add published to synonym table
- 09:53 AM feature request #8264: excluded and excluded notes in cdmlight export
- Hallo,
ja, da hatte ich noch nicht an die Synonyme gedacht (die ja auch in Taxon Nodes nicht auftauchen würden). Vie...
05/12/2019
- 12:52 PM task #7713: Atomize last scrutiny references
- we will do this after migration
- 12:50 PM task #7796 (Resolved): [CHECK] Handle Bibliography Name Facts correctly
- As in note 11 it was decided not to import them at all this ticket is fixed (in code this is already implemented)
- 11:21 AM task #7796: [CHECK] Handle Bibliography Name Facts correctly
- Move to check if they are really not shown in production portal.
- 11:15 AM bug #7828: Remove date published from journals in E+M
- This is generally solved. I final check should be done after import. (currently the 2 above issues are still open)
- 11:14 AM bug #7828: Remove date published from journals in E+M
- AM:
folgende 2 Journals haben noch ein Datum, was eigentlich nicht sein soll (der Artikel soll das Datum haben):
... - 10:43 AM feature request #3990 (Resolved): [DISCUSS] How to implement citation suggestion to each taxon
- The discussion is finished. We may check after migration if everything looks like expected and what still needs to be...
- 10:40 AM bug #3992 (Resolved): [CHECK] Use last scrutiny instead of sec reference
- Generally this worked. Special cases will be handled in separate tickets.
After import we will need to check all t... - 08:12 AM Revision ad54ab74 (cdmlib-apps): latest changes to GreeceImageActivator
- 07:19 AM bug #7075 (In Progress): Excel import for images
05/10/2019
- 02:29 PM Revision 61f907d3 (taxeditor): Merge branch 'hotfix/5.7.2'
- 01:15 PM task #7319 (Resolved): [CHECK] Import synonyms correctly in E+M
- This seems to be fixed. There are only pro parte/partial synonyms left in the candidates list. And they seem to be ha...
- 01:12 PM Revision 1f183072 (taxeditor): fix factual data view for name facts
- 01:07 PM Revision f70fdd1a (taxeditor): Updated version in pom / project files to taxeditor version : 5.7.2 and cdmlib version : 5.7.0
- 01:05 PM feature request #8273 (Feedback): abcd import: check for all specimen for DNA in DNABank
- To get the dna for a specimen check the dnaBank with following path:
~~~
<like path='/DataSets/DataSet/Units/Unit... - 01:02 PM Revision f7e044c5 (taxeditor): fix factual data view for name facts
- 12:49 PM task #7341 (Resolved): [Check] CommonName import issues
- This is generally solved. We may want to check a last time after import if facts and atomized common names are fully ...
- 12:45 PM task #7346 (Resolved): [CHECK] Use separate area vocabulary for common names
- This is generally solved. We only need to discuss how "Wales" should be handled as it is the only area which does not...
- 12:43 PM Revision 756e32b0 (cdmlib-apps): add explicit handling for E+M status I(P)
- 12:41 PM Revision c268fd2e (cdmlib-apps): ref #7346 adapt E+M area import to work correctly
- 12:32 PM task #8272 (New): Add includedIn relations to E+M areas
- this can be done only after terms have been refactored.
SOme ideas can be found in description of #7346. - 12:02 PM bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies
- This generally should not be possible!!
An OrderedTerm must NEVER be moved to an unordered vocabulary. AND currently... - 10:31 AM feature request #8264 (Resolved): excluded and excluded notes in cdmlight export
- Applied in changeset commit:cdmlib|82e89bf1fa44953ae1f9f162948b49cb0f385150.
- 10:31 AM Revision 82e89bf1 (cdmlib): fix #8264: add excluded, unplaced and published to taxon table of cdm light export
- 09:44 AM feature request #7433 (Resolved): new service method to get specimen by genetic AccessionNumber
05/09/2019
- 03:22 PM bug #8271 (Duplicate): Format for aggregates with author and nom. ref. correctly
- 03:18 PM bug #8271 (Duplicate): Format for aggregates with author and nom. ref. correctly
- maybe there is somewhere a similar ticket.
ERS (2014):
wenn Autoren und nom.refs bei rank=aggregate vorhanden s... - 01:12 PM bug #8270 (New): TermDTOs with an orderIndex are ordered in unordered term vocabularies
- To reproduce this behavior:
1. Open the term editor for states.
1. Move a term to the "State" vocabulary (Must be... - 11:33 AM Revision d960a7a1 (taxeditor): Merge branch 'hotfix/5.7.1'
- 10:27 AM Revision 247d3114 (cdmlib-apps): Add missing explicit sources check to E+M import validation
- 10:26 AM Revision 67e58b3f (cdmlib-apps): remove some areas from E+M area Import
- 09:58 AM feature request #8269 (New): check all parts of the editor whether it handles the expand correct
- We should have a look on the whole application where the state of the part is saved and where not.
There are loca... - 09:36 AM Revision ad568992 (taxeditor): ref #8263 Simplify refresh logic
- - refresh is invoked on the entire tree since caching the children
already boosts the performance - 09:35 AM Revision 2b71b448 (taxeditor): ref #8263 Simplify refresh logic
- - refresh is invoked on the entire tree since caching the children
already boosts the performance - 09:13 AM feature request #8268 (New): Add term count to term vocabularies in term editor
- The term count could be shown in the label of the vocabulary like `<voc_name> (count)`
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