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From 04/29/2019 to 05/28/2019

05/28/2019

10:15 PM bug #6523: Correct display of misspellings in synonymy
Andreas Kohlbecker wrote:
> sollen misspellings überhaupt in der form "non ... nec ..." dargestellt werden?
würde...
Andreas Müller
05:51 PM Revision e80ee826 (cdmlib): ref #8248 Adapt test to import
Patrick Plitzner
05:50 PM Revision d48d26c0 (cdmlib): ref #8248 Set UUID during import
Patrick Plitzner
05:31 PM feature request #8314 (Closed): TaxonName provides the FullTitleCache as TaggedText
In order to display the nomenclatural status in the DataPortal name page, etc it is required to obtain the tagged ful... Andreas Kohlbecker
03:02 PM Revision 0e6c3b12 (cdmlib): ref #6774 Adapt test to export format
Patrick Plitzner
02:58 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
If a cell has mutliple categorical data values and you click on it, the data is completely deleted. This does not hap... Patrick Plitzner
02:44 PM feature request #7714 (Rejected): PhycoBank UI Restrictions for reference types
this is avoided to some extend, but we will not enforce this further Andreas Kohlbecker
02:41 PM bug #7959 (Rejected): LazyCombobox popup over sizing problem
solved by implementing the reference ellypsis Andreas Kohlbecker
02:39 PM feature request #7654 (Duplicate): New registration page existing publications combobox does 'begins with search' on author names
this has been solved in another ticket Andreas Kohlbecker
02:38 PM bug #6629: TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
maybe also an euro+med issue (for similar problems) Andreas Müller
02:38 PM task #7497 (Rejected): Dokument and add guides and hints to the UI
in the ui the genus and species widgets show a warning and offer a new button at the same time, this should be suffic... Andreas Kohlbecker
02:33 PM bug #8312 (Closed): Test, fix, improve and run Transmission engine for E+M
copied from #3979
===
-run the TransmissionEngineDistribution-:
./description/accumulateDistributions?mode=[...
Andreas Müller
02:28 PM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
Generally implemented for dialogs needed in euro+med.
Still needs check for open issues/other dialogs and for not e...
Andreas Müller
02:27 PM bug #8167: Permission denied for Submitter when adding section to newly created journal
please test if this is still relevant Andreas Kohlbecker
02:17 PM feature request #8196 (In Progress): display ortographic corrections in name relations as 'corrected name: <nameCache>'
this needs to be done in the dbs Andreas Kohlbecker
02:16 PM bug #8311 (New): fix creation of geo webservice string for multi-area mappings with different fields
copied from #5175#note-7 for description see there Andreas Müller
02:13 PM bug #8231: Name relation non
After fixing the data issue the ticket can be closed as duplicate of #7975 Andreas Kohlbecker
02:11 PM bug #8310 (Closed): Issues to solve in E+M shapefile
* add Kosovo (Yu(K) or Ko) and Serbia (Se) as area (without parent information) see #3908#note-14 **DONE**
* add par...
Andreas Müller
02:07 PM feature request #7952 (Rejected): Registration page Maps display in PhycoBank portal
the registration page should only show compact type information. maps will only be shown on the name page Andreas Kohlbecker
01:55 PM bug #7884 (Duplicate): Replacement name not shown in Portal
Andreas Kohlbecker
01:52 PM task #7339 (Closed): activate clickable links for references in Phycobank Dataportal
no longer needed in this way, we display the reference to the publication at the bottom of the reg page, this is clic... Andreas Kohlbecker
01:52 PM feature request #8309 (New): Implement preferences with predicate and subject in local preferences
Actually the preference store for the local preferences is a flat list of preferences without the possibility to defi... Katja Luther
01:46 PM bug #8018 (Worksforme): Registration page: scientific names in the citation to be shown in italics
Andreas Kohlbecker
01:42 PM task #7296: externalize redmine api key
remove all these entries since the redmine communication system has been rejected Andreas Kohlbecker
01:18 PM feature request #8308 (Worksforme): Extend specimen type designation editor
The type list of the specimen type designation editor is still limited and should be extended by the following fields... Andreas Kohlbecker
01:03 PM bug #8114 (Duplicate): used author name cache in nomenclatural reference
already fixed and duplicate of another ticket Andreas Kohlbecker
12:53 PM feature request #8307 (New): display fossil in the context of the taxon name
display fossil in the context of the taxon name, in case the FOSSIL marker is set Andreas Kohlbecker
11:21 AM Revision 040bf76f (cdm-dataportal): fixing titlecache usage for name rel footnotes
Andreas Kohlbecker

05/27/2019

06:49 PM Revision d64f1d61 (cdm-dataportal): ref #8108 showing name relationships in the name page and full name below the title
Andreas Kohlbecker
06:17 PM feature request #8306: Registration page links to registered taxon name
done! Andreas Kohlbecker
06:17 PM feature request #8306 (Resolved): Registration page links to registered taxon name
Applied in changeset commit:cdm-dataportal|54c1080349223c28d6c37bc32020e7e107c7f178. Andreas Kohlbecker
05:55 PM feature request #8306 (Closed): Registration page links to registered taxon name
The registed name on the registration page should be a link and should be displayed in bold letters (name part only) Andreas Kohlbecker
06:17 PM Revision 54c10803 (cdm-dataportal): fix #8306 Registration page links to registered taxon name, name parts bold
Andreas Kohlbecker
06:00 PM Revision 57dabcba (cdm-dataportal): refactoring: moving compose functions to pages.inc
Andreas Kohlbecker
05:54 PM feature request #8304 (Resolved): Name page redirects to according taxon depending on query parameter
Applied in changeset commit:cdm-dataportal|2f65af049f9784cd0b0de8096df842491c590b31. Andreas Kohlbecker
05:54 PM Revision 2f65af04 (cdm-dataportal): fix #8304 redirect from name to taxon page depending on drupal path argument, with test
Andreas Kohlbecker
02:56 PM Revision bc545ed2 (cdmlib): fix tests for cdmlight
Katja Luther
02:14 PM Revision e53eb86e (cdmlib): fix preference service
Katja Luther
02:00 PM Revision e19057f2 (cdmlib): ref #8248, #6774 Fix bean names
Patrick Plitzner
12:49 PM Revision 4d025474 (cdmlib): ref #8045: add remove to preference service and dao
Katja Luther
12:28 PM Revision 63732a7c (taxeditor): ref #8045: further implementation for default/explicit value selection preference pages
Katja Luther
09:58 AM Revision c20ddc4e (cdmlib): ref #8248 Implement termvocabulary import
Patrick Plitzner
09:39 AM Revision 51c10665 (cdmlib): ref #6774 Set vocabulary for partOf and kindOf terms in export
Patrick Plitzner
09:38 AM feature request #8305 (New): show number of references in referencing objects view
mail AM:
es wäre schön, wenn wir, ähnlich wie bei der Warnung im Details View, im referenzing Obj. View noch die A...
Katja Luther
09:15 AM Revision 506eecd9 (cdmlib): ref #6774 Fix node hierarchy in export
Patrick Plitzner
09:11 AM Revision 6cbd3165 (cdmlib): ref #8248 Extract CDM entity creation to util
Patrick Plitzner

05/26/2019

05:55 PM feature request #8304 (Feedback): Name page redirects to according taxon depending on query parameter
As requested in #8108 the redirection behavior of the name page to the related taxon (if there is only one) should be... Andreas Kohlbecker
03:48 PM Revision c3a607ce (cdmlib): ref #8248, #6774 Extract model creation form import and export to util
Patrick Plitzner
03:30 PM Revision 2e0a90f1 (cdmlib): ref #8248 Move rdf model to import state
Patrick Plitzner
03:20 PM Revision 40be5878 (taxeditor): ref #6774 Use UUID for feature tree export
Patrick Plitzner
03:19 PM Revision 9db948f1 (cdmlib): ref #6774 Use UUID for feature tree export
Patrick Plitzner
02:21 PM Revision ed0cb955 (taxeditor): ref #6774 Fix export invocation
Patrick Plitzner

05/25/2019

09:47 AM bug #8303 (Resolved): Improve formatting for misapplied names in search results
Currently we get something like
"Cynosurus polybracteatus Poir., Voy. Barbarie 2: 97. 1789"
where you can't se...
Andreas Müller

05/24/2019

11:36 PM bug #6523 (Resolved): Correct display of misspellings in synonymy
Dies sollte nun soweit in Ordnung sein.
Es gibt jedoch noch offene Fragen:
1. Ist es richtig, dass die "is miss...
Andreas Kohlbecker
06:10 PM bug #6523 (Feedback): Correct display of misspellings in synonymy
sollen misspellings überhaupt in der form "non ... nec ..." dargestellt werden? Andreas Kohlbecker
11:06 PM Revision 7efd13a9 (cdm-dataportal): implementing misspelling for ref #6523; implementing name rel type filter for direct and inverse edges for #5855
Andreas Kohlbecker
07:10 PM bug #8252: reference ellypsis must not be applied to all reference types
Technically the problem is solved.
As far as we keep the "bibliographic authors" issue in mind, we can close this ...
Wolf-Henning Kusber
07:07 PM feature request #7975: Implement a block to display name relations
![](picture764-1.png)
1. the main issue is perfectly implemented, clear & correct wording
2. minor issue of the d...
Wolf-Henning Kusber
04:13 PM feature request #7975: Implement a block to display name relations
fully implemented an ready for review Andreas Kohlbecker
11:52 AM feature request #7975 (Resolved): Implement a block to display name relations
Applied in changeset commit:cdm-dataportal|ef686dd8e7c670f958e414ee6809803cc4807882. Andreas Kohlbecker
06:07 PM Revision 1636cc86 (cdm-dataportal): fixing regression ref #5697: including conserverd against in non ... nec ... , ref #4177 removing dom block from inline name rels
Andreas Kohlbecker
04:31 PM Revision 96614dfe (cdm-dataportal): ref #4177 test for improved and more consistet implementation of the inline representation of name relationships
Andreas Kohlbecker
04:12 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
one little bit is missing: we need to set the inverse label of the relationship term to "corrected name" in the datab... Andreas Kohlbecker
03:36 PM feature request #8196: display ortographic corrections in name relations as 'corrected name: <nameCache>'
completed, please review Andreas Kohlbecker
11:52 AM feature request #8196 (Resolved): display ortographic corrections in name relations as 'corrected name: <nameCache>'
Applied in changeset commit:cdm-dataportal|ef686dd8e7c670f958e414ee6809803cc4807882. Andreas Kohlbecker
03:52 PM Revision b465e8d2 (cdm-vaadin): bugfix related to initstrategy
Andreas Kohlbecker
03:40 PM discussion #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
since different projects may require different representation. See for example #7975 where "has orthographic variant"... Andreas Kohlbecker
02:23 PM Revision a7388a1d (cdmlib): ref #6774 Fix class cast exception
Patrick Plitzner
02:23 PM Revision 9298a53f (cdmlib): ref #6774 Add service method findVocabularyDtoByTermTypes()
Patrick Plitzner
02:22 PM Revision 4fceb02d (taxeditor): ref #6774 Implement isPageComplete()
Patrick Plitzner
01:59 PM Revision 86dde6da (cdmlib): ref #8209 modularization of reference init strategies - bug fix
Andreas Kohlbecker
01:46 PM Revision 974c7689 (taxeditor): ref #6774 Implement configuration wizard page of owl term export
Patrick Plitzner
11:52 AM Revision ef686dd8 (cdm-dataportal): fix #7975 fix #8196 name relationships list representation implemented
Andreas Kohlbecker
11:49 AM Revision 26e4e4de (cdmlib): ref #8209 modularization of reference init strategies
Andreas Kohlbecker
11:36 AM Revision 01ca9bae (cdmlib): ref #8209 modularization of reference init strategies and improving EntitiyInitStrategy class
Andreas Kohlbecker
11:22 AM Revision 1a2cb532 (cdm-vaadin): ref #8209 modularization of reference init strategies by using the EntitiyInitStrategy class
Andreas Kohlbecker
11:20 AM feature request #8302: Assure uniqueness of E+M reference number
ERS:
zur Nummernvergabe: jeder Editor hatte ursprünglich einen ausreichenden Slot von Nummern, die er konsekutiv ...
Andreas Müller
11:12 AM feature request #8302 (New): Assure uniqueness of E+M reference number
The E+M reference number is stored as (alternative) identifier in CDM. Alternative identifiers allow duplicates (e.g.... Andreas Müller
11:13 AM feature request #8298 (Duplicate): Check for E+M Reference number being unique
Andreas Müller
09:15 AM Revision 6f6f79f6 (cdm-dataportal): ref #8182: fix error ín cdm_dataportal_preprocess_menu_local_tasks()
Katja Luther
08:31 AM Revision e7e642ee (taxeditor): ref #6774 Implement feature tree comparator
Patrick Plitzner
08:29 AM Revision 398b6133 (taxeditor): ref #6774 Refactor CheckBoxTreeComposite layout
Patrick Plitzner

05/23/2019

04:22 PM task #8301 (New): Test family editor rights
... as defined for cichorieae in #3979 issue 4 Andreas Müller
04:14 PM feature request #8300 (New): Final adjustments for distribution status in E+M
(see also related tickets)
ein paar weitere Fragen zum Verbreitungsstatus:
**1. naturalised:**
soll in E+M ...
Andreas Müller
02:53 PM feature request #8299 (Closed): add typification column to scientific name and homotypical group in cdm light
mail WB:
Hallo,
ich habe mir von der Ausgabeseite noch mal die Sache mit dem Typus-Textfeld angesehen. Ich denke,...
Katja Luther
02:19 PM Revision 639ee6f2 (cdmlib): minor
Katja Luther
02:08 PM Revision 5ca1634c (cdmlib): fix sortindex in cdmlight export
Katja Luther
01:39 PM Revision 97e2d1bd (cdmlib): ref #6774 Refactor export class inheritance
Patrick Plitzner
01:39 PM Revision 20821e94 (cdmlib): ref #6774 Extract all resource creation to util class
Patrick Plitzner
01:39 PM Revision c2d94ebc (taxeditor): ref #6774 Initial implementation of OWL term export wizard
Patrick Plitzner
12:45 PM Revision 868be375 (cdm-dataportal): remove blast tab if blast is not enabled
Katja Luther
12:02 PM feature request #8298 (Duplicate): Check for E+M Reference number being unique
ERS:
Ein Hinweis: diese Nummer wird ja anscheinend als Freitext angelegt, es ist also jetzt möglich, Nummern doppe...
Andreas Müller
11:53 AM bug #8297 (Closed): Fix condensed distribution string for E+M
for previous rules and discussions see also #3907 and other related tickets.
http://portal.cybertaxonomy.org/eurom...
Andreas Müller
11:37 AM Revision 011c997b (cdmlib): adapt IdNamespace predicate a bit #8294
Andreas Müller
11:33 AM feature request #8294: Make display of ID in source and ID Namespace configurable
When fixing please also rename predicate NameInSource. It should be IdNamespace. Also we may rename the predicate in ... Andreas Müller
11:31 AM feature request #8294: Make display of ID in source and ID Namespace configurable
The current implementation does not seem to work. I tried with
![](picture299-1.png)
but still got both Id in ...
Andreas Müller
11:14 AM feature request #8294 (Feedback): Make display of ID in source and ID Namespace configurable
This issue is already mentioned in #7793 and it seems to be fixed (but maybe not yet available in Admin UI). Andreas Müller
11:09 AM task #8262 (Resolved): Handle language area Wales correctly
we now have a separate Common Name area vocabulary. Therefore this ticket should be fixed. Andreas Müller
11:07 AM bug #8260 (Resolved): Details and Supplemental Data View do not save the expansion state of sections
Fixed with commit:taxeditor|8f555f2fc0e00f5b1a203a7db7b653da250332b8 Patrick Plitzner
10:33 AM feature request #8296 (New): Add supplemental data to new/edit dialogs
Currently when editing a new or existing instance via the dialoges it is not possible to see or edit the supplemental... Andreas Müller
07:42 AM bug #8252: reference ellypsis must not be applied to all reference types
Since there are no more obvious problems with reference ellypsis we can close this issue, agreed? Andreas Kohlbecker

05/22/2019

06:08 PM bug #8252: reference ellypsis must not be applied to all reference types
![](picture461-2.png)
six section nomenclatural authors
three authors "et al." displayed. This should be acceptable...
Wolf-Henning Kusber
08:49 AM bug #8252 (Resolved): reference ellypsis must not be applied to all reference types
The improvement is implemented, please review once the test server is updated. Andreas Kohlbecker
05:06 PM Revision 2f30124c (cdm-dataportal): ref #8182 sloving problems with blast search menu items and renaming constants
Andreas Kohlbecker
03:04 PM Revision 8f555f2f (taxeditor): Fix expansion state preference for details and suppData view
Patrick Plitzner
02:38 PM Revision 0ca09004 (taxeditor): cleanup
Patrick Plitzner
01:58 PM Revision 66910558 (cdmlib): ref #6774 Bidirectional linking of terms and vocabularies
Patrick Plitzner
01:43 PM Revision e85bf0bc (cdmlib): ref #6774 Add util class for static methods
Patrick Plitzner
01:00 PM feature request #8295 (New): Show the synonyms of a taxon in "Name in Source" selection dialog when opening
Normally the name in source is already in the synonymy of a taxon, so it would be nice to show the names of the synon... Katja Luther
12:57 PM feature request #8294 (Closed): Make display of ID in source and ID Namespace configurable
The display of ID in Source and ID Namespace should be configurable, the preference predicates are available already ... Katja Luther
12:46 PM feature request #8293 (Feedback): Distribution preferences for details view should be serverside preferences
the preferences for distribution data (areas and status) used in details view should be serverside preferences Katja Luther
12:38 PM bug #8292: saving text with special characters throws exception
for the text throwing the exception see the attachment. (putting it in the description of the ticket throws an except... Katja Luther
12:35 PM bug #8292 (New): saving text with special characters throws exception
Saving a text with special characters throws exception:
~~~ text
login : s.vonmering
editor version : 5.7.2
ser...
Katja Luther
12:21 PM bug #8291 (New): saving text with special characters throws exception
Katja Luther
12:04 PM Revision cc00ba7d (taxeditor): Remove vocabulary from cache when its terms are edited
Patrick Plitzner
12:04 PM Revision e7e93e51 (cdmlib): Set vocabulary DTO when creating a term DTO
Patrick Plitzner
11:04 AM Revision 21eae050 (cdmlib): ref #6774 Refactor term tree export
- unify resource creation methods Patrick Plitzner
11:04 AM Revision 369ff802 (cdmlib): ref #6774 Implement term vocabulary OWL export (partially)
Patrick Plitzner
11:04 AM Revision 242542cb (cdmlib): ref #6774 Use term node uuid for node resource
Patrick Plitzner
08:47 AM Revision b25e560f (cdmlib): ref #8252 preserving section authors and better title compentation
Andreas Kohlbecker
08:33 AM feature request #8289 (Closed): Add "Open in RefObj view" to term editor context menu
Patrick Plitzner

05/21/2019

10:22 PM Revision a77d754b (cdmlib-apps): final changes to E+M import
Andreas Müller
10:15 PM Revision c6f58f13 (cdmlib): add some term uuids to E+M import
Andreas Müller
10:12 PM feature request #8286 (Resolved): Add cm as unit term to CDM
added to cdmlib too. Please review. Andreas Müller
10:07 PM feature request #8286: Add cm as unit term to CDM
See additivity_ontology for uuid and labels.
950c5919-53e4-47ab-9efd-0ea86daa98ca
centimeter
cm
Andreas Müller
10:10 PM Revision 61a43718 (cdmlib): ref #8286 add centimeter to MeasurementUnit
Andreas Müller
10:09 PM Revision ce87358e (cdmlib): ref #8189 adapt tests for ConfigFileUtilTest
Andreas Müller
07:30 PM feature request #8288 (New): Use plural for e.g. Common Name feature in dataportal
If a plural exists we may think about using the plural for a feature in dataportal.
For details see #8147
Andreas Müller
04:16 PM Revision 0731be34 (taxeditor): ref #6774 Adapt to service layer change
Patrick Plitzner
02:59 PM Revision 4504940c (cdmlib): ref #6774 Refactor OWL export
- move OWL model to export state Patrick Plitzner
12:16 PM Revision fa19287f (cdmlib): minor
Katja Luther
11:59 AM discussion #6678 (Feedback): [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
please answer to the questions in comment 3 Andreas Kohlbecker
11:57 AM Revision 23a017dd (cdm-dataportal): ref #6678 showing the prefix 'orth. var.' for orthogtapic variants
Andreas Kohlbecker
11:55 AM bug #8252 (In Progress): reference ellypsis must not be applied to all reference types
During a phone call today we decided to give the following solution a try:
1. The section author team will be trun...
Andreas Kohlbecker
10:17 AM Revision ffb73a43 (cdmlib): fix sortindex for root nodes and harmonize column names
Katja Luther
10:17 AM Revision 2b161626 (cdmlib): add check for dna data
Katja Luther
08:20 AM feature request #5855 (Closed): potential improvements in settings for name relationship types
i am closing this issue now, please reopen I if you feel like you want to review this. Andreas Kohlbecker
08:13 AM feature request #5855 (Resolved): potential improvements in settings for name relationship types
Applied in changeset commit:cdm-dataportal|cd4f8f20a3ebe850407af662a1f3295bd2b3c488. Andreas Kohlbecker
08:13 AM Revision cd4f8f20 (cdm-dataportal): fix #5855 improving name relations settings:
- limiting select options
- differentiating from releations to be displayed in name page
Andreas Kohlbecker

05/20/2019

06:34 PM Revision 16592d77 (cdm-dataportal): ref #7975 renaming name relationshiop render method to emphazize on inline nature of the result
Andreas Kohlbecker
06:28 PM feature request #7975: Implement a block to display name relations
This is rather a request for a new feature than an improvement for the existing implementation which creates an inlin... Andreas Kohlbecker
04:41 PM task #5856 (Feedback): [DISCUSS] Consider implemeting additional name relationships
Is this still relevant or will the original spelling relation be removed anyway in turn of solving #3967? Andreas Kohlbecker
04:26 PM discussion #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
I am having two questions regarding the ticket description:
> Maybe it is even enough to only show "orth. var." ...
Andreas Kohlbecker
03:14 PM bug #5774 (Closed): cdmserver misses to detect some errors in failed instances
It occurred again in the demo1 server.
Problem fixed.
Since it is quite time consuming to do do all the testing...
Andreas Kohlbecker
03:11 PM bug #5774 (Resolved): cdmserver misses to detect some errors in failed instances
Applied in changeset commit:cdm-server|0d7b39c76dff44342ce55bf721168a6974fccdab. Andreas Kohlbecker
03:10 PM bug #5774 (In Progress): cdmserver misses to detect some errors in failed instances
Andreas Kohlbecker
03:11 PM Revision 0d7b39c7 (cdm-server): fix #5774 configuring webapp contexts to re-throw errors on startup
Andreas Kohlbecker
01:16 PM feature request #8284 (Resolved): starting a registration for an existing name causes the name editor to pop up in read only mode
Vorschlag übernommen für beide Fälle. Dann können wir dieses Ticket schließen? Andreas Kohlbecker
01:15 PM Revision 2011fbd2 (cdm-vaadin): ref #8284 changing user hint regarding how to proceed with entering types for an existing name
Andreas Kohlbecker
01:01 PM Revision a0d2a22c (cdm-dataportal): ref #8287 comment to re-enable multi selection of options once the web service bug is fixed
Andreas Kohlbecker
12:59 PM feature request #7966: Registration search simplify type select options
@Henning: please review Andreas Kohlbecker
12:58 PM feature request #7966: Registration search simplify type select options
This issue is solved, however there is a problem in the service method driving the search (#8287) due to which the op... Andreas Kohlbecker
12:37 PM feature request #7966 (Resolved): Registration search simplify type select options
Applied in changeset commit:cdm-dataportal|84ec1c1b58a6d4667402a3f456f90e76c92ad5c5. Andreas Kohlbecker
12:56 PM bug #8287 (Closed): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
In case the collection of typeDesignationStatusUuids contains both, a `null` value and UUIDs the request fails.
Th...
Andreas Kohlbecker
12:38 PM Revision dc58a71b (cdm-dataportal): fix #7966 using the TypeDesignationStatusFilter to simplify the registration search by status type
Andreas Kohlbecker
12:37 PM Revision 84ec1c1b (cdm-dataportal): fix #7966 using the TypeDesignationStatusFilter to simplify the registration search by status type
Andreas Kohlbecker
12:35 PM Revision fa2b2dbb (cdmlib): ref #7966 preparing web service contollers to search for NULL type status via UUID parameter
Andreas Kohlbecker
12:33 PM feature request #7610 (Duplicate): Type search in PhycoBank Portal
Ok to close this as duplicate given by henning in #7965#note-11 implicitely Andreas Kohlbecker
10:40 AM feature request #8286 (Closed): Add cm as unit term to CDM
We may also add cm only to the additivity production DB Patrick Plitzner

05/19/2019

11:08 PM bug #6938 (Resolved): Tasks before a new Euro+Med import
should be resolved, I did run all the steps (1 mail to ERS is still open, about corrupt hierarchies for Polygonum etc.) Andreas Müller
09:43 PM task #7369 (Resolved): Handle taxonomically valueless taxa correctly
The taxa are now all exported to a common root taxon "Valueless". They can be moved somewhere else after import if ne... Andreas Müller
09:43 PM feature request #8285 (New): Handle taxonomically valueless taxa in data portal
for details see #7369#note-15
relevant taxa are currently marked with marker "taxonomically valueless"
![](clip...
Andreas Müller

05/18/2019

08:08 AM feature request #7790: [DISCUSS] E+M: Language-Area Mapping
Maybe it is an overload. In TaxEditor it can be handled by showing those areas that have been used already for the gi... Andreas Müller
07:51 AM feature request #8281: Doubtful flag for TaxonNode
ERS:
ich sehe das genauso wie du. "Unplaced" taxa sind gar nicht hierarchisch eingeordnet, während provisional bed...
Andreas Müller
07:49 AM bug #7786 (Resolved): ERS: Try to solve those occurrence sources for which the reference number can not be resolved
ERS:
dies sind vermutlich alles Tippfehler. Doppelte Leerzeichen zwischen den Referenznummern in den Greuter-Table...
Andreas Müller
07:48 AM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be resolved
most of them seem to be errors, especially those having no number at all. Others can not be resolved. Andreas Müller

05/17/2019

04:13 PM bug #8278 (Resolved): LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator
most probably fixed - please close if the LIE no longer occurs. Andreas Kohlbecker
04:11 PM feature request #7965 (Closed): Registration search simplify type select options
Andreas Kohlbecker
04:07 PM feature request #7965: Registration search simplify type select options
okay Wolf-Henning Kusber
04:05 PM feature request #7965: Registration search simplify type select options
NPE fixed by commit:cdm-vaadin|5fd9990b
So I will close this ticket now.
#7966 will be implemented in according...
Andreas Kohlbecker
03:40 PM feature request #7965: Registration search simplify type select options
no further problems:
merge of entries without accidents:
Lectotype = merge of lectotype (name) of genus
and
Lec...
Wolf-Henning Kusber
03:34 PM feature request #7965: Registration search simplify type select options
Hallo Andreas,
bin in Test List Type Status,
wenn ich dort -none- auswähle, bekomme ich :
~~~
java.lang.NullP...
Andreas Kohlbecker
04:02 PM Revision 5fd9990b (cdmlib): fixing NPE in TypeDesignationStatusFilter processing when '- none -' is selected
Andreas Kohlbecker
04:01 PM Revision c50b9988 (cdm-vaadin): ref #8278 supporting two levels of inRefernces in init-strategies related to ellypsed reference comboboxes
Andreas Kohlbecker
03:31 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
beide Versionen sind streng genommen suboptimal:
statt Click on "Save" to proceed with entering the typifications ...
Wolf-Henning Kusber
03:26 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
Im anderen Fall, nom-ref fehlt, lautet der letzte Satz: '*Click on "Save" to proceed with entering the typifications ... Andreas Kohlbecker
03:18 PM feature request #8284 (In Progress): starting a registration for an existing name causes the name editor to pop up in read only mode
Ok, verstanden!!!!
Dann ändere ich den Text so wie du es vorgeschlagen hast.
Andreas Kohlbecker
03:00 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
Nein, nur mit Save wird der Name in den Workingset gestellt. Nur von dort aus kann selektiert werden, ob name oder sp... Wolf-Henning Kusber
02:56 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
> Click "Save" to start a type designation
verstehe ich das richtig? Der Dialog zur Auswahl der Type-Designation s...
Andreas Kohlbecker
02:40 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
Also alles so lassen, außer:
statt:
Click "Save" to proceed
Click "Save" to start a type designation
Wäre das ...
Wolf-Henning Kusber
02:35 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
Wenn die Referenz fehlt kann nur diese und das Citation-Detail bearbeitet werden, dann speichert "Save" auch die Ände... Andreas Kohlbecker
02:21 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
Wir hatten den Name editor eingebaut, weil wir Namen ohne Referenzen haben, die erst mal eingegeben werden müssen. Wi... Wolf-Henning Kusber
02:11 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
At the bottom of the editor an notification is shown for the user:
![](picture130-1.png)
Can we improve this te...
Andreas Kohlbecker
02:01 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
This is only a question of usability.
When I closed the name editor with save-button, the name was put into the work...
Wolf-Henning Kusber
01:57 PM feature request #8284 (Feedback): starting a registration for an existing name causes the name editor to pop up in read only mode
it is always the name editor that pops up. This way the user can review the name before actually creating the registr... Andreas Kohlbecker
01:50 PM feature request #8284 (Closed): starting a registration for an existing name causes the name editor to pop up in read only mode
Registered name selected, double click on "registration for an existing name"
Result: the (read-only) name editor po...
Wolf-Henning Kusber
03:22 PM feature request #7610 (Feedback): Type search in PhycoBank Portal
Shall we close this ticket in favor of implementing #7966 which suggests a different solution which is exactly the sa... Andreas Kohlbecker
02:47 PM bug #8279 (Closed): ClassCastException in CdmUserHelper.user()
Andreas Kohlbecker
02:46 PM bug #8279 (Resolved): ClassCastException in CdmUserHelper.user()
Applied in changeset commit:cdmlib|b7723abf3053f0e9be6dae43c191048aa67729da. Andreas Kohlbecker
02:47 PM Revision c251b820 (cdm-vaadin): ref #8279 removing unused call to CdmUserHelper.user()
Andreas Kohlbecker
02:46 PM Revision 16dabe1c (cdmlib): fixing wording in logging
Andreas Kohlbecker
02:46 PM Revision b7723abf (cdmlib): fix #8279 avoiding ClassCastExceptin in CdmUserHelper
Andreas Kohlbecker
02:28 PM Revision 9997fca9 (cdmlib): revert commit e358ae186 and adapt return type
Andreas Müller
01:58 PM bug #8252: reference ellypsis must not be applied to all reference types

not realy, people do not know alle given names.
How I could differentiat between D.M. (= Ditmar Metzeltin) and D.M...
Wolf-Henning Kusber
01:53 PM bug #8252: reference ellypsis must not be applied to all reference types
Would using the acronyms or truncating the names of the section authors to acronyms be helpful?
e.g.:
* Kulikowsy...
Andreas Kohlbecker
01:09 PM Revision 1bc072c0 (cdmlib-apps): add state to getVocabulary for imports
Andreas Müller
01:02 PM Revision bc9a9e44 (cdmlib): add E+M common name area voc uuid
Andreas Müller
01:01 PM Revision 110bd37f (cdmlib): ref #8189 fix user.home in AccountStore
Andreas Müller
12:59 PM Revision 9d359dc9 (cdmlib): use state in getVocabulary
Andreas Müller
12:18 PM Revision ffbeace5 (cdm-dataportal): Merge tag '5.7.1' into develop
tagging version 5.7.1 Andreas Kohlbecker
12:18 PM Revision 4b239fc7 (cdm-dataportal): Merge branch 'hotfix/5.7.1'
Andreas Kohlbecker
12:17 PM Revision 64a5b05a (cdm-dataportal): Merge branch 'develop' into hotfix/5.7.1
Andreas Kohlbecker
10:56 AM bug #8229: reload of the bulkeditor does not work correctly
The problem was that changes made in name editor did not appear in bulk editor after a new search.
This is a follo...
Katja Luther
06:52 AM bug #8229 (Feedback): reload of the bulkeditor does not work correctly
I am not sure what to test here. Do you have a step by step explanation of what did not work before? Patrick Plitzner
10:25 AM Revision ae7ade6d (cdm-dataportal): change herbarium to collection in specimen table
Katja Luther
08:36 AM feature request #8283 (Resolved): Allow adding media to terms in taxeditor
Applied in changeset commit:taxeditor|d418413628bd797221e1c9101ec57af041f1dab5. Patrick Plitzner
08:31 AM feature request #8283 (Closed): Allow adding media to terms in taxeditor
This could be done in the details view for example Patrick Plitzner
08:36 AM Revision d4184136 (taxeditor): fix #8283 Add media section to term details view
Patrick Plitzner
06:40 AM Revision e246a4ee (taxeditor): Fix NPE when connecting to local cdm server with dev settings
Patrick Plitzner

05/16/2019

04:53 PM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
TaxonNode will have a doubtful flag (#8281). We need to implement this in TaxEditor, too.
Important is that the la...
Andreas Müller
04:51 PM bug #8280 (Closed): polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder
Andreas Kohlbecker
03:57 PM bug #8280 (Resolved): polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder
Applied in changeset commit:cdm-dataportal|55a557d83c8145f8fcd3192f02001d2a9adb8b9c. Andreas Kohlbecker
03:55 PM bug #8280 (Closed): polyfills folder check in zen_dataportal/theme-settings.php fails when portal is installed in subfolder
In the http://cichorieae.e-taxonomy.net/portal/admin/appearance/settings/zen_dataportal the polyfills folder check re... Andreas Kohlbecker
04:41 PM feature request #8281 (In Progress): Doubtful flag for TaxonNode
Andreas Müller
04:33 PM feature request #8281: Doubtful flag for TaxonNode
Hallo Eckhard,
folgende Taraxacum Taxa haben alle in der Beziehung zu ihrem Parent ein „provisional“ Flag gesetzt....
Andreas Müller
04:33 PM feature request #8281 (Closed): Doubtful flag for TaxonNode
DISCUSS: Is this the same as the "unplaced" flag?
ERS:
dies bedeutet in allen Fällen, dass die Editoren sich ni...
Andreas Müller
04:41 PM Revision f0e89021 (taxeditor): Remember login for localhost mgd.
Patrick Plitzner
04:08 PM task #7448: Replace auct. reference
we will do all MAN cleanup after migration Andreas Müller
04:01 PM bug #7447 (Resolved): ERS: Fix misapplied name issues for E+M common names.
Andreas Müller
03:57 PM Revision 55a557d8 (cdm-dataportal): fix #8280 fixing polyfills folder check for insrtallations in subfolders
Andreas Kohlbecker
03:19 PM task #7435: Handle also published in correctly
Before closing this ticket we still need to clean remaining note fields.
Also we need to check how this is shown i...
Andreas Müller
03:15 PM Revision 8b6ed3fc (taxeditor): ref #8135 Implement TextualTypeDesignation detail element
Patrick Plitzner
03:07 PM bug #8252: reference ellypsis must not be applied to all reference types
For a pragmatic approach (as of 16 May 2019):
Currently: only 20% authors can be recognized. That means that each ne...
Wolf-Henning Kusber
01:33 PM bug #8252: reference ellypsis must not be applied to all reference types
Wolf-Henning Kusber wrote:
> Ellipsis must not be applied to in-authors/nomenclatural author team.
> Example:
> ...
Andreas Kohlbecker
02:46 PM bug #7896 (Closed): NPE, NullPointerException in RelationshipTermBase
It's fixed since http://api.cybertaxonomy.org/flora-malesiana/portal/taxon/09d427ff-a520-413e-b86b-e39abac29f52/synon... Andreas Kohlbecker
02:38 PM bug #7953: Book in BookSeries: incomplete titleCache misses series title
Hi Andreas this is your turn. Please see Hennings answer in comment !#10 Andreas Kohlbecker
02:36 PM feature request #8193 (Closed): TaxonNamePopupEditor: add select form element for Nomenclatural status
I don't have this little grey box in my status bar while typing. I think we should just ignore this little artifact a... Andreas Kohlbecker
02:20 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Hi Henning
i could not reproduce the problem that
> Genera imported for the taxon graph AND species eintered i...
Andreas Kohlbecker
02:11 PM bug #7881 (Closed): reference selection combobox broken after error in ...
the cascade="all-delete-orphan" problems did not occur again Andreas Kohlbecker
02:10 PM bug #8099 (Closed): Error saving name type designation editor due to problem in poupeditor context
the problem which augments other exceptions has been fixed, since further information on the root cause has been lost... Andreas Kohlbecker
02:01 PM bug #8160 (Closed): CdmBeanItemContainerFactory as readonly service bean
The implementation works as expected and the cascade="all-delete-orphan" problems did not occur again Andreas Kohlbecker
02:01 PM bug #8065 (Closed): HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table
The implementation works as expected and the cascade="all-delete-orphan" problems did not occur again Andreas Kohlbecker
02:00 PM bug #8075 (Closed): multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations
the cascade="all-delete-orphan" problems did not occur again Andreas Kohlbecker
01:59 PM bug #8158 (Closed): cascade="all-delete-orphan" problem when ....
the cascade="all-delete-orphan" problems did not occur again Andreas Kohlbecker
01:50 PM Revision e43f8991 (cdm-vaadin): removing hard coded debug level from logger
Andreas Kohlbecker
01:48 PM bug #8279 (Closed): ClassCastException in CdmUserHelper.user()
found in the server log:
~~~
com.vaadin.server.ServerRpcManager$RpcInvocationException: Unable to invoke method c...
Andreas Kohlbecker
01:45 PM bug #8278 (Closed): LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator
found in the server log
~~~
[phycobank] 2019-05-07 15:37:04,623 ERROR [qtp1207140081-35] [com.flowingcode.vaadin....
Andreas Kohlbecker
12:55 PM bug #8277 (Duplicate): Username (and other fields) should allow c&p
das Feld username im User Details View, sollte lediglich schreibgeschützt sein. Kopieren sollte noch möglich sein für... Andreas Müller
11:35 AM bug #8189: Allow configuration of 'user.home' via the spring environment
> The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows systems when running in maven
...
Andreas Kohlbecker
10:21 AM Revision 75b2f55e (cdmlib-apps): log special pro parte relations
Andreas Müller
10:21 AM Revision 1a2954e6 (cdmlib-apps): ref #7823 add createdUpdated info to occurrences for E+M import
Andreas Müller
10:20 AM Revision da6c2341 (cdmlib-apps): ref #7823 deduplicate usernames depending on secrefs, use xml imports (and other imports) as source, not username
Andreas Müller
10:11 AM bug #7823 (Resolved): User Persons are not deduplicated
fixed Andreas Müller
09:09 AM Revision e358ae18 (cdmlib): fix findTitleCache in service layer
Andreas Müller
09:08 AM Revision f15f8e33 (cdmlib): ref #7470 preliminary set text to transient in TextualTypeDesignation
Andreas Müller
06:38 AM Revision 509e35a1 (cdmlib): make referenceTitleCache index consistent
Andreas Müller
06:37 AM Revision 703f7ef8 (cdmlib): ref #7470 preliminary set isVerbatim to transient in TextualTypeDesignation
Andreas Müller

05/15/2019

02:57 PM Revision 824a9c9a (cdmlib): ref #7470 add TextualTypeDesignation.isVerbatim to test schemas
Andreas Müller
02:25 PM Revision 6fab0d12 (cdmlib): ref #7470 add TextualTypeDesignation to hibernate.cfg
Andreas Müller
12:40 PM Revision 98349912 (taxeditor): ref #6774 Adapt to service layer changes
Patrick Plitzner
10:48 AM feature request #8135 (In Progress): Implement verbatim type information in TaxEditor
Patrick Plitzner
10:42 AM feature request #8248 (In Progress): Implement OWL import
Patrick Plitzner
09:55 AM bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes
We should fix this, because the preference page is empty at the moment Katja Luther
09:17 AM feature request #8276 (New): [DISCUSS] References need bibliographicAuthorCache
The wanted bibliographic citation for an author may differ from the standard citation. Therefore we may need a cache ... Andreas Müller
08:55 AM Revision f06516e8 (cdmlib): ref #6774 Export term vocabulary for each term
Patrick Plitzner
08:07 AM Revision ea70ea0e (cdmlib): ref #6774 Refactor export for multiple term trees
Patrick Plitzner
08:06 AM feature request #6774 (In Progress): Implement OWL export
Patrick Plitzner

05/14/2019

01:47 PM feature request #8257 (Feedback): Remove factory methods for term node creation
@Andreas M.: Can you please have look at the last remaining factory method which is used in one last spot:
~~~java...
Patrick Plitzner
12:26 PM feature request #8046 (Rejected): Term lists in term manager should be positiv lists
the term list are already positiv lists. Katja Luther
12:01 PM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
All invalid names (term ids may need to be adapted)
~~~
SELECT ns.type_id, ns.citation_id, n.nameCache, n.titleCa...
Andreas Müller
11:45 AM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
We do not have any invalid designation relationships in E+M (BM):
~~~
SELECT *
FROM RelPTaxon rel
WHERE RelQu...
Andreas Müller
11:43 AM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
ERS (2018-03-28):
Dear all,
to facilitate the discussion about the status "invalid designation", I am continuin...
Andreas Müller
11:36 AM task #8275 (Worksforme): [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
Is this the same?
In BM dataportal version of E+M it looks like ALL nom. inval. are shown as inval. desig.:
![...
Andreas Müller
11:51 AM Revision be44847d (taxeditor): minor
Katja Luther
11:22 AM Revision cc1302bd (taxeditor): ref #8045: check whether all db preferences are deleted from DB if value is default value
Katja Luther
08:46 AM Revision 0980a8e8 (taxeditor): fix NPE in TaxonNodeWizard
Katja Luther

05/13/2019

09:05 PM Revision 3e0f59b5 (cdmlib-apps): set all taxrel references to null in E+M import if same as sec
Andreas Müller
08:21 PM Revision 7fe80463 (cdmlib-apps): set parent-child references to null in E+M import if same as sec
Andreas Müller
08:19 PM Revision a6d6a2c7 (cdmlib): minor
Andreas Müller
03:58 PM bug #8189 (Feedback): Allow configuration of 'user.home' via the spring environment
The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows systems when running in maven (no... Andreas Müller
02:38 PM bug #8229 (Resolved): reload of the bulkeditor does not work correctly
Katja Luther
10:20 AM bug #8229: reload of the bulkeditor does not work correctly
the reload works for changes of the name itself, but the descriptions are not loaded again. Katja Luther
02:20 PM feature request #4011: disallow changing publish flag for users with unsuffcient rights
Check if this is still an open issue Andreas Müller
02:11 PM Revision 45db0045 (taxeditor): ref #8229: update correct property path for search in name and taxon bulkeditor
Katja Luther
02:06 PM feature request #7799 (Resolved): AM: Parse authorteams
This should be fixed. We may check for not atomized authors after import again Andreas Müller
01:55 PM task #7816: Handle nomStatus references correctly
We will decide this only after migration Andreas Müller
12:49 PM task #7436: Handling verbatimDate in E+M import
A lot of work has been done already. The final work on notes (and similar) we will do after the import. Andreas Müller
11:30 AM bug #8274 (In Progress): Very large taxa (synonymies) can not be handled by the dataportal
copied from #1985
for more information see there.
Example taxon: Hieracium murorum species group (http://test....
Andreas Müller
09:58 AM Revision c3d73ea5 (cdmlib): fix #8264: add published to synonym table
Katja Luther
09:53 AM feature request #8264: excluded and excluded notes in cdmlight export
Hallo,
ja, da hatte ich noch nicht an die Synonyme gedacht (die ja auch in Taxon Nodes nicht auftauchen würden). Vie...
Katja Luther

05/12/2019

12:52 PM task #7713: Atomize last scrutiny references
we will do this after migration Andreas Müller
12:50 PM task #7796 (Resolved): [CHECK] Handle Bibliography Name Facts correctly
As in note 11 it was decided not to import them at all this ticket is fixed (in code this is already implemented) Andreas Müller
11:21 AM task #7796: [CHECK] Handle Bibliography Name Facts correctly
Move to check if they are really not shown in production portal. Andreas Müller
11:15 AM bug #7828: Remove date published from journals in E+M
This is generally solved. I final check should be done after import. (currently the 2 above issues are still open) Andreas Müller
11:14 AM bug #7828: Remove date published from journals in E+M
AM:
folgende 2 Journals haben noch ein Datum, was eigentlich nicht sein soll (der Artikel soll das Datum haben):
...
Andreas Müller
10:43 AM feature request #3990 (Resolved): [DISCUSS] How to implement citation suggestion to each taxon
The discussion is finished. We may check after migration if everything looks like expected and what still needs to be... Andreas Müller
10:40 AM bug #3992 (Resolved): [CHECK] Use last scrutiny instead of sec reference
Generally this worked. Special cases will be handled in separate tickets.
After import we will need to check all t...
Andreas Müller
08:12 AM Revision ad54ab74 (cdmlib-apps): latest changes to GreeceImageActivator
Andreas Müller
07:19 AM bug #7075 (In Progress): Excel import for images
Andreas Müller

05/10/2019

02:29 PM Revision 61f907d3 (taxeditor): Merge branch 'hotfix/5.7.2'
jenkins
01:15 PM task #7319 (Resolved): [CHECK] Import synonyms correctly in E+M
This seems to be fixed. There are only pro parte/partial synonyms left in the candidates list. And they seem to be ha... Andreas Müller
01:12 PM Revision 1f183072 (taxeditor): fix factual data view for name facts
Katja Luther
01:07 PM Revision f70fdd1a (taxeditor): Updated version in pom / project files to taxeditor version : 5.7.2 and cdmlib version : 5.7.0
jenkins
01:05 PM feature request #8273 (Feedback): abcd import: check for all specimen for DNA in DNABank
To get the dna for a specimen check the dnaBank with following path:
~~~
<like path='/DataSets/DataSet/Units/Unit...
Katja Luther
01:02 PM Revision f7e044c5 (taxeditor): fix factual data view for name facts
Katja Luther
12:49 PM task #7341 (Resolved): [Check] CommonName import issues
This is generally solved. We may want to check a last time after import if facts and atomized common names are fully ... Andreas Müller
12:45 PM task #7346 (Resolved): [CHECK] Use separate area vocabulary for common names
This is generally solved. We only need to discuss how "Wales" should be handled as it is the only area which does not... Andreas Müller
12:43 PM Revision 756e32b0 (cdmlib-apps): add explicit handling for E+M status I(P)
Andreas Müller
12:41 PM Revision c268fd2e (cdmlib-apps): ref #7346 adapt E+M area import to work correctly
Andreas Müller
12:32 PM task #8272 (New): Add includedIn relations to E+M areas
this can be done only after terms have been refactored.
SOme ideas can be found in description of #7346.
Andreas Müller
12:02 PM bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies
This generally should not be possible!!
An OrderedTerm must NEVER be moved to an unordered vocabulary. AND currently...
Andreas Müller
10:31 AM feature request #8264 (Resolved): excluded and excluded notes in cdmlight export
Applied in changeset commit:cdmlib|82e89bf1fa44953ae1f9f162948b49cb0f385150. Katja Luther
10:31 AM Revision 82e89bf1 (cdmlib): fix #8264: add excluded, unplaced and published to taxon table of cdm light export
Katja Luther
09:44 AM feature request #7433 (Resolved): new service method to get specimen by genetic AccessionNumber
Katja Luther

05/09/2019

03:22 PM bug #8271 (Duplicate): Format for aggregates with author and nom. ref. correctly
Andreas Müller
03:18 PM bug #8271 (Duplicate): Format for aggregates with author and nom. ref. correctly
maybe there is somewhere a similar ticket.
ERS (2014):
wenn Autoren und nom.refs bei rank=aggregate vorhanden s...
Andreas Müller
01:12 PM bug #8270 (New): TermDTOs with an orderIndex are ordered in unordered term vocabularies
To reproduce this behavior:
1. Open the term editor for states.
1. Move a term to the "State" vocabulary (Must be...
Patrick Plitzner
11:33 AM Revision d960a7a1 (taxeditor): Merge branch 'hotfix/5.7.1'
jenkins
10:27 AM Revision 247d3114 (cdmlib-apps): Add missing explicit sources check to E+M import validation
Andreas Müller
10:26 AM Revision 67e58b3f (cdmlib-apps): remove some areas from E+M area Import
Andreas Müller
09:58 AM feature request #8269 (New): check all parts of the editor whether it handles the expand correct
We should have a look on the whole application where the state of the part is saved and where not.
There are loca...
Katja Luther
09:36 AM Revision ad568992 (taxeditor): ref #8263 Simplify refresh logic
- refresh is invoked on the entire tree since caching the children
already boosts the performance
Patrick Plitzner
09:35 AM Revision 2b71b448 (taxeditor): ref #8263 Simplify refresh logic
- refresh is invoked on the entire tree since caching the children
already boosts the performance
Patrick Plitzner
09:13 AM feature request #8268 (New): Add term count to term vocabularies in term editor
The term count could be shown in the label of the vocabulary like `<voc_name> (count)` Patrick Plitzner

05/08/2019

05:24 PM bug #8266 (Closed): local preference is not evaluated for distribution editor status
Tested on nightly: changed common name preferences, saved, re-connected, preference changes were saved
Patrick Plitzner
02:08 PM bug #8266 (Resolved): local preference is not evaluated for distribution editor status
Katja Luther
01:12 PM bug #8266 (Closed): local preference is not evaluated for distribution editor status
mail NK:
Hallo,
irgendwie scheint es einen neuen(?) bug zu geben: Ich kann die local preferences für zur Auswah...
Katja Luther
05:21 PM bug #8267 (Closed): common name preference saving does not work correctly
Tested on nightly: changed common name preferences, saved, re-connected, preference changes were saved Patrick Plitzner
02:03 PM bug #8267 (Resolved): common name preference saving does not work correctly
please review Katja Luther
01:22 PM bug #8267 (Closed): common name preference saving does not work correctly
mail AM:
Hallo Katja,
wie es scheint lässt sich die Präferenz der CommonNames, wenn sie einmal gesetzt ist nich...
Katja Luther
05:19 PM bug #8258 (Closed): Default Feature Tree contains name features and features
tested on nightly. Name features do not appear for taxon descriptions and vica versa Patrick Plitzner
02:06 PM bug #8258: Default Feature Tree contains name features and features
please review Katja Luther
05:18 PM feature request #8263: Improve performance of term editor
For testing the performance try cdm_production_additivity_ontology on the test server Patrick Plitzner
05:00 PM feature request #8263 (Resolved): Improve performance of term editor
For review just try out every operation: delete, create, move
Known issue: When creating a new term or vocabulary ...
Patrick Plitzner
05:16 PM bug #8265 (Closed): Referencing objects view does not work for term editor
tested on nightly. Works fine Patrick Plitzner
02:04 PM bug #8265 (Resolved): Referencing objects view does not work for term editor
please review Katja Luther
01:10 PM bug #8265 (Closed): Referencing objects view does not work for term editor
mail AM:
Hallo,
kann es sein, dass der Referencing Objects View für Terme gerade gar nicht mehr funktoniert? Ic...
Katja Luther
04:52 PM Revision 0d23864b (taxeditor): ref #8263 Adapt to hotfix version of cdmlib
- temporary commit for hotfix which will be reverted in develop because
the cdmlib service method already sets the te...
Patrick Plitzner
04:50 PM Revision c4de9729 (taxeditor): Revert "ref #8263 Adapt to hotfix version of cdmlib"
This reverts commit 71dd7444530a8bfa7dd7b1a749e88dc0db14027a. Patrick Plitzner
04:49 PM Revision 71dd7444 (taxeditor): ref #8263 Adapt to hotfix version of cdmlib
- temporary commit for hotfix which will be reverted in develop because
the cdmlib service method already sets the te...
Patrick Plitzner
04:42 PM Revision 0dcf41f3 (taxeditor): ref #8263 Cache child terms in content provider
Patrick Plitzner
04:41 PM Revision d181347e (taxeditor): ref #8263 Full refresh when creating a new vocabulary
Patrick Plitzner
04:41 PM Revision edc79e40 (taxeditor): ref #8263 Fix refresh of source vocabulary after moving terms
Patrick Plitzner
04:41 PM Revision ad1212c9 (taxeditor): Revert "ref #8263 Set term vocabulary DTO when fetching terms"
This reverts commit a9f5e4932d7f9f2b149dd10807935e79f25adf16. Patrick Plitzner
04:36 PM Revision c0febbf4 (taxeditor): ref #8263 Cache child terms in content provider
Patrick Plitzner
03:26 PM Revision ef026e18 (taxeditor): show description for terms in referencing objects view
Katja Luther
03:21 PM Revision 0693c74d (taxeditor): show description for terms in referencing objects view
Katja Luther
03:11 PM Revision 2d07d699 (taxeditor): ref #8263 Full refresh when creating a new vocabulary
Patrick Plitzner
03:06 PM Revision a248ff4a (taxeditor): ref #8263 Fix refresh of source vocabulary after moving terms
Patrick Plitzner
01:53 PM Revision 727ab272 (taxeditor): ref #8263 Only refresh edited terms when saving
Patrick Plitzner
01:53 PM Revision edc368f2 (taxeditor): ref #8263 Set term vocabulary DTO when fetching terms
- temporary commit for hotfix which will be reverted in develop because
the cdmlib service method already sets the te...
Patrick Plitzner
01:53 PM Revision d04ede8b (taxeditor): ref #8263 Adapt to service method change
Patrick Plitzner
01:52 PM Revision ba5714f0 (taxeditor): ref #8263 Only refresh affected elements after operation
Patrick Plitzner
01:42 PM Revision d570810d (taxeditor): Revert "ref #8263 Set term vocabulary DTO when fetching terms"
This reverts commit a9f5e4932d7f9f2b149dd10807935e79f25adf16. Patrick Plitzner
01:40 PM Revision dea9c1d7 (taxeditor): ref #8263 Only refresh edited terms when saving
Patrick Plitzner
01:37 PM Revision adbadadc (taxeditor): fix update referencing objects view for term editor
Katja Luther
01:37 PM Revision 979be737 (taxeditor): fix local preference evaluation for distr. editor status
Katja Luther
01:37 PM Revision d3341b37 (taxeditor): fix local preference evaluation for distr. editor status
Katja Luther
01:37 PM Revision f1e585d2 (taxeditor): fix correct set default handling for common name area pref
Katja Luther
01:37 PM Revision 6f2cbbc1 (taxeditor): fix correct saving of common name area preference
Katja Luther
01:37 PM Revision 2f7b37df (taxeditor): fix #8258: default feature tree without name features
Katja Luther
01:37 PM Revision 963bbfd1 (taxeditor): fix default feature tree for facts and name facts
Katja Luther
01:28 PM Revision a9f5e493 (taxeditor): ref #8263 Set term vocabulary DTO when fetching terms
- temporary commit for hotfix which will be reverted in develop because
the cdmlib service method already sets the te...
Patrick Plitzner
01:04 PM Revision 92657983 (cdmlib): ref #7433: changes to get dnaSample for genetic accession number
Katja Luther
12:59 PM Revision 6eaec849 (cdm-dataportal): implement blast search table for the result
Katja Luther
12:54 PM feature request #8264 (Closed): excluded and excluded notes in cdmlight export
mail WB:
Hallo Katja,
dumm, dass ich das nicht vor dem Release gefragt habe:
Können wir die Excluded Flag sowie...
Katja Luther
12:52 PM Revision 0a6d2b78 (taxeditor): fix update referencing objects view for term editor
Katja Luther
12:45 PM Revision 9be7822e (taxeditor): fix local preference evaluation for distr. editor status
Katja Luther
12:45 PM Revision 8aa2d5d2 (taxeditor): fix local preference evaluation for distr. editor status
Katja Luther
11:46 AM Revision b84547d8 (taxeditor): Fix infinite loop when moving terms with parent terms
Patrick Plitzner
11:42 AM Revision fe09a3c5 (taxeditor): Updated version in pom / project files to taxeditor version : 5.7.1 and cdmlib version : 5.7.0
jenkins
11:19 AM bug #8129: Load images asynchronously in media details view
Also check #1072 before implementation Andreas Müller
10:48 AM Revision 0398482f (taxeditor): ref #8263 Only refresh affected elements after operation
Patrick Plitzner

05/07/2019

06:16 PM bug #8252: reference ellypsis must not be applied to all reference types
![](picture017-1.png)
Ellipsis must not be applied to in-authors/nomenclatural author team.
Example:
How to corr...
Wolf-Henning Kusber
04:39 PM Revision 06fbc173 (taxeditor): ref #8263 Adapt to service method change
Patrick Plitzner
04:39 PM Revision 5c44f9f7 (taxeditor): Fix infinite loop when moving terms with parent terms
Patrick Plitzner
04:39 PM Revision fe0361ed (cdmlib): ref #8263 Set vocabulary DTO for all term DTOs during initialization
Patrick Plitzner
04:25 PM feature request #8263 (Resolved): Improve performance of term editor
A good test for performance issue is the term editor for stats in DB cdm_production_additivity_ontology which has 900... Patrick Plitzner
04:10 PM Revision 7691ed2a (cdmlib-apps): ref #8257 remove factory method for term node creation in app-import
Andreas Müller
04:00 PM Revision a2fa71cf (taxeditor): ref #8260: save expansion state for supplemental data
Katja Luther
03:32 PM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
For SupplementalData the preference for expansion state was not evaluated, this is fixed with revision 544be2e6d53d1b... Katja Luther
11:26 AM bug #8260 (Closed): Details and Supplemental Data View do not save the expansion state of sections
This is a regression as it worked before. This may have to do with the revamp of the preferences in general. Patrick Plitzner
03:29 PM Revision 544be2e6 (taxeditor): ref #8260: save expansion state for supplemental data
Katja Luther
02:53 PM Revision c31444d4 (cdmlib): E+M special languages
Andreas Müller
02:51 PM Revision 6556d6fb (cdmlib-apps): change to CaucasusEuroMedActivator
Andreas Müller
02:51 PM Revision b9a7909b (cdmlib-apps): latest changes to E+M activator
Andreas Müller
02:49 PM Revision fde70ecd (cdmlib-apps): fix ambigous common name areas and special Spanish languages
Andreas Müller
02:48 PM Revision eafea890 (cdmlib-apps): use default description titleCache for E+M
Andreas Müller
02:48 PM Revision 57994e7e (cdmlib-apps): remove unnessary warning for getObligatoryAttributes to be adapted to new package structure
Andreas Müller
02:47 PM Revision 792cdb2f (cdmlib-apps): remove unnecessary super.resetSession calls
Andreas Müller
01:54 PM Revision 3934222c (taxeditor): fix correct set default handling for common name area pref
Katja Luther
01:49 PM Revision da415864 (taxeditor): fix correct saving of common name area preference
Katja Luther
01:24 PM bug #8259 (Duplicate): Focus of bulkeditor is not set as selection for newly opened referencing objects view
Katja Luther
11:09 AM bug #8259 (Duplicate): Focus of bulkeditor is not set as selection for newly opened referencing objects view
mail von AM:
Öffnen in RefObjects im Bulk Editor
… funktioniert nicht richtig. Sowohl der Details View als auch...
Katja Luther
01:21 PM task #8262 (Resolved): Handle language area Wales correctly
Currently it is the only area in "User defined areas" as it is not in the emArea map. Need to check what happens if w... Andreas Müller
01:13 PM bug #8261 (New): Referencing objects view is missing focus after opening
AM: "Öffnen in RefObjects im Bulk Editor funktioniert nicht richtig. Sowohl der Details View als auch der neu geöffne... Patrick Plitzner
12:13 PM feature request #8257 (Resolved): Remove factory methods for term node creation
Applied in changeset commit:cdmlib|48e5bbde635e7d2fd347cf5c2eef0d103c3699db. Patrick Plitzner
12:12 PM Revision 48e5bbde (cdmlib): fix #8257 Remove factory methods for term node creation
Patrick Plitzner
09:51 AM Revision 1000779d (cdmlib): ref #8045: add Interface for Preference Enums
Katja Luther
09:49 AM bug #8258 (Resolved): Default Feature Tree contains name features and features
Applied in changeset commit:taxeditor|9814168df618526a6f23ea9c38a0ad9391ffc245. Katja Luther
09:41 AM bug #8258 (Closed): Default Feature Tree contains name features and features
The default feature tree should contain only features not belonging to the nameFeature Vocabulary. Katja Luther
09:43 AM Revision 9814168d (taxeditor): fix #8258: default feature tree without name features
Katja Luther
09:22 AM Revision 3d8426c7 (taxeditor): show language label in common name label in factual data view
Katja Luther
09:16 AM Revision f3d50b8f (taxeditor): fix CCE in supplemental data view for description elements
Katja Luther
09:16 AM Revision 755105d4 (taxeditor): ref #8045: show possible entries for preferences in combo boxes and show default value - continue
Katja Luther

05/06/2019

07:36 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
a minor issue: typing in status data, e.g. Article, a small grey area is shown on the status bar (in my browser) Wolf-Henning Kusber
07:33 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
Tested 2019-05-06:
1. Labeles okay, too much entries but this can be solved later
2. Test system has again full f...
Wolf-Henning Kusber
06:51 PM feature request #7797: Second nomenclatural reference
ERS:
"an jam" drückt Zweifel aus, ob die genannte Referenz sich auf denselben Namen bezieht oder nicht
"emend." b...
Andreas Müller
04:57 PM Revision e4854dec (cdm-server): Merge branch 'release/5.7.0' into develop
jenkins
04:57 PM Revision 35f6fdd1 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
04:56 PM Revision dad32b3d (cdm-server): updating poms for branch'release/5.7.0' with non-snapshot versions
jenkins
04:51 PM Revision e4e2d575 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
04:50 PM Revision b814d896 (cdm-webapp): updating poms for branch'release/5.7.0' with non-snapshot versions
jenkins
04:50 PM Revision 11939811 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.7.0
jenkins
04:48 PM Revision 11a57a97 (taxeditor): Merge branch 'release/5.7.0' into develop
jenkins
04:48 PM Revision 7061e724 (taxeditor): Merge branch 'release/5.7.0'
jenkins
04:47 PM Revision 9a7fc46c (cdm-dataportal): Merge branch 'release/5.7.0' into develop
jenkins
04:47 PM Revision 03bb0fe6 (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
jenkins
04:47 PM Revision 58fc859a (cdm-dataportal): updating poms for branch'release/5.7.0' with non-snapshot versions
jenkins
04:46 PM Revision a36d778b (cdm-dataportal): release-preparation: production level css
jenkins
04:46 PM Revision 5fa9f747 (cdm-vaadin): Merge branch 'release/5.7.0' into develop
jenkins
04:46 PM Revision 7703c3e6 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
04:42 PM Revision c3e862bc (cdm-vaadin): updating poms for branch'release/5.7.0' with non-snapshot versions
jenkins
04:42 PM Revision 19b65900 (cdm-vaadin): jenkins bumping cdmlib.version to 5.7.0
jenkins
04:42 PM Revision 0be51620 (cdmlib): Updating develop poms back to pre merge state
jenkins
04:42 PM Revision c820346d (cdmlib): Merge branch 'master' into develop
jenkins
04:42 PM Revision 9e57e41e (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
04:42 PM Revision 528e745a (cdmlib): Merge branch 'release/5.7.0'
jenkins
04:26 PM Revision a87acd96 (cdmlib): updating poms for branch'release/5.7.0' with non-snapshot versions
jenkins
03:43 PM Revision 9fe7e119 (taxeditor): ref #8045: show possible entries for preferences in combo boxes and show default value
Katja Luther
03:35 PM feature request #8257 (In Progress): Remove factory methods for term node creation
Patrick Plitzner
03:35 PM feature request #8257 (Closed): Remove factory methods for term node creation
Currently it is possible to create a `FeatureNode` on its own, e.g. with a given term
~~~java
public static <T e...
Patrick Plitzner
03:27 PM Revision 71377b02 (cdm-vaadin): jenkins bumping cdmlib.version to 5.7.0-SNAPSHOT
jenkins
03:27 PM Revision 8606fba8 (cdm-vaadin): updating poms for 5.8.0-SNAPSHOT development
jenkins
03:27 PM Revision 15e81bbc (cdm-vaadin): updating poms for 5.7.0 branch with snapshot versions
jenkins
03:27 PM Revision 742ef4bd (cdm-vaadin): jenkins bumping cdmlib.version to 5.8.0-SNAPSHOT
jenkins
03:26 PM Revision 5cf2b1f1 (cdm-vaadin): ref #8193 fixing layout problem related to width nom status widget
Andreas Kohlbecker
01:32 PM Revision 90e556b0 (taxeditor): set default for search options if not existing
Katja Luther
01:11 PM Revision 4ea7221a (taxeditor): set default for Search options
Katja Luther
12:23 PM feature request #8256 (Feedback): Show all status preferences as table
The table/list should show all entries for the given predicate with different subject (e.g. /, /taxeditor, /NamedArea... Katja Luther
10:53 AM Revision 3ecd3366 (cdm-vaadin): jenkins bumping cdmlib.version to 5.7.0-SNAPSHOT
jenkins
10:53 AM Revision d058e460 (cdm-vaadin): updating poms for 5.8.0-SNAPSHOT development
jenkins
10:53 AM Revision d7ab130e (cdm-vaadin): updating poms for 5.7.0 branch with snapshot versions
jenkins
10:53 AM Revision b1fa0591 (cdm-vaadin): jenkins bumping cdmlib.version to 5.8.0-SNAPSHOT
jenkins
10:51 AM Revision c9c5ab2b (cdm-vaadin): ref #8193 using abbreviated label for status types
Andreas Kohlbecker
10:40 AM Revision 04474cbf (taxeditor): fix search configuration
Katja Luther
10:18 AM Revision 655e14bf (taxeditor): fix search configuration
Katja Luther
08:42 AM Revision 8a9f6d04 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.7.0-SNAPSHOT
jenkins
08:42 AM Revision c61130a3 (cdm-webapp): updating poms for 5.8.0-SNAPSHOT development
jenkins
08:42 AM Revision 0ec106d3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.8.0-SNAPSHOT
jenkins

05/03/2019

06:14 PM Revision 5167fe82 (taxeditor): fix default feature tree for facts and name facts
Katja Luther
05:25 PM Revision 6e7032cb (taxeditor): Updated version in pom / project files to taxeditor version : 5.8.0-SNAPSHOT and cdmlib version : 5.8.0-SNAPSHOT
jenkins
05:25 PM Revision 0372da2d (taxeditor): Updated version in pom / project files to taxeditor version : 5.7.0 and cdmlib version : 5.7.0
jenkins
05:24 PM Revision 7986c14e (cdm-vaadin): jenkins bumping cdmlib.version to 5.7.0-SNAPSHOT
jenkins
05:24 PM Revision 76b0aad3 (cdm-vaadin): updating poms for 5.8.0-SNAPSHOT development
jenkins
05:24 PM Revision 5e563d74 (cdm-vaadin): updating poms for 5.7.0 branch with snapshot versions
jenkins
05:24 PM Revision 0ad93e72 (cdm-vaadin): jenkins bumping cdmlib.version to 5.8.0-SNAPSHOT
jenkins
05:24 PM Revision 0e81b6de (cdm-dataportal): updating poms for 5.8.0-SNAPSHOT development
jenkins
05:23 PM Revision 5b9eb17b (cdm-server): updating poms for 5.8.0-SNAPSHOT development
jenkins
05:21 PM Revision bc914c97 (cdmlib): updating poms for 5.8.0-SNAPSHOT development
jenkins
04:50 PM feature request #8182 (In Progress): show blast search result
Katja Luther
04:39 PM Revision 761d2335 (taxeditor): use uuid of namedAreas in propertyToLabelMap of distr editor
Katja Luther
04:38 PM feature request #8242 (Resolved): Implement filtered combo boxes for state selection in CharacterMatrix
move to 5.8 because still experimental Patrick Plitzner
04:22 PM feature request #8242 (Feedback): Implement filtered combo boxes for state selection in CharacterMatrix
As this is still experimental I think it is not necessary to review. I will review once the character matrix becomes ... Andreas Müller
10:27 AM feature request #8242 (Resolved): Implement filtered combo boxes for state selection in CharacterMatrix
Patrick Plitzner
04:34 PM feature request #8241 (Closed): Rename FeatureTreeEditor to TermTreeEditor
Patrick Plitzner
04:07 PM feature request #8241 (Feedback): Rename FeatureTreeEditor to TermTreeEditor
hmm, this doesn't make so much sense as long as in standard version only feature trees can be edited. However, as it ... Andreas Müller
11:07 AM feature request #8241 (Resolved): Rename FeatureTreeEditor to TermTreeEditor
Patrick Plitzner
03:45 PM Revision 0a9ff316 (cdmlib): cleanup
Andreas Müller
03:45 PM Revision 09ed14f5 (cdmlib): fix preference value length check in CdmPreference constructor. Adapt to new length
Andreas Müller
02:49 PM Revision 964b77e3 (taxeditor): disable details for distributions in distribution editor
Katja Luther
02:07 PM Revision bbca1d4e (taxeditor): correct subject syntax for area specific status
Katja Luther
01:04 PM Revision 4ca67a68 (taxeditor): minor in preferences
Katja Luther
12:43 PM Revision c35d4c4a (taxeditor): implement get(PrefKey) for exact match of key in preferenceCache
Katja Luther
12:43 PM Revision 20544ac1 (taxeditor): fix NPE
Katja Luther
12:04 PM bug #7223 (Feedback): ReferenceEditor: disable fields depending on the Reference type
Personal Communication has no DOI neither in the interfaces nor in TaxEditor. If this is available in vaadin this is ... Andreas Müller
11:40 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
"And I guess also for personal communication no DOI should be available." correct. Wolf-Henning Kusber
12:03 PM feature request #8255 (New): Unify ReferencePropertyDefinitions and reference interfaces
For details see https://dev.e-taxonomy.eu/redmine/issues/7223#note-28 and before.
To avoid inconsistent behavior w...
Andreas Müller
11:58 AM Revision d4afb9f7 (cdmlib): ref #8242 Ensure order of TermDTO query
Patrick Plitzner
11:41 AM bug #8254 (New): Add term information to state dropdown in CharacterMatrix
Copied from #8242:
Additionally, we should think about adding tooltips with the description (and also image) of th...
Patrick Plitzner
11:40 AM feature request #8248: Implement OWL import
Moving to 5.8 because still experimental Patrick Plitzner
10:29 AM feature request #8248 (Resolved): Implement OWL import
Patrick Plitzner
11:39 AM Revision 6393aae0 (taxeditor): ref #8248 Make OWL import experimental
Patrick Plitzner
11:37 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title
Correct: "Iconographia Diatomologica. 23" is absolutely necessary to identify the book. For my understanding the "pr... Wolf-Henning Kusber
11:30 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title
By the way, this part of the description to me seems incorrect: Expected titleCache is: "Taxonomy - biogeography - di... Andreas Müller
11:28 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title
As described in https://dev.e-taxonomy.eu/redmine/issues/7223#note-19 the print series is meant only for grouping not... Andreas Müller
11:32 AM Revision de022d06 (taxeditor): ref #7589 Temporarily disable auto-aggregation
- will probably be completely removed in future Patrick Plitzner
11:23 AM Revision b1b7be74 (taxeditor): ref #7920: adaptions for changing PreferenceCache
Katja Luther
11:23 AM Revision f42afea1 (taxeditor): adapt preferenceCache for same predicate but different subject
Katja Luther
11:23 AM Revision 89a2873b (taxeditor): use PreferencePredicate for exportDestinationWizard
Katja Luther
11:03 AM Revision 18d607f4 (taxeditor): ref #8241 Rename FeatureTreeEditor to TermTreeEditor
Patrick Plitzner
10:43 AM Revision 2c4c870d (taxeditor): ref #7920: predicate for area specific status pref is the same as for the general pref
Katja Luther
10:25 AM bug #7896: NPE, NullPointerException in RelationshipTermBase
This belongs to 5.6 if fixed, otherwise should be set to Feedback. Please review. Andreas Müller

05/02/2019

06:06 PM Revision 755244f7 (cdmlib): Fix term creation for multiple representations
Patrick Plitzner
05:56 PM Revision 13fd7107 (cdmlib): Add constructor for term type only
Patrick Plitzner
05:19 PM Revision 0d76fc7e (taxeditor): Adapt to cdmlib renaming
Patrick Plitzner
04:07 PM Revision f1f3f9e9 (cdmlib): Fix owl structure tree import test
Patrick Plitzner
03:06 PM Revision 90096ce9 (taxeditor): handle terms without idInVoc in NomenclaturalStatusType comparator
Katja Luther
01:55 PM feature request #8253 (Closed): Authors for genus autonyms
ERS:
den Autor bei infragenerischen Taxa hinter den gesamten Namen zu stellen, wie jetzt in Euro+Med, ist mit Sich...
Andreas Müller
12:41 PM Revision 1f49f91e (cdmlib): Rename Owl import/export to StructureTreeOwl import/export
Patrick Plitzner

05/01/2019

07:24 PM bug #8252: reference ellypsis must not be applied to all reference types
"It is also possible to skip the ellipsis completely in this case some titles could exceed the given space, though.
...
Wolf-Henning Kusber

04/30/2019

11:12 PM bug #8252 (Feedback): reference ellypsis must not be applied to all reference types
> All Titles are given fully up to a length of approx. 60 characters.
>
> This is okay (i) because the the title ca...
Andreas Kohlbecker
09:05 PM bug #8252: reference ellypsis must not be applied to all reference types
All Titles are given fully up to a length of approx. 60 characters.
This is okay (i) because the the title can be ...
Wolf-Henning Kusber
07:53 PM bug #8252 (Resolved): reference ellypsis must not be applied to all reference types
done! please review. Andreas Kohlbecker
03:22 PM bug #8252: reference ellypsis must not be applied to all reference types
reference title cache ellypsis must not be applied to:
Book series
Journal
Proceedings
i.e. all standardised inv...
Wolf-Henning Kusber
03:13 PM bug #8252: reference ellypsis must not be applied to all reference types
I think the same accounts for book series etc.
the reference title cache ellypsis must not be applied to all refer...
Andreas Kohlbecker
03:09 PM bug #8252 (Closed): reference ellypsis must not be applied to all reference types
![](picture551-1.png)
Journal titles in dropdown list in reference editor must not be truncated.
How to different...
Wolf-Henning Kusber
11:10 PM bug #8250 (Closed): ReferenceEditor: inReference must not be required for type book
Andreas Kohlbecker
09:12 PM bug #8250: ReferenceEditor: inReference must not be required for type book
The bug is fixed, input of books with and without series can be done and saved.
This ticket can be closed.
That...
Wolf-Henning Kusber
03:30 PM bug #8250: ReferenceEditor: inReference must not be required for type book
please review Andreas Kohlbecker
03:30 PM bug #8250 (Resolved): ReferenceEditor: inReference must not be required for type book
Applied in changeset commit:cdm-vaadin|80e7f7818a45beba837dadf4ef75837053efe2f0. Andreas Kohlbecker
11:09 PM bug #8251 (Closed): LazyInitializationException (LIE) in featureTree webservice
works now as expected Andreas Kohlbecker
12:41 PM bug #8251: LazyInitializationException (LIE) in featureTree webservice
please review Andreas Müller
12:40 PM bug #8251 (Resolved): LazyInitializationException (LIE) in featureTree webservice
Applied in changeset commit:cdmlib|7d02ee2f5d18a659ae3baf758b8a6010af5004d5. Andreas Müller
12:38 PM bug #8251 (In Progress): LazyInitializationException (LIE) in featureTree webservice
Andreas Müller
12:37 PM bug #8251: LazyInitializationException (LIE) in featureTree webservice
I think I found the problem and can fix it Andreas Müller
11:33 AM bug #8251 (Closed): LazyInitializationException (LIE) in featureTree webservice
example request : http://api.cybertaxonomy.org/cichorieae/portal/featureTree.json?pageNumber=0&pageSize=500 Andreas Kohlbecker
08:44 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
Thanks for the implementation
Tested with one and two status, entering and saving without problems, fine.
...but i...
Wolf-Henning Kusber
07:53 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
ready to be reviewed. Andreas Kohlbecker
03:06 PM feature request #8193 (Resolved): TaxonNamePopupEditor: add select form element for Nomenclatural status
Applied in changeset commit:cdm-vaadin|0aa1233b1d58610d498e17aeb13858211d09d49b. Andreas Kohlbecker
07:54 PM bug #8220 (Closed): incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
Andreas Kohlbecker
03:06 PM bug #8220: incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
All issues are solved.
New issue seen: truncation of journal titles -> new ticket.
Wolf-Henning Kusber
09:03 AM bug #8220: incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
I solved all remaining issues, please review again. Andreas Kohlbecker
07:47 PM Revision 4724d189 (cdmlib): ref #8252 improving ReferenceEllypsisFormatter for print series and proceedings
Andreas Kohlbecker
04:15 PM Revision 6efa5535 (cdmlib): ref #8252 improving ReferenceEllypsisFormatter for journals and other references where the main information is in the title
Andreas Kohlbecker
03:30 PM Revision 80e7f781 (cdm-vaadin): fix #8250 RegistrationEditor inReference required only for Article Section BookSection InProceedings
Andreas Kohlbecker
03:06 PM Revision 0aa1233b (cdm-vaadin): fix #8193 ElementCollectionField to edit nomenclatural status in TaxonNamePopupEditor
Andreas Kohlbecker
03:05 PM Revision 3215b084 (cdmlib): ref #8193 collection setter for TaxonName.status
Andreas Kohlbecker
12:40 PM Revision 7d02ee2f (cdmlib): fix #8251 fix property path for FeatureTreeListController
Andreas Müller
12:40 PM Revision 44164d9c (cdmlib): cleanup
Andreas Müller
08:40 AM Revision f0664483 (taxeditor): search preference cache for prefKey
Katja Luther

04/29/2019

07:15 PM Revision 11c586f4 (cdmlib): minor cleanup
Andreas Müller
06:42 PM Revision 370b41a7 (cdmlib): Update OwlImportTest. Use ClearDBDatSet instead of ClearDataSet. Still failing.
Andreas Müller
05:01 PM Revision cca5f235 (cdm-vaadin): ref #8220 editing exististing names for new regitration: citation detail enabled, section only restriction disabled
Andreas Kohlbecker
04:25 PM Revision 47d72e63 (taxeditor): minor
Katja Luther
04:06 PM Revision 464346c5 (cdmlib): removing debuging code line
Andreas Kohlbecker
04:05 PM feature request #7965: Registration search simplify type select options
please review once the test server is updated Andreas Kohlbecker
04:04 PM feature request #7965 (Resolved): Registration search simplify type select options
Applied in changeset commit:cdm-vaadin|4656c3e23541b17c233d565d4ff02c0053b335f2. Andreas Kohlbecker
04:04 PM Revision 4656c3e2 (cdm-vaadin): fix #7965 using the TypeDesignationStatusFilter elements to simplify the type filter select
Andreas Kohlbecker
04:03 PM Revision 72312cbc (cdmlib): ref #7965 methods to get typeDesignationStatusInUse as term an as filter object
Andreas Kohlbecker
03:48 PM Revision 71952c4c (cdmlib): Fix OWL test package structure
Patrick Plitzner
02:45 PM feature request #3616: Show DescriptionElementBase.timeperiod in Dataportals
As there is the follow up ticket in 5.7 I move this back to 5.6 as the current implementation was done in 5.6 Andreas Müller
02:28 PM Revision ebc7f626 (cdmlib): try to fix test
Andreas Müller
02:18 PM Revision 51c97aab (cdmlib): revert changes in PrefKey
Katja Luther
01:55 PM Revision 21490833 (taxeditor): minor
Katja Luther
01:52 PM Revision f6cdd5da (cdmlib): rename getUuidAndTitleCache for namedAreas
Katja Luther
01:11 PM Revision 833d4759 (taxeditor): minor
Andreas Müller
12:48 PM Revision da04c055 (taxeditor): ref #7920: add handlers and wizards for area specific status preference selection
Katja Luther
12:46 PM Revision 5e1dc099 (taxeditor): ref #7920: add area specific status preference in distribution editor
Katja Luther
12:30 PM Revision 11e0d1a5 (cdmlib): minor
Katja Luther
12:20 PM Revision 467c872e (cdmlib): ref #7920: add predicate for area specicific status
Katja Luther
10:11 AM Revision 4fee3487 (taxeditor): Save edited character in FeatureTreeEditor
Patrick Plitzner
 

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