Activity
From 04/30/2019 to 05/29/2019
05/29/2019
- 07:44 PM feature request #8318 (In Progress): TaxonName processing for taggedFullTitle
- 07:37 PM feature request #8318 (Closed): TaxonName processing for taggedFullTitle
- The TaxonName.taggedFullTitle needs different processing than the Taxon.taggedTitle
- 05:42 PM feature request #8317 (Closed): Omit ex-author if ex-author=author
- If and only if ex author = author the ex author is not included into the author teams due to the ICN 46.10.
This is ... - 02:36 PM task #5857: show nomenclatural status for for representations of TaxonName
- no need to discuss this with the users. The display of the nom status can be configured via the "Name render templates"
- 12:41 PM bug #8316: Endless loop when editing name in source of distribution
- please review
- 12:30 PM bug #8316 (Resolved): Endless loop when editing name in source of distribution
- Applied in changeset commit:taxeditor|9b4eaf57527243baf4b517d19f90b3c6a4f3d18c.
- 12:28 PM bug #8316 (Closed): Endless loop when editing name in source of distribution
- mail AM:
also bei nameUsedInSource bekomme ich das weiterhin regelmäßig, spätestens beim 2. oder 3. Mal. Kannst du... - 11:02 AM bug #8315: Parsing existing references with inReferences changes the inReference
- please review
- 10:19 AM bug #8315: Parsing existing references with inReferences changes the inReference
- Should I review?
- 09:19 AM bug #8315 (Resolved): Parsing existing references with inReferences changes the inReference
- Applied in changeset commit:taxeditor|c9d22df2150151a1181ff5c8b8167e1ff5896a73.
- 09:18 AM bug #8315: Parsing existing references with inReferences changes the inReference
- This problem appears because the parser checks whether the inreference already exists in DB and when one or more refe...
- 09:13 AM bug #8315 (Closed): Parsing existing references with inReferences changes the inReference
- mail Mareike Liese:
Hallo,
leider kann ich in der Datenbank nichts speichern.
Ich hab über die Art auf Enter g... - 10:37 AM bug #6523 (Feedback): Correct display of misspellings in synonymy
- ich nehme mal Henning hier mit 'rein und übergebe ihm das Ticket.
@Henning: Kannst du dir bitte die beiden Fragen...
05/28/2019
- 10:15 PM bug #6523: Correct display of misspellings in synonymy
- Andreas Kohlbecker wrote:
> sollen misspellings überhaupt in der form "non ... nec ..." dargestellt werden?
würde... - 05:31 PM feature request #8314 (Closed): TaxonName provides the FullTitleCache as TaggedText
- In order to display the nomenclatural status in the DataPortal name page, etc it is required to obtain the tagged ful...
- 02:58 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
- If a cell has mutliple categorical data values and you click on it, the data is completely deleted. This does not hap...
- 02:44 PM feature request #7714 (Rejected): PhycoBank UI Restrictions for reference types
- this is avoided to some extend, but we will not enforce this further
- 02:41 PM bug #7959 (Rejected): LazyCombobox popup over sizing problem
- solved by implementing the reference ellypsis
- 02:39 PM feature request #7654 (Duplicate): New registration page existing publications combobox does 'begins with search' on author names
- this has been solved in another ticket
- 02:38 PM bug #6629: TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
- maybe also an euro+med issue (for similar problems)
- 02:38 PM task #7497 (Rejected): Dokument and add guides and hints to the UI
- in the ui the genus and species widgets show a warning and offer a new button at the same time, this should be suffic...
- 02:33 PM bug #8312 (Closed): Test, fix, improve and run Transmission engine for E+M
- copied from #3979
===
-run the TransmissionEngineDistribution-:
./description/accumulateDistributions?mode=[... - 02:28 PM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
- Generally implemented for dialogs needed in euro+med.
Still needs check for open issues/other dialogs and for not e... - 02:27 PM bug #8167: Permission denied for Submitter when adding section to newly created journal
- please test if this is still relevant
- 02:17 PM feature request #8196 (In Progress): display ortographic corrections in name relations as 'corrected name: <nameCache>'
- this needs to be done in the dbs
- 02:16 PM bug #8311 (New): fix creation of geo webservice string for multi-area mappings with different fields
- copied from #5175#note-7 for description see there
- 02:13 PM bug #8231: Name relation non
- After fixing the data issue the ticket can be closed as duplicate of #7975
- 02:11 PM bug #8310 (Closed): Issues to solve in E+M shapefile
- * add Kosovo (Yu(K) or Ko) and Serbia (Se) as area (without parent information) see #3908#note-14 **DONE**
* add par... - 02:07 PM feature request #7952 (Rejected): Registration page Maps display in PhycoBank portal
- the registration page should only show compact type information. maps will only be shown on the name page
- 01:55 PM bug #7884 (Duplicate): Replacement name not shown in Portal
- 01:52 PM task #7339 (Closed): activate clickable links for references in Phycobank Dataportal
- no longer needed in this way, we display the reference to the publication at the bottom of the reg page, this is clic...
- 01:52 PM feature request #8309 (New): Implement preferences with predicate and subject in local preferences
- Actually the preference store for the local preferences is a flat list of preferences without the possibility to defi...
- 01:46 PM bug #8018 (Worksforme): Registration page: scientific names in the citation to be shown in italics
- 01:42 PM task #7296: externalize redmine api key
- remove all these entries since the redmine communication system has been rejected
- 01:18 PM feature request #8308 (Worksforme): Extend specimen type designation editor
- The type list of the specimen type designation editor is still limited and should be extended by the following fields...
- 01:03 PM bug #8114 (Duplicate): used author name cache in nomenclatural reference
- already fixed and duplicate of another ticket
- 12:53 PM feature request #8307 (New): display fossil in the context of the taxon name
- display fossil in the context of the taxon name, in case the FOSSIL marker is set
05/27/2019
- 06:17 PM feature request #8306: Registration page links to registered taxon name
- done!
- 06:17 PM feature request #8306 (Resolved): Registration page links to registered taxon name
- Applied in changeset commit:cdm-dataportal|54c1080349223c28d6c37bc32020e7e107c7f178.
- 05:55 PM feature request #8306 (Closed): Registration page links to registered taxon name
- The registed name on the registration page should be a link and should be displayed in bold letters (name part only)
- 05:54 PM feature request #8304 (Resolved): Name page redirects to according taxon depending on query parameter
- Applied in changeset commit:cdm-dataportal|2f65af049f9784cd0b0de8096df842491c590b31.
- 09:38 AM feature request #8305 (New): show number of references in referencing objects view
- mail AM:
es wäre schön, wenn wir, ähnlich wie bei der Warnung im Details View, im referenzing Obj. View noch die A...
05/26/2019
- 05:55 PM feature request #8304 (Feedback): Name page redirects to according taxon depending on query parameter
- As requested in #8108 the redirection behavior of the name page to the related taxon (if there is only one) should be...
05/25/2019
- 09:47 AM bug #8303 (Resolved): Improve formatting for misapplied names in search results
- Currently we get something like
"Cynosurus polybracteatus Poir., Voy. Barbarie 2: 97. 1789"
where you can't se...
05/24/2019
- 11:36 PM bug #6523 (Resolved): Correct display of misspellings in synonymy
- Dies sollte nun soweit in Ordnung sein.
Es gibt jedoch noch offene Fragen:
1. Ist es richtig, dass die "is miss... - 06:10 PM bug #6523 (Feedback): Correct display of misspellings in synonymy
- sollen misspellings überhaupt in der form "non ... nec ..." dargestellt werden?
- 07:10 PM bug #8252: reference ellypsis must not be applied to all reference types
- Technically the problem is solved.
As far as we keep the "bibliographic authors" issue in mind, we can close this ... - 07:07 PM feature request #7975: Implement a block to display name relations
- ![](picture764-1.png)
1. the main issue is perfectly implemented, clear & correct wording
2. minor issue of the d... - 04:13 PM feature request #7975: Implement a block to display name relations
- fully implemented an ready for review
- 11:52 AM feature request #7975 (Resolved): Implement a block to display name relations
- Applied in changeset commit:cdm-dataportal|ef686dd8e7c670f958e414ee6809803cc4807882.
- 04:12 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
- one little bit is missing: we need to set the inverse label of the relationship term to "corrected name" in the datab...
- 03:36 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
- completed, please review
- 11:52 AM feature request #8196 (Resolved): display ortographic corrections in name relations as 'corrected name: <nameCache>'
- Applied in changeset commit:cdm-dataportal|ef686dd8e7c670f958e414ee6809803cc4807882.
- 03:40 PM discussion #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
- since different projects may require different representation. See for example #7975 where "has orthographic variant"...
- 11:20 AM feature request #8302: Assure uniqueness of E+M reference number
- ERS:
zur Nummernvergabe: jeder Editor hatte ursprünglich einen ausreichenden Slot von Nummern, die er konsekutiv ... - 11:12 AM feature request #8302 (New): Assure uniqueness of E+M reference number
- The E+M reference number is stored as (alternative) identifier in CDM. Alternative identifiers allow duplicates (e.g....
- 11:13 AM feature request #8298 (Duplicate): Check for E+M Reference number being unique
05/23/2019
- 04:22 PM task #8301 (New): Test family editor rights
- ... as defined for cichorieae in #3979 issue 4
- 04:14 PM feature request #8300 (New): Final adjustments for distribution status in E+M
- (see also related tickets)
ein paar weitere Fragen zum Verbreitungsstatus:
**1. naturalised:**
soll in E+M ... - 02:53 PM feature request #8299 (Closed): add typification column to scientific name and homotypical group in cdm light
- mail WB:
Hallo,
ich habe mir von der Ausgabeseite noch mal die Sache mit dem Typus-Textfeld angesehen. Ich denke,... - 12:02 PM feature request #8298 (Duplicate): Check for E+M Reference number being unique
- ERS:
Ein Hinweis: diese Nummer wird ja anscheinend als Freitext angelegt, es ist also jetzt möglich, Nummern doppe... - 11:53 AM bug #8297 (Closed): Fix condensed distribution string for E+M
- for previous rules and discussions see also #3907 and other related tickets.
http://portal.cybertaxonomy.org/eurom... - 11:33 AM feature request #8294: Make display of ID in source and ID Namespace configurable
- When fixing please also rename predicate NameInSource. It should be IdNamespace. Also we may rename the predicate in ...
- 11:31 AM feature request #8294: Make display of ID in source and ID Namespace configurable
- The current implementation does not seem to work. I tried with
![](picture299-1.png)
but still got both Id in ... - 11:14 AM feature request #8294 (Feedback): Make display of ID in source and ID Namespace configurable
- This issue is already mentioned in #7793 and it seems to be fixed (but maybe not yet available in Admin UI).
- 11:09 AM task #8262 (Resolved): Handle language area Wales correctly
- we now have a separate Common Name area vocabulary. Therefore this ticket should be fixed.
- 11:07 AM bug #8260 (Resolved): Details and Supplemental Data View do not save the expansion state of sections
- Fixed with commit:taxeditor|8f555f2fc0e00f5b1a203a7db7b653da250332b8
- 10:33 AM feature request #8296 (New): Add supplemental data to new/edit dialogs
- Currently when editing a new or existing instance via the dialoges it is not possible to see or edit the supplemental...
- 07:42 AM bug #8252: reference ellypsis must not be applied to all reference types
- Since there are no more obvious problems with reference ellypsis we can close this issue, agreed?
05/22/2019
- 06:08 PM bug #8252: reference ellypsis must not be applied to all reference types
- ![](picture461-2.png)
six section nomenclatural authors
three authors "et al." displayed. This should be acceptable... - 08:49 AM bug #8252 (Resolved): reference ellypsis must not be applied to all reference types
- The improvement is implemented, please review once the test server is updated.
- 01:00 PM feature request #8295 (New): Show the synonyms of a taxon in "Name in Source" selection dialog when opening
- Normally the name in source is already in the synonymy of a taxon, so it would be nice to show the names of the synon...
- 12:57 PM feature request #8294 (Closed): Make display of ID in source and ID Namespace configurable
- The display of ID in Source and ID Namespace should be configurable, the preference predicates are available already ...
- 12:46 PM feature request #8293 (Feedback): Distribution preferences for details view should be serverside preferences
- the preferences for distribution data (areas and status) used in details view should be serverside preferences
- 12:38 PM bug #8292: saving text with special characters throws exception
- for the text throwing the exception see the attachment. (putting it in the description of the ticket throws an except...
- 12:35 PM bug #8292 (New): saving text with special characters throws exception
- Saving a text with special characters throws exception:
~~~ text
login : s.vonmering
editor version : 5.7.2
ser... - 12:21 PM bug #8291 (New): saving text with special characters throws exception
- 08:33 AM feature request #8289 (Closed): Add "Open in RefObj view" to term editor context menu
05/21/2019
- 10:12 PM feature request #8286 (Resolved): Add cm as unit term to CDM
- added to cdmlib too. Please review.
- 10:07 PM feature request #8286: Add cm as unit term to CDM
- See additivity_ontology for uuid and labels.
950c5919-53e4-47ab-9efd-0ea86daa98ca
centimeter
cm
- 07:30 PM feature request #8288 (New): Use plural for e.g. Common Name feature in dataportal
- If a plural exists we may think about using the plural for a feature in dataportal.
For details see #8147 - 11:59 AM discussion #6678 (Feedback): [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
- please answer to the questions in comment 3
- 11:55 AM bug #8252 (In Progress): reference ellypsis must not be applied to all reference types
- During a phone call today we decided to give the following solution a try:
1. The section author team will be trun... - 08:20 AM feature request #5855 (Closed): potential improvements in settings for name relationship types
- i am closing this issue now, please reopen I if you feel like you want to review this.
- 08:13 AM feature request #5855 (Resolved): potential improvements in settings for name relationship types
- Applied in changeset commit:cdm-dataportal|cd4f8f20a3ebe850407af662a1f3295bd2b3c488.
05/20/2019
- 06:28 PM feature request #7975: Implement a block to display name relations
- This is rather a request for a new feature than an improvement for the existing implementation which creates an inlin...
- 04:41 PM task #5856 (Feedback): [DISCUSS] Consider implemeting additional name relationships
- Is this still relevant or will the original spelling relation be removed anyway in turn of solving #3967?
- 04:26 PM discussion #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
- I am having two questions regarding the ticket description:
> Maybe it is even enough to only show "orth. var." ... - 03:14 PM bug #5774 (Closed): cdmserver misses to detect some errors in failed instances
- It occurred again in the demo1 server.
Problem fixed.
Since it is quite time consuming to do do all the testing... - 03:11 PM bug #5774 (Resolved): cdmserver misses to detect some errors in failed instances
- Applied in changeset commit:cdm-server|0d7b39c76dff44342ce55bf721168a6974fccdab.
- 03:10 PM bug #5774 (In Progress): cdmserver misses to detect some errors in failed instances
- 01:16 PM feature request #8284 (Resolved): starting a registration for an existing name causes the name editor to pop up in read only mode
- Vorschlag übernommen für beide Fälle. Dann können wir dieses Ticket schließen?
- 12:59 PM feature request #7966: Registration search simplify type select options
- @Henning: please review
- 12:58 PM feature request #7966: Registration search simplify type select options
- This issue is solved, however there is a problem in the service method driving the search (#8287) due to which the op...
- 12:37 PM feature request #7966 (Resolved): Registration search simplify type select options
- Applied in changeset commit:cdm-dataportal|84ec1c1b58a6d4667402a3f456f90e76c92ad5c5.
- 12:56 PM bug #8287 (Closed): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
- In case the collection of typeDesignationStatusUuids contains both, a `null` value and UUIDs the request fails.
Th... - 12:33 PM feature request #7610 (Duplicate): Type search in PhycoBank Portal
- Ok to close this as duplicate given by henning in #7965#note-11 implicitely
- 10:40 AM feature request #8286 (Closed): Add cm as unit term to CDM
- We may also add cm only to the additivity production DB
05/19/2019
- 11:08 PM bug #6938 (Resolved): Tasks before a new Euro+Med import
- should be resolved, I did run all the steps (1 mail to ERS is still open, about corrupt hierarchies for Polygonum etc.)
- 09:43 PM task #7369 (Resolved): Handle taxonomically valueless taxa correctly
- The taxa are now all exported to a common root taxon "Valueless". They can be moved somewhere else after import if ne...
- 09:43 PM feature request #8285 (New): Handle taxonomically valueless taxa in data portal
- for details see #7369#note-15
relevant taxa are currently marked with marker "taxonomically valueless"
![](clip...
05/18/2019
- 08:08 AM feature request #7790: [DISCUSS] E+M: Language-Area Mapping
- Maybe it is an overload. In TaxEditor it can be handled by showing those areas that have been used already for the gi...
- 07:51 AM feature request #8281: Doubtful flag for TaxonNode
- ERS:
ich sehe das genauso wie du. "Unplaced" taxa sind gar nicht hierarchisch eingeordnet, während provisional bed... - 07:49 AM bug #7786 (Resolved): ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- ERS:
dies sind vermutlich alles Tippfehler. Doppelte Leerzeichen zwischen den Referenznummern in den Greuter-Table... - 07:48 AM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- most of them seem to be errors, especially those having no number at all. Others can not be resolved.
05/17/2019
- 04:13 PM bug #8278 (Resolved): LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator
- most probably fixed - please close if the LIE no longer occurs.
- 04:11 PM feature request #7965 (Closed): Registration search simplify type select options
- 04:07 PM feature request #7965: Registration search simplify type select options
- okay
- 04:05 PM feature request #7965: Registration search simplify type select options
- NPE fixed by commit:cdm-vaadin|5fd9990b
So I will close this ticket now.
#7966 will be implemented in according... - 03:40 PM feature request #7965: Registration search simplify type select options
- no further problems:
merge of entries without accidents:
Lectotype = merge of lectotype (name) of genus
and
Lec... - 03:34 PM feature request #7965: Registration search simplify type select options
- Hallo Andreas,
bin in Test List Type Status,
wenn ich dort -none- auswähle, bekomme ich :
~~~
java.lang.NullP... - 03:31 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- beide Versionen sind streng genommen suboptimal:
statt Click on "Save" to proceed with entering the typifications ... - 03:26 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Im anderen Fall, nom-ref fehlt, lautet der letzte Satz: '*Click on "Save" to proceed with entering the typifications ...
- 03:18 PM feature request #8284 (In Progress): starting a registration for an existing name causes the name editor to pop up in read only mode
- Ok, verstanden!!!!
Dann ändere ich den Text so wie du es vorgeschlagen hast. - 03:00 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Nein, nur mit Save wird der Name in den Workingset gestellt. Nur von dort aus kann selektiert werden, ob name oder sp...
- 02:56 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- > Click "Save" to start a type designation
verstehe ich das richtig? Der Dialog zur Auswahl der Type-Designation s... - 02:40 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Also alles so lassen, außer:
statt:
Click "Save" to proceed
Click "Save" to start a type designation
Wäre das ... - 02:35 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Wenn die Referenz fehlt kann nur diese und das Citation-Detail bearbeitet werden, dann speichert "Save" auch die Ände...
- 02:21 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- Wir hatten den Name editor eingebaut, weil wir Namen ohne Referenzen haben, die erst mal eingegeben werden müssen. Wi...
- 02:11 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- At the bottom of the editor an notification is shown for the user:
![](picture130-1.png)
Can we improve this te... - 02:01 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
- This is only a question of usability.
When I closed the name editor with save-button, the name was put into the work... - 01:57 PM feature request #8284 (Feedback): starting a registration for an existing name causes the name editor to pop up in read only mode
- it is always the name editor that pops up. This way the user can review the name before actually creating the registr...
- 01:50 PM feature request #8284 (Closed): starting a registration for an existing name causes the name editor to pop up in read only mode
- Registered name selected, double click on "registration for an existing name"
Result: the (read-only) name editor po... - 03:22 PM feature request #7610 (Feedback): Type search in PhycoBank Portal
- Shall we close this ticket in favor of implementing #7966 which suggests a different solution which is exactly the sa...
- 02:47 PM bug #8279 (Closed): ClassCastException in CdmUserHelper.user()
- 02:46 PM bug #8279 (Resolved): ClassCastException in CdmUserHelper.user()
- Applied in changeset commit:cdmlib|b7723abf3053f0e9be6dae43c191048aa67729da.
- 01:58 PM bug #8252: reference ellypsis must not be applied to all reference types
not realy, people do not know alle given names.
How I could differentiat between D.M. (= Ditmar Metzeltin) and D.M...- 01:53 PM bug #8252: reference ellypsis must not be applied to all reference types
- Would using the acronyms or truncating the names of the section authors to acronyms be helpful?
e.g.:
* Kulikowsy... - 10:56 AM bug #8229: reload of the bulkeditor does not work correctly
- The problem was that changes made in name editor did not appear in bulk editor after a new search.
This is a follo... - 06:52 AM bug #8229 (Feedback): reload of the bulkeditor does not work correctly
- I am not sure what to test here. Do you have a step by step explanation of what did not work before?
- 08:36 AM feature request #8283 (Resolved): Allow adding media to terms in taxeditor
- Applied in changeset commit:taxeditor|d418413628bd797221e1c9101ec57af041f1dab5.
- 08:31 AM feature request #8283 (Closed): Allow adding media to terms in taxeditor
- This could be done in the details view for example
05/16/2019
- 04:53 PM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
- TaxonNode will have a doubtful flag (#8281). We need to implement this in TaxEditor, too.
Important is that the la... - 04:51 PM bug #8280 (Closed): polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder
- 03:57 PM bug #8280 (Resolved): polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder
- Applied in changeset commit:cdm-dataportal|55a557d83c8145f8fcd3192f02001d2a9adb8b9c.
- 03:55 PM bug #8280 (Closed): polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder
- In the http://cichorieae.e-taxonomy.net/portal/admin/appearance/settings/zen_dataportal the polyfills folder check re...
- 04:41 PM feature request #8281 (In Progress): Doubtful flag for TaxonNode
- 04:33 PM feature request #8281: Doubtful flag for TaxonNode
- Hallo Eckhard,
folgende Taraxacum Taxa haben alle in der Beziehung zu ihrem Parent ein „provisional“ Flag gesetzt.... - 04:33 PM feature request #8281 (Closed): Doubtful flag for TaxonNode
- DISCUSS: Is this the same as the "unplaced" flag?
ERS:
dies bedeutet in allen Fällen, dass die Editoren sich ni... - 04:08 PM task #7448: Replace auct. reference
- we will do all MAN cleanup after migration
- 04:01 PM bug #7447 (Resolved): ERS: Fix misapplied name issues for E+M common names.
- 03:19 PM task #7435: Handle also published in correctly
- Before closing this ticket we still need to clean remaining note fields.
Also we need to check how this is shown i... - 03:07 PM bug #8252: reference ellypsis must not be applied to all reference types
- For a pragmatic approach (as of 16 May 2019):
Currently: only 20% authors can be recognized. That means that each ne... - 01:33 PM bug #8252: reference ellypsis must not be applied to all reference types
- Wolf-Henning Kusber wrote:
> Ellipsis must not be applied to in-authors/nomenclatural author team.
> Example:
> ... - 02:46 PM bug #7896 (Closed): NPE, NullPointerException in RelationshipTermBase
- It's fixed since http://api.cybertaxonomy.org/flora-malesiana/portal/taxon/09d427ff-a520-413e-b86b-e39abac29f52/synon...
- 02:38 PM bug #7953: Book in BookSeries: incomplete titleCache misses series title
- Hi Andreas this is your turn. Please see Hennings answer in comment !#10
- 02:36 PM feature request #8193 (Closed): TaxonNamePopupEditor: add select form element for Nomenclatural status
- I don't have this little grey box in my status bar while typing. I think we should just ignore this little artifact a...
- 02:20 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- Hi Henning
i could not reproduce the problem that
> Genera imported for the taxon graph AND species eintered i... - 02:11 PM bug #7881 (Closed): reference selection combobox broken after error in ...
- the cascade="all-delete-orphan" problems did not occur again
- 02:10 PM bug #8099 (Closed): Error saving name type designation editor due to problem in poupeditor context
- the problem which augments other exceptions has been fixed, since further information on the root cause has been lost...
- 02:01 PM bug #8160 (Closed): CdmBeanItemContainerFactory as readonly service bean
- The implementation works as expected and the cascade="all-delete-orphan" problems did not occur again
- 02:01 PM bug #8065 (Closed): HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table
- The implementation works as expected and the cascade="all-delete-orphan" problems did not occur again
- 02:00 PM bug #8075 (Closed): multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations
- the cascade="all-delete-orphan" problems did not occur again
- 01:59 PM bug #8158 (Closed): cascade="all-delete-orphan" problem when ....
- the cascade="all-delete-orphan" problems did not occur again
- 01:48 PM bug #8279 (Closed): ClassCastException in CdmUserHelper.user()
- found in the server log:
~~~
com.vaadin.server.ServerRpcManager$RpcInvocationException: Unable to invoke method c... - 01:45 PM bug #8278 (Closed): LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator
- found in the server log
~~~
[phycobank] 2019-05-07 15:37:04,623 ERROR [qtp1207140081-35] [com.flowingcode.vaadin.... - 12:55 PM bug #8277 (Duplicate): Username (and other fields) should allow c&p
- das Feld username im User Details View, sollte lediglich schreibgeschützt sein. Kopieren sollte noch möglich sein für...
- 11:35 AM bug #8189: Allow configuration of 'user.home' via the spring environment
- > The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows systems when running in maven
... - 10:11 AM bug #7823 (Resolved): User Persons are not deduplicated
- fixed
05/15/2019
- 10:48 AM feature request #8135 (In Progress): Implement verbatim type information in TaxEditor
- 10:42 AM feature request #8248 (In Progress): Implement OWL import
- 09:55 AM bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes
- We should fix this, because the preference page is empty at the moment
- 09:17 AM feature request #8276 (New): [DISCUSS] References need bibliographicAuthorCache
- The wanted bibliographic citation for an author may differ from the standard citation. Therefore we may need a cache ...
- 08:06 AM feature request #6774 (In Progress): Implement OWL export
05/14/2019
- 01:47 PM feature request #8257 (Feedback): Remove factory methods for term node creation
- @Andreas M.: Can you please have look at the last remaining factory method which is used in one last spot:
~~~java... - 12:26 PM feature request #8046 (Rejected): Term lists in term manager should be positiv lists
- the term list are already positiv lists.
- 12:01 PM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- All invalid names (term ids may need to be adapted)
~~~
SELECT ns.type_id, ns.citation_id, n.nameCache, n.titleCa... - 11:45 AM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- We do not have any invalid designation relationships in E+M (BM):
~~~
SELECT *
FROM RelPTaxon rel
WHERE RelQu... - 11:43 AM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- ERS (2018-03-28):
Dear all,
to facilitate the discussion about the status "invalid designation", I am continuin... - 11:36 AM task #8275 (Worksforme): [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
- Is this the same?
In BM dataportal version of E+M it looks like ALL nom. inval. are shown as inval. desig.:
![...
05/13/2019
- 03:58 PM bug #8189 (Feedback): Allow configuration of 'user.home' via the spring environment
- The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows systems when running in maven (no...
- 02:38 PM bug #8229 (Resolved): reload of the bulkeditor does not work correctly
- 10:20 AM bug #8229: reload of the bulkeditor does not work correctly
- the reload works for changes of the name itself, but the descriptions are not loaded again.
- 02:20 PM feature request #4011: disallow changing publish flag for users with unsuffcient rights
- Check if this is still an open issue
- 02:06 PM feature request #7799 (Resolved): AM: Parse authorteams
- This should be fixed. We may check for not atomized authors after import again
- 01:55 PM task #7816: Handle nomStatus references correctly
- We will decide this only after migration
- 12:49 PM task #7436: Handling verbatimDate in E+M import
- A lot of work has been done already. The final work on notes (and similar) we will do after the import.
- 11:30 AM bug #8274 (In Progress): Very large taxa (synonymies) can not be handled by the dataportal
- copied from #1985
for more information see there.
Example taxon: Hieracium murorum species group (http://test.... - 09:53 AM feature request #8264: excluded and excluded notes in cdmlight export
- Hallo,
ja, da hatte ich noch nicht an die Synonyme gedacht (die ja auch in Taxon Nodes nicht auftauchen würden). Vie...
05/12/2019
- 12:52 PM task #7713: Atomize last scrutiny references
- we will do this after migration
- 12:50 PM task #7796 (Resolved): [CHECK] Handle Bibliography Name Facts correctly
- As in note 11 it was decided not to import them at all this ticket is fixed (in code this is already implemented)
- 11:21 AM task #7796: [CHECK] Handle Bibliography Name Facts correctly
- Move to check if they are really not shown in production portal.
- 11:15 AM bug #7828: Remove date published from journals in E+M
- This is generally solved. I final check should be done after import. (currently the 2 above issues are still open)
- 11:14 AM bug #7828: Remove date published from journals in E+M
- AM:
folgende 2 Journals haben noch ein Datum, was eigentlich nicht sein soll (der Artikel soll das Datum haben):
... - 10:43 AM feature request #3990 (Resolved): [DISCUSS] How to implement citation suggestion to each taxon
- The discussion is finished. We may check after migration if everything looks like expected and what still needs to be...
- 10:40 AM bug #3992 (Resolved): [CHECK] Use last scrutiny instead of sec reference
- Generally this worked. Special cases will be handled in separate tickets.
After import we will need to check all t... - 07:19 AM bug #7075 (In Progress): Excel import for images
05/10/2019
- 01:15 PM task #7319 (Resolved): [CHECK] Import synonyms correctly in E+M
- This seems to be fixed. There are only pro parte/partial synonyms left in the candidates list. And they seem to be ha...
- 01:05 PM feature request #8273 (Feedback): abcd import: check for all specimen for DNA in DNABank
- To get the dna for a specimen check the dnaBank with following path:
~~~
<like path='/DataSets/DataSet/Units/Unit... - 12:49 PM task #7341 (Resolved): [Check] CommonName import issues
- This is generally solved. We may want to check a last time after import if facts and atomized common names are fully ...
- 12:45 PM task #7346 (Resolved): [CHECK] Use separate area vocabulary for common names
- This is generally solved. We only need to discuss how "Wales" should be handled as it is the only area which does not...
- 12:32 PM task #8272 (New): Add includedIn relations to E+M areas
- this can be done only after terms have been refactored.
SOme ideas can be found in description of #7346. - 12:02 PM bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies
- This generally should not be possible!!
An OrderedTerm must NEVER be moved to an unordered vocabulary. AND currently... - 10:31 AM feature request #8264 (Resolved): excluded and excluded notes in cdmlight export
- Applied in changeset commit:cdmlib|82e89bf1fa44953ae1f9f162948b49cb0f385150.
- 09:44 AM feature request #7433 (Resolved): new service method to get specimen by genetic AccessionNumber
05/09/2019
- 03:22 PM bug #8271 (Duplicate): Format for aggregates with author and nom. ref. correctly
- 03:18 PM bug #8271 (Duplicate): Format for aggregates with author and nom. ref. correctly
- maybe there is somewhere a similar ticket.
ERS (2014):
wenn Autoren und nom.refs bei rank=aggregate vorhanden s... - 01:12 PM bug #8270 (New): TermDTOs with an orderIndex are ordered in unordered term vocabularies
- To reproduce this behavior:
1. Open the term editor for states.
1. Move a term to the "State" vocabulary (Must be... - 09:58 AM feature request #8269 (New): check all parts of the editor whether it handles the expand correct
- We should have a look on the whole application where the state of the part is saved and where not.
There are loca... - 09:13 AM feature request #8268 (New): Add term count to term vocabularies in term editor
- The term count could be shown in the label of the vocabulary like `<voc_name> (count)`
05/08/2019
- 05:24 PM bug #8266 (Closed): local preference is not evaluated for distribution editor status
- Tested on nightly: changed common name preferences, saved, re-connected, preference changes were saved
- 02:08 PM bug #8266 (Resolved): local preference is not evaluated for distribution editor status
- 01:12 PM bug #8266 (Closed): local preference is not evaluated for distribution editor status
- mail NK:
Hallo,
irgendwie scheint es einen neuen(?) bug zu geben: Ich kann die local preferences für zur Auswah... - 05:21 PM bug #8267 (Closed): common name preference saving does not work correctly
- Tested on nightly: changed common name preferences, saved, re-connected, preference changes were saved
- 02:03 PM bug #8267 (Resolved): common name preference saving does not work correctly
- please review
- 01:22 PM bug #8267 (Closed): common name preference saving does not work correctly
- mail AM:
Hallo Katja,
wie es scheint lässt sich die Präferenz der CommonNames, wenn sie einmal gesetzt ist nich... - 05:19 PM bug #8258 (Closed): Default Feature Tree contains name features and features
- tested on nightly. Name features do not appear for taxon descriptions and vica versa
- 02:06 PM bug #8258: Default Feature Tree contains name features and features
- please review
- 05:18 PM feature request #8263: Improve performance of term editor
- For testing the performance try cdm_production_additivity_ontology on the test server
- 05:00 PM feature request #8263 (Resolved): Improve performance of term editor
- For review just try out every operation: delete, create, move
Known issue: When creating a new term or vocabulary ... - 05:16 PM bug #8265 (Closed): Referencing objects view does not work for term editor
- tested on nightly. Works fine
- 02:04 PM bug #8265 (Resolved): Referencing objects view does not work for term editor
- please review
- 01:10 PM bug #8265 (Closed): Referencing objects view does not work for term editor
- mail AM:
Hallo,
kann es sein, dass der Referencing Objects View für Terme gerade gar nicht mehr funktoniert? Ic... - 12:54 PM feature request #8264 (Closed): excluded and excluded notes in cdmlight export
- mail WB:
Hallo Katja,
dumm, dass ich das nicht vor dem Release gefragt habe:
Können wir die Excluded Flag sowie... - 11:19 AM bug #8129: Load images asynchronously in media details view
- Also check #1072 before implementation
05/07/2019
- 06:16 PM bug #8252: reference ellypsis must not be applied to all reference types
- ![](picture017-1.png)
Ellipsis must not be applied to in-authors/nomenclatural author team.
Example:
How to corr... - 04:25 PM feature request #8263 (Resolved): Improve performance of term editor
- A good test for performance issue is the term editor for stats in DB cdm_production_additivity_ontology which has 900...
- 03:32 PM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
- For SupplementalData the preference for expansion state was not evaluated, this is fixed with revision 544be2e6d53d1b...
- 11:26 AM bug #8260 (Closed): Details and Supplemental Data View do not save the expansion state of sections
- This is a regression as it worked before. This may have to do with the revamp of the preferences in general.
- 01:24 PM bug #8259 (Duplicate): Focus of bulkeditor is not set as selection for newly opened referencing objects view
- 11:09 AM bug #8259 (Duplicate): Focus of bulkeditor is not set as selection for newly opened referencing objects view
- mail von AM:
Öffnen in RefObjects im Bulk Editor
… funktioniert nicht richtig. Sowohl der Details View als auch... - 01:21 PM task #8262 (Resolved): Handle language area Wales correctly
- Currently it is the only area in "User defined areas" as it is not in the emArea map. Need to check what happens if w...
- 01:13 PM bug #8261 (New): Referencing objects view is missing focus after opening
- AM: "Öffnen in RefObjects im Bulk Editor funktioniert nicht richtig. Sowohl der Details View als auch der neu geöffne...
- 12:13 PM feature request #8257 (Resolved): Remove factory methods for term node creation
- Applied in changeset commit:cdmlib|48e5bbde635e7d2fd347cf5c2eef0d103c3699db.
- 09:49 AM bug #8258 (Resolved): Default Feature Tree contains name features and features
- Applied in changeset commit:taxeditor|9814168df618526a6f23ea9c38a0ad9391ffc245.
- 09:41 AM bug #8258 (Closed): Default Feature Tree contains name features and features
- The default feature tree should contain only features not belonging to the nameFeature Vocabulary.
05/06/2019
- 07:36 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
- a minor issue: typing in status data, e.g. Article, a small grey area is shown on the status bar (in my browser)
- 07:33 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
- Tested 2019-05-06:
1. Labeles okay, too much entries but this can be solved later
2. Test system has again full f... - 06:51 PM feature request #7797: Second nomenclatural reference
- ERS:
"an jam" drückt Zweifel aus, ob die genannte Referenz sich auf denselben Namen bezieht oder nicht
"emend." b... - 03:35 PM feature request #8257 (In Progress): Remove factory methods for term node creation
- 03:35 PM feature request #8257 (Closed): Remove factory methods for term node creation
- Currently it is possible to create a `FeatureNode` on its own, e.g. with a given term
~~~java
public static <T e... - 12:23 PM feature request #8256 (Feedback): Show all status preferences as table
- The table/list should show all entries for the given predicate with different subject (e.g. /, /taxeditor, /NamedArea...
05/03/2019
- 04:50 PM feature request #8182 (In Progress): show blast search result
- 04:38 PM feature request #8242 (Resolved): Implement filtered combo boxes for state selection in CharacterMatrix
- move to 5.8 because still experimental
- 04:22 PM feature request #8242 (Feedback): Implement filtered combo boxes for state selection in CharacterMatrix
- As this is still experimental I think it is not necessary to review. I will review once the character matrix becomes ...
- 10:27 AM feature request #8242 (Resolved): Implement filtered combo boxes for state selection in CharacterMatrix
- 04:34 PM feature request #8241 (Closed): Rename FeatureTreeEditor to TermTreeEditor
- 04:07 PM feature request #8241 (Feedback): Rename FeatureTreeEditor to TermTreeEditor
- hmm, this doesn't make so much sense as long as in standard version only feature trees can be edited. However, as it ...
- 11:07 AM feature request #8241 (Resolved): Rename FeatureTreeEditor to TermTreeEditor
- 12:04 PM bug #7223 (Feedback): ReferenceEditor: disable fields depending on the Reference type
- Personal Communication has no DOI neither in the interfaces nor in TaxEditor. If this is available in vaadin this is ...
- 11:40 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
- "And I guess also for personal communication no DOI should be available." correct.
- 12:03 PM feature request #8255 (New): Unify ReferencePropertyDefinitions and reference interfaces
- For details see https://dev.e-taxonomy.eu/redmine/issues/7223#note-28 and before.
To avoid inconsistent behavior w... - 11:41 AM bug #8254 (New): Add term information to state dropdown in CharacterMatrix
- Copied from #8242:
Additionally, we should think about adding tooltips with the description (and also image) of th... - 11:40 AM feature request #8248: Implement OWL import
- Moving to 5.8 because still experimental
- 10:29 AM feature request #8248 (Resolved): Implement OWL import
- 11:37 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title
- Correct: "Iconographia Diatomologica. 23" is absolutely necessary to identify the book. For my understanding the "pr...
- 11:30 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title
- By the way, this part of the description to me seems incorrect: Expected titleCache is: "Taxonomy - biogeography - di...
- 11:28 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title
- As described in https://dev.e-taxonomy.eu/redmine/issues/7223#note-19 the print series is meant only for grouping not...
- 10:25 AM bug #7896: NPE, NullPointerException in RelationshipTermBase
- This belongs to 5.6 if fixed, otherwise should be set to Feedback. Please review.
05/02/2019
- 01:55 PM feature request #8253 (Closed): Authors for genus autonyms
- ERS:
den Autor bei infragenerischen Taxa hinter den gesamten Namen zu stellen, wie jetzt in Euro+Med, ist mit Sich...
05/01/2019
- 07:24 PM bug #8252: reference ellypsis must not be applied to all reference types
- "It is also possible to skip the ellipsis completely in this case some titles could exceed the given space, though.
...
04/30/2019
- 11:12 PM bug #8252 (Feedback): reference ellypsis must not be applied to all reference types
- > All Titles are given fully up to a length of approx. 60 characters.
>
> This is okay (i) because the the title ca... - 09:05 PM bug #8252: reference ellypsis must not be applied to all reference types
- All Titles are given fully up to a length of approx. 60 characters.
This is okay (i) because the the title can be ... - 07:53 PM bug #8252 (Resolved): reference ellypsis must not be applied to all reference types
- done! please review.
- 03:22 PM bug #8252: reference ellypsis must not be applied to all reference types
- reference title cache ellypsis must not be applied to:
Book series
Journal
Proceedings
i.e. all standardised inv... - 03:13 PM bug #8252: reference ellypsis must not be applied to all reference types
- I think the same accounts for book series etc.
the reference title cache ellypsis must not be applied to all refer... - 03:09 PM bug #8252 (Closed): reference ellypsis must not be applied to all reference types
- ![](picture551-1.png)
Journal titles in dropdown list in reference editor must not be truncated.
How to different... - 11:10 PM bug #8250 (Closed): ReferenceEditor: inReference must not be required for type book
- 09:12 PM bug #8250: ReferenceEditor: inReference must not be required for type book
- The bug is fixed, input of books with and without series can be done and saved.
This ticket can be closed.
That... - 03:30 PM bug #8250: ReferenceEditor: inReference must not be required for type book
- please review
- 03:30 PM bug #8250 (Resolved): ReferenceEditor: inReference must not be required for type book
- Applied in changeset commit:cdm-vaadin|80e7f7818a45beba837dadf4ef75837053efe2f0.
- 11:09 PM bug #8251 (Closed): LazyInitializationException (LIE) in featureTree webservice
- works now as expected
- 12:41 PM bug #8251: LazyInitializationException (LIE) in featureTree webservice
- please review
- 12:40 PM bug #8251 (Resolved): LazyInitializationException (LIE) in featureTree webservice
- Applied in changeset commit:cdmlib|7d02ee2f5d18a659ae3baf758b8a6010af5004d5.
- 12:38 PM bug #8251 (In Progress): LazyInitializationException (LIE) in featureTree webservice
- 12:37 PM bug #8251: LazyInitializationException (LIE) in featureTree webservice
- I think I found the problem and can fix it
- 11:33 AM bug #8251 (Closed): LazyInitializationException (LIE) in featureTree webservice
- example request : http://api.cybertaxonomy.org/cichorieae/portal/featureTree.json?pageNumber=0&pageSize=500
- 08:44 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
- Thanks for the implementation
Tested with one and two status, entering and saving without problems, fine.
...but i... - 07:53 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
- ready to be reviewed.
- 03:06 PM feature request #8193 (Resolved): TaxonNamePopupEditor: add select form element for Nomenclatural status
- Applied in changeset commit:cdm-vaadin|0aa1233b1d58610d498e17aeb13858211d09d49b.
- 07:54 PM bug #8220 (Closed): incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
- 03:06 PM bug #8220: incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
- All issues are solved.
New issue seen: truncation of journal titles -> new ticket. - 09:03 AM bug #8220: incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
- I solved all remaining issues, please review again.
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