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From 04/11/2019 to 05/10/2019

05/10/2019

01:15 PM task #7319 (Resolved): [CHECK] Import synonyms correctly in E+M
This seems to be fixed. There are only pro parte/partial synonyms left in the candidates list. And they seem to be ha... Andreas Müller
01:05 PM feature request #8273 (Feedback): abcd import: check for all specimen for DNA in DNABank
To get the dna for a specimen check the dnaBank with following path:
~~~
<like path='/DataSets/DataSet/Units/Unit...
Katja Luther
12:49 PM task #7341 (Resolved): [Check] CommonName import issues
This is generally solved. We may want to check a last time after import if facts and atomized common names are fully ... Andreas Müller
12:45 PM task #7346 (Resolved): [CHECK] Use separate area vocabulary for common names
This is generally solved. We only need to discuss how "Wales" should be handled as it is the only area which does not... Andreas Müller
12:32 PM task #8272 (New): Add includedIn relations to E+M areas
this can be done only after terms have been refactored.
SOme ideas can be found in description of #7346.
Andreas Müller
12:02 PM bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies
This generally should not be possible!!
An OrderedTerm must NEVER be moved to an unordered vocabulary. AND currently...
Andreas Müller
10:31 AM feature request #8264 (Resolved): excluded and excluded notes in cdmlight export
Applied in changeset commit:cdmlib|82e89bf1fa44953ae1f9f162948b49cb0f385150. Katja Luther
09:44 AM feature request #7433 (Resolved): new service method to get specimen by genetic AccessionNumber
Katja Luther

05/09/2019

03:22 PM bug #8271 (Duplicate): Format for aggregates with author and nom. ref. correctly
Andreas Müller
03:18 PM bug #8271 (Duplicate): Format for aggregates with author and nom. ref. correctly
maybe there is somewhere a similar ticket.
ERS (2014):
wenn Autoren und nom.refs bei rank=aggregate vorhanden s...
Andreas Müller
01:12 PM bug #8270 (New): TermDTOs with an orderIndex are ordered in unordered term vocabularies
To reproduce this behavior:
1. Open the term editor for states.
1. Move a term to the "State" vocabulary (Must be...
Patrick Plitzner
09:58 AM feature request #8269 (New): check all parts of the editor whether it handles the expand correct
We should have a look on the whole application where the state of the part is saved and where not.
There are loca...
Katja Luther
09:13 AM feature request #8268 (New): Add term count to term vocabularies in term editor
The term count could be shown in the label of the vocabulary like `<voc_name> (count)` Patrick Plitzner

05/08/2019

05:24 PM bug #8266 (Closed): local preference is not evaluated for distribution editor status
Tested on nightly: changed common name preferences, saved, re-connected, preference changes were saved
Patrick Plitzner
02:08 PM bug #8266 (Resolved): local preference is not evaluated for distribution editor status
Katja Luther
01:12 PM bug #8266 (Closed): local preference is not evaluated for distribution editor status
mail NK:
Hallo,
irgendwie scheint es einen neuen(?) bug zu geben: Ich kann die local preferences für zur Auswah...
Katja Luther
05:21 PM bug #8267 (Closed): common name preference saving does not work correctly
Tested on nightly: changed common name preferences, saved, re-connected, preference changes were saved Patrick Plitzner
02:03 PM bug #8267 (Resolved): common name preference saving does not work correctly
please review Katja Luther
01:22 PM bug #8267 (Closed): common name preference saving does not work correctly
mail AM:
Hallo Katja,
wie es scheint lässt sich die Präferenz der CommonNames, wenn sie einmal gesetzt ist nich...
Katja Luther
05:19 PM bug #8258 (Closed): Default Feature Tree contains name features and features
tested on nightly. Name features do not appear for taxon descriptions and vica versa Patrick Plitzner
02:06 PM bug #8258: Default Feature Tree contains name features and features
please review Katja Luther
05:18 PM feature request #8263: Improve performance of term editor
For testing the performance try cdm_production_additivity_ontology on the test server Patrick Plitzner
05:00 PM feature request #8263 (Resolved): Improve performance of term editor
For review just try out every operation: delete, create, move
Known issue: When creating a new term or vocabulary ...
Patrick Plitzner
05:16 PM bug #8265 (Closed): Referencing objects view does not work for term editor
tested on nightly. Works fine Patrick Plitzner
02:04 PM bug #8265 (Resolved): Referencing objects view does not work for term editor
please review Katja Luther
01:10 PM bug #8265 (Closed): Referencing objects view does not work for term editor
mail AM:
Hallo,
kann es sein, dass der Referencing Objects View für Terme gerade gar nicht mehr funktoniert? Ic...
Katja Luther
12:54 PM feature request #8264 (Closed): excluded and excluded notes in cdmlight export
mail WB:
Hallo Katja,
dumm, dass ich das nicht vor dem Release gefragt habe:
Können wir die Excluded Flag sowie...
Katja Luther
11:19 AM bug #8129: Load images asynchronously in media details view
Also check #1072 before implementation Andreas Müller

05/07/2019

06:16 PM bug #8252: reference ellypsis must not be applied to all reference types
![](picture017-1.png)
Ellipsis must not be applied to in-authors/nomenclatural author team.
Example:
How to corr...
Wolf-Henning Kusber
04:25 PM feature request #8263 (Resolved): Improve performance of term editor
A good test for performance issue is the term editor for stats in DB cdm_production_additivity_ontology which has 900... Patrick Plitzner
03:32 PM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
For SupplementalData the preference for expansion state was not evaluated, this is fixed with revision 544be2e6d53d1b... Katja Luther
11:26 AM bug #8260 (Closed): Details and Supplemental Data View do not save the expansion state of sections
This is a regression as it worked before. This may have to do with the revamp of the preferences in general. Patrick Plitzner
01:24 PM bug #8259 (Duplicate): Focus of bulkeditor is not set as selection for newly opened referencing objects view
Katja Luther
11:09 AM bug #8259 (Duplicate): Focus of bulkeditor is not set as selection for newly opened referencing objects view
mail von AM:
Öffnen in RefObjects im Bulk Editor
… funktioniert nicht richtig. Sowohl der Details View als auch...
Katja Luther
01:21 PM task #8262 (Resolved): Handle language area Wales correctly
Currently it is the only area in "User defined areas" as it is not in the emArea map. Need to check what happens if w... Andreas Müller
01:13 PM bug #8261 (New): Referencing objects view is missing focus after opening
AM: "Öffnen in RefObjects im Bulk Editor funktioniert nicht richtig. Sowohl der Details View als auch der neu geöffne... Patrick Plitzner
12:13 PM feature request #8257 (Resolved): Remove factory methods for term node creation
Applied in changeset commit:cdmlib|48e5bbde635e7d2fd347cf5c2eef0d103c3699db. Patrick Plitzner
09:49 AM bug #8258 (Resolved): Default Feature Tree contains name features and features
Applied in changeset commit:taxeditor|9814168df618526a6f23ea9c38a0ad9391ffc245. Katja Luther
09:41 AM bug #8258 (Closed): Default Feature Tree contains name features and features
The default feature tree should contain only features not belonging to the nameFeature Vocabulary. Katja Luther

05/06/2019

07:36 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
a minor issue: typing in status data, e.g. Article, a small grey area is shown on the status bar (in my browser) Wolf-Henning Kusber
07:33 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
Tested 2019-05-06:
1. Labeles okay, too much entries but this can be solved later
2. Test system has again full f...
Wolf-Henning Kusber
06:51 PM feature request #7797: Second nomenclatural reference
ERS:
"an jam" drückt Zweifel aus, ob die genannte Referenz sich auf denselben Namen bezieht oder nicht
"emend." b...
Andreas Müller
03:35 PM feature request #8257 (In Progress): Remove factory methods for term node creation
Patrick Plitzner
03:35 PM feature request #8257 (Closed): Remove factory methods for term node creation
Currently it is possible to create a `FeatureNode` on its own, e.g. with a given term
~~~java
public static <T e...
Patrick Plitzner
12:23 PM feature request #8256 (Feedback): Show all status preferences as table
The table/list should show all entries for the given predicate with different subject (e.g. /, /taxeditor, /NamedArea... Katja Luther

05/03/2019

04:50 PM feature request #8182 (In Progress): show blast search result
Katja Luther
04:38 PM feature request #8242 (Resolved): Implement filtered combo boxes for state selection in CharacterMatrix
move to 5.8 because still experimental Patrick Plitzner
04:22 PM feature request #8242 (Feedback): Implement filtered combo boxes for state selection in CharacterMatrix
As this is still experimental I think it is not necessary to review. I will review once the character matrix becomes ... Andreas Müller
10:27 AM feature request #8242 (Resolved): Implement filtered combo boxes for state selection in CharacterMatrix
Patrick Plitzner
04:34 PM feature request #8241 (Closed): Rename FeatureTreeEditor to TermTreeEditor
Patrick Plitzner
04:07 PM feature request #8241 (Feedback): Rename FeatureTreeEditor to TermTreeEditor
hmm, this doesn't make so much sense as long as in standard version only feature trees can be edited. However, as it ... Andreas Müller
11:07 AM feature request #8241 (Resolved): Rename FeatureTreeEditor to TermTreeEditor
Patrick Plitzner
12:04 PM bug #7223 (Feedback): ReferenceEditor: disable fields depending on the Reference type
Personal Communication has no DOI neither in the interfaces nor in TaxEditor. If this is available in vaadin this is ... Andreas Müller
11:40 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
"And I guess also for personal communication no DOI should be available." correct. Wolf-Henning Kusber
12:03 PM feature request #8255 (New): Unify ReferencePropertyDefinitions and reference interfaces
For details see https://dev.e-taxonomy.eu/redmine/issues/7223#note-28 and before.
To avoid inconsistent behavior w...
Andreas Müller
11:41 AM bug #8254 (New): Add term information to state dropdown in CharacterMatrix
Copied from #8242:
Additionally, we should think about adding tooltips with the description (and also image) of th...
Patrick Plitzner
11:40 AM feature request #8248: Implement OWL import
Moving to 5.8 because still experimental Patrick Plitzner
10:29 AM feature request #8248 (Resolved): Implement OWL import
Patrick Plitzner
11:37 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title
Correct: "Iconographia Diatomologica. 23" is absolutely necessary to identify the book. For my understanding the "pr... Wolf-Henning Kusber
11:30 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title
By the way, this part of the description to me seems incorrect: Expected titleCache is: "Taxonomy - biogeography - di... Andreas Müller
11:28 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title
As described in https://dev.e-taxonomy.eu/redmine/issues/7223#note-19 the print series is meant only for grouping not... Andreas Müller
10:25 AM bug #7896: NPE, NullPointerException in RelationshipTermBase
This belongs to 5.6 if fixed, otherwise should be set to Feedback. Please review. Andreas Müller

05/02/2019

01:55 PM feature request #8253 (Closed): Authors for genus autonyms
ERS:
den Autor bei infragenerischen Taxa hinter den gesamten Namen zu stellen, wie jetzt in Euro+Med, ist mit Sich...
Andreas Müller

05/01/2019

07:24 PM bug #8252: reference ellypsis must not be applied to all reference types
"It is also possible to skip the ellipsis completely in this case some titles could exceed the given space, though.
...
Wolf-Henning Kusber

04/30/2019

11:12 PM bug #8252 (Feedback): reference ellypsis must not be applied to all reference types
> All Titles are given fully up to a length of approx. 60 characters.
>
> This is okay (i) because the the title ca...
Andreas Kohlbecker
09:05 PM bug #8252: reference ellypsis must not be applied to all reference types
All Titles are given fully up to a length of approx. 60 characters.
This is okay (i) because the the title can be ...
Wolf-Henning Kusber
07:53 PM bug #8252 (Resolved): reference ellypsis must not be applied to all reference types
done! please review. Andreas Kohlbecker
03:22 PM bug #8252: reference ellypsis must not be applied to all reference types
reference title cache ellypsis must not be applied to:
Book series
Journal
Proceedings
i.e. all standardised inv...
Wolf-Henning Kusber
03:13 PM bug #8252: reference ellypsis must not be applied to all reference types
I think the same accounts for book series etc.
the reference title cache ellypsis must not be applied to all refer...
Andreas Kohlbecker
03:09 PM bug #8252 (Closed): reference ellypsis must not be applied to all reference types
![](picture551-1.png)
Journal titles in dropdown list in reference editor must not be truncated.
How to different...
Wolf-Henning Kusber
11:10 PM bug #8250 (Closed): ReferenceEditor: inReference must not be required for type book
Andreas Kohlbecker
09:12 PM bug #8250: ReferenceEditor: inReference must not be required for type book
The bug is fixed, input of books with and without series can be done and saved.
This ticket can be closed.
That...
Wolf-Henning Kusber
03:30 PM bug #8250: ReferenceEditor: inReference must not be required for type book
please review Andreas Kohlbecker
03:30 PM bug #8250 (Resolved): ReferenceEditor: inReference must not be required for type book
Applied in changeset commit:cdm-vaadin|80e7f7818a45beba837dadf4ef75837053efe2f0. Andreas Kohlbecker
11:09 PM bug #8251 (Closed): LazyInitializationException (LIE) in featureTree webservice
works now as expected Andreas Kohlbecker
12:41 PM bug #8251: LazyInitializationException (LIE) in featureTree webservice
please review Andreas Müller
12:40 PM bug #8251 (Resolved): LazyInitializationException (LIE) in featureTree webservice
Applied in changeset commit:cdmlib|7d02ee2f5d18a659ae3baf758b8a6010af5004d5. Andreas Müller
12:38 PM bug #8251 (In Progress): LazyInitializationException (LIE) in featureTree webservice
Andreas Müller
12:37 PM bug #8251: LazyInitializationException (LIE) in featureTree webservice
I think I found the problem and can fix it Andreas Müller
11:33 AM bug #8251 (Closed): LazyInitializationException (LIE) in featureTree webservice
example request : http://api.cybertaxonomy.org/cichorieae/portal/featureTree.json?pageNumber=0&pageSize=500 Andreas Kohlbecker
08:44 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
Thanks for the implementation
Tested with one and two status, entering and saving without problems, fine.
...but i...
Wolf-Henning Kusber
07:53 PM feature request #8193: TaxonNamePopupEditor: add select form element for Nomenclatural status
ready to be reviewed. Andreas Kohlbecker
03:06 PM feature request #8193 (Resolved): TaxonNamePopupEditor: add select form element for Nomenclatural status
Applied in changeset commit:cdm-vaadin|0aa1233b1d58610d498e17aeb13858211d09d49b. Andreas Kohlbecker
07:54 PM bug #8220 (Closed): incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
Andreas Kohlbecker
03:06 PM bug #8220: incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
All issues are solved.
New issue seen: truncation of journal titles -> new ticket.
Wolf-Henning Kusber
09:03 AM bug #8220: incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
I solved all remaining issues, please review again. Andreas Kohlbecker

04/29/2019

04:05 PM feature request #7965: Registration search simplify type select options
please review once the test server is updated Andreas Kohlbecker
04:04 PM feature request #7965 (Resolved): Registration search simplify type select options
Applied in changeset commit:cdm-vaadin|4656c3e23541b17c233d565d4ff02c0053b335f2. Andreas Kohlbecker
02:45 PM feature request #3616: Show DescriptionElementBase.timeperiod in Dataportals
As there is the follow up ticket in 5.7 I move this back to 5.6 as the current implementation was done in 5.6 Andreas Müller

04/26/2019

08:34 PM bug #8250 (Closed): ReferenceEditor: inReference must not be required for type book
![](picture244-1.png)
Reference type Article is perfect (100 % Articles in journal)
Bug in reference type = Boo...
Wolf-Henning Kusber
07:56 PM bug #8220: incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
![](picture084-1.png)
1. Selection of a existing reference is possible
2. Entering a reference detail is not perm...
Wolf-Henning Kusber
12:01 PM bug #8220: incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
solved, please review Andreas Kohlbecker
10:37 AM bug #8220 (Resolved): incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
Applied in changeset commit:cdm-vaadin|6ffb5f981a96c47c5b94d152eb59e33423c7d431. Andreas Kohlbecker
07:51 PM feature request #8215 (Closed): User demand: sorting order in reference editor
Andreas Kohlbecker
07:15 PM feature request #8215: User demand: sorting order in reference editor
I tested the respective case. The problem is perfectly solved. The ticket can be closed Wolf-Henning Kusber
11:08 AM feature request #8215: User demand: sorting order in reference editor
I also worked on the persons and teams please review again Andreas Kohlbecker
05:29 PM bug #8205: SpecimenTypeDesignationsEditor: First selection of mediaReference gets lost
When I copy the reference detail into the respective field, I can select the reference and save it. Than the referenc... Wolf-Henning Kusber
03:30 PM bug #8205: SpecimenTypeDesignationsEditor: First selection of mediaReference gets lost
This problem could disappear when turning the list editor in to a data grid as planned anyway. Andreas Kohlbecker
03:18 PM bug #8205: SpecimenTypeDesignationsEditor: First selection of mediaReference gets lost
This is a tough nut to crack, since this appens only for the mediaReference field.
There is no obvious difference...
Andreas Kohlbecker
10:30 AM bug #8246 (Closed): TaxonNamePopupEditor can not be canceled
Andreas Kohlbecker

04/25/2019

04:04 PM feature request #8215: User demand: sorting order in reference editor
User demand: sorting should be "begins with" not implemented. Sorting as shown on the screen shot. Wolf-Henning Kusber
01:15 PM feature request #8215: User demand: sorting order in reference editor
done! Please test if the behavior is acceptable now. Andreas Kohlbecker
01:14 PM feature request #8215 (Resolved): User demand: sorting order in reference editor
Applied in changeset commit:cdm-vaadin|5acf0504225e0f34e55b4eba216c3e1f8d2edea1. Andreas Kohlbecker
02:50 PM bug #8246: TaxonNamePopupEditor can not be canceled
Test system:
Record with invalid (missing genus) data, cancled, deleted after intended saving, deleted.
Different...
Wolf-Henning Kusber
01:19 PM bug #8246: TaxonNamePopupEditor can not be canceled
please review Andreas Kohlbecker
01:23 PM bug #6766: maven profile to build cdm-vaadin for production purposes
see comment at `eu.etaxonomy.cdm.addon.config.CdmVaadinConfiguration.CdmVaadinServlet` Andreas Kohlbecker
11:53 AM task #8209: use ellypsed references for all reference comboboxes
please test all editors with reference comboboxes. Andreas Kohlbecker
11:52 AM task #8209 (Resolved): use ellypsed references for all reference comboboxes
Applied in changeset commit:cdm-vaadin|3f3399518baa1655730b5753300d451b668bd330. Andreas Kohlbecker
10:07 AM bug #8184 (Closed): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
Andreas Kohlbecker
09:59 AM bug #8184 (Resolved): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
No Problems in Chrome browser. Specimens can be saved, references can be selected. Ticket can be closed. Wolf-Henning Kusber

04/24/2019

02:52 PM bug #8214 (Closed): WeaklyRelatedEntityCombobox is not validated
closing issue after copying the additional requirement to a new ticket #8249. The solution for this additional requir... Andreas Kohlbecker
02:34 PM bug #8249 (New): WeaklyRelatedEntityCombobox: validation of isRequired should only happen after user interaction
WeaklyRelatedEntityCombobox which are required should not be set invalid immediately, only after user interaction
...
Andreas Kohlbecker
01:01 PM bug #8184 (Feedback): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
I tested with the the latest version of the Google Chrome Browser on Mac and on Windows 10 and had no problems.
He...
Andreas Kohlbecker
12:14 PM feature request #8248 (In Progress): Implement OWL import
Patrick Plitzner
12:06 PM bug #8227 (Worksforme): PhycoBank UI and Safari
successfully tested on
* Mac OS 10.10.5 with Safari 10.1.2
* Mac OS 10.14.1 with Safari 12.0.1
I will close th...
Andreas Kohlbecker
11:45 AM bug #8246 (Resolved): TaxonNamePopupEditor can not be canceled
Applied in changeset commit:cdm-vaadin|7095e8e36a979a24f37d9013e389ea64ac9a9cbe. Andreas Kohlbecker
11:44 AM bug #8246: TaxonNamePopupEditor can not be canceled
in contrast to the original assumption this issue has nothing to do with invalid fields. Andreas Kohlbecker
09:45 AM bug #8247 (New): Webservice redlist CSV Export broken
The drupal module "CDM CSV Export" is no longer working
Issues:
1. the module uses GET, the web service only ac...
Andreas Kohlbecker
08:32 AM bug #8231 (Feedback): Name relation non
What do you want me do to about this?
I understand that there are two problems:
1. The output of replaced synon...
Andreas Kohlbecker

04/23/2019

05:59 PM bug #7953: Book in BookSeries: incomplete titleCache misses series title
please can you handle this issue with high priority? It is quite important for phycobank since we are frequently havi... Andreas Kohlbecker
05:28 PM bug #8246 (Closed): TaxonNamePopupEditor can not be canceled
The attempt to cancel editing a TaxonNamePopupEditor with missing genus fails and ends up with corrupted form:
![]...
Andreas Kohlbecker
04:21 PM feature request #8245 (Closed): Improve representation of DescriptionElementBase.timeperiod
The formatting 2017-00-00 to 2018-00-00 is not nice. Having only a year or a year and a month but no day is a very co... Andreas Kohlbecker
04:19 PM feature request #3616 (Closed): Show DescriptionElementBase.timeperiod in Dataportals
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
>
> Can we still try to remove these trailing zeros (only for t...
Andreas Kohlbecker
04:15 PM bug #7106 (Closed): avoid factory.openSession() in CdmRepository
Andreas Kohlbecker
04:13 PM bug #8050 (Feedback): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
I cannot reproduce the problems mentioned in comment 12 and 13.
Andreas Kohlbecker
03:55 PM feature request #8173 (Closed): spring profile remoting enabled by default
remoting switch `-Dspring.profiles.active=remoting` removed from all server configurations and from documentation Andreas Kohlbecker
03:42 PM bug #8188 (Closed): Allow configuring hibernate properties via properties file
tested by running the selenide test class eu.etaxonomy.cdm.vaadin.ui.RegistrationUiTest Andreas Kohlbecker
01:08 PM bug #8217 (Closed): ToManyRelatedEntitiesComboboxSelect edit button not enabled
new ticket #8244 Andreas Kohlbecker
12:16 PM bug #8217 (Resolved): ToManyRelatedEntitiesComboboxSelect edit button not enabled
Andreas Kohlbecker
01:08 PM bug #8244 (New): Skip validation of ToManyRelatedEntitiesComboboxSelect when editor is read only
copied from #8217 Andreas Kohlbecker
12:22 PM task #7935 (Closed): Discuss new solution to establish the communication between submitter and curator
noting to add to this issue. The email based communication is a proper solution for the time being. Andreas Kohlbecker

04/16/2019

04:10 PM feature request #8009 (Rejected): Check if Nebula TextAssist can be used to select categorical data in CharacterMatrix
NatCombo already offers this functionality -> #8242 Patrick Plitzner
11:48 AM bug #8243 (Resolved): Cdm Cache uses a lot of disk space
Recently Tilo experienced a sudden system freeze when his main partition went from ~3GB free disk space to 100% full ... Patrick Plitzner

04/15/2019

04:20 PM feature request #8242 (Closed): Implement filtered combo boxes for state selection in CharacterMatrix
~~Right now the dropdown for categorical states in CharacterMatrix is not scrollable which is a problem for large sta... Patrick Plitzner

04/12/2019

01:07 PM task #7515 (Resolved): TypeDesignationStatusComparator to sort by vocabulary first and then by term order
Andreas Müller
01:06 PM bug #8223 (Resolved): Urgent TaxonNode wizard issues
Andreas Müller
12:58 PM feature request #7932: Implement subject resolver for CdmPreferences
This is mostly done but untested therefore move to 5.7 Andreas Müller
12:01 PM task #7935: Discuss new solution to establish the communication between submitter and curator
As plan B: E-Mail curation@phycobank.org is working now,
Currently most phycologists contact the curator by the pe...
Wolf-Henning Kusber
11:45 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title

Book in this series:
title: "Taxonomy - biogeography - diversity"
datePublished: "2012"
editor: "L...
Wolf-Henning Kusber
11:25 AM bug #7979 (Closed): Registration date and time, display
Test portal and Release Portal (checked 2019-04-12):
Displayed dates are correct.
Registrations made in Vaadin ar...
Wolf-Henning Kusber
10:51 AM bug #8090 (Closed): Reference editor: Label In proceedings in InProceedings missing
Wolf-Henning Kusber
10:33 AM feature request #8155: SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status

Agreed: if the basionym is existing this name should be chosen as default for the typified name field.
In general,...
Wolf-Henning Kusber

04/11/2019

05:54 PM bug #8065 (Resolved): HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table
Andreas Kohlbecker
05:54 PM bug #8099 (Resolved): Error saving name type designation editor due to problem in poupeditor context
Andreas Kohlbecker
05:51 PM bug #7690 (New): Adapt available typedesignation editors to name rank
Andreas Kohlbecker
05:48 PM feature request #8173 (Resolved): spring profile remoting enabled by default
needs to be reviewed Andreas Kohlbecker
05:45 PM bug #7106 (Resolved): avoid factory.openSession() in CdmRepository
this issue should be solved now Andreas Kohlbecker
05:45 PM bug #7106: avoid factory.openSession() in CdmRepository
changing the ticket subject since there is now a separate ticket for the DaoBase class: #8169 Andreas Kohlbecker
05:44 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Poposal: Make names (stored in the system) available [as new names as well as for existing names]. For genera, the au... Wolf-Henning Kusber
04:24 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Related to #8217
If a name without reference is in the dropdown list, the user is forced to add a reference.
This i...
Wolf-Henning Kusber
05:41 PM bug #8188 (Resolved): Allow configuring hibernate properties via properties file
this should be solved Andreas Kohlbecker
05:30 PM bug #7962 (Closed): PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more humane labels
works as expected Andreas Kohlbecker
05:28 PM bug #8189 (In Progress): Allow configuration of 'user.home' via the spring environment
now that the changes made for this ticket are no longer causing any problems I will do the next step: turning all spi... Andreas Kohlbecker
05:21 PM bug #8176 (Closed): WeaklyRelatedEntityCombobox is slow
The WeaklyRelatedEntityCombobox is no longer causing performance problems and edit as well create buttons are working... Andreas Kohlbecker
04:54 PM bug #8217 (Feedback): ToManyRelatedEntitiesComboboxSelect edit button not enabled
I consider this correct behavior but not user friendly. We should disable the vlaidation in case the editor is readon... Andreas Kohlbecker
04:01 PM bug #8217: ToManyRelatedEntitiesComboboxSelect edit button not enabled
Curator:
Test
Replaced synonym without reference. Warning, selection of an existing reference, save. Works
Submi...
Wolf-Henning Kusber
04:26 PM feature request #8241 (Closed): Rename FeatureTreeEditor to TermTreeEditor
This does not have to be done in the Java classes but in the UI Patrick Plitzner
04:18 PM bug #8225 (In Progress): Deleting one of two type designations removes both
this works now, but is not really nice. So we move it to next release. Katja Luther
12:57 PM bug #8225 (Feedback): Deleting one of two type designations removes both
the deleted typeDesignation is not removed, this problem also appears when both typedesignations are already persisted Katja Luther
12:27 PM bug #8225 (Resolved): Deleting one of two type designations removes both
Katja Luther wrote:
> tested on nightly:
>
> * create a new typeDesignation (a first one already exists)
> * del...
Patrick Plitzner
11:58 AM bug #8225 (Feedback): Deleting one of two type designations removes both
tested on nightly:
* create a new typeDesignation (a first one already exists)
* delete the first one
* the seco...
Katja Luther
03:22 PM bug #7963 (Closed): TaxonNamePopEditor: name part field visibility not correct for all ranks
new ticket: #8240 Wolf-Henning Kusber
03:19 PM bug #7963: TaxonNamePopEditor: name part field visibility not correct for all ranks
For rank "unknown rank" only the uninomial field is shown. Correct. Wolf-Henning Kusber
03:20 PM bug #8240 (New): TaxonNamePopEditor: name part field visibility not correct for all ranks (new)
I checked the complete list. With some ranks (mostly not relevant for PhycoBank, I have problems).
"species aggega...
Wolf-Henning Kusber
02:49 PM bug #8184 (In Progress): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
Andreas Kohlbecker
02:10 PM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
Testsystem 09 April 2019.
saving types not possible. See also problems with Safari/Mac.
Wolf-Henning Kusber
02:37 PM bug #8097 (Closed): Problem with inserting a section - inReference is "lost"
Andreas Kohlbecker
02:31 PM bug #8097: Problem with inserting a section - inReference is "lost"
Test:
bottom up: section in (select) article: works
bottom up: section in (select) book: works
top down: select ar...
Wolf-Henning Kusber
01:11 PM bug #8171 (Closed): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed
We can close this ticket as solved, since fixing this issue did not cause any side effect problems Andreas Kohlbecker
12:05 PM task #7515: TypeDesignationStatusComparator to sort by vocabulary first and then by term order
please have a look whether this solves the problem Katja Luther
12:01 PM bug #8088: Open taxon node wizard issues
the urgent issues are handled in #8223, the rest will be implemented in 5.7 Katja Luther
12:00 PM feature request #8058: Further issues for (local) preferences
the only missing issue is the height of the matching dialog, so I move this ticket to 5.7 Katja Luther
11:55 AM bug #8222 (Closed): Deleting a type designation from a name is directly persisted
tested on nightly:
* created new typeDesignation and save
* remove typeDesignation and close without saving
* th...
Katja Luther
11:53 AM bug #7541 (Closed): Insufficient rights lead to missing focus in name editor
the details view issues are now handled in #8239 Katja Luther
10:56 AM bug #7541: Insufficient rights lead to missing focus in name editor
So do I understand correctly that **this** ticket is only about setting the focus in name editor and not about the ot... Andreas Müller
10:54 AM bug #7541: Insufficient rights lead to missing focus in name editor
Katja Luther wrote:
> Andreas Müller wrote:
> > Hmm, can someone explain what the expected behavior is? To me it so...
Andreas Müller
11:50 AM feature request #8239 (New): Rights issues in TaxEditor
This should be a ticket to collect all rights issues in taxEditor.
* in Details View fields the user is not allowe...
Katja Luther
11:47 AM bug #8219 (Rejected): Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
I could not reproduce this bug in the test system. There where also no related error report in the mails or in Riot s... Andreas Kohlbecker
11:24 AM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
Andreas Müller wrote:
> What I do not understand is if already the select creates the wrong result how can hibernate...
Andreas Kohlbecker
09:44 AM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
What I do not understand is if already the select creates the wrong result how can hibernate (security) know that the... Andreas Müller
08:55 AM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
Andreas Müller wrote:
> Is the subselect necessary to reproduce the behavior in the above SQL statements. If not we ...
Andreas Kohlbecker
11:46 AM feature request #4028 (Closed): Distinguish Features and Characters
Andreas Müller
11:45 AM task #7414 (Closed): Delete mediaCreatedOld
Andreas Müller
11:44 AM feature request #7470 (Closed): Verbatim type designation information
Andreas Müller
11:44 AM feature request #3836 (Resolved): Implement modifiers and modifying text for Description Elements in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > now the modifier section is shown only if the feature has recommend...
Katja Luther
11:43 AM bug #7682 (Closed): Point.precision must not be 0 by default
Andreas Müller
11:43 AM feature request #7653 (Closed): [DISCUSS] Delete NameFacts => Result: no
Andreas Müller
11:42 AM bug #7772 (Closed): Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
Andreas Müller
11:42 AM bug #7683 (Closed): external links Audit table should allow uuid to be null
Andreas Müller
11:41 AM bug #7859 (Closed): Increase size of CdmPreference.value
Andreas Müller
11:41 AM bug #7857 (Closed): Update name relationship type representations and symmetrie
Andreas Müller
11:40 AM task #8118: Update MySQL drivers
how to information added to [[MySqlFaq]] Andreas Kohlbecker
10:05 AM task #8118: Update MySQL drivers
We should create a Wiki page for this information. Move to new milestone as this is not release critical. Andreas Müller
11:40 AM feature request #8012 (Closed): Add termType for Structure and Property
Andreas Müller
11:39 AM feature request #8019 (Closed): Add "Typification Notes", "Ortography" and "Etymology" to NameFeature vocabulary
Andreas Müller
11:37 AM feature request #8120 (Closed): Add structural and property modifiers
Andreas Müller
11:37 AM feature request #8142 (Closed): Representations have optional "plural" as additional field
Andreas Müller
11:35 AM feature request #8136 (Closed): Implement sources for type designations in TaxEditor
Andreas Müller
11:31 AM feature request #8136: Implement sources for type designations in TaxEditor
I can not close the ticket as long as #8017 is not closed. Katja Luther
11:30 AM feature request #8136 (Resolved): Implement sources for type designations in TaxEditor
Andreas Müller wrote:
> Maybe we shorten the "Status Reference Detail" to "Status Ref Detail" or back to "Reference ...
Katja Luther
10:46 AM feature request #8136: Implement sources for type designations in TaxEditor
Maybe we shorten the "Status Reference Detail" to "Status Ref Detail" or back to "Reference Detail" (maybe with a sma... Andreas Müller
10:43 AM feature request #8136: Implement sources for type designations in TaxEditor
Now lectotype references have more space for the labels then ordinary types:
![](picture499-1.png)
This does no...
Andreas Müller
10:10 AM feature request #8136: Implement sources for type designations in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > If Status is completely deleted the re...
Katja Luther
10:04 AM feature request #8136: Implement sources for type designations in TaxEditor
I just realized that the same problem exists e.g. for original sources. So it seems to be a general issue for lists, ... Andreas Müller
08:47 AM feature request #8136: Implement sources for type designations in TaxEditor
For selection the type designation you can basically select any empty space on the left or right side (see image)
...
Patrick Plitzner
11:34 AM feature request #8017 (Closed): TypeDesignations need sources additional to lectotypifcation sources
Andreas Müller
11:33 AM feature request #8124 (Closed): Activate Name Facts in Taxeditor
the ticket for the updating of bulkeditors is #8229, the rest is implemented and reviewed so I close this ticket. Katja Luther
11:30 AM bug #8200 (Closed): Changing title(cache) for factual data set not possible
Closing this ticket as the remaining issues are duplicated in #7865 Patrick Plitzner
09:16 AM bug #8200 (Feedback): Changing title(cache) for factual data set not possible
Katja Luther wrote:
> but as this is the general behaviour for titlecaches we may close this ticket? Because it work...
Andreas Müller
11:20 AM feature request #8146 (Closed): Adapt taxeditor UI to structure and property term type
Added #8146#note-30 to #8235
Created #8238 for #8146#note-31
Closing this ticket
Patrick Plitzner
09:57 AM feature request #8146: Adapt taxeditor UI to structure and property term type
All the rest seems to work and ticket can be closed then. Andreas Müller
09:56 AM feature request #8146 (Feedback): Adapt taxeditor UI to structure and property term type
Generally it should be possible to move a Character subtree to a Feature tree as Character is a subtype. But of cours... Andreas Müller
09:50 AM feature request #8146: Adapt taxeditor UI to structure and property term type
Why not using the term type in the label, e.g. instead of FeatureTree => Structure Tree. Then users must not think ab... Andreas Müller
11:19 AM feature request #8238 (Feedback): Allow interoperability between term trees
Copied from #8146:
Generally it should be possible to move a Character subtree to a Feature tree as Character is a...
Patrick Plitzner
11:06 AM feature request #7865 (Resolved): Remaining factual data view label issues
It has now be solved like this:
* TitleCache is protected -> \<old TitleCache\> - \<Move message\>
* TitleCache i...
Patrick Plitzner
09:27 AM feature request #7865 (Feedback): Remaining factual data view label issues
As mentioned in note-11 the solution for the problem is not so easy. First of all we should have a look how it was im... Andreas Müller
09:20 AM feature request #7865: Remaining factual data view label issues
Patrick Plitzner wrote:
> The titlecache issue is solved. Some other issues came up while fixing this ticket -> #823...
Andreas Müller
10:35 AM feature request #3616: Show DescriptionElementBase.timeperiod in Dataportals
Andreas Kohlbecker wrote:
> I suggest to close this ticket now, agreed?
What I really don't like in the current i...
Andreas Müller
10:31 AM bug #7904: DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
As release is urgent now I have to move again to next milestone Andreas Müller
10:31 AM bug #8190 (Closed): Default FeatureTree throws exception
For me it also seems to work Andreas Müller
10:16 AM bug #8233 (In Progress): [Follow up] Creating type duplicates
The fixes work as expected. A minor issue: as type status is a required field but Accession number etc are not we sho... Andreas Müller
10:11 AM feature request #6413 (Closed): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
As some of the most important issues from #8233 are solved in the meanwhile we can close this ticket and try to fully... Andreas Müller
 

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