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From 03/14/2019 to 04/12/2019

04/12/2019

02:48 PM Revision 12d50943 (taxeditor): Fix problem for characters with same name
Patrick Plitzner
02:46 PM Revision 78bd3b11 (taxeditor): Fix problem for characters with same name
Patrick Plitzner
01:07 PM task #7515 (Resolved): TypeDesignationStatusComparator to sort by vocabulary first and then by term order
Andreas Müller
01:06 PM bug #8223 (Resolved): Urgent TaxonNode wizard issues
Andreas Müller
12:58 PM feature request #7932: Implement subject resolver for CdmPreferences
This is mostly done but untested therefore move to 5.7 Andreas Müller
12:03 PM Revision 6042fefa (cdm-server): updating poms for 5.7.0-SNAPSHOT development
jenkins
12:01 PM task #7935: Discuss new solution to establish the communication between submitter and curator
As plan B: E-Mail curation@phycobank.org is working now,
Currently most phycologists contact the curator by the pe...
Wolf-Henning Kusber
11:46 AM Revision 8175edb9 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.6.0-SNAPSHOT
jenkins
11:46 AM Revision 855ef29e (cdm-webapp): updating poms for 5.7.0-SNAPSHOT development
jenkins
11:46 AM Revision d8f26902 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.7.0-SNAPSHOT
jenkins
11:45 AM Revision 4d7307cd (taxeditor): Updated version in pom / project files to taxeditor version : 5.7.0-SNAPSHOT and cdmlib version : 5.7.0-SNAPSHOT
jenkins
11:45 AM Revision 9ae093cd (taxeditor): Updated version in pom / project files to taxeditor version : 5.6.0 and cdmlib version : 5.6.0
jenkins
11:45 AM bug #7953: Book in BookSeries: incomplete titleCache misses series title

Book in this series:
title: "Taxonomy - biogeography - diversity"
datePublished: "2012"
editor: "L...
Wolf-Henning Kusber
11:43 AM Revision 70e662ca (cdm-vaadin): jenkins bumping cdmlib.version to 5.6.0-SNAPSHOT
jenkins
11:43 AM Revision ff028ba4 (cdm-vaadin): updating poms for 5.7.0-SNAPSHOT development
jenkins
11:43 AM Revision 17a45f4c (cdm-vaadin): updating poms for 5.6.0 branch with snapshot versions
jenkins
11:43 AM Revision 506877e2 (cdm-vaadin): jenkins bumping cdmlib.version to 5.7.0-SNAPSHOT
jenkins
11:43 AM Revision e0be41dc (cdm-dataportal): updating poms for 5.7.0-SNAPSHOT development
jenkins
11:40 AM Revision 0a72e5be (cdmlib): updating poms for 5.7.0-SNAPSHOT development
jenkins
11:25 AM bug #7979 (Closed): Registration date and time, display
Test portal and Release Portal (checked 2019-04-12):
Displayed dates are correct.
Registrations made in Vaadin ar...
Wolf-Henning Kusber
11:19 AM Revision 1a4fe38f (taxeditor): Expand character details view sections
Patrick Plitzner
10:51 AM bug #8090 (Closed): Reference editor: Label In proceedings in InProceedings missing
Wolf-Henning Kusber
10:33 AM feature request #8155: SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status

Agreed: if the basionym is existing this name should be chosen as default for the typified name field.
In general,...
Wolf-Henning Kusber

04/11/2019

05:54 PM bug #8065 (Resolved): HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table
Andreas Kohlbecker
05:54 PM bug #8099 (Resolved): Error saving name type designation editor due to problem in poupeditor context
Andreas Kohlbecker
05:51 PM bug #7690 (New): Adapt available typedesignation editors to name rank
Andreas Kohlbecker
05:48 PM feature request #8173 (Resolved): spring profile remoting enabled by default
needs to be reviewed Andreas Kohlbecker
05:45 PM bug #7106 (Resolved): avoid factory.openSession() in CdmRepository
this issue should be solved now Andreas Kohlbecker
05:45 PM bug #7106: avoid factory.openSession() in CdmRepository
changing the ticket subject since there is now a separate ticket for the DaoBase class: #8169 Andreas Kohlbecker
05:44 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Poposal: Make names (stored in the system) available [as new names as well as for existing names]. For genera, the au... Wolf-Henning Kusber
04:24 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Related to #8217
If a name without reference is in the dropdown list, the user is forced to add a reference.
This i...
Wolf-Henning Kusber
05:41 PM bug #8188 (Resolved): Allow configuring hibernate properties via properties file
this should be solved Andreas Kohlbecker
05:30 PM bug #7962 (Closed): PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more humane labels
works as expected Andreas Kohlbecker
05:28 PM bug #8189 (In Progress): Allow configuration of 'user.home' via the spring environment
now that the changes made for this ticket are no longer causing any problems I will do the next step: turning all spi... Andreas Kohlbecker
05:21 PM bug #8176 (Closed): WeaklyRelatedEntityCombobox is slow
The WeaklyRelatedEntityCombobox is no longer causing performance problems and edit as well create buttons are working... Andreas Kohlbecker
05:17 PM Revision 521f90aa (cdm-vaadin): ref #8176 fixing refreshing of specificEpithet after editing the name via the WeaklyRelatedEntityCombobox edit button
Andreas Kohlbecker
04:54 PM bug #8217 (Feedback): ToManyRelatedEntitiesComboboxSelect edit button not enabled
I consider this correct behavior but not user friendly. We should disable the vlaidation in case the editor is readon... Andreas Kohlbecker
04:01 PM bug #8217: ToManyRelatedEntitiesComboboxSelect edit button not enabled
Curator:
Test
Replaced synonym without reference. Warning, selection of an existing reference, save. Works
Submi...
Wolf-Henning Kusber
04:39 PM Revision 572b86b7 (cdm-vaadin): ref #8176 fixing edit button functionality in WeaklyRelatedEntityCombobox
Andreas Kohlbecker
04:26 PM feature request #8241 (Closed): Rename FeatureTreeEditor to TermTreeEditor
This does not have to be done in the Java classes but in the UI Patrick Plitzner
04:18 PM bug #8225 (In Progress): Deleting one of two type designations removes both
this works now, but is not really nice. So we move it to next release. Katja Luther
12:57 PM bug #8225 (Feedback): Deleting one of two type designations removes both
the deleted typeDesignation is not removed, this problem also appears when both typedesignations are already persisted Katja Luther
12:27 PM bug #8225 (Resolved): Deleting one of two type designations removes both
Katja Luther wrote:
> tested on nightly:
>
> * create a new typeDesignation (a first one already exists)
> * del...
Patrick Plitzner
11:58 AM bug #8225 (Feedback): Deleting one of two type designations removes both
tested on nightly:
* create a new typeDesignation (a first one already exists)
* delete the first one
* the seco...
Katja Luther
03:22 PM bug #7963 (Closed): TaxonNamePopEditor: name part field visibility not correct for all ranks
new ticket: #8240 Wolf-Henning Kusber
03:19 PM bug #7963: TaxonNamePopEditor: name part field visibility not correct for all ranks
For rank "unknown rank" only the uninomial field is shown. Correct. Wolf-Henning Kusber
03:20 PM bug #8240 (New): TaxonNamePopEditor: name part field visibility not correct for all ranks (new)
I checked the complete list. With some ranks (mostly not relevant for PhycoBank, I have problems).
"species aggega...
Wolf-Henning Kusber
02:49 PM bug #8184 (In Progress): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
Andreas Kohlbecker
02:10 PM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
Testsystem 09 April 2019.
saving types not possible. See also problems with Safari/Mac.
Wolf-Henning Kusber
02:37 PM bug #8097 (Closed): Problem with inserting a section - inReference is "lost"
Andreas Kohlbecker
02:31 PM bug #8097: Problem with inserting a section - inReference is "lost"
Test:
bottom up: section in (select) article: works
bottom up: section in (select) book: works
top down: select ar...
Wolf-Henning Kusber
01:45 PM Revision 04f8f2b1 (taxeditor): ref #3836: fix modifier section for stateData/statistical measurement
Katja Luther
01:29 PM Revision a970aef8 (taxeditor): ref #8225 Temporary fix - ask for saving before removing a designation
Patrick Plitzner
01:19 PM Revision 75ee3818 (taxeditor): ref #8225 Remove deleted type designation from details view
Patrick Plitzner
01:11 PM bug #8171 (Closed): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed
We can close this ticket as solved, since fixing this issue did not cause any side effect problems Andreas Kohlbecker
12:26 PM Revision 9d38e970 (taxeditor): ref #8225 Fix deletion of not persisted type designations
Patrick Plitzner
12:05 PM task #7515: TypeDesignationStatusComparator to sort by vocabulary first and then by term order
please have a look whether this solves the problem Katja Luther
12:01 PM bug #8088: Open taxon node wizard issues
the urgent issues are handled in #8223, the rest will be implemented in 5.7 Katja Luther
12:00 PM feature request #8058: Further issues for (local) preferences
the only missing issue is the height of the matching dialog, so I move this ticket to 5.7 Katja Luther
11:55 AM bug #8222 (Closed): Deleting a type designation from a name is directly persisted
tested on nightly:
* created new typeDesignation and save
* remove typeDesignation and close without saving
* th...
Katja Luther
11:53 AM bug #7541 (Closed): Insufficient rights lead to missing focus in name editor
the details view issues are now handled in #8239 Katja Luther
10:56 AM bug #7541: Insufficient rights lead to missing focus in name editor
So do I understand correctly that **this** ticket is only about setting the focus in name editor and not about the ot... Andreas Müller
10:54 AM bug #7541: Insufficient rights lead to missing focus in name editor
Katja Luther wrote:
> Andreas Müller wrote:
> > Hmm, can someone explain what the expected behavior is? To me it so...
Andreas Müller
11:50 AM feature request #8239 (New): Rights issues in TaxEditor
This should be a ticket to collect all rights issues in taxEditor.
* in Details View fields the user is not allowe...
Katja Luther
11:47 AM bug #8219 (Rejected): Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
I could not reproduce this bug in the test system. There where also no related error report in the mails or in Riot s... Andreas Kohlbecker
11:24 AM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
Andreas Müller wrote:
> What I do not understand is if already the select creates the wrong result how can hibernate...
Andreas Kohlbecker
09:44 AM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
What I do not understand is if already the select creates the wrong result how can hibernate (security) know that the... Andreas Müller
08:55 AM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
Andreas Müller wrote:
> Is the subselect necessary to reproduce the behavior in the above SQL statements. If not we ...
Andreas Kohlbecker
11:46 AM feature request #4028 (Closed): Distinguish Features and Characters
Andreas Müller
11:45 AM task #7414 (Closed): Delete mediaCreatedOld
Andreas Müller
11:44 AM feature request #7470 (Closed): Verbatim type designation information
Andreas Müller
11:44 AM feature request #3836 (Resolved): Implement modifiers and modifying text for Description Elements in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > now the modifier section is shown only if the feature has recommend...
Katja Luther
11:43 AM bug #7682 (Closed): Point.precision must not be 0 by default
Andreas Müller
11:43 AM Revision 7ca8076a (taxeditor): ref #3836: show always freetext modifier field
Katja Luther
11:43 AM feature request #7653 (Closed): [DISCUSS] Delete NameFacts => Result: no
Andreas Müller
11:42 AM bug #7772 (Closed): Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
Andreas Müller
11:42 AM bug #7683 (Closed): external links Audit table should allow uuid to be null
Andreas Müller
11:41 AM bug #7859 (Closed): Increase size of CdmPreference.value
Andreas Müller
11:41 AM bug #7857 (Closed): Update name relationship type representations and symmetrie
Andreas Müller
11:40 AM task #8118: Update MySQL drivers
how to information added to [[MySqlFaq]] Andreas Kohlbecker
10:05 AM task #8118: Update MySQL drivers
We should create a Wiki page for this information. Move to new milestone as this is not release critical. Andreas Müller
11:40 AM feature request #8012 (Closed): Add termType for Structure and Property
Andreas Müller
11:39 AM feature request #8019 (Closed): Add "Typification Notes", "Ortography" and "Etymology" to NameFeature vocabulary
Andreas Müller
11:37 AM feature request #8120 (Closed): Add structural and property modifiers
Andreas Müller
11:37 AM feature request #8142 (Closed): Representations have optional "plural" as additional field
Andreas Müller
11:35 AM feature request #8136 (Closed): Implement sources for type designations in TaxEditor
Andreas Müller
11:31 AM feature request #8136: Implement sources for type designations in TaxEditor
I can not close the ticket as long as #8017 is not closed. Katja Luther
11:30 AM feature request #8136 (Resolved): Implement sources for type designations in TaxEditor
Andreas Müller wrote:
> Maybe we shorten the "Status Reference Detail" to "Status Ref Detail" or back to "Reference ...
Katja Luther
10:46 AM feature request #8136: Implement sources for type designations in TaxEditor
Maybe we shorten the "Status Reference Detail" to "Status Ref Detail" or back to "Reference Detail" (maybe with a sma... Andreas Müller
10:43 AM feature request #8136: Implement sources for type designations in TaxEditor
Now lectotype references have more space for the labels then ordinary types:
![](picture499-1.png)
This does no...
Andreas Müller
10:10 AM feature request #8136: Implement sources for type designations in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > If Status is completely deleted the re...
Katja Luther
10:04 AM feature request #8136: Implement sources for type designations in TaxEditor
I just realized that the same problem exists e.g. for original sources. So it seems to be a general issue for lists, ... Andreas Müller
08:47 AM feature request #8136: Implement sources for type designations in TaxEditor
For selection the type designation you can basically select any empty space on the left or right side (see image)
...
Patrick Plitzner
11:34 AM feature request #8017 (Closed): TypeDesignations need sources additional to lectotypifcation sources
Andreas Müller
11:33 AM feature request #8124 (Closed): Activate Name Facts in Taxeditor
the ticket for the updating of bulkeditors is #8229, the rest is implemented and reviewed so I close this ticket. Katja Luther
11:30 AM bug #8200 (Closed): Changing title(cache) for factual data set not possible
Closing this ticket as the remaining issues are duplicated in #7865 Patrick Plitzner
09:16 AM bug #8200 (Feedback): Changing title(cache) for factual data set not possible
Katja Luther wrote:
> but as this is the general behaviour for titlecaches we may close this ticket? Because it work...
Andreas Müller
11:20 AM feature request #8146 (Closed): Adapt taxeditor UI to structure and property term type
Added #8146#note-30 to #8235
Created #8238 for #8146#note-31
Closing this ticket
Patrick Plitzner
09:57 AM feature request #8146: Adapt taxeditor UI to structure and property term type
All the rest seems to work and ticket can be closed then. Andreas Müller
09:56 AM feature request #8146 (Feedback): Adapt taxeditor UI to structure and property term type
Generally it should be possible to move a Character subtree to a Feature tree as Character is a subtype. But of cours... Andreas Müller
09:50 AM feature request #8146: Adapt taxeditor UI to structure and property term type
Why not using the term type in the label, e.g. instead of FeatureTree => Structure Tree. Then users must not think ab... Andreas Müller
11:19 AM feature request #8238 (Feedback): Allow interoperability between term trees
Copied from #8146:
Generally it should be possible to move a Character subtree to a Feature tree as Character is a...
Patrick Plitzner
11:10 AM Revision 9e150d47 (taxeditor): ref #8136: shorter reference detail label
Katja Luther
11:06 AM feature request #7865 (Resolved): Remaining factual data view label issues
It has now be solved like this:
* TitleCache is protected -> \<old TitleCache\> - \<Move message\>
* TitleCache i...
Patrick Plitzner
09:27 AM feature request #7865 (Feedback): Remaining factual data view label issues
As mentioned in note-11 the solution for the problem is not so easy. First of all we should have a look how it was im... Andreas Müller
09:20 AM feature request #7865: Remaining factual data view label issues
Patrick Plitzner wrote:
> The titlecache issue is solved. Some other issues came up while fixing this ticket -> #823...
Andreas Müller
11:00 AM Revision 0abb2f54 (cdmlib): ref #7865 Add move message to protected title caches
Patrick Plitzner
10:52 AM Revision d446db04 (taxeditor): ref #8223: check success before try to open new taxon
Katja Luther
10:35 AM feature request #3616: Show DescriptionElementBase.timeperiod in Dataportals
Andreas Kohlbecker wrote:
> I suggest to close this ticket now, agreed?
What I really don't like in the current i...
Andreas Müller
10:32 AM Revision 03a51f97 (taxeditor): ref #7865 Continue move operation after saving
Patrick Plitzner
10:31 AM bug #7904: DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
As release is urgent now I have to move again to next milestone Andreas Müller
10:31 AM Revision 0831d056 (cdmlib): ref #7865 Fix description label generation when moving
Patrick Plitzner
10:31 AM bug #8190 (Closed): Default FeatureTree throws exception
For me it also seems to work Andreas Müller
10:16 AM bug #8233 (In Progress): [Follow up] Creating type duplicates
The fixes work as expected. A minor issue: as type status is a required field but Accession number etc are not we sho... Andreas Müller
10:11 AM feature request #6413 (Closed): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
As some of the most important issues from #8233 are solved in the meanwhile we can close this ticket and try to fully... Andreas Müller
10:09 AM Revision e5d18094 (taxeditor): ref #8136: move not designated checkbox
Katja Luther
09:24 AM Revision c3cad351 (taxeditor): ref #8136: label issues
Katja Luther

04/10/2019

10:20 PM feature request #8136: Implement sources for type designations in TaxEditor
So not very nice (as selection is crucial for entering sources, but it is true that it always works in the area below... Andreas Müller
10:16 PM feature request #8136: Implement sources for type designations in TaxEditor
Patrick Plitzner wrote:
> > Clicking somewhere behind the type combo or the 'Not deisgnated' checkbox activates the ...
Andreas Müller
10:05 PM feature request #8136: Implement sources for type designations in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > If Status is completely deleted the reference is not deleted but sh...
Andreas Müller
06:12 PM feature request #8136: Implement sources for type designations in TaxEditor
> Clicking somewhere behind the type combo or the 'Not deisgnated' checkbox activates the selection of the type desig... Patrick Plitzner
02:56 PM feature request #8136: Implement sources for type designations in TaxEditor
Andreas Müller wrote:
> ??
this was a question for Patrick. See the description in node#33
Katja Luther
02:53 PM feature request #8136: Implement sources for type designations in TaxEditor
?? Andreas Müller
09:55 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
Andreas Kohlbecker wrote:
> reopening since I seem to remember that this bug has been originally reported by Heba wh...
Andreas Müller
09:54 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
Is the subselect necessary to reproduce the behavior in the above SQL statements. If not we should tear down to a sin... Andreas Müller
06:33 PM bug #8219 (In Progress): Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
reopening since I seem to remember that this bug has been originally reported by Heba when working on the test or pro... Andreas Kohlbecker
06:16 PM bug #8219 (Rejected): Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
I filed a bug report in the Oracle bug tracker:
https://bugs.mysql.com/bug.php?id=94973
since we can not do a...
Andreas Kohlbecker
05:49 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
further reduced the query reproducing the bug to
~~~sql
SELECT
this_.nomenclaturallyRelevant,
this_.externalL...
Andreas Kohlbecker
05:41 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
This could be related to the mysql bug https://bugs.mysql.com/bug.php?id=94795 Andreas Kohlbecker
05:36 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
The above bug seems only to occur on my laptop which is running
mysqld Ver 5.7.25-0ubuntu0.16.04.2 for Linux on x...
Andreas Kohlbecker
05:18 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
The above described effect can be more isolated with the following queries:
Correct results:
~~~sql
SELECT
t...
Andreas Kohlbecker
04:57 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
I now pinned down the cause to the `.IIdentifiableEntityService.findByTitleWithRestrictions(..)` methods.
What is ...
Andreas Kohlbecker
06:15 PM Revision e978c93a (taxeditor): ref #8233 Add barcode and catalog number to clone type functionality
Patrick Plitzner
05:53 PM feature request #8044: Add "Move to..." menu to term editor
Moving to 5.7 where it can be reviewed when set to non-experimental Patrick Plitzner
05:52 PM task #8130: Check if related feature data is cleared when supported facts type is changed
moved to 5.7 Patrick Plitzner
05:51 PM feature request #8135: Implement verbatim type information in TaxEditor
Moving to 5.7 Patrick Plitzner
05:49 PM bug #8233 (Resolved): [Follow up] Creating type duplicates
@Andreas: Could you review the fixed issues and, if everything works, move this ticket to 5.7 again? Patrick Plitzner
07:50 AM bug #8233 (In Progress): [Follow up] Creating type duplicates
remaining issues from #6413:
* ~~We should change order, first collection, then accession number.~~
* Also the st...
Patrick Plitzner
05:41 PM Revision 59f0afe5 (taxeditor): ref #8233 Add barcode and catalog number to clone type functionality
Patrick Plitzner
05:41 PM Revision 3262af01 (cdmlib): ref #8233 Add barcode and catalog number to clone type service method
Patrick Plitzner
05:31 PM Revision 06122990 (taxeditor): ref #8233 Ask for saving before cloning type designation
Patrick Plitzner
05:31 PM Revision 093b7fca (taxeditor): Fix potential NPE
Patrick Plitzner
05:31 PM Revision d46d8905 (taxeditor): ref #8233 Do not evaluate accession number for "Finish" button
Patrick Plitzner
05:31 PM Revision 62b9b524 (taxeditor): ref #8233 Move collection above accession number
Patrick Plitzner
03:58 PM feature request #8096 (Closed): Implement CacheUpdater as long running task with correct progress monitoring
Moved null/empty cache issues to new ticket #8237.
All the rest works or has new ticket so we can close this one.
Andreas Müller
03:57 PM bug #8237 (New): Cache updating sometimes does not work as expected for references and names
... and maybe other classes. Details can be found in #8096#note-20 and previous comments Andreas Müller
03:52 PM feature request #8124 (Feedback): Activate Name Facts in Taxeditor
Can you please link the bulk editor tickets?
The switching between 2 bulk editors with same name seems to work now...
Andreas Müller
03:45 PM feature request #3836 (Feedback): Implement modifiers and modifying text for Description Elements in TaxEditor
Katja Luther wrote:
> now the modifier section is shown only if the feature has recommended modifier voc, so it is h...
Andreas Müller
03:43 PM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
The discussion on recommended modifiers I moved to #8236. Andreas Müller
12:04 PM feature request #3836 (Resolved): Implement modifiers and modifying text for Description Elements in TaxEditor
Katja Luther
03:41 PM feature request #8236 (New): [DISCUSS] Should recommended modifiers also hold for DescriptionElements
Currently they are only available for features that support categorical or quantitative data. Here it triggers the mo... Andreas Müller
03:33 PM bug #8211 (Closed): Trigger new search when clicking on identifier search
now it works Andreas Müller
02:42 PM Revision 36632b22 (taxeditor): ref #8223: disable name/taxon if existing taxon/name is selected
Katja Luther
02:21 PM bug #8223 (In Progress): Urgent TaxonNode wizard issues
Katja Luther
01:48 PM bug #8228 (Closed): refresh of details for same object in different bulk editors does not work
I tested on nightly/rem_conf_am:
* I searched in the taxon bulk editor with the same search string
* I selected t...
Patrick Plitzner
01:17 PM bug #8228: refresh of details for same object in different bulk editors does not work
Patrick Plitzner wrote:
> Shouldn't bulk editor only open as singletons? What is the use case of having the same obj...
Katja Luther
01:09 PM bug #8228 (Feedback): refresh of details for same object in different bulk editors does not work
Shouldn't bulk editor only open as singletons? What is the use case of having the same object selected in two differe... Patrick Plitzner
12:11 PM bug #8228: refresh of details for same object in different bulk editors does not work
please review. Katja Luther
01:39 PM bug #8225 (Resolved): Deleting one of two type designations removes both
This is fixed by fixing #8222.
I already tested on nightly.
Patrick Plitzner
01:35 PM bug #8234 (Closed): Move description elements issues
tested on nightly. Works as expected Patrick Plitzner
12:12 PM bug #8234: Move description elements issues
works fine.
waiting for the nightly build to test there again
Patrick Plitzner
11:37 AM bug #8234: Move description elements issues
moving descriptions is solved, too.
I reviewed the 2. task and added the removing of the description elements in e...
Katja Luther
10:25 AM bug #8234 (Resolved): Move description elements issues
Applied in changeset commit:taxeditor|dc4dc742793f5823f61decb5411f46e9b7a66a05. Katja Luther
09:15 AM bug #8234: Move description elements issues
Moving to unassigned milestone because the critical issue (not removing the description element when moving it to ano... Patrick Plitzner
09:03 AM bug #8234 (Closed): Move description elements issues
1. ~~Moving description elements is only executed after saving while moving the whole descriptions is executed immedi... Patrick Plitzner
01:33 PM Revision ee8978f6 (cdmlib): Revert "ref #7865 Fix titleCache generation when moving taxon descriptions"
This reverts commit 48c401d490b010f21c5e6718263236b99a12d3cb. Patrick Plitzner
01:04 PM feature request #8146: Adapt taxeditor UI to structure and property term type
Katja Luther wrote:
> Patrick Plitzner wrote:
> > I added the term type for feature trees to the details view. Is t...
Patrick Plitzner
12:53 PM feature request #8146: Adapt taxeditor UI to structure and property term type
Patrick Plitzner wrote:
> I added the term type for feature trees to the details view. Is this ok?
> We may think a...
Katja Luther
12:51 PM feature request #8146 (Resolved): Adapt taxeditor UI to structure and property term type
Katja Luther wrote:
> Patrick Plitzner wrote:
> > I added the term type for feature trees to the details view. Is t...
Patrick Plitzner
12:07 PM feature request #8146 (Feedback): Adapt taxeditor UI to structure and property term type
Patrick Plitzner wrote:
> I added the term type for feature trees to the details view. Is this ok?
> We may think a...
Katja Luther
07:59 AM feature request #8146 (Resolved): Adapt taxeditor UI to structure and property term type
I added the term type for feature trees to the details view. Is this ok?
We may think about further options in the n...
Patrick Plitzner
01:04 PM feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
Copied from #8146:
~~We could add the termtype to the label of term trees and terms and maybe make it toggleable i...
Patrick Plitzner
12:51 PM Revision b2b10e70 (taxeditor): ref #8146 move term type to top in details view
Patrick Plitzner
12:34 PM bug #8222 (Resolved): Deleting a type designation from a name is directly persisted
Now type designations are deleted via operations which are executed when saving the name editor. Patrick Plitzner
12:33 PM Revision d12aec9d (taxeditor): ref #8222 Delete type designations via operations
Patrick Plitzner
12:32 PM Revision 864b7020 (taxeditor): ref #8222 Fix potential NPE + cleanup
Patrick Plitzner
12:32 PM Revision b6609b9d (taxeditor): ref #8222 Add interface method for operation based editors
Patrick Plitzner
12:22 PM feature request #5873: Implement rights&roles for TaxEditor distribution editor
actually the distribution editor can be opened but the save throws a permission denied exception.
* We need a che...
Katja Luther
11:25 AM Revision fc3c16d6 (taxeditor): ref #8234: update editor after removing description element
Katja Luther
11:13 AM Revision 3ce70d3c (taxeditor): ref #8234:avoid NPE
Katja Luther
10:25 AM Revision dc4dc742 (taxeditor): fix #8234: moveDescriptionOperation should be executed while saving
Katja Luther
09:14 AM Revision 2e789748 (cdmlib): ref #8234 Remove description element when moving it
Patrick Plitzner
09:05 AM feature request #7865 (Resolved): Remaining factual data view label issues
The titlecache issue is solved. Some other issues came up while fixing this ticket -> #8234 Patrick Plitzner
09:02 AM Revision 48c401d4 (cdmlib): ref #7865 Fix titleCache generation when moving taxon descriptions
Patrick Plitzner
09:01 AM Revision 61100aa0 (taxeditor): ref #7865 Change method signature for checking for dirty taxa editors
Patrick Plitzner
07:59 AM Revision 705a9fe6 (taxeditor): ref #8146 Show term type of term trees in details view
Patrick Plitzner
07:52 AM feature request #6413 (Resolved): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
I created a new ticket for the remaining issues. Can we close this ticket now? -> #8233 Patrick Plitzner

04/09/2019

02:37 PM bug #7541: Insufficient rights lead to missing focus in name editor
Andreas Müller wrote:
> Hmm, can someone explain what the expected behavior is? To me it sounds strange that the nam...
Katja Luther
01:58 PM Revision 45f85b39 (taxeditor): ref #8228: fix NPE
Katja Luther
01:34 PM Revision 68d759c3 (taxeditor): ref #8124: remaining issues for name facts (protologue filter)
Katja Luther
01:27 PM Revision 3154c930 (taxeditor): Adapt to service layer change
Patrick Plitzner
01:26 PM Revision 92283763 (cdmlib): Convert more service methods to only use UUID
- fix creation service method Patrick Plitzner
12:49 PM Revision e64a46d1 (cdmlib): Convert service methods to only use UUID
Patrick Plitzner
12:42 PM feature request #8136: Implement sources for type designations in TaxEditor
Do you have an idea how to improve the selection? Katja Luther
12:19 PM Revision 77658c00 (taxeditor): ref #3836: minor
Katja Luther
12:13 PM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
now the modifier section is shown only if the feature has recommended modifier voc, so it is hided for all features i... Katja Luther
12:13 PM Revision aef87bc3 (taxeditor): ref #3836: minor
Katja Luther
12:07 PM feature request #8096 (Resolved): Implement CacheUpdater as long running task with correct progress monitoring
the two colons are fixed and for a better result there is a new ticket. Katja Luther
11:09 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
Andreas Müller wrote:
> If running on multiple classes the update result returns the total number of updated objects...
Katja Luther
11:07 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
Andreas Müller wrote:
> Katja Luther wrote:
> > the problem for references is that if cacheStrategy.getFullAbbrevTi...
Katja Luther
12:05 PM Revision 4624cd0d (taxeditor): ref #8096: remove doubled colon
Katja Luther
11:20 AM feature request #8124 (Resolved): Activate Name Facts in Taxeditor
the issues mentioned above are fixed and for the bulk editor issue a new ticket is created. So I close this ticket. Katja Luther
11:17 AM feature request #8124: Activate Name Facts in Taxeditor
Andreas Müller wrote:
> It would be nice to have a separate label to point out that we are working on name level, no...
Katja Luther
09:25 AM feature request #8124: Activate Name Facts in Taxeditor
Katja Luther wrote:
> Andreas Müller wrote:
> > In bulk editor there are 2 strange behaviors which are maybe more b...
Katja Luther
09:12 AM feature request #8124: Activate Name Facts in Taxeditor
Andreas Müller wrote:
> In bulk editor there are 2 strange behaviors which are maybe more bulk editor related then n...
Katja Luther
11:11 AM feature request #8232 (New): Show updated objects of cache updater separately
Currently, the result of the cache updater is shown as one number but should be separated by the different kind of ob... Katja Luther
10:59 AM bug #8231 (Worksforme): Name relation non
Registration Id: http://phycobank.org/101367
Eunotia kurtkrammeri Kulikovskiy, Lange-Bert., Genkal & Witkowski,
[...
Wolf-Henning Kusber
10:36 AM Revision 5fcf8d0f (taxeditor): ref #8124: change label for name facts
Katja Luther
10:16 AM Revision 5ce89578 (taxeditor): ref #8124: do not show move description(element) menu item for name facts
Katja Luther
10:09 AM feature request #8230 (Closed): NameTypePopupEditor: genus selectable as the name type for higher ranks
If typified name rank higher than genus, allow genus to be selected as the name type.
[currently only species are ...
Wolf-Henning Kusber
09:53 AM Revision 9a7abbee (taxeditor): refresh details when changing concept type
Katja Luther
09:36 AM bug #8229 (Closed): reload of the bulkeditor does not work correctly
running a new search does not refresh the objects correctly. The bulk editor needs to be closed and reopened. Katja Luther
09:34 AM bug #8228 (Resolved): refresh of details for same object in different bulk editors does not work
this can be fixed with an additional check for the identity of the selection providing part and the activePart, when ... Katja Luther
09:32 AM bug #8228 (Closed): refresh of details for same object in different bulk editors does not work
opening two bulk editors and set the focus on the same objects. When switching between the two bulk editors does not ... Katja Luther
09:33 AM Revision 233fc0af (taxeditor): ref #8228: fix refresh in details view
Katja Luther
08:58 AM Revision 5f352a56 (taxeditor): ref #3836: show modifier part only if recommended modifier voc exist
Katja Luther
08:50 AM Revision 6ec2be5e (cdmlib): ref #8124: adapt TaxonNameDescriptionDefaultCacheStrategy
Katja Luther

04/08/2019

06:55 PM bug #8211 (Resolved): Trigger new search when clicking on identifier search
Andreas Müller
06:53 PM feature request #7428 (Closed): Open issues for updating open data while subtree is updated
I tested with publish flag. It also worked for both name editor and bulk editor. Andreas Müller
06:40 PM bug #7541 (Feedback): Insufficient rights lead to missing focus in name editor
Hmm, can someone explain what the expected behavior is? To me it sounds strange that the name editor is not editable ... Andreas Müller
06:10 PM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
Katja Luther wrote:
> the problem for references is that if cacheStrategy.getFullAbbrevTitleString(this) returns nul...
Andreas Müller
05:50 PM feature request #8096 (Feedback): Implement CacheUpdater as long running task with correct progress monitoring
If running on multiple classes the update result returns the total number of updated objects. Better we had them sepa... Andreas Müller
05:48 PM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
Katja Luther wrote:
> Andreas Müller wrote:
> > When running on references (in rem_conf_am) I only get no task show...
Andreas Müller
10:36 AM feature request #8096 (Resolved): Implement CacheUpdater as long running task with correct progress monitoring
there are problems with objects having a null titleCache because they get a new titlecache while saving.
I think we...
Katja Luther
05:37 PM feature request #8124: Activate Name Facts in Taxeditor
In bulk editor there are 2 strange behaviors which are may be more bulk editor related then name facts related.
If...
Andreas Müller
05:25 PM feature request #8124 (Feedback): Activate Name Facts in Taxeditor
I wonder if we should explicitly remove "Protologue" from the feature list. Protologues will soon be handled differen... Andreas Müller
05:23 PM feature request #8124: Activate Name Facts in Taxeditor
It would be nice to have a separate label to point out that we are working on name level, not taxon level now. E.g Na... Andreas Müller
05:19 PM feature request #8124: Activate Name Facts in Taxeditor
When entering via NameDetailsView and name selection the facts view still contains menu element "Move fact data set t... Andreas Müller
05:19 PM bug #8227: PhycoBank UI and Safari
TypeSpecimenEditor
Fehler: "1 field incomplete or invalid"
Mouse over beim Feld Specimen (das als ausgewählt richti...
Wolf-Henning Kusber
04:58 PM bug #8227 (Worksforme): PhycoBank UI and Safari
Release-Version als "Curator" verwendet (8 April 2019)
OS 10.11.6 mit Safari V 11.1.2
Login, logout, List Funkt...
Wolf-Henning Kusber
04:53 PM bug #8111 (Closed): User selection dialog for groups does not filter out existing users
seems to work now Andreas Müller
03:03 PM bug #8111 (Resolved): User selection dialog for groups does not filter out existing users
Andreas Müller wrote:
> Deleting users from group does not work (after reload it is still there)
sorry missed to ...
Katja Luther
02:19 PM bug #8111 (Feedback): User selection dialog for groups does not filter out existing users
Deleting users from group does not work (after reload it is still there) Andreas Müller
11:49 AM bug #8111: User selection dialog for groups does not filter out existing users
The problem is solved by mergeing the users added or deleted to a group while saving the bulk editor model.
please r...
Katja Luther
11:48 AM bug #8111 (Resolved): User selection dialog for groups does not filter out existing users
Applied in changeset commit:taxeditor|92749440c55d13272b4d45fee634d44c0db26dc0. Katja Luther
03:55 PM feature request #3836 (Feedback): Implement modifiers and modifying text for Description Elements in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > Only the recommended modifiers should be shown for the given featur...
Andreas Müller
03:28 PM feature request #3836 (Resolved): Implement modifiers and modifying text for Description Elements in TaxEditor
for description elements only the recommended modifiers are shown. configurability is moved to a new ticket. Katja Luther
03:26 PM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
Andreas Müller wrote:
> We may also discuss if the modifiers should only be shown if the recommended modifier enumer...
Katja Luther
02:51 PM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
Andreas Müller wrote:
> Only the recommended modifiers should be shown for the given feature (Feature.recommendedMod...
Katja Luther
02:12 PM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
We may also discuss if the modifiers should only be shown if the recommended modifier enumeration is not empty.
Al...
Andreas Müller
02:10 PM feature request #3836 (Feedback): Implement modifiers and modifying text for Description Elements in TaxEditor
Only the recommended modifiers should be shown for the given feature (Feature.recommendedModifierEnumeration) - sorry... Andreas Müller
03:39 PM feature request #8136: Implement sources for type designations in TaxEditor
Andreas Müller wrote:
> After choosing a specimen for the type designation it is sometimes impossible to select the ...
Katja Luther
01:46 PM feature request #8136: Implement sources for type designations in TaxEditor
Andreas Müller wrote:
> If Status is completely deleted the reference is not deleted but should (similar to choosing...
Katja Luther
01:34 PM feature request #8136: Implement sources for type designations in TaxEditor
Andreas Müller wrote:
> When having 2 type designations and the second one is not yet saved and deleting the second ...
Katja Luther
12:54 PM feature request #8136: Implement sources for type designations in TaxEditor
When having 2 type designations and the second one is not yet saved and deleting the second one both type designation... Andreas Müller
12:50 PM feature request #8136: Implement sources for type designations in TaxEditor
After choosing a specimen for the type designation it is sometimes impossible to select the type designation to show ... Andreas Müller
12:42 PM feature request #8136 (Feedback): Implement sources for type designations in TaxEditor
If Status is completely deleted the reference is not deleted but should (similar to choosing e.g. holotype) I guess.
...
Andreas Müller
03:36 PM feature request #8226: make modifiers for description elements configurable
copied from #3836
We may also discuss if the modifiers should only be shown if the recommended modifier enumeratio...
Andreas Müller
03:25 PM feature request #8226 (Closed): make modifiers for description elements configurable
Katja Luther
03:30 PM bug #8200 (Resolved): Changing title(cache) for factual data set not possible
but as this is the general behaviour for titlecaches we may close this ticket? Because it works like titleCaches in a... Katja Luther
03:24 PM bug #8225: Deleting one of two type designations removes both
Patrick will fix ticket #8222, I think this will solve this problem, too. Because remove of a type designation is don... Katja Luther
03:04 PM bug #8225: Deleting one of two type designations removes both
This needs to be fixed before release Andreas Müller
01:34 PM bug #8225 (Closed): Deleting one of two type designations removes both
When having 2 type designations and the second one is not yet saved and deleting the second one both type designation... Katja Luther
03:18 PM Revision 77d90448 (taxeditor): ref #3836: add only recommended modifiers to modifier combo
Katja Luther
03:02 PM Revision ea46d0e4 (taxeditor): ref #8111: handle event when removing user in group
Katja Luther
03:01 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
If 2 existing type designations have the same field unit they should not be listed both in the "base type" list IMO. ... Andreas Müller
02:55 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
If I enter a type designation and then add a duplicate without saving in between the first type designation gets lost... Andreas Müller
02:52 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
Any kind of accession number should not be required as sometimes such a number does not exist, but only collection an... Andreas Müller
02:48 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
Have we on purpose decided to only show accession number? Shouldn't we also allow barcode and/or catalogue number? Ot... Andreas Müller
02:46 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
After selecting the collection it would be a very helpful feature to show already existing specimen candidates for th... Andreas Müller
02:43 PM feature request #6413 (Feedback): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
We should change order, first collection, then accession number.
Also the status are not sorted. Order should be s...
Andreas Müller
11:52 AM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
now the button is available after creating the first type designation and the creation of the clone works fine.
Katja Luther
02:24 PM Revision 73a8b27a (taxeditor): ref #6413 small change in German translation for type duplicate
Andreas Müller
01:46 PM Revision a53422d5 (taxeditor): ref #8136: fix handling if status is set to null
Katja Luther
01:25 PM feature request #8147 (Closed): Add "plural" to representation detail element
Created new ticket #8224 Patrick Plitzner
12:17 PM feature request #8147 (Feedback): Add "plural" to representation detail element
The plural issue fully works now.
However there is an issue with the translation editor. When opening the transla...
Andreas Müller
01:25 PM bug #8224 (Worksforme): Misleading initial language selection in TranslationWizard
copied from #8147:
When opening the translation editor the first language in the list of available languages is sh...
Patrick Plitzner
01:24 PM Revision c1b8ad39 (taxeditor): ref #8058: fix common name language preference and save emtpy string if all terms are selected
Katja Luther
01:24 PM Revision 0bf51b59 (taxeditor): ref #8058: fix common name language preference and save emtpy string if all terms are selected
Katja Luther
01:20 PM feature request #7865 (Feedback): Remaining factual data view label issues
When I move a description (with no protected title cache) from 1 taxon to another taxon now the label of the new desc... Andreas Müller
01:16 PM Revision 12cf574a (cdmlib): ref #8088: avoid NPE in saveTaxonNode
Katja Luther
01:10 PM bug #8088 (In Progress): Open taxon node wizard issues
moved all fixed issues to a new ticket Katja Luther
01:05 PM bug #8088: Open taxon node wizard issues
Sorry, the review should be done only on the hotfix tasks, I will split this ticket. Katja Luther
01:04 PM bug #8088: Open taxon node wizard issues
Andreas Müller wrote:
> >Classification selection for top level taxa
>
> This is not yet fixed
At least for ne...
Andreas Müller
12:59 PM bug #8088 (Feedback): Open taxon node wizard issues
>Classification selection for top level taxa
This is not yet fixed
Andreas Müller
01:09 PM bug #8223 (Resolved): Urgent TaxonNode wizard issues
Katja Luther
01:08 PM bug #8223: Urgent TaxonNode wizard issues
Hallo,
bekomme diese Fehlermeldung beim Anlegen eines neuen Taxons.
viele Grüße und schöne WE
Nadja
~~~ tex...
Katja Luther
01:08 PM bug #8223: Urgent TaxonNode wizard issues
Ich habe versucht das Taxon eines Taxonnodes zu ändern und bekam den Fehler unten.
Gibt es dafür schon ein Ticket? K...
Katja Luther
01:07 PM bug #8223 (Resolved): Urgent TaxonNode wizard issues
Fixes for Hotfix 5.5.1:
* TOE (see comment 1) and LLE (see comment 2) in saveNewTaxonNode fixed
* Taxon Selection...
Katja Luther
12:25 PM Revision 46d9527b (taxeditor): ref #8136 slightly changed lectotype reference removal warning
Andreas Müller
12:07 PM bug #8148 (Closed): Login Dialog cuts off information
Seems to be fixed Andreas Müller
11:47 AM Revision 92749440 (taxeditor): fix #8111: fix saving problem for members in group
Katja Luther
10:30 AM Revision 1a1cc8f8 (cdmlib): ref #8096: smaller changes for update caches
Katja Luther
10:30 AM Revision c4fa45c2 (cdmlib): add test for adding member to group
Katja Luther

04/05/2019

03:41 PM feature request #8146: Adapt taxeditor UI to structure and property term type
Katja Luther wrote:
>
> Maybe it would be nice to have a possibility to distinguish between the term tree types. n...
Patrick Plitzner
09:59 AM feature request #8146 (Feedback): Adapt taxeditor UI to structure and property term type
tested on nightly:
open term editor for structures, create a new vocabulary, try drag&drop from one vocabulary to ...
Katja Luther
03:38 PM bug #8222 (Closed): Deleting a type designation from a name is directly persisted
The name editor is set to dirty but when closing it without saving the designation is deleted anyway. Patrick Plitzner
03:23 PM feature request #6413 (Resolved): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
The buttons are now updated with every add or remove.
The icon is from the Eclipse icon set and it is standard sized.
Patrick Plitzner
10:48 AM feature request #6413 (Feedback): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
Katja Luther
10:47 AM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
![](picture299-1.png)
the item is really small and after adding the first typedesignation the view is not updated,...
Katja Luther
02:39 PM Revision cec74f11 (taxeditor): ref #6413 Update toolbar when adding/deleting type designations
Patrick Plitzner
02:39 PM Revision 5ef12561 (taxeditor): ref #6413 Use UUIDS for service method parameters
Patrick Plitzner
02:34 PM Revision 8b7b8537 (cdmlib): ref #6413 Replace service method parameters with UUIDs
Patrick Plitzner
01:53 PM feature request #8150 (Closed): Allow editing the representation label of characters in details view
works fine now. Katja Luther
10:44 AM feature request #8150 (Resolved): Allow editing the representation label of characters in details view
Katja Luther wrote:
> in the character editor the label should be updated, too.
This is now fixed
Patrick Plitzner
09:10 AM feature request #8150 (Feedback): Allow editing the representation label of characters in details view
in the character editor the label should be updated, too. Katja Luther
01:37 PM bug #8148: Login Dialog cuts off information
this is fixed now. Katja Luther
01:31 PM bug #8148 (Resolved): Login Dialog cuts off information
Applied in changeset commit:taxeditor|deec2311a69183f731cc1e6ddf7f967cba6c0241. Katja Luther
01:37 PM Revision 9e35891c (taxeditor): fix #8148: add widthHint to advanced composite
Katja Luther
01:31 PM Revision deec2311 (taxeditor): fix #8148: add widthHint to styledTextfield
Katja Luther
01:26 PM Revision 63878e5a (taxeditor): ref #8136: externalization
Katja Luther
01:18 PM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
the problem for references is that if cacheStrategy.getFullAbbrevTitleString(this) returns null, the abbrevTitleCache... Katja Luther
11:10 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
Katja Luther wrote:
> Andreas Müller wrote:
> > Also when rerunning on references I always get the same result (upd...
Katja Luther
10:20 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
Andreas Müller wrote:
> Also when rerunning on references I always get the same result (updated objects 2669), secon...
Katja Luther
10:09 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
Andreas Müller wrote:
> When running on references (in rem_conf_am) I only get no task shown:
>
now it looks ...
Katja Luther
12:46 PM Revision 09015fb4 (taxeditor): ref #8136: externalization
Katja Luther
12:20 PM feature request #8136: Implement sources for type designations in TaxEditor
Katja Luther wrote:
> now there is a message asking if the user really wants to change the type away from lectotype ...
Katja Luther
12:20 PM feature request #8136 (Resolved): Implement sources for type designations in TaxEditor
now there is a message asking if the user really wants to change the type away from lectotype when a citation exist. Katja Luther
11:19 AM feature request #8136: Implement sources for type designations in TaxEditor
Validation already exists by the way #8139 but needs validation framework in place to be available Andreas Müller
11:10 AM feature request #8136 (Feedback): Implement sources for type designations in TaxEditor
To be honest, simply removing the reference is not my preferred solution. Is there a reason why we can't do like with... Andreas Müller
09:19 AM feature request #8136: Implement sources for type designations in TaxEditor
Tested on nightly: The reference of any *lectotype is removed when switching the designation status to any non-lectot... Patrick Plitzner
09:03 AM feature request #8136 (Resolved): Implement sources for type designations in TaxEditor
Katja Luther
08:55 AM feature request #8136: Implement sources for type designations in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > But maybe this should be handled in the library? When updating a ty...
Katja Luther
12:17 PM Revision b0ed30f0 (taxeditor): ref #8136: add warning message when changing type away from lectotype and citation exist
Katja Luther
11:42 AM feature request #8175 (Closed): add name facts to cdm light export
Andreas Müller wrote:
> I think if you have tested it intensively it may be correct. For me it would take a lot of t...
Katja Luther
11:22 AM feature request #8175 (Feedback): add name facts to cdm light export
I think if you have tested it intensively it may be correct. For me it would take a lot of time to test.
Only ques...
Andreas Müller
09:07 AM feature request #8175: add name facts to cdm light export
tested on nighlty with rem_conf_am:
created a namefact for Dianthella and exported subtree of Facchinia in classif...
Katja Luther
11:26 AM feature request #7428 (Resolved): Open issues for updating open data while subtree is updated
I tested again just now and it works as expected. The bulk editor also updates correctly Patrick Plitzner
10:04 AM feature request #7428: Open issues for updating open data while subtree is updated
there was an update yesterday (Revision 78bbc734), maybe you tested before? I tested again on nightly and the bulkedi... Katja Luther
11:14 AM feature request #8139: [Rule] Validate lectotype sources
no idea why this was in model change milestone Andreas Müller
11:11 AM bug #8115 (Closed): NPE when moving factual data
This now works as expected Patrick Plitzner
10:38 AM bug #8115 (Resolved): NPE when moving factual data
now drag & drop is only possible when neither the target nor the source description containing not persisted elements. Katja Luther
10:51 AM feature request #8044: Add "Move to..." menu to term editor
This is still an experimental feature which only shows up when the flag is set. I would either move this ticket to th... Patrick Plitzner
09:15 AM feature request #8044 (Feedback): Add "Move to..." menu to term editor
I would name it move feature as child or something like this because in the wizard you can choose the parent. Maybe y... Katja Luther
10:39 AM Revision 049fc82f (taxeditor): ref #8150 Refresh label in CharacterEditor when editing in detail view
Patrick Plitzner
10:29 AM task #8162 (Closed): Move term related classes from model.common to model.term
I cannot see any more term related classes in the common package Patrick Plitzner
09:31 AM task #8162: Move term related classes from model.common to model.term
looks fine. Katja Luther
09:28 AM bug #8190: Default FeatureTree throws exception
Seems to work.
I added some characters to rem_conf_am and got no exception when opening/working with factual data view.
Katja Luther
09:22 AM feature request #8153 (Closed): Adapt cdmlib to FeatureNode/FeatureTree model changes
I had a look on the changesets and it looks ok, so I close this ticket. For the generics we can open a new ticket. Katja Luther
09:10 AM bug #8088: Open taxon node wizard issues
The exception when creating a new taxon is now also fixed. Tested on nightly Patrick Plitzner
08:50 AM bug #8088 (Resolved): Open taxon node wizard issues
Katja Luther
09:03 AM feature request #8147 (Resolved): Add "plural" to representation detail element
Fixed the plural field and the "Finish" button Patrick Plitzner
09:00 AM feature request #7865: Remaining factual data view label issues
Works as excpected.
Tested on nightly. Added a factual data set and open the lock to edit the label, after save the ...
Katja Luther
08:45 AM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
Tested on nightly:
* Created a specimen description element and set modifier and Modifying text
* Closed and re-o...
Patrick Plitzner

04/04/2019

06:06 PM Revision c4224185 (taxeditor): ref #8147 Code cleanup
Patrick Plitzner
06:06 PM Revision a06ac8f6 (taxeditor): ref #8147 Enable "Finish" only if any data is present
Patrick Plitzner
04:32 PM Revision 78bbc734 (taxeditor): update bulkeditor if element of list of taxa contained in model
Katja Luther
03:18 PM Revision 2ba74e7b (taxeditor): ref #8147 Store representation if only plural is set
Patrick Plitzner
03:18 PM Revision b014556e (taxeditor): Show path of structure and property terms in character details view
Patrick Plitzner
02:56 PM feature request #8147: Add "plural" to representation detail element
What I did:
* open any term, e.g. Feature "Description" in term editor
* open translation editor
* choose German...
Andreas Müller
09:51 AM feature request #8147: Add "plural" to representation detail element
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > It works in Details View. In Translation Editor the value is no...
Andreas Müller
09:25 AM feature request #8147: Add "plural" to representation detail element
Andreas Müller wrote:
> It works in Details View. In Translation Editor the value is not stored if only plural is ad...
Patrick Plitzner
11:47 AM bug #8111: User selection dialog for groups does not filter out existing users
Andreas Müller wrote:
> I tested with the latest version. Adding a group to a member seems to work correctly. Adding...
Katja Luther
11:42 AM bug #8111: User selection dialog for groups does not filter out existing users
I tested with the latest version. Adding a group to a member seems to work correctly. Adding a user to a group is not... Andreas Müller
11:09 AM bug #8111: User selection dialog for groups does not filter out existing users
Can you write a test which shows that this problem is really due to merge?
By the way when calling merge saveOrUpd...
Andreas Müller
10:55 AM bug #8111: User selection dialog for groups does not filter out existing users
the selection dialog is fixed, but the saving still does not work. Katja Luther
10:41 AM bug #8111: User selection dialog for groups does not filter out existing users
Andreas Müller wrote:
> Katja Luther wrote:
> > Another point, the cascading from group to member is not implemente...
Katja Luther
10:38 AM bug #8111: User selection dialog for groups does not filter out existing users
Katja Luther wrote:
> Another point, the cascading from group to member is not implemented. Adding or deleting a mem...
Andreas Müller
10:19 AM bug #8111: User selection dialog for groups does not filter out existing users
Another point, the cascading from group to member is not implemented. Adding or deleting a member is not saved when s... Katja Luther
08:23 AM bug #8111: User selection dialog for groups does not filter out existing users
The dialog is created in SelectionDialogFactory. But `null` is passed as an argument which leads to this exception. @... Patrick Plitzner
11:34 AM bug #8221 (New): When changing nomenclatural code the name detail elements are not available anymore
when changing the nomenclatural code the name details are not available anymore, reopening the taxon solves the probl... Katja Luther
11:30 AM Revision 428a2961 (taxeditor): ref #8096: deduplicate message in progress bar
Katja Luther
11:29 AM feature request #8136: Implement sources for type designations in TaxEditor
Katja Luther wrote:
> But maybe this should be handled in the library? When updating a typedesignation check whether...
Andreas Müller
11:06 AM feature request #8136: Implement sources for type designations in TaxEditor
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > tested on nightly.
> >
> > Changing to any *lectotype will s...
Katja Luther
10:55 AM feature request #8136 (Feedback): Implement sources for type designations in TaxEditor
Patrick Plitzner wrote:
> tested on nightly.
>
> Changing to any *lectotype will show the reference related eleme...
Andreas Müller
11:20 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
Also when rerunning on references I always get the same result (updated objects 2669), second time I would expect 0.
...
Andreas Müller
11:17 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
When running on references (in rem_conf_am) I only get no task shown:
![](picture787-1.png)
Andreas Müller
11:13 AM feature request #8096 (Feedback): Implement CacheUpdater as long running task with correct progress monitoring
I get a strange duplication of task and progress now:
![](picture686-1.png)
Andreas Müller
11:09 AM Revision 310480f4 (taxeditor): ref #8136: remove citation if changed away from lectotype
Katja Luther
10:53 AM Revision 2040fc2c (taxeditor): ref #8111: fix selection of user
Katja Luther
10:09 AM Revision 423bae12 (cdmlib): deprecate isNomenclaturallyRelevant
Andreas Müller
10:05 AM Revision 3f0fc6a2 (cdmlib): javadoc for DefaultMatchStrategy
Andreas Müller
09:57 AM bug #8088: Open taxon node wizard issues
this should be fixed with the last commit in cdmlib Katja Luther
09:55 AM Revision 30eb4609 (cdmlib): ref #8088: fix LIE in saveTaxonNode
Katja Luther
09:38 AM Revision 7a7ac81c (taxeditor): revert changes in cdmServiceCacher
Katja Luther
09:22 AM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
Andreas Kohlbecker wrote:
> in this case the following properties are changed behind the scenes:
>
>
> ~~~
> ...
Andreas Müller
09:12 AM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
Andreas Kohlbecker wrote:
> Does this come from the `DefaultMatchStrategy`?
>
> What is this `DefaultMatchStrateg...
Andreas Müller
09:13 AM bug #7541: Insufficient rights lead to missing focus in name editor
I tested on nightly and rem_conf_am:
* Created a user "noTaxon" and a group "rightless" with two authorities ROLE_...
Patrick Plitzner
09:13 AM Revision c2e4881e (taxeditor): changes in CdmServerInfo
Katja Luther
08:33 AM feature request #8124: Activate Name Facts in Taxeditor
Tested on nightly:
* I selected a name in the bulk editor
* Creation of name description works
* The list of ava...
Patrick Plitzner
07:54 AM bug #8211: Trigger new search when clicking on identifier search
Andreas Müller wrote:
> For me it does not work. I tested on test/euromed.
>
> * Open reference selection dialog...
Patrick Plitzner
07:45 AM feature request #8146: Adapt taxeditor UI to structure and property term type
I copied additivity_ontology to my local DBs and connected with the taxeditor. Seems like it worked.
![](picture93...
Patrick Plitzner

04/03/2019

07:12 PM bug #8219 (Feedback): Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
Does this come from the `DefaultMatchStrategy`?
What is this `DefaultMatchStrategy` for? This class completely lac...
Andreas Kohlbecker
07:00 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
in this case the following properties are changed behind the scenes:
~~~
modified property found: protectedTit...
Andreas Kohlbecker
06:58 PM feature request #8153 (Resolved): Adapt cdmlib to FeatureNode/FeatureTree model changes
from my side we can close it, but I didn't check full code.
Patrick, could you still add "open issues" if you know w...
Andreas Müller
06:53 PM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
please do first review on nightly Andreas Müller
06:53 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
please do first review on nightly Andreas Müller
06:52 PM bug #8190: Default FeatureTree throws exception
please do first review on nightly Andreas Müller
06:51 PM bug #7541: Insufficient rights lead to missing focus in name editor
please do first review on nightly Andreas Müller
01:21 PM bug #7541 (Resolved): Insufficient rights lead to missing focus in name editor
The problem of this ticket is solved. With rem_conf_am and the nightly editor I could not reproduce the missing focus. Katja Luther
06:50 PM feature request #8124: Activate Name Facts in Taxeditor
please do first review on nightly Andreas Müller
06:49 PM feature request #8150: Allow editing the representation label of characters in details view
please do first review on nightly Andreas Müller
06:48 PM feature request #8175: add name facts to cdm light export
please do first review on nightly Andreas Müller
06:47 PM bug #8111 (Feedback): User selection dialog for groups does not filter out existing users
WIth test/rem_conf_am I could not open the dialog at all, but got
~~~
java.lang.NullPointerException
at eu.etax...
Andreas Müller
06:43 PM bug #8148 (Feedback): Login Dialog cuts off information
on the right side there is still missing 1 letter. Not serious but not looking so nice. Andreas Müller
06:42 PM bug #8148: Login Dialog cuts off information
![](picture258-1.png) Andreas Müller
06:37 PM bug #8143 (Closed): It is possible to open multiple instances of the login dialog
Seems to work. Andreas Müller
06:35 PM feature request #8147 (Feedback): Add "plural" to representation detail element
It works in Details View. In Translation Editor the value is not stored if only plural is added. Together with label ... Andreas Müller
06:23 PM bug #8151 (Closed): after creating a new synonym and pasting a name string the default string is not removed
Seems to work Andreas Müller
01:30 PM bug #8151: after creating a new synonym and pasting a name string the default string is not removed
Tested on nightly. This works. Patrick Plitzner
06:21 PM task #8162: Move term related classes from model.common to model.term
I think this is well tested in the meanwhile, but maybe everybody can shortly have a look if (s)he thinks that everyt... Andreas Müller
06:21 PM Revision 33bc4ab8 (cdm-vaadin): fixing initial focus for LoginDialog
Andreas Kohlbecker
06:19 PM bug #8220 (In Progress): incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
We, Henning and Andreas decided on the following solution:
* the click on the *existing name* button will open the...
Andreas Kohlbecker
06:18 PM bug #8211 (Feedback): Trigger new search when clicking on identifier search
For me it does not work. I tested on test/euromed.
* Open reference selection dialog,
* entered "6069704" => se...
Andreas Müller
01:34 PM bug #8211: Trigger new search when clicking on identifier search
Tested by switching between identifier and standard search in latest nightly. This works. Patrick Plitzner
05:59 PM feature request #8146 (Resolved): Adapt taxeditor UI to structure and property term type
I adjusted the update script. To test if the script works correctly now we should take a production database and move... Andreas Müller
03:57 PM feature request #8146 (Feedback): Adapt taxeditor UI to structure and property term type
Patrick Plitzner wrote:
> Katja Luther wrote:
> > deleting a feature from termTree throws an exception but removing...
Andreas Müller
03:51 PM feature request #8146: Adapt taxeditor UI to structure and property term type
Katja Luther wrote:
> deleting a feature from termTree throws an exception but removing is successful
>
This ...
Patrick Plitzner
03:15 PM feature request #8146: Adapt taxeditor UI to structure and property term type
* restricting tree selection seems to work
* drag&drop of terms into a term tree works as expected
Katja Luther
03:09 PM feature request #8146: Adapt taxeditor UI to structure and property term type
deleting a feature from termTree throws an exception but removing is successful
~~~ text
login : admin
editor ...
Katja Luther
01:22 PM feature request #8146: Adapt taxeditor UI to structure and property term type
For review check the points in the description and play around with vocabularies and trees of different term types.
...
Patrick Plitzner
05:47 PM Revision 6ae3aa93 (cdmlib): ref #8153 adapt ColumnAdder and ColumnTypeChanger to handle NOT NULL correctly for auditing tables
Andreas Müller
05:09 PM Revision a3cfc8c0 (cdm-vaadin): ref #8218 better extraction of the actual cause to be delegatged in the DelegatingErrorHandler
Andreas Kohlbecker
04:39 PM feature request #8136: Implement sources for type designations in TaxEditor
tested on nightly.
Changing to any *lectotype will show the reference related elements. The reference and the deta...
Patrick Plitzner
04:30 PM feature request #8044: Add "Move to..." menu to term editor
The menu item is only shown when experimental features are enabled. Therefore this can be tested later. Also this opt... Patrick Plitzner
03:52 PM feature request #8044 (Resolved): Add "Move to..." menu to term editor
As the term editor is not experimental this feature is also not experimental. Therefore it should be tested for corre... Andreas Müller
03:05 PM feature request #8044 (Closed): Add "Move to..." menu to term editor
Patrick Plitzner
03:05 PM feature request #8044 (Resolved): Add "Move to..." menu to term editor
Closing this ticket because it is implemented but still experimental. Patrick Plitzner
04:06 PM bug #8088 (Feedback): Open taxon node wizard issues
Tested on nightly.
* taxon selection is possible in edit and new wizard
* #8088#note-7 works
* #8088#note-9 stil...
Patrick Plitzner
03:57 PM Revision 03a2b1f4 (taxeditor): ref #8136 Show micro citation in details view
Patrick Plitzner
03:47 PM feature request #7428 (Feedback): Open issues for updating open data while subtree is updated
Tested on nightly.
![](picture547-1.png)
* Ask for saving before operation starts. -> this is fixed
* Only na...
Patrick Plitzner
03:15 PM feature request #8178: Auto-create absence/presence character for every structure
still experimental feature which will be fully implemented in next release Patrick Plitzner
03:12 PM feature request #6849: [DISCUSS] How to handle "kind of" term creation in TermEditor
Moving to next milestone for further discussion Patrick Plitzner
03:02 PM Revision cf7529d5 (taxeditor): ref #8044 Make "Move to..." experimental
Patrick Plitzner
02:51 PM Revision 6bf65877 (taxeditor): ref #8136: save citation of typeDesignation
Katja Luther
02:00 PM feature request #8096 (Resolved): Implement CacheUpdater as long running task with correct progress monitoring
Patrick Plitzner wrote:
> I tested updating caches with all options on on the lates nightly. The progress bar shows ...
Katja Luther
01:41 PM feature request #8096 (Feedback): Implement CacheUpdater as long running task with correct progress monitoring
I tested updating caches with all options on on the lates nightly. The progress bar shows the current work done and t... Patrick Plitzner
01:59 PM Revision e627dccd (taxeditor): ref #8096: subtask name is the same as task name
Katja Luther
01:55 PM Revision 5354f8db (taxeditor): ref #8115: drag&drop is not allowed for not persisted elements in source and target description
Katja Luther
01:38 PM bug #8200: Changing title(cache) for factual data set not possible
It's more a general question how this should be handled. So it is a question to all of us. Katja Luther
01:36 PM bug #8200: Changing title(cache) for factual data set not possible
should this be moved back to PP? Andreas Müller
12:54 PM bug #8200 (Feedback): Changing title(cache) for factual data set not possible
> High priority as unexpected behavior and even wanted titles like "Moved from ..." can get lost this way.
The def...
Katja Luther
01:35 PM feature request #8122: Implement selection of modifier vocabulary for structures and properties
Moving to next release as we have to discuss if this is really needed Patrick Plitzner
01:28 PM feature request #8011 (Closed): Implement term search view
Closing this ticket because it is implemented but still experimental. Patrick Plitzner
01:26 PM bug #8115: NPE when moving factual data
I tested on the latest nightly: The new description does not get deleted this time. But the new abstract that has bee... Patrick Plitzner
01:20 PM feature request #8121 (Closed): Allow selecting structural/property modifiers when creating a character
Closing this ticket because it is implemented but still experimental. Patrick Plitzner
01:19 PM feature request #7923 (Closed): Add context menu and drag'n'drop to CharacterEditor
Closing this ticket because it is implemented but still experimental Patrick Plitzner
12:21 PM Revision 28c02ec4 (taxeditor): Remove "New kindOf" menu item
Patrick Plitzner
12:21 PM Revision b0b1cfbe (taxeditor): Remove character term editor menu item
Patrick Plitzner
10:32 AM Revision ee512dbf (taxeditor): ref #8189 using getCdmHomeDirFallback() when the appcontext is not yet available - 2
Andreas Kohlbecker
10:17 AM Revision bdc08221 (taxeditor): ref #8189 using getCdmHomeDirFallback() when the appcontext is not yet available
Andreas Kohlbecker
10:15 AM Revision 945508b5 (cdmlib): ref #8189 fallback method for getCdmHomeSubDir() and fixing bug in getCdmHomeDirFallback()
Andreas Kohlbecker
09:13 AM feature request #7920 (In Progress): Possibility to define area specific status selection
Katja Luther

04/02/2019

07:25 PM bug #8220: incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
Did I miss something?
Two points are important:
1) To avoid name duplicates
2) To prompt users to register the use...
Wolf-Henning Kusber
06:54 PM bug #8220 (Feedback): incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
this needs to be discussed Andreas Kohlbecker
06:52 PM bug #8220 (Closed): incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
![](picture530-1.png)
![](picture530-2.png)
Andreas Kohlbecker
06:32 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
this is most probably once again a problem related to a field of the reference modified during the data management do... Andreas Kohlbecker
06:30 PM bug #8219 (Rejected): Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
This happened in the following case.
* User andreas (submitter)
* regStart view
* create new reference with "*A...
Andreas Kohlbecker
06:05 PM bug #8217 (Resolved): ToManyRelatedEntitiesComboboxSelect edit button not enabled
Please review with user **submitter** and **curator** Andreas Kohlbecker
01:51 PM bug #8217 (Closed): ToManyRelatedEntitiesComboboxSelect edit button not enabled
In the TaxonNamePopupEditor the edit button of the Basionyms should always be enabled even if the editor which would ... Andreas Kohlbecker
06:04 PM Revision e38b81a7 (cdm-vaadin): ref #8217 enabling ToManyRelatedEntitiesComboboxSelect and fixing read only state of AbstractCdmDTOPopupEditors
Andreas Kohlbecker
06:03 PM bug #8218 (Closed): Show appropriate error message when accessing RegistrationWorkingsetEditor without sufficient permissions
Andreas Kohlbecker
03:56 PM bug #8218 (Resolved): Show appropriate error message when accessing RegistrationWorkingsetEditor without sufficient permissions
Applied in changeset commit:cdm-vaadin|bbe0f8d54845856f7642b54a6ecc96dc3bf7eaa2. Andreas Kohlbecker
03:53 PM bug #8218 (Closed): Show appropriate error message when accessing RegistrationWorkingsetEditor without sufficient permissions
The RegistrationWorkingsetEditor currently shows the default error dialog when being accessed without the required p... Andreas Kohlbecker
05:50 PM Revision 6d74a77f (cdm-vaadin): ref #8217 proper setting of the readonly state for ToManyRelatedEntitiesListSelect fields
Andreas Kohlbecker
04:06 PM bug #7406 (Resolved): [CHECK] Check if all original source names of occurrences are correctly imported
Should be resolved. Check again before closing. Andreas Müller
04:03 PM bug #7406 (In Progress): [CHECK] Check if all original source names of occurrences are correctly imported
Check results for bellis perennis in Sicily if no duplicate sources exist anymore. The duplicates can not be seen in ... Andreas Müller
04:02 PM bug #7406: [CHECK] Check if all original source names of occurrences are correctly imported
It looks like this is correct now. However, there were >3500 duplicates in emOccurrenceSource with same OccFk, Source... Andreas Müller
03:56 PM Revision bbe0f8d5 (cdm-vaadin): fix #8218 implementing PermissionDeniedErrorHandler to handle all uncaught PermissionDeniedExceptions in a UI
Andreas Kohlbecker
03:49 PM Revision 61dee665 (taxeditor): ref #8146 Adjust term type check
Patrick Plitzner
02:16 PM Revision e05131c1 (cdm-vaadin): avoiding RegistrationWorkingsetPresenters to handle events from foreign view:
- pushing common EditorActionContext methods up
- checking for own view in context root
Andreas Kohlbecker
01:41 PM task #7798 (Resolved): [AM, ERS]: Import (freetext) nameInSource correctly
Andreas Müller wrote:
> Eckhard noch fragen, was mit den Namen geschehen soll, bei denen LinkedName und FreeTextName...
Andreas Müller
01:24 PM Revision 4adf618f (cdmlib): ref #8189 fixing invalid NULL check
Andreas Kohlbecker
12:06 PM feature request #5873: Implement rights&roles for TaxEditor distribution editor
We should at least very soon know, how far rights&role work for distribution editor. And define what still needs to b... Andreas Müller
11:32 AM Revision c1460d6c (cdmlib): ref #8189 removing useless trailing slashes
Andreas Kohlbecker
11:09 AM Revision da8a5db3 (cdmlib): toString() method for RegistrationWorkingSet
Andreas Kohlbecker
10:21 AM bug #8216 (New): Layout issue UI in IE
Test with IE 11.0.115
Small layout issue: blue bar is not visilbe, see screen shot.
Functionality okay, including...
Wolf-Henning Kusber
08:30 AM Revision 2580ff7a (cdmlib): ref #8115: adapt test
Katja Luther

04/01/2019

06:15 PM feature request #7548 (In Progress): RegistrationWorkingSetEditor loads slowly with big working sets
Andreas Kohlbecker
06:14 PM Revision fadb1f53 (cdm-vaadin): ref #7548 relaoding of the workingset only when a 'root' popupeditor has been closed
Andreas Kohlbecker
05:57 PM bug #8214 (In Progress): WeaklyRelatedEntityCombobox is not validated
the field should only be set on error if the user tries to save the editor or when the focus leaved the field. Otherw... Andreas Kohlbecker
05:53 PM bug #8214: WeaklyRelatedEntityCombobox is not validated
please review Andreas Kohlbecker
04:09 PM Revision 4d06c9a3 (cdmlib): ref #7433: add controller method to get dnaSample for given geneticAccessionnumber
Katja Luther
04:07 PM Revision d54f179a (cdmlib): ref #8115: do not delete description when moving the last element
Katja Luther
04:07 PM Revision 72631511 (cdmlib): ref #8096: minor
Katja Luther
03:54 PM bug #7703: Multiple names cannot be shown in TypeDesignationDetailElement for specimens
Moving to 5.7 because it doesn't have highest priority Patrick Plitzner
03:48 PM Revision 341fa6e3 (cdmlib): ref #8190 Fix termType in FeatureNode creation
Patrick Plitzner
03:40 PM Revision d1ff60c6 (cdmlib): ref #7700:smaller changes in TypeDesignationManager (add fide citation)
Katja Luther
03:26 PM Revision 865b0f31 (cdmlib): revert controller method in OccurenceListController
Katja Luther
03:11 PM bug #8190: Default FeatureTree throws exception
commit:cdmlib|6850fcf9bff05af4a123d77be88f98049d256423. Patrick Plitzner
02:55 PM Revision 0e6db332 (cdmlib): adapt ConfigFileUtils to handle file access without appllication context
Katja Luther
01:50 PM bug #8050 (Resolved): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
I consider this issue as being completed, please review Andreas Kohlbecker
01:49 PM Revision 8feb2342 (cdmlib): ref #7433: add controller method to get dnaSample for given geneticAccessionnumber
Katja Luther
01:14 PM bug #8211: Trigger new search when clicking on identifier search
please review.
You need some references with additional identifiers.
Katja Luther
01:14 PM bug #8211 (Resolved): Trigger new search when clicking on identifier search
Applied in changeset commit:taxeditor|fbd5dac1173dd4e19ba9e470b3d4726e0275ed08. Katja Luther
01:14 PM Revision fbd5dac1 (taxeditor): fix #8211: trigger new search if identifier search is selected
Katja Luther
12:30 PM bug #8213 (Closed): MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!regStart
problem solved. Andreas Kohlbecker
12:28 PM bug #8213 (Resolved): MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!regStart
Applied in changeset commit:cdm-vaadin|e001877db8b2aadba14c286801d7f23e91dee120. Andreas Kohlbecker
12:28 PM Revision e001877d (cdm-vaadin): fix #8213 fixing db query for users witch have not created any references yet
Andreas Kohlbecker
11:32 AM task #7515 (In Progress): TypeDesignationStatusComparator to sort by vocabulary first and then by term order
Katja Luther
11:32 AM task #7515: TypeDesignationStatusComparator to sort by vocabulary first and then by term order
now TypeDesignationStatusComparator inherit from OrderedTermBaseComparator Katja Luther
11:27 AM Revision ba6cefb5 (cdmlib): ref #7515: TypedesignationStatusComparator inherit from OrderedTermComparator
Katja Luther
11:24 AM feature request #8058 (In Progress): Further issues for (local) preferences
I don't know why the dialog height is not set correctly.
The language issues are implemented.
Katja Luther
11:21 AM feature request #3836 (Resolved): Implement modifiers and modifying text for Description Elements in TaxEditor
This is implemented now, please review Katja Luther
11:07 AM feature request #8215 (Closed): User demand: sorting order in reference editor
Reference editor:
Author and in-Ref are sorting "contains".
User demand: sorting should be "begins with"
Example...
Wolf-Henning Kusber

03/29/2019

06:44 PM Revision 7d6b1e3a (cdm-vaadin): ref #8107 ref #8099 reverting changes which have been picked from hotfix branch in favour of the better implementation in the develop branch
Andreas Kohlbecker
06:21 PM Revision ee53ccf7 (cdm-vaadin): fix #8214 fixing required validation for WeaklyRelatedEntityCombobox and centralizing related messages
Andreas Kohlbecker
06:21 PM bug #8214 (Resolved): WeaklyRelatedEntityCombobox is not validated
Applied in changeset commit:cdm-vaadin|ddb31e64c51be1fd555999535863cebe68a6bd8d. Andreas Kohlbecker
04:06 PM bug #8214 (Closed): WeaklyRelatedEntityCombobox is not validated
WeaklyRelatedEntityComboboxes set to required are not validated on form submission.
If affects the TaxonNamePopupEditor
Andreas Kohlbecker
06:20 PM Revision ddb31e64 (cdm-vaadin): fix #8214 fixing required validation for WeaklyRelatedEntityCombobox and centralizing related messages
Andreas Kohlbecker
04:02 PM Revision 580d5157 (cdm-vaadin): ref #8050 validing related name nomenclatural reference to require the user to add missing references when reusing an exising name
Andreas Kohlbecker
04:02 PM Revision 595150ac (cdm-vaadin): ref #8099 better logging of error conditions and more robust error handling in save()
Andreas Kohlbecker
03:59 PM bug #8213 (Closed): MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!regStart

~~~
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; ...
Andreas Kohlbecker
03:23 PM Revision 9b7d57ff (cdmlib): ref #8189 providing fallback method to retrieve the ~/.cdmLibrary folder without application context
Andreas Kohlbecker
02:50 PM Revision 77056dda (cdm-vaadin): ref #8099 better logging of error conditions and more robust error handling in save()
Andreas Kohlbecker
02:39 PM bug #8099: Error saving name type designation editor due to problem in poupeditor context
this exception augments another exception which happened during the save() operation. Any information on the original... Andreas Kohlbecker
02:31 PM Revision 6062e4a0 (cdm-vaadin): ref #8050 validing related name nomenclatural reference to require the user to add missing references when reusing an exising name
Andreas Kohlbecker
02:03 PM Revision f020b39e (cdmlib): ref #7920: add new predicate for per area status preferences
Katja Luther
02:00 PM Revision 683a21a5 (cdmlib): Fix potential NPE
Patrick Plitzner
12:50 PM Revision 12b0669d (taxeditor): ref #7932: add getBestMatching method using preferenceResolver in preferenceCache
Katja Luther
12:50 PM Revision fa1dc0a8 (taxeditor): ref #7932: add getBestMatching method using preferenceResolver in preferenceCache
Katja Luther
12:08 PM bug #8212: when closing media view, the factual data view becomes empty
the problem is that it is not possible to set the focus on the name editor again after removing the media view. when ... Katja Luther
11:07 AM bug #8212 (New): when closing media view, the factual data view becomes empty
Katja Luther

03/28/2019

07:55 PM feature request #7860: [Master] Remaining E+M editor issues
Urgent for E+M and therefore should be handled latest in 5.7. But especially important is the task covered by #7920 Andreas Müller
07:52 PM feature request #7920: Possibility to define area specific status selection
This is urgent for E+M and should be handled very soon. Latest in 5.7 but if possible in 5.6 Andreas Müller
07:34 PM task #7455 (Resolved): [Check] Check all markers for correctnes
After import we should still check if need those markers with small count. Therefore do not close completely. Andreas Müller
02:09 PM feature request #7865 (Resolved): Remaining factual data view label issues
this should be fixed by fixing #8200 Patrick Plitzner
02:08 PM bug #8200 (Resolved): Changing title(cache) for factual data set not possible
I replaced the label with a toggleable cache field.
How it works now: When setting the cache to unprotected (closi...
Patrick Plitzner
02:04 PM Revision fd9044a1 (taxeditor): ref #8200 Replace description label with cache element in details view
- Fix potential cache update problems Patrick Plitzner
01:07 PM Revision e6d23538 (taxeditor): ref #8200 Remove unnecessary refresh
Patrick Plitzner
10:59 AM bug #8211 (Closed): Trigger new search when clicking on identifier search
in reference search dialog a new search should be triggered if identifier search is clicked Katja Luther
10:09 AM bug #8210 (New): During search in bulk editor it is not possible to select items
As running a search is done in another thread and the list is updated asynchronously it is not possible to select an ... Patrick Plitzner
08:47 AM task #8209 (Closed): use ellypsed references for all reference comboboxes
use the `ReferenceEllypsisFormatter` which has been implemented for #7951 in all reference comboboxes Andreas Kohlbecker
08:40 AM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Wolf-Henning Kusber wrote:
> Solution 1 should also preclude name duplicates.
this should be handled in a separat...
Andreas Kohlbecker
08:39 AM feature request #8121 (Resolved): Allow selecting structural/property modifiers when creating a character
Patrick Plitzner
08:39 AM feature request #8208 (New): Allow selecting property modifiers when creating a character
copied from #8121 Patrick Plitzner
08:38 AM feature request #8207 (New): RegistrationUI: helps avoid name duplicates
When ever a user is about to create a new name, the system should check for potential duplicates of the name to be cr... Andreas Kohlbecker
08:34 AM feature request #7923 (Resolved): Add context menu and drag'n'drop to CharacterEditor
Patrick Plitzner
08:33 AM feature request #8146 (Resolved): Adapt taxeditor UI to structure and property term type
Patrick Plitzner
08:27 AM feature request #8011 (Resolved): Implement term search view
Patrick Plitzner

03/27/2019

05:59 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
Eckhard noch fragen, was mit den Namen geschehen soll, bei denen LinkedName und FreeTextName nicht übereinstimmen.
D...
Andreas Müller
05:58 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
ERS decided to use synonymie names whereever possible. Equalness of existence of authors is not so important.
With t...
Andreas Müller
05:57 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Solution 1 should also preclude name duplicates. Wolf-Henning Kusber
05:36 PM bug #8050 (In Progress): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
We agreed on solution 1. from above: "*Require the user to add a reference to the name before the popup editor in whi... Andreas Kohlbecker
01:12 PM bug #8050 (Feedback): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
There will be situations in which the existing name will not yet have a nomenclatural reference. Creating a Registrat... Andreas Kohlbecker
05:36 PM feature request #7894 (Resolved): [CHECK] Import sourceNumber as Identifier for references
Andreas Müller
04:32 PM bug #7963: TaxonNamePopEditor: name part field visibility not correct for all ranks
done!
For the rank "unknown rank" only the uninomial field is shown
For the remaining tasks formulated in the d...
Andreas Kohlbecker
04:16 PM bug #7963 (Resolved): TaxonNamePopEditor: name part field visibility not correct for all ranks
Applied in changeset commit:cdm-vaadin|a0643e2c0aa12a7c83f208bf2709dc06a163befb. Andreas Kohlbecker
04:27 PM Revision 712e49c6 (cdm-vaadin): ignoring workbench.xmi
Andreas Kohlbecker
04:24 PM Revision dcf5e676 (cdm-vaadin): fix #7963 trating UNKNOWN Rank class as super-specific
Andreas Kohlbecker
04:18 PM Revision b2261934 (cdm-vaadin): ignoring workbench.xmi
Andreas Kohlbecker
04:16 PM Revision a0643e2c (cdm-vaadin): fix #7963 trating UNKNOWN Rank class as super-specific
Andreas Kohlbecker
03:54 PM bug #8197 (Closed): Deleting Media from Image Gallery View does not make view dirty
works fine Patrick Plitzner
02:45 PM bug #8197 (Resolved): Deleting Media from Image Gallery View does not make view dirty
this should be fixed now. The operation is executed while saving now. Katja Luther
03:47 PM task #7935 (Feedback): Discuss new solution to establish the communication between submitter and curator
Hi Henning,
is there anything left to discuss regarding this issue?
Andreas
Andreas Kohlbecker
03:46 PM Revision 032b62c4 (taxeditor): ref #7428: update all name editors involved when executing subtree operations
Katja Luther
03:45 PM Revision 9e1446d2 (taxeditor): ref #7428: update all name editors involved when executing subtree operations
Katja Luther
03:44 PM feature request #7968 (Closed): ReferenceEditor: optional validation for completenes of Partial values in datePublished
fully implemented but untestable since the system apparently does not allow to use incomplete Partials in the vaadin UI. Andreas Kohlbecker
03:42 PM feature request #7968 (Resolved): ReferenceEditor: optional validation for completenes of Partial values in datePublished
Applied in changeset commit:cdm-vaadin|f8fda7a9f00c1e87430c03d06bbcfcff44aa7ff4. Andreas Kohlbecker
02:56 PM feature request #7968 (In Progress): ReferenceEditor: optional validation for completenes of Partial values in datePublished
Andreas Kohlbecker
03:43 PM Revision 10d072e7 (cdm-vaadin): fix #7968 validators for completeness of Partial and TimePeriod
Andreas Kohlbecker
03:42 PM Revision f8fda7a9 (cdm-vaadin): fix #7968 validators for completeness of Partial and TimePeriod
Andreas Kohlbecker
03:40 PM Revision 981b5cfb (taxeditor): minor
Katja Luther
03:00 PM bug #7833 (Rejected): submitters can access see any registration in any RegistrationWorkingSet
Andreas Kohlbecker
02:40 PM Revision 5e966d50 (taxeditor): ref #8197: fix delete of media in media view
Katja Luther
02:27 PM bug #8206 (New): Editing references with missing update rights should not be possible
Actually it is possible to edit references without the UPDATE right for references. While saving the user gets an exc... Katja Luther
02:17 PM Revision a6edfc5a (cdm-vaadin): ref #8050 fixing bug in reloadRegistrtions() and removing remain from previous conflict
Andreas Kohlbecker
01:47 PM Revision ee57c0d9 (cdm-vaadin): ref #8050 fixing bug in reloadRegistrtions() and removing remain from previous conflict
Andreas Kohlbecker
11:43 AM Revision f1e0b490 (cdmlib): comments and doc for IRegistrationService
Andreas Kohlbecker
11:39 AM Revision 7ebcfd4b (cdm-vaadin): ref #8184 reverting typedesignation status filter back to ListSelect
Andreas Kohlbecker
11:36 AM Revision 8af7fcc2 (cdm-vaadin): ref #8050 creating blocking registrations for exising names which are used in the context of another registration
Andreas Kohlbecker
11:35 AM Revision eee96dac (cdm-vaadin): ref #8050 moving transactional code from RegistrationWorkingsetPresenter to new service class
Andreas Kohlbecker
11:30 AM Revision 4e29c10f (cdm-vaadin): ref #8050 creating blocking registrations for exising names which are used in the context of another registration
Andreas Kohlbecker
09:24 AM bug #5279: Deleting taxon node is slow in some cases
this is the same problem as in #5278, when deleting a node with a lot of siblings the creation of the new sortindex t... Katja Luther

03/26/2019

05:14 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Wenn man versehentlich einen falschen namen z.B. als Basionym auswählt, würde dann für diesen Namen eine Blocking-Reg... Andreas Kohlbecker
05:05 PM Revision 68afc0ec (cdm-vaadin): ref #8050 moving transactional code from RegistrationWorkingsetPresenter to new service class
Andreas Kohlbecker
03:57 PM bug #8149 (Closed): ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL
Henning, says this is tested and works as expected. Andreas Kohlbecker
03:55 PM bug #8194 (Closed): LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name
Andreas Kohlbecker
03:54 PM bug #8194: LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name
We agreed on :
> 1. hide the delete button in this situation and implement #8204
Warning is sufficient, we don'...
Andreas Kohlbecker
03:53 PM feature request #8204: RegistrationWorkingsetEditor shows list of unused sections and allows for delting them
nice to have Andreas Kohlbecker
03:48 PM bug #4545 (Closed): Implement TeamOrPersonBaseSelectionDialog
The selection dialog works like the other selection dialogs. Institution, as the only sub class of AgentBase that sho... Patrick Plitzner
03:44 PM bug #8191 (Closed): ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked
Andreas Kohlbecker
03:38 PM bug #8197 (Feedback): Deleting Media from Image Gallery View does not make view dirty
Now the name editor is set to dirty but if it is closed without saving the media is removed anyways. So either the me... Patrick Plitzner
08:47 AM bug #8197: Deleting Media from Image Gallery View does not make view dirty
this should be fixed, please review. Katja Luther
03:30 PM bug #8192 (Closed): The curator must be able to unlock a published registration for edition
Andreas Kohlbecker
09:19 AM bug #8115: NPE when moving factual data
this is because the description only contains a not persisted description element and this is not available when the ... Katja Luther

03/25/2019

06:58 PM bug #8192: The curator must be able to unlock a published registration for edition
Checked in Test-System with two names of Nupela, registered 2018-11-02.
TypeSpecimen: unlock and add a type: works...
Wolf-Henning Kusber
02:50 PM bug #8192 (Resolved): The curator must be able to unlock a published registration for edition
done, please review Andreas Kohlbecker
05:46 PM bug #8191: ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked
I was able to include new journal names in Basionym references. I included sections in the name editor and was able t... Wolf-Henning Kusber
02:51 PM bug #8191 (Resolved): ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked
please review Andreas Kohlbecker
05:28 PM bug #8050 (In Progress): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Andreas Kohlbecker
04:45 PM bug #7962: PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more humane labels
Please review Andreas Kohlbecker
04:42 PM bug #7962 (Resolved): PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more humane labels
Applied in changeset commit:cdm-vaadin|8745f04714df865f1780025b43b24b9eaa5a198a. Andreas Kohlbecker
04:43 PM Revision 89659534 (cdm-vaadin): fix #7962 "New" or "Edit" information and humane lables for DTO editors in context breadcrumbs
Andreas Kohlbecker
04:42 PM Revision 8745f047 (cdm-vaadin): fix #7962 "New" or "Edit" information and humane lables for DTO editors in context breadcrumbs
Andreas Kohlbecker
02:56 PM Revision 34d43087 (cdm-vaadin): ref #8191 intoducing the long awaited EditorFormConfigurator for fine tuning of the inReference button enabled states
Andreas Kohlbecker
02:56 PM Revision cd93f49b (cdm-vaadin): ref #8192 unlock button to allow curator and admin to edit published Registrations
Andreas Kohlbecker
02:48 PM Revision f151a6f9 (cdmlib): ref #8188 adding empty hibernate.properties for main to satisfy PropertiesFactoryBean in production mode
Andreas Kohlbecker
02:17 PM feature request #8033 (Duplicate): Add/Enable absent/present state for every character
duplicates #8178 Patrick Plitzner
02:13 PM Revision 61c21b1e (cdm-vaadin): ref #8188 adding empty hibernate.properties for main to satisfy PropertiesFactoryBean in production mode
Andreas Kohlbecker
01:15 PM Revision a4b97169 (cdm-server): ref #8189 cdm-server stores parameters as initParameter instead as Attribute, this allows to access these via Spring Environment
Andreas Kohlbecker
01:13 PM Revision 6dd0caa2 (cdmlib): ref #8189 better reporting of error conditions in AbstractWebApplicationConfigurer
Andreas Kohlbecker
10:12 AM feature request #8153: Adapt cdmlib to FeatureNode/FeatureTree model changes
By introducing the generics this is probably done. There is still some code which does not use/specify generics but t... Patrick Plitzner

03/23/2019

09:37 AM Revision ae855a23 (cdmlib-apps): Import E+M details notes as name notes
Andreas Müller
12:11 AM Revision febf715a (cdmlib-apps): adapt app-import to new AccountStore package
Andreas Müller

03/22/2019

11:53 PM Revision 2f2c4477 (cdmlib): minor
Andreas Müller
11:53 PM Revision 3bde5f80 (cdmlib): fix bug in term type check
Andreas Müller
11:28 PM Revision 78159090 (cdm-vaadin): ref #8191 intoducing the long awaited EditorFormConfigurator for fine tuning of the inReference button enabled states
Andreas Kohlbecker
11:06 PM Revision 6850fcf9 (cdmlib): fix term type check in FeatureNode
Andreas Müller
10:29 PM Revision fad2732b (cdmlib): Revert "Remove useless check"
This reverts commit 1a4fdfe5c12c655451e25c567f656a8df0f1b9a5. Andreas Müller
09:32 PM Revision 16580b3c (cdm-vaadin): ref #8192 unlock button to allow curator and admin to edit published Registrations
Andreas Kohlbecker
09:31 PM Revision 97c6b732 (cdm-vaadin): ref #8184 reverting typedesignation status filter back to ListSelect
Andreas Kohlbecker
07:58 PM bug #8075 (Resolved): multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations
Andreas Kohlbecker
07:49 PM bug #8075: multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations
potentially fixed through the changes made for #8160, #7106 Andreas Kohlbecker
07:57 PM bug #8158 (Resolved): cascade="all-delete-orphan" problem when ....
potentially fixed through the changes made for #8160, #7106 Andreas Kohlbecker
07:56 PM bug #7881 (Resolved): reference selection combobox broken after error in ...
potentially fixed through the changes made for #8160, #7106 Andreas Kohlbecker
07:51 PM bug #8065 (Feedback): HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table
potentially fixed through the changes made for #8160, #7106 Andreas Kohlbecker
07:36 PM Revision fd6328a5 (cdmlib): minor changes in TermLoader
Andreas Müller
07:21 PM Revision 16ee34cb (cdm-vaadin): fix #8184 using NativeSelect instead of ListSelect to avoid circumvent a bug in the ListSelect which affects the Chrome browser
Andreas Kohlbecker
07:21 PM Revision 68d2ffb7 (cdm-vaadin): fix #8149 inclusion of NULL and Genric ref types optional and fixing bugy refresh
Andreas Kohlbecker
07:20 PM bug #8149: ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL
please review Andreas Kohlbecker
07:18 PM bug #8149 (Resolved): ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL
Applied in changeset commit:cdm-vaadin|27820075a6585b46648a6f1dcd4241a6b45596d8. Andreas Kohlbecker
07:19 PM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
please review with Heba if this still occurs Andreas Kohlbecker
07:18 PM bug #8184 (Resolved): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
Applied in changeset commit:cdm-vaadin|86f09e7b2e34f272b2f4769f5f7fb3729fea7ef7. Andreas Kohlbecker
07:18 PM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
this seems to be a bug in the ListSelect which affects the Chrome browser Andreas Kohlbecker
07:16 PM Revision 86f09e7b (cdm-vaadin): fix #8184 using NativeSelect instead of ListSelect to avoid circumvent a bug in the ListSelect which affects the Chrome browser
Andreas Kohlbecker
06:42 PM Revision 27820075 (cdm-vaadin): fix #8149 inclusion of NULL and Genric ref types optional and fixing bugy refresh
Andreas Kohlbecker
06:28 PM feature request #8180 (In Progress): Add property term "Presence/Absence" to CDM default terms
Andreas Müller
06:28 PM feature request #8153 (Feedback): Adapt cdmlib to FeatureNode/FeatureTree model changes
is this still an open issue? If yes, can you give more inside? Andreas Müller
06:13 PM bug #8183 (In Progress): Make Feature IndividualAssociation a generalization of Specimen and Observation
Andreas Müller
06:07 PM Revision 1064bb88 (cdmlib-apps): ref #7669 latest changes to Greece Willing images import, incl. no barcode import
Andreas Müller
04:35 PM bug #8205 (New): SpecimenTypeDesignationsEditor: First selection of mediaReference gets lost
Permanent bug:
Image Reference is selected for the first time -> selected but not gets lost when clicking in another...
Wolf-Henning Kusber
03:51 PM bug #8194 (Feedback): LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name
Even if the LazyInitializationException is avoided deletion of the section is impossible since it is still in use as ... Andreas Kohlbecker
03:38 PM Revision 9817d054 (cdm-vaadin): updating poms for 5.5.4 branch with snapshot versions
jenkins
03:32 PM Revision d8ec06ee (cdm-vaadin): removing useless session flush in CdmStore.delete function
Andreas Kohlbecker
03:32 PM bug #8115: NPE when moving factual data
I just tested it with cdmlib and taxeditor completely up-to-date. I tested on a copy of flora of greece this time to ... Patrick Plitzner
02:06 PM bug #8115: NPE when moving factual data
Did you test with the actual cdmlib version?
cdmlib was not build until this morning.
Katja Luther
01:46 PM bug #8115 (Feedback): NPE when moving factual data
Now saving in step 4 works but the description with the description from which the element was moved away from disapp... Patrick Plitzner
03:31 PM feature request #8204 (New): RegistrationWorkingsetEditor shows list of unused sections and allows for delting them
the RegistrationUI does not allow deleting unused sections. The RegistrationWorkingsetEditor could show the list of u... Andreas Kohlbecker
03:24 PM bug #8203 (New): Adapt specimen page title to record basis
The current specimen page hast "Specimen" written in the title despite the actual record basis
Example: http://por...
Patrick Plitzner
03:15 PM Revision eacea571 (cdmlib): ref #8189 DataSourceConfigurer @Autowiring ConfigFileUtil to init this bean before
Andreas Kohlbecker
02:50 PM bug #8202 (Worksforme): Multiple representations exception when reusing image in image gallery
In Flora of Greece I tried to move an image from taxon Anchusa aegyptiaca to Anchusella variegata.
I did this by fir...
Andreas Müller
02:39 PM task #8201 (In Progress): test all delete functionality in the RegistrationUI
Andreas Kohlbecker
02:35 PM bug #8200 (Closed): Changing title(cache) for factual data set not possible
When trying to change the title of a factual data set in details view the old title is recreated during save.
Corr...
Andreas Müller
02:32 PM bug #8197 (Resolved): Deleting Media from Image Gallery View does not make view dirty
Applied in changeset commit:taxeditor|02bb31eada6b7edfb3c3d155bb13ad967428aa56. Katja Luther
02:22 PM bug #8197 (Closed): Deleting Media from Image Gallery View does not make view dirty
... therefore one may think that the media is deleted but it is not after reload. This is dangerous therefore high pr... Andreas Müller
02:32 PM Revision 02bb31ea (taxeditor): fix #8197: fix make name editor dirty if media is deleted
Katja Luther
02:26 PM feature request #8199 (New): ReferencePage: show the relation of orthographic corrections to the corrected name
in case of an orthographic correction both names which are related this way belong to the same publication.
In the...
Andreas Kohlbecker
02:24 PM bug #8198 (Closed): Deleting an image gallery from image gallery view shows wrong configuration dialog
It shows the same dialog like when deleting media, but the image gallery is something else. Image galleries should no... Andreas Müller
02:16 PM feature request #8196 (Closed): display ortographic corrections in name relations as 'corrected name: <nameCache>'
ortographic corrections are to be displayed as last entries in the name relations:
* corrected name: <nameCache> [...
Andreas Kohlbecker
01:54 PM Revision 3480974e (cdm-vaadin): ref #7356 ignoring selenide tests for now since they conflict with other tests
Andreas Kohlbecker
01:53 PM Revision a630e869 (cdm-vaadin): ref #7356 documentation on setting up the project for selenide tests
Andreas Kohlbecker
01:33 PM feature request #8195 (New): TaxonNamePopupEditor: offer Reference and RuleConsidered fields for replaced synonyms
in contrast to earlier considerations for *Replaced Synonyms* it is also important to enter data into the Reference a... Andreas Kohlbecker
12:58 PM Revision 460fe6fd (cdmlib): ref #8189 DataSourceConfigurer using ConfigFileUtil correctly
Andreas Kohlbecker
11:35 AM Revision ab611430 (taxeditor): ref #8189 organizing imports for ConfigFileUtil
Andreas Kohlbecker
11:26 AM Revision 55c390a0 (taxeditor): ref #8189 adapting taxeditor to changes in CdmUtils and ConfigFileUtil
Andreas Kohlbecker
09:08 AM bug #8190 (Resolved): Default FeatureTree throws exception
I extended the type check to also allow subtypes in the term tree Patrick Plitzner
08:53 AM Revision b7d3a480 (cdmlib): ref #8190 Fix potential NPE
Patrick Plitzner

03/21/2019

07:03 PM bug #8192: The curator must be able to unlock a published registration for edition
use the lock and unlock icons from fontawesome:
https://fontawesome.com/icons/lock-open?style=solid
https://fon...
Andreas Kohlbecker
06:32 PM bug #8192 (Closed): The curator must be able to unlock a published registration for edition
The curator sometimes needs to modify the data for a registration after it has been published.
Currently it is req...
Andreas Kohlbecker
07:01 PM bug #8194: LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name
Initializing the authorteam of the inReferences of the references loaded by the combobox should solve the problem. Andreas Kohlbecker
06:59 PM bug #8194 (Closed): LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name

Habe die Section des eines Namens die als nomenklatorische Referenz gesetzt war löschen wollen:
http://phycoba...
Andreas Kohlbecker
06:53 PM Revision cf9ba327 (cdmlib): ref #8189 cdmlib-remote.properties as not required property source fixes bug introduced in 9b55e525
Andreas Kohlbecker
06:46 PM feature request #8193 (Closed): TaxonNamePopupEditor: add select form element for Nomenclatural status
Enable to add a nomenclatural status from a subset of status (see TaxEditor).
Exception invalid name in valitation =...
Wolf-Henning Kusber
06:26 PM bug #8191 (Closed): ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked
By now when opening the ReferenceEditor for inReference of a TaxonName the user can not modify or set a new inreferen... Andreas Kohlbecker
06:04 PM Revision 7f0f28bb (cdmlib): upgrading jetty-maven-plugin to 9.4.15.v20190215
Andreas Kohlbecker
04:44 PM Revision 72cbb7ab (cdm-vaadin): ref #7356 foundation for selenide tests implemented
Andreas Kohlbecker
04:32 PM Revision 3870ac74 (cdm-vaadin): ref #7356 adding selenide and spring-boot dependencies
Andreas Kohlbecker
04:30 PM Revision 17f913df (cdmlib): ref #8189 removing unnecessary dependency from cdmlib-commons
Andreas Kohlbecker
04:26 PM Revision 2d4efdc3 (cdm-vaadin): ref #7356 moving VaadinServletConfiguration from web.xml into CdmVaadinConfiguration
Andreas Kohlbecker
04:25 PM bug #8189 (Resolved): Allow configuration of 'user.home' via the spring environment
close issue if the changes are not causing any problems. Andreas Kohlbecker
12:15 PM bug #8189 (Closed): Allow configuration of 'user.home' via the spring environment
By now it is only possible to configure the `${user.home}` via the system properties. That means the only option to s... Andreas Kohlbecker
03:47 PM Revision 8b5bca23 (taxeditor): ref #8115 Use cached feature tree in factual data view context menu
Patrick Plitzner
03:47 PM Revision 1a4fdfe5 (cdmlib): Remove useless check
Patrick Plitzner
03:47 PM Revision 1ebbb842 (cdmlib): ref #8190 Allow sub term types for FeatureNode relations and trees
Patrick Plitzner
03:03 PM bug #8190 (In Progress): Default FeatureTree throws exception
Patrick Plitzner
01:30 PM bug #8190 (Closed): Default FeatureTree throws exception
When there are Characters and Features in the data base and the default feature tree is created it will fetch all of ... Patrick Plitzner
03:02 PM Revision 1b16a0e4 (taxeditor): ref #8058: add common name language preference - continue
Katja Luther
02:56 PM feature request #8058: Further issues for (local) preferences
the common name language preference is added. Katja Luther
02:46 PM Revision 0df7271b (cdmlib): ref #8189 ConfigFileUtil as spring bean in deafult context and tests implemented
Andreas Kohlbecker
02:46 PM Revision 110c97a6 (cdmlib): ref #8189 moving method getFolderSeperator() back to CdmUtils
Andreas Kohlbecker
02:46 PM Revision a23c2a31 (cdmlib): ref #8189 moving ConfigFileUtil and AccountStore to cdmlib-persistence:eu.etaxonomy.cdm.config
Andreas Kohlbecker
02:46 PM Revision 44b37b30 (cdmlib): ref #8189 moving folder funstins from CdmUtils to ConfigFileUtil
Andreas Kohlbecker
02:46 PM Revision 9b55e525 (cdmlib): ref #8189 CdmUtils uses the spring environment to find user.home
Andreas Kohlbecker
02:46 PM Revision cb88358a (cdmlib): ref #7356 upgrading goggle guava to 23.0 to conform to seleninde dependency which is used in cdm-vaadin
Andreas Kohlbecker
02:46 PM Revision 4c54f20c (cdmlib): removing test method
Andreas Kohlbecker
02:46 PM Revision d12f4695 (cdmlib): ref #8188 configurable.xml loads hibernate properties from src/test/resources/hibernate.properties - cdmlib
Andreas Kohlbecker
02:46 PM Revision 28eb7ddd (cdmlib): ref #7356 avoiding spring bean dependency cycle by adding @Lazy
Andreas Kohlbecker
02:46 PM Revision 74547d6a (cdmlib): ref #7356 throwing RuntimeException in case of severe web application misconfiguration instead of just logging
Andreas Kohlbecker
02:43 PM Revision 2de8ed33 (taxeditor): ref #8058: add common name language preference
Katja Luther
02:42 PM Revision d942cf2e (cdmlib): ref #8058: add commonNameLanguage to PreferencePredicate
Katja Luther
01:13 PM Revision 35ff7f48 (cdmlib-apps): db-name change in IAPTActivator
Andreas Kohlbecker
11:43 AM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
Specimen Editor: auch der erste Typus lässt sich nicht speichern (kritisch)
Andreas Kohlbecker
11:34 AM Revision 1b2d19db (cdmlib): ref #6627: add import of taxon interactions to cdmlight - continue
Katja Luther
10:35 AM Revision 1e610f38 (cdmlib): ref #6627: add import of taxon interactions to cdmlight
Katja Luther

03/20/2019

04:58 PM Revision 3c64d726 (taxeditor): Refresh feature and character details view when setting feature supports
Patrick Plitzner
04:45 PM Revision daeb8ba2 (taxeditor): ref #8146 Adapt "add term wizard" to termType restriction
Patrick Plitzner
04:41 PM feature request #7975: Implement a block to display name relations
Validation:
![](picture156-1.png)
Replacement name:
Wie Validation behandeln,
Zudem wird
1. beim Widg...
Andreas Kohlbecker
03:10 PM Revision cab6ecd7 (cdm-vaadin): ref #8188 configurable.xml loads hibernate properties from src/test/resources/hibernate.properties - cdm-vaadin
Andreas Kohlbecker
02:54 PM bug #8188 (In Progress): Allow configuring hibernate properties via properties file
Andreas Kohlbecker
02:54 PM bug #8188 (Closed): Allow configuring hibernate properties via properties file
To allow for more flexible configuration of test environments it would be great if the hibernate properties which are... Andreas Kohlbecker
11:14 AM Revision a1095eff (cdmlib): fix regression in fieldUnitDTO with wrong collector+collectionNr
Katja Luther
11:10 AM feature request #8187 (New): Use Spring Environment instead of custom code in AbstractWebApplicationConfigurer
the method `AbstractWebApplicationConfigurer.findProperty(String property, boolean required)` implements a similar st... Andreas Kohlbecker
09:56 AM Revision 86f28971 (taxeditor): fix #7428: use eventbus for propagating update information
Katja Luther
08:06 AM Revision 903b5970 (taxeditor): Adapt to model change (set termType in constructor)
Patrick Plitzner
08:01 AM Revision 9b4264ec (cdmlib): Set term type in constructor for term and voc DTO
Patrick Plitzner

03/19/2019

07:31 PM feature request #7975: Implement a block to display name relations
Examples correctly in PhycoBank as use case for output improvement:
Example Validation
https://www.phycobank.org...
Wolf-Henning Kusber
02:30 PM feature request #7428: Open issues for updating open data while subtree is updated
please review.
Bulkeditor and nameeditor are updated.
Katja Luther
02:11 PM Revision 630c2c5d (taxeditor): ref #7428: fix selection for updated titlecache
Katja Luther
01:47 PM Revision a3d5eccd (cdmlib-apps): update to GreeceImageActivator
Andreas Müller
01:47 PM Revision d29ad503 (cdmlib-apps): update mysql driver in commented unitils datasource
Andreas Müller
01:47 PM Revision 5ec402ba (cdmlib-apps): adapt GermanSLImporBase inheritance
Andreas Müller
01:36 PM bug #8115 (Resolved): NPE when moving factual data
this problem is fixed. Katja Luther
01:29 PM bug #4545 (Resolved): Implement TeamOrPersonBaseSelectionDialog
please review.
TeamOrPerson is used for example for TaxonNodeAgentRelations or for authors in references
Katja Luther
01:29 PM Revision b7a38212 (taxeditor): ref #4545: reference author is of type teamOrPerson
Katja Luther
01:27 PM Revision 23d182dd (taxeditor): ref #8115: fix move facts when not persisted facts exist
Katja Luther
01:15 PM Revision 4a8227d3 (cdmlib): ref #4545: add getUuidAndAbbrevTitleCache with class parameter
Katja Luther
12:57 PM Revision dfc1e4fa (cdmlib): ref #4545: add getUuidAndAbbrevTitleCache with class parameter
Katja Luther
12:49 PM feature request #8185 (Feedback): Type layout
Hi Andreas, the same kind of formatting has formerly also been requested by Walter.
I consider this a very good so...
Andreas Kohlbecker
12:29 PM Revision 7bea8087 (taxeditor): ref #4545: add TeamOrPersonSelectionDialog
Katja Luther
09:52 AM feature request #8186 (Duplicate): List view order
ordering by registration numbers is hardly possible, see #7978.
Furthermore is this ticket a duplicate of #8157
Andreas Kohlbecker

03/18/2019

06:02 PM feature request #8186 (Duplicate): List view order
List view in Vaadin should be arranged from new (high registration numbers) to old.
Wolf-Henning Kusber
05:51 PM feature request #8185 (Feedback): Type layout
Type (as is):
Holotype: (BM BM123)
should be:
Holotype: BM (BM123)
see for example: https://www.phycobank...
Wolf-Henning Kusber
05:45 PM bug #8184 (Closed): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
In Vaadin, type specimen editor a new line is created when a typ is selected.
This functions in FireFox. This does n...
Wolf-Henning Kusber
05:16 PM bug #8183 (In Progress): Make Feature IndividualAssociation a generalization of Specimen and Observation
until now this has been handled in the static method Feature.INDIVIDUALS_ASSOCIATION() which is not the correct place... Andreas Müller
03:55 PM bug #8115 (Feedback): NPE when moving factual data
This setup now works because we have to save before dragging the abstract to the other description
There is howeve...
Patrick Plitzner
02:30 PM Revision 0ac58cd8 (cdmlib): minor
Andreas Müller
02:30 PM Revision 268e5f20 (cdmlib): cleanup
Andreas Müller
02:07 PM task #7515: TypeDesignationStatusComparator to sort by vocabulary first and then by term order
Andreas Kohlbecker wrote:
> The Taxeditor should be more resilient against unusual data.
>
> 1. Suggestion as d...
Katja Luther
01:33 PM feature request #7433: new service method to get specimen by genetic AccessionNumber
this service method is implemented, but controller method is still missing Katja Luther
01:30 PM feature request #8182 (In Progress): show blast search result
the json result of the blast search should be displayed and the accession number needs to be a link to the correspond... Katja Luther
01:20 PM bug #8148 (Resolved): Login Dialog cuts off information
I put it to resolved to remind me reviewing.
Or are there still open issues?
Andreas Müller
01:04 PM bug #8148: Login Dialog cuts off information
I adapted the exception section and I could not reproduce the cutted advanced section (with the actual nightly). Coul... Katja Luther
12:57 PM Revision 8b0c5128 (taxeditor): delete hibernate.cfg.xml
Katja Luther
12:13 PM Revision 53bd0d7f (taxeditor): ref #8178 Adapt to service layer change
Patrick Plitzner
12:10 PM Revision 472739e6 (taxeditor): ref #8178 Auto-create presence-absence character
Patrick Plitzner
12:02 PM Revision 65b3a18d (taxeditor): ref #8178 Adapt to service layer change
Patrick Plitzner
12:02 PM Revision 7b1abbc3 (taxeditor): Fix term type check for feature drop adapter
Patrick Plitzner
11:55 AM feature request #5890 (New): Implement auto-suggest for data portal
Patrick Plitzner
11:07 AM Revision fe4a6e83 (taxeditor): ref #3836: add the modifier vocabulary to the combobox
Katja Luther
09:39 AM Revision 0a9b7662 (cdmlib): ref #8178 Add vocabulary parameter to create child node service method
Patrick Plitzner

03/15/2019

03:30 PM Revision a296b200 (cdmlib): ref #8169 adding missing @Transactional to VersionableServiceBase.isDeletable()
Andreas Kohlbecker
03:29 PM bug #8169: avoid factory.openSession() in DaoBase
VersionableServiceBase.isDeletable misses the @Transactional(readOnly = true) annotation! Andreas Kohlbecker
03:25 PM bug #8169: avoid factory.openSession() in DaoBase
Here is a case found in the server log (occurred 6x in a couple of hours):
~~~
[phycobank] 2019-03-15 10:27:44,...
Andreas Kohlbecker
01:57 PM Revision 4186a152 (cdm-dataportal): ref #7755: filter import sources for occurrences
Katja Luther
01:13 PM Revision a1ce57ce (cdm-dataportal): ref #7755: rename baseURL for occurrences to occurrence/uuid
Katja Luther
12:02 PM Revision abe0b021 (cdm-dataportal): ref #7755: some order issues in specimen detail page
Katja Luther
11:44 AM feature request #8181 (New): Further features for bulk editors
this is a ticket to collect all wanted features for bulkeditors:
Advanced search or column filter options:
* ...
Katja Luther
10:44 AM feature request #7755: Implement advanced detail page for occurrences
mail from AM:
Hallo Katja,
ich bin im Zuge von FoG über die Specimenseite gestolpert. Sehr schön, dass da jetzt...
Katja Luther
09:21 AM feature request #8180 (Closed): Add property term "Presence/Absence" to CDM default terms
When describing a specimen via Characters (almost) all structures may or may not exist. To be able to describe if a s... Patrick Plitzner
08:35 AM Revision ce7faf74 (cdmlib): ref #8162 update to model cache
Patrick Plitzner
08:18 AM Revision 31e57990 (cdmlib-apps): Adapt imports to tem model changes
Patrick Plitzner

03/14/2019

06:26 PM bug #8179 (New): PopupEditorException
Type name editor, PopupEditorException
when saving a name type of a genus
in Workingset
http://api.phycobank.org...
Wolf-Henning Kusber
04:05 PM Revision 63311bd9 (cdm-vaadin): multiple test datasources for tesing multiple test suites
Andreas Kohlbecker
02:48 PM Revision 7dc9bbbb (taxeditor): ref #3836: add modifier to description elements
Katja Luther
02:12 PM feature request #8178 (Rejected): Auto-create absence/presence character for every structure
Presence/Absence Property (PA)
* Jede Strukture muss in Kombination mit PA-Property einen Character bilden.
* Bei...
Patrick Plitzner
02:04 PM feature request #8121 (In Progress): Allow selecting structural/property modifiers when creating a character
Patrick Plitzner
01:56 PM feature request #6849 (In Progress): [DISCUSS] How to handle "kind of" term creation in TermEditor
Patrick Plitzner
01:37 PM Revision d9f54449 (taxeditor): ref #7428: updateEditors method in AbstractUtility class
Katja Luther
01:07 PM Revision 46567e3a (cdmlib): ref #6413 Throw exception for more than 1 or 0 FieldUnits
Patrick Plitzner
01:05 PM Revision 28716614 (cdmlib): Adapt test to change in clone() method
Patrick Plitzner
12:16 PM Revision f9fbd38a (taxeditor): ref #6413 i18n
Patrick Plitzner
12:11 PM feature request #6413 (Resolved): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
The first implementation allows selection one of the already existing specimen type designation for creating the dupl... Patrick Plitzner
12:07 PM Revision d436d97b (taxeditor): code cleanup
Patrick Plitzner
12:00 PM Revision 18a3973f (taxeditor): ref #6413 Disable non-editable text fields
Patrick Plitzner
12:00 PM Revision 80a540f2 (taxeditor): ref #6413 Implement type duplication in type detail section
Patrick Plitzner
12:00 PM Revision 0661b3e6 (taxeditor): ref #6413 Add "Clone Type Duplicate" option to name details view
Patrick Plitzner
12:00 PM Revision 899a348b (taxeditor): Fix copy&paste error
Patrick Plitzner
12:00 PM Revision 99366401 (cdmlib): ref #6413 Add service method for duplicating type specimen
Patrick Plitzner
12:00 PM Revision 56b642e9 (cdmlib): Fix clone() method of SpecimenOrObservationBase
Patrick Plitzner
 

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