Activity
From 03/07/2019 to 04/05/2019
04/05/2019
- 03:41 PM feature request #8146: Adapt taxeditor UI to structure and property term type
- Katja Luther wrote:
>
> Maybe it would be nice to have a possibility to distinguish between the term tree types. n... - 09:59 AM feature request #8146 (Feedback): Adapt taxeditor UI to structure and property term type
- tested on nightly:
open term editor for structures, create a new vocabulary, try drag&drop from one vocabulary to ... - 03:38 PM bug #8222 (Closed): Deleting a type designation from a name is directly persisted
- The name editor is set to dirty but when closing it without saving the designation is deleted anyway.
- 03:23 PM feature request #6413 (Resolved): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
- The buttons are now updated with every add or remove.
The icon is from the Eclipse icon set and it is standard sized. - 10:48 AM feature request #6413 (Feedback): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
- 10:47 AM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
- 
the item is really small and after adding the first typedesignation the view is not updated,... - 02:39 PM Revision cec74f11 (taxeditor): ref #6413 Update toolbar when adding/deleting type designations
- 02:39 PM Revision 5ef12561 (taxeditor): ref #6413 Use UUIDS for service method parameters
- 02:34 PM Revision 8b7b8537 (cdmlib): ref #6413 Replace service method parameters with UUIDs
- 01:53 PM feature request #8150 (Closed): Allow editing the representation label of characters in details view
- works fine now.
- 10:44 AM feature request #8150 (Resolved): Allow editing the representation label of characters in details view
- Katja Luther wrote:
> in the character editor the label should be updated, too.
This is now fixed - 09:10 AM feature request #8150 (Feedback): Allow editing the representation label of characters in details view
- in the character editor the label should be updated, too.
- 01:37 PM bug #8148: Login Dialog cuts off information
- this is fixed now.
- 01:31 PM bug #8148 (Resolved): Login Dialog cuts off information
- Applied in changeset commit:taxeditor|deec2311a69183f731cc1e6ddf7f967cba6c0241.
- 01:37 PM Revision 9e35891c (taxeditor): fix #8148: add widthHint to advanced composite
- 01:31 PM Revision deec2311 (taxeditor): fix #8148: add widthHint to styledTextfield
- 01:26 PM Revision 63878e5a (taxeditor): ref #8136: externalization
- 01:18 PM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
- the problem for references is that if cacheStrategy.getFullAbbrevTitleString(this) returns null, the abbrevTitleCache...
- 11:10 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also when rerunning on references I always get the same result (upd... - 10:20 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
- Andreas Müller wrote:
> Also when rerunning on references I always get the same result (updated objects 2669), secon... - 10:09 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
- Andreas Müller wrote:
> When running on references (in rem_conf_am) I only get no task shown:
>
now it looks ... - 12:46 PM Revision 09015fb4 (taxeditor): ref #8136: externalization
- 12:20 PM feature request #8136: Implement sources for type designations in TaxEditor
- Katja Luther wrote:
> now there is a message asking if the user really wants to change the type away from lectotype ... - 12:20 PM feature request #8136 (Resolved): Implement sources for type designations in TaxEditor
- now there is a message asking if the user really wants to change the type away from lectotype when a citation exist.
- 11:19 AM feature request #8136: Implement sources for type designations in TaxEditor
- Validation already exists by the way #8139 but needs validation framework in place to be available
- 11:10 AM feature request #8136 (Feedback): Implement sources for type designations in TaxEditor
- To be honest, simply removing the reference is not my preferred solution. Is there a reason why we can't do like with...
- 09:19 AM feature request #8136: Implement sources for type designations in TaxEditor
- Tested on nightly: The reference of any *lectotype is removed when switching the designation status to any non-lectot...
- 09:03 AM feature request #8136 (Resolved): Implement sources for type designations in TaxEditor
- 08:55 AM feature request #8136: Implement sources for type designations in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > But maybe this should be handled in the library? When updating a ty... - 12:17 PM Revision b0ed30f0 (taxeditor): ref #8136: add warning message when changing type away from lectotype and citation exist
- 11:42 AM feature request #8175 (Closed): add name facts to cdm light export
- Andreas Müller wrote:
> I think if you have tested it intensively it may be correct. For me it would take a lot of t... - 11:22 AM feature request #8175 (Feedback): add name facts to cdm light export
- I think if you have tested it intensively it may be correct. For me it would take a lot of time to test.
Only ques... - 09:07 AM feature request #8175: add name facts to cdm light export
- tested on nighlty with rem_conf_am:
created a namefact for Dianthella and exported subtree of Facchinia in classif... - 11:26 AM feature request #7428 (Resolved): Open issues for updating open data while subtree is updated
- I tested again just now and it works as expected. The bulk editor also updates correctly
- 10:04 AM feature request #7428: Open issues for updating open data while subtree is updated
- there was an update yesterday (Revision 78bbc734), maybe you tested before? I tested again on nightly and the bulkedi...
- 11:14 AM feature request #8139: [Rule] Validate lectotype sources
- no idea why this was in model change milestone
- 11:11 AM bug #8115 (Closed): NPE when moving factual data
- This now works as expected
- 10:38 AM bug #8115 (Resolved): NPE when moving factual data
- now drag & drop is only possible when neither the target nor the source description containing not persisted elements.
- 10:51 AM feature request #8044: Add "Move to..." menu to term editor
- This is still an experimental feature which only shows up when the flag is set. I would either move this ticket to th...
- 09:15 AM feature request #8044 (Feedback): Add "Move to..." menu to term editor
- I would name it move feature as child or something like this because in the wizard you can choose the parent. Maybe y...
- 10:39 AM Revision 049fc82f (taxeditor): ref #8150 Refresh label in CharacterEditor when editing in detail view
- 10:29 AM task #8162 (Closed): Move term related classes from model.common to model.term
- I cannot see any more term related classes in the common package
- 09:31 AM task #8162: Move term related classes from model.common to model.term
- looks fine.
- 09:28 AM bug #8190: Default FeatureTree throws exception
- Seems to work.
I added some characters to rem_conf_am and got no exception when opening/working with factual data view. - 09:22 AM feature request #8153 (Closed): Adapt cdmlib to FeatureNode/FeatureTree model changes
- I had a look on the changesets and it looks ok, so I close this ticket. For the generics we can open a new ticket.
- 09:10 AM bug #8088: Open taxon node wizard issues
- The exception when creating a new taxon is now also fixed. Tested on nightly
- 08:50 AM bug #8088 (Resolved): Open taxon node wizard issues
- 09:03 AM feature request #8147 (Resolved): Add "plural" to representation detail element
- Fixed the plural field and the "Finish" button
- 09:00 AM feature request #7865: Remaining factual data view label issues
- Works as excpected.
Tested on nightly. Added a factual data set and open the lock to edit the label, after save the ... - 08:45 AM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
- Tested on nightly:
* Created a specimen description element and set modifier and Modifying text
* Closed and re-o...
04/04/2019
- 06:06 PM Revision c4224185 (taxeditor): ref #8147 Code cleanup
- 06:06 PM Revision a06ac8f6 (taxeditor): ref #8147 Enable "Finish" only if any data is present
- 04:32 PM Revision 78bbc734 (taxeditor): update bulkeditor if element of list of taxa contained in model
- 03:18 PM Revision 2ba74e7b (taxeditor): ref #8147 Store representation if only plural is set
- 03:18 PM Revision b014556e (taxeditor): Show path of structure and property terms in character details view
- 02:56 PM feature request #8147: Add "plural" to representation detail element
- What I did:
* open any term, e.g. Feature "Description" in term editor
* open translation editor
* choose German... - 09:51 AM feature request #8147: Add "plural" to representation detail element
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > It works in Details View. In Translation Editor the value is no... - 09:25 AM feature request #8147: Add "plural" to representation detail element
- Andreas Müller wrote:
> It works in Details View. In Translation Editor the value is not stored if only plural is ad... - 11:47 AM bug #8111: User selection dialog for groups does not filter out existing users
- Andreas Müller wrote:
> I tested with the latest version. Adding a group to a member seems to work correctly. Adding... - 11:42 AM bug #8111: User selection dialog for groups does not filter out existing users
- I tested with the latest version. Adding a group to a member seems to work correctly. Adding a user to a group is not...
- 11:09 AM bug #8111: User selection dialog for groups does not filter out existing users
- Can you write a test which shows that this problem is really due to merge?
By the way when calling merge saveOrUpd... - 10:55 AM bug #8111: User selection dialog for groups does not filter out existing users
- the selection dialog is fixed, but the saving still does not work.
- 10:41 AM bug #8111: User selection dialog for groups does not filter out existing users
- Andreas Müller wrote:
> Katja Luther wrote:
> > Another point, the cascading from group to member is not implemente... - 10:38 AM bug #8111: User selection dialog for groups does not filter out existing users
- Katja Luther wrote:
> Another point, the cascading from group to member is not implemented. Adding or deleting a mem... - 10:19 AM bug #8111: User selection dialog for groups does not filter out existing users
- Another point, the cascading from group to member is not implemented. Adding or deleting a member is not saved when s...
- 08:23 AM bug #8111: User selection dialog for groups does not filter out existing users
- The dialog is created in SelectionDialogFactory. But `null` is passed as an argument which leads to this exception. @...
- 11:34 AM bug #8221 (New): When changing nomenclatural code the name detail elements are not available anymore
- when changing the nomenclatural code the name details are not available anymore, reopening the taxon solves the probl...
- 11:30 AM Revision 428a2961 (taxeditor): ref #8096: deduplicate message in progress bar
- 11:29 AM feature request #8136: Implement sources for type designations in TaxEditor
- Katja Luther wrote:
> But maybe this should be handled in the library? When updating a typedesignation check whether... - 11:06 AM feature request #8136: Implement sources for type designations in TaxEditor
- Andreas Müller wrote:
> Patrick Plitzner wrote:
> > tested on nightly.
> >
> > Changing to any *lectotype will s... - 10:55 AM feature request #8136 (Feedback): Implement sources for type designations in TaxEditor
- Patrick Plitzner wrote:
> tested on nightly.
>
> Changing to any *lectotype will show the reference related eleme... - 11:20 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
- Also when rerunning on references I always get the same result (updated objects 2669), second time I would expect 0.
... - 11:17 AM feature request #8096: Implement CacheUpdater as long running task with correct progress monitoring
- When running on references (in rem_conf_am) I only get no task shown:
 - 11:13 AM feature request #8096 (Feedback): Implement CacheUpdater as long running task with correct progress monitoring
- I get a strange duplication of task and progress now:
 - 11:09 AM Revision 310480f4 (taxeditor): ref #8136: remove citation if changed away from lectotype
- 10:53 AM Revision 2040fc2c (taxeditor): ref #8111: fix selection of user
- 10:09 AM Revision 423bae12 (cdmlib): deprecate isNomenclaturallyRelevant
- 10:05 AM Revision 3f0fc6a2 (cdmlib): javadoc for DefaultMatchStrategy
- 09:57 AM bug #8088: Open taxon node wizard issues
- this should be fixed with the last commit in cdmlib
- 09:55 AM Revision 30eb4609 (cdmlib): ref #8088: fix LIE in saveTaxonNode
- 09:38 AM Revision 7a7ac81c (taxeditor): revert changes in cdmServiceCacher
- 09:22 AM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
- Andreas Kohlbecker wrote:
> in this case the following properties are changed behind the scenes:
>
>
> ~~~
> ... - 09:12 AM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
- Andreas Kohlbecker wrote:
> Does this come from the `DefaultMatchStrategy`?
>
> What is this `DefaultMatchStrateg... - 09:13 AM bug #7541: Insufficient rights lead to missing focus in name editor
- I tested on nightly and rem_conf_am:
* Created a user "noTaxon" and a group "rightless" with two authorities ROLE_... - 09:13 AM Revision c2e4881e (taxeditor): changes in CdmServerInfo
- 08:33 AM feature request #8124: Activate Name Facts in Taxeditor
- Tested on nightly:
* I selected a name in the bulk editor
* Creation of name description works
* The list of ava... - 07:54 AM bug #8211: Trigger new search when clicking on identifier search
- Andreas Müller wrote:
> For me it does not work. I tested on test/euromed.
>
> * Open reference selection dialog... - 07:45 AM feature request #8146: Adapt taxeditor UI to structure and property term type
- I copied additivity_ontology to my local DBs and connected with the taxeditor. Seems like it worked.
: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
- Does this come from the `DefaultMatchStrategy`?
What is this `DefaultMatchStrategy` for? This class completely lac... - 07:00 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
- in this case the following properties are changed behind the scenes:
~~~
modified property found: protectedTit... - 06:58 PM feature request #8153 (Resolved): Adapt cdmlib to FeatureNode/FeatureTree model changes
- from my side we can close it, but I didn't check full code.
Patrick, could you still add "open issues" if you know w... - 06:53 PM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
- please do first review on nightly
- 06:53 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
- please do first review on nightly
- 06:52 PM bug #8190: Default FeatureTree throws exception
- please do first review on nightly
- 06:51 PM bug #7541: Insufficient rights lead to missing focus in name editor
- please do first review on nightly
- 01:21 PM bug #7541 (Resolved): Insufficient rights lead to missing focus in name editor
- The problem of this ticket is solved. With rem_conf_am and the nightly editor I could not reproduce the missing focus.
- 06:50 PM feature request #8124: Activate Name Facts in Taxeditor
- please do first review on nightly
- 06:49 PM feature request #8150: Allow editing the representation label of characters in details view
- please do first review on nightly
- 06:48 PM feature request #8175: add name facts to cdm light export
- please do first review on nightly
- 06:47 PM bug #8111 (Feedback): User selection dialog for groups does not filter out existing users
- WIth test/rem_conf_am I could not open the dialog at all, but got
~~~
java.lang.NullPointerException
at eu.etax... - 06:43 PM bug #8148 (Feedback): Login Dialog cuts off information
- on the right side there is still missing 1 letter. Not serious but not looking so nice.
- 06:42 PM bug #8148: Login Dialog cuts off information
- 
- 06:37 PM bug #8143 (Closed): It is possible to open multiple instances of the login dialog
- Seems to work.
- 06:35 PM feature request #8147 (Feedback): Add "plural" to representation detail element
- It works in Details View. In Translation Editor the value is not stored if only plural is added. Together with label ...
- 06:23 PM bug #8151 (Closed): after creating a new synonym and pasting a name string the default string is not removed
- Seems to work
- 01:30 PM bug #8151: after creating a new synonym and pasting a name string the default string is not removed
- Tested on nightly. This works.
- 06:21 PM task #8162: Move term related classes from model.common to model.term
- I think this is well tested in the meanwhile, but maybe everybody can shortly have a look if (s)he thinks that everyt...
- 06:21 PM Revision 33bc4ab8 (cdm-vaadin): fixing initial focus for LoginDialog
- 06:19 PM bug #8220 (In Progress): incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
- We, Henning and Andreas decided on the following solution:
* the click on the *existing name* button will open the... - 06:18 PM bug #8211 (Feedback): Trigger new search when clicking on identifier search
- For me it does not work. I tested on test/euromed.
* Open reference selection dialog,
* entered "6069704" => se... - 01:34 PM bug #8211: Trigger new search when clicking on identifier search
- Tested by switching between identifier and standard search in latest nightly. This works.
- 05:59 PM feature request #8146 (Resolved): Adapt taxeditor UI to structure and property term type
- I adjusted the update script. To test if the script works correctly now we should take a production database and move...
- 03:57 PM feature request #8146 (Feedback): Adapt taxeditor UI to structure and property term type
- Patrick Plitzner wrote:
> Katja Luther wrote:
> > deleting a feature from termTree throws an exception but removing... - 03:51 PM feature request #8146: Adapt taxeditor UI to structure and property term type
- Katja Luther wrote:
> deleting a feature from termTree throws an exception but removing is successful
>
This ... - 03:15 PM feature request #8146: Adapt taxeditor UI to structure and property term type
- * restricting tree selection seems to work
* drag&drop of terms into a term tree works as expected
- 03:09 PM feature request #8146: Adapt taxeditor UI to structure and property term type
- deleting a feature from termTree throws an exception but removing is successful
~~~ text
login : admin
editor ... - 01:22 PM feature request #8146: Adapt taxeditor UI to structure and property term type
- For review check the points in the description and play around with vocabularies and trees of different term types.
... - 05:47 PM Revision 6ae3aa93 (cdmlib): ref #8153 adapt ColumnAdder and ColumnTypeChanger to handle NOT NULL correctly for auditing tables
- 05:09 PM Revision a3cfc8c0 (cdm-vaadin): ref #8218 better extraction of the actual cause to be delegatged in the DelegatingErrorHandler
- 04:39 PM feature request #8136: Implement sources for type designations in TaxEditor
- tested on nightly.
Changing to any *lectotype will show the reference related elements. The reference and the deta... - 04:30 PM feature request #8044: Add "Move to..." menu to term editor
- The menu item is only shown when experimental features are enabled. Therefore this can be tested later. Also this opt...
- 03:52 PM feature request #8044 (Resolved): Add "Move to..." menu to term editor
- As the term editor is not experimental this feature is also not experimental. Therefore it should be tested for corre...
- 03:05 PM feature request #8044 (Closed): Add "Move to..." menu to term editor
- 03:05 PM feature request #8044 (Resolved): Add "Move to..." menu to term editor
- Closing this ticket because it is implemented but still experimental.
- 04:06 PM bug #8088 (Feedback): Open taxon node wizard issues
- Tested on nightly.
* taxon selection is possible in edit and new wizard
* #8088#note-7 works
* #8088#note-9 stil... - 03:57 PM Revision 03a2b1f4 (taxeditor): ref #8136 Show micro citation in details view
- 03:47 PM feature request #7428 (Feedback): Open issues for updating open data while subtree is updated
- Tested on nightly.
* Ask for saving before operation starts. -> this is fixed
* Only na... - 03:15 PM feature request #8178: Auto-create absence/presence character for every structure
- still experimental feature which will be fully implemented in next release
- 03:12 PM feature request #6849: [DISCUSS] How to handle "kind of" term creation in TermEditor
- Moving to next milestone for further discussion
- 03:02 PM Revision cf7529d5 (taxeditor): ref #8044 Make "Move to..." experimental
- 02:51 PM Revision 6bf65877 (taxeditor): ref #8136: save citation of typeDesignation
- 02:00 PM feature request #8096 (Resolved): Implement CacheUpdater as long running task with correct progress monitoring
- Patrick Plitzner wrote:
> I tested updating caches with all options on on the lates nightly. The progress bar shows ... - 01:41 PM feature request #8096 (Feedback): Implement CacheUpdater as long running task with correct progress monitoring
- I tested updating caches with all options on on the lates nightly. The progress bar shows the current work done and t...
- 01:59 PM Revision e627dccd (taxeditor): ref #8096: subtask name is the same as task name
- 01:55 PM Revision 5354f8db (taxeditor): ref #8115: drag&drop is not allowed for not persisted elements in source and target description
- 01:38 PM bug #8200: Changing title(cache) for factual data set not possible
- It's more a general question how this should be handled. So it is a question to all of us.
- 01:36 PM bug #8200: Changing title(cache) for factual data set not possible
- should this be moved back to PP?
- 12:54 PM bug #8200 (Feedback): Changing title(cache) for factual data set not possible
- > High priority as unexpected behavior and even wanted titles like "Moved from ..." can get lost this way.
The def... - 01:35 PM feature request #8122: Implement selection of modifier vocabulary for structures and properties
- Moving to next release as we have to discuss if this is really needed
- 01:28 PM feature request #8011 (Closed): Implement term search view
- Closing this ticket because it is implemented but still experimental.
- 01:26 PM bug #8115: NPE when moving factual data
- I tested on the latest nightly: The new description does not get deleted this time. But the new abstract that has bee...
- 01:20 PM feature request #8121 (Closed): Allow selecting structural/property modifiers when creating a character
- Closing this ticket because it is implemented but still experimental.
- 01:19 PM feature request #7923 (Closed): Add context menu and drag'n'drop to CharacterEditor
- Closing this ticket because it is implemented but still experimental
- 12:21 PM Revision 28c02ec4 (taxeditor): Remove "New kindOf" menu item
- 12:21 PM Revision b0b1cfbe (taxeditor): Remove character term editor menu item
- 10:32 AM Revision ee512dbf (taxeditor): ref #8189 using getCdmHomeDirFallback() when the appcontext is not yet available - 2
- 10:17 AM Revision bdc08221 (taxeditor): ref #8189 using getCdmHomeDirFallback() when the appcontext is not yet available
- 10:15 AM Revision 945508b5 (cdmlib): ref #8189 fallback method for getCdmHomeSubDir() and fixing bug in getCdmHomeDirFallback()
- 09:13 AM feature request #7920 (In Progress): Possibility to define area specific status selection
04/02/2019
- 07:25 PM bug #8220: incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
- Did I miss something?
Two points are important:
1) To avoid name duplicates
2) To prompt users to register the use... - 06:54 PM bug #8220 (Feedback): incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
- this needs to be discussed
- 06:52 PM bug #8220 (Closed): incomplete creation of blocking registration in case of registering existing name which misses the nomenclatural reference
- 
 - 06:32 PM bug #8219: Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
- this is most probably once again a problem related to a field of the reference modified during the data management do...
- 06:30 PM bug #8219 (Rejected): Permission denied when creating a new reference with existing inreference for which submitter has no UPDATE permission
- This happened in the following case.
* User andreas (submitter)
* regStart view
* create new reference with "*A... - 06:05 PM bug #8217 (Resolved): ToManyRelatedEntitiesComboboxSelect edit button not enabled
- Please review with user **submitter** and **curator**
- 01:51 PM bug #8217 (Closed): ToManyRelatedEntitiesComboboxSelect edit button not enabled
- In the TaxonNamePopupEditor the edit button of the Basionyms should always be enabled even if the editor which would ...
- 06:04 PM Revision e38b81a7 (cdm-vaadin): ref #8217 enabling ToManyRelatedEntitiesComboboxSelect and fixing read only state of AbstractCdmDTOPopupEditors
- 06:03 PM bug #8218 (Closed): Show appropriate error message when accessing RegistrationWorkingsetEditor without sufficient permissions
- 03:56 PM bug #8218 (Resolved): Show appropriate error message when accessing RegistrationWorkingsetEditor without sufficient permissions
- Applied in changeset commit:cdm-vaadin|bbe0f8d54845856f7642b54a6ecc96dc3bf7eaa2.
- 03:53 PM bug #8218 (Closed): Show appropriate error message when accessing RegistrationWorkingsetEditor without sufficient permissions
- The RegistrationWorkingsetEditor currently shows the default error dialog when being accessed without the required p...
- 05:50 PM Revision 6d74a77f (cdm-vaadin): ref #8217 proper setting of the readonly state for ToManyRelatedEntitiesListSelect fields
- 04:06 PM bug #7406 (Resolved): [CHECK] Check if all original source names of occurrences are correctly imported
- Should be resolved. Check again before closing.
- 04:03 PM bug #7406 (In Progress): [CHECK] Check if all original source names of occurrences are correctly imported
- Check results for bellis perennis in Sicily if no duplicate sources exist anymore. The duplicates can not be seen in ...
- 04:02 PM bug #7406: [CHECK] Check if all original source names of occurrences are correctly imported
- It looks like this is correct now. However, there were >3500 duplicates in emOccurrenceSource with same OccFk, Source...
- 03:56 PM Revision bbe0f8d5 (cdm-vaadin): fix #8218 implementing PermissionDeniedErrorHandler to handle all uncaught PermissionDeniedExceptions in a UI
- 03:49 PM Revision 61dee665 (taxeditor): ref #8146 Adjust term type check
- 02:16 PM Revision e05131c1 (cdm-vaadin): avoiding RegistrationWorkingsetPresenters to handle events from foreign view:
- - pushing common EditorActionContext methods up
- checking for own view in context root - 01:41 PM task #7798 (Resolved): [AM, ERS]: Import (freetext) nameInSource correctly
- Andreas Müller wrote:
> Eckhard noch fragen, was mit den Namen geschehen soll, bei denen LinkedName und FreeTextName... - 01:24 PM Revision 4adf618f (cdmlib): ref #8189 fixing invalid NULL check
- 12:06 PM feature request #5873: Implement rights&roles for TaxEditor distribution editor
- We should at least very soon know, how far rights&role work for distribution editor. And define what still needs to b...
- 11:32 AM Revision c1460d6c (cdmlib): ref #8189 removing useless trailing slashes
- 11:09 AM Revision da8a5db3 (cdmlib): toString() method for RegistrationWorkingSet
- 10:21 AM bug #8216 (New): Layout issue UI in IE
- Test with IE 11.0.115
Small layout issue: blue bar is not visilbe, see screen shot.
Functionality okay, including... - 08:30 AM Revision 2580ff7a (cdmlib): ref #8115: adapt test
04/01/2019
- 06:15 PM feature request #7548 (In Progress): RegistrationWorkingSetEditor loads slowly with big working sets
- 06:14 PM Revision fadb1f53 (cdm-vaadin): ref #7548 relaoding of the workingset only when a 'root' popupeditor has been closed
- 05:57 PM bug #8214 (In Progress): WeaklyRelatedEntityCombobox is not validated
- the field should only be set on error if the user tries to save the editor or when the focus leaved the field. Otherw...
- 05:53 PM bug #8214: WeaklyRelatedEntityCombobox is not validated
- please review
- 04:09 PM Revision 4d06c9a3 (cdmlib): ref #7433: add controller method to get dnaSample for given geneticAccessionnumber
- 04:07 PM Revision d54f179a (cdmlib): ref #8115: do not delete description when moving the last element
- 04:07 PM Revision 72631511 (cdmlib): ref #8096: minor
- 03:54 PM bug #7703: Multiple names cannot be shown in TypeDesignationDetailElement for specimens
- Moving to 5.7 because it doesn't have highest priority
- 03:48 PM Revision 341fa6e3 (cdmlib): ref #8190 Fix termType in FeatureNode creation
- 03:40 PM Revision d1ff60c6 (cdmlib): ref #7700:smaller changes in TypeDesignationManager (add fide citation)
- 03:26 PM Revision 865b0f31 (cdmlib): revert controller method in OccurenceListController
- 03:11 PM bug #8190: Default FeatureTree throws exception
- commit:cdmlib|6850fcf9bff05af4a123d77be88f98049d256423.
- 02:55 PM Revision 0e6db332 (cdmlib): adapt ConfigFileUtils to handle file access without appllication context
- 01:50 PM bug #8050 (Resolved): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- I consider this issue as being completed, please review
- 01:49 PM Revision 8feb2342 (cdmlib): ref #7433: add controller method to get dnaSample for given geneticAccessionnumber
- 01:14 PM bug #8211: Trigger new search when clicking on identifier search
- please review.
You need some references with additional identifiers. - 01:14 PM bug #8211 (Resolved): Trigger new search when clicking on identifier search
- Applied in changeset commit:taxeditor|fbd5dac1173dd4e19ba9e470b3d4726e0275ed08.
- 01:14 PM Revision fbd5dac1 (taxeditor): fix #8211: trigger new search if identifier search is selected
- 12:30 PM bug #8213 (Closed): MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!regStart
- problem solved.
- 12:28 PM bug #8213 (Resolved): MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!regStart
- Applied in changeset commit:cdm-vaadin|e001877db8b2aadba14c286801d7f23e91dee120.
- 12:28 PM Revision e001877d (cdm-vaadin): fix #8213 fixing db query for users witch have not created any references yet
- 11:32 AM task #7515 (In Progress): TypeDesignationStatusComparator to sort by vocabulary first and then by term order
- 11:32 AM task #7515: TypeDesignationStatusComparator to sort by vocabulary first and then by term order
- now TypeDesignationStatusComparator inherit from OrderedTermBaseComparator
- 11:27 AM Revision ba6cefb5 (cdmlib): ref #7515: TypedesignationStatusComparator inherit from OrderedTermComparator
- 11:24 AM feature request #8058 (In Progress): Further issues for (local) preferences
- I don't know why the dialog height is not set correctly.
The language issues are implemented. - 11:21 AM feature request #3836 (Resolved): Implement modifiers and modifying text for Description Elements in TaxEditor
- This is implemented now, please review
- 11:07 AM feature request #8215 (Closed): User demand: sorting order in reference editor
- Reference editor:
Author and in-Ref are sorting "contains".
User demand: sorting should be "begins with"
Example...
03/29/2019
- 06:44 PM Revision 7d6b1e3a (cdm-vaadin): ref #8107 ref #8099 reverting changes which have been picked from hotfix branch in favour of the better implementation in the develop branch
- 06:21 PM Revision ee53ccf7 (cdm-vaadin): fix #8214 fixing required validation for WeaklyRelatedEntityCombobox and centralizing related messages
- 06:21 PM bug #8214 (Resolved): WeaklyRelatedEntityCombobox is not validated
- Applied in changeset commit:cdm-vaadin|ddb31e64c51be1fd555999535863cebe68a6bd8d.
- 04:06 PM bug #8214 (Closed): WeaklyRelatedEntityCombobox is not validated
- WeaklyRelatedEntityComboboxes set to required are not validated on form submission.
If affects the TaxonNamePopupEditor - 06:20 PM Revision ddb31e64 (cdm-vaadin): fix #8214 fixing required validation for WeaklyRelatedEntityCombobox and centralizing related messages
- 04:02 PM Revision 580d5157 (cdm-vaadin): ref #8050 validing related name nomenclatural reference to require the user to add missing references when reusing an exising name
- 04:02 PM Revision 595150ac (cdm-vaadin): ref #8099 better logging of error conditions and more robust error handling in save()
- 03:59 PM bug #8213 (Closed): MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!regStart
~~~
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; ...- 03:23 PM Revision 9b7d57ff (cdmlib): ref #8189 providing fallback method to retrieve the ~/.cdmLibrary folder without application context
- 02:50 PM Revision 77056dda (cdm-vaadin): ref #8099 better logging of error conditions and more robust error handling in save()
- 02:39 PM bug #8099: Error saving name type designation editor due to problem in poupeditor context
- this exception augments another exception which happened during the save() operation. Any information on the original...
- 02:31 PM Revision 6062e4a0 (cdm-vaadin): ref #8050 validing related name nomenclatural reference to require the user to add missing references when reusing an exising name
- 02:03 PM Revision f020b39e (cdmlib): ref #7920: add new predicate for per area status preferences
- 02:00 PM Revision 683a21a5 (cdmlib): Fix potential NPE
- 12:50 PM Revision 12b0669d (taxeditor): ref #7932: add getBestMatching method using preferenceResolver in preferenceCache
- 12:50 PM Revision fa1dc0a8 (taxeditor): ref #7932: add getBestMatching method using preferenceResolver in preferenceCache
- 12:08 PM bug #8212: when closing media view, the factual data view becomes empty
- the problem is that it is not possible to set the focus on the name editor again after removing the media view. when ...
- 11:07 AM bug #8212 (New): when closing media view, the factual data view becomes empty
03/28/2019
- 07:55 PM feature request #7860: [Master] Remaining E+M editor issues
- Urgent for E+M and therefore should be handled latest in 5.7. But especially important is the task covered by #7920
- 07:52 PM feature request #7920: Possibility to define area specific status selection
- This is urgent for E+M and should be handled very soon. Latest in 5.7 but if possible in 5.6
- 07:34 PM task #7455 (Resolved): [Check] Check all markers for correctnes
- After import we should still check if need those markers with small count. Therefore do not close completely.
- 02:09 PM feature request #7865 (Resolved): Remaining factual data view label issues
- this should be fixed by fixing #8200
- 02:08 PM bug #8200 (Resolved): Changing title(cache) for factual data set not possible
- I replaced the label with a toggleable cache field.
How it works now: When setting the cache to unprotected (closi... - 02:04 PM Revision fd9044a1 (taxeditor): ref #8200 Replace description label with cache element in details view
- - Fix potential cache update problems
- 01:07 PM Revision e6d23538 (taxeditor): ref #8200 Remove unnecessary refresh
- 10:59 AM bug #8211 (Closed): Trigger new search when clicking on identifier search
- in reference search dialog a new search should be triggered if identifier search is clicked
- 10:09 AM bug #8210 (New): During search in bulk editor it is not possible to select items
- As running a search is done in another thread and the list is updated asynchronously it is not possible to select an ...
- 08:47 AM task #8209 (Closed): use ellypsed references for all reference comboboxes
- use the `ReferenceEllypsisFormatter` which has been implemented for #7951 in all reference comboboxes
- 08:40 AM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- Wolf-Henning Kusber wrote:
> Solution 1 should also preclude name duplicates.
this should be handled in a separat... - 08:39 AM feature request #8121 (Resolved): Allow selecting structural/property modifiers when creating a character
- 08:39 AM feature request #8208 (New): Allow selecting property modifiers when creating a character
- copied from #8121
- 08:38 AM feature request #8207 (New): RegistrationUI: helps avoid name duplicates
- When ever a user is about to create a new name, the system should check for potential duplicates of the name to be cr...
- 08:34 AM feature request #7923 (Resolved): Add context menu and drag'n'drop to CharacterEditor
- 08:33 AM feature request #8146 (Resolved): Adapt taxeditor UI to structure and property term type
- 08:27 AM feature request #8011 (Resolved): Implement term search view
03/27/2019
- 05:59 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
- Eckhard noch fragen, was mit den Namen geschehen soll, bei denen LinkedName und FreeTextName nicht übereinstimmen.
D... - 05:58 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
- ERS decided to use synonymie names whereever possible. Equalness of existence of authors is not so important.
With t... - 05:57 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- Solution 1 should also preclude name duplicates.
- 05:36 PM bug #8050 (In Progress): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- We agreed on solution 1. from above: "*Require the user to add a reference to the name before the popup editor in whi...
- 01:12 PM bug #8050 (Feedback): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- There will be situations in which the existing name will not yet have a nomenclatural reference. Creating a Registrat...
- 05:36 PM feature request #7894 (Resolved): [CHECK] Import sourceNumber as Identifier for references
- 04:32 PM bug #7963: TaxonNamePopEditor: name part field visibility not correct for all ranks
- done!
For the rank "unknown rank" only the uninomial field is shown
For the remaining tasks formulated in the d... - 04:16 PM bug #7963 (Resolved): TaxonNamePopEditor: name part field visibility not correct for all ranks
- Applied in changeset commit:cdm-vaadin|a0643e2c0aa12a7c83f208bf2709dc06a163befb.
- 04:27 PM Revision 712e49c6 (cdm-vaadin): ignoring workbench.xmi
- 04:24 PM Revision dcf5e676 (cdm-vaadin): fix #7963 trating UNKNOWN Rank class as super-specific
- 04:18 PM Revision b2261934 (cdm-vaadin): ignoring workbench.xmi
- 04:16 PM Revision a0643e2c (cdm-vaadin): fix #7963 trating UNKNOWN Rank class as super-specific
- 03:54 PM bug #8197 (Closed): Deleting Media from Image Gallery View does not make view dirty
- works fine
- 02:45 PM bug #8197 (Resolved): Deleting Media from Image Gallery View does not make view dirty
- this should be fixed now. The operation is executed while saving now.
- 03:47 PM task #7935 (Feedback): Discuss new solution to establish the communication between submitter and curator
- Hi Henning,
is there anything left to discuss regarding this issue?
Andreas
- 03:46 PM Revision 032b62c4 (taxeditor): ref #7428: update all name editors involved when executing subtree operations
- 03:45 PM Revision 9e1446d2 (taxeditor): ref #7428: update all name editors involved when executing subtree operations
- 03:44 PM feature request #7968 (Closed): ReferenceEditor: optional validation for completenes of Partial values in datePublished
- fully implemented but untestable since the system apparently does not allow to use incomplete Partials in the vaadin UI.
- 03:42 PM feature request #7968 (Resolved): ReferenceEditor: optional validation for completenes of Partial values in datePublished
- Applied in changeset commit:cdm-vaadin|f8fda7a9f00c1e87430c03d06bbcfcff44aa7ff4.
- 02:56 PM feature request #7968 (In Progress): ReferenceEditor: optional validation for completenes of Partial values in datePublished
- 03:43 PM Revision 10d072e7 (cdm-vaadin): fix #7968 validators for completeness of Partial and TimePeriod
- 03:42 PM Revision f8fda7a9 (cdm-vaadin): fix #7968 validators for completeness of Partial and TimePeriod
- 03:40 PM Revision 981b5cfb (taxeditor): minor
- 03:00 PM bug #7833 (Rejected): submitters can access see any registration in any RegistrationWorkingSet
- 02:40 PM Revision 5e966d50 (taxeditor): ref #8197: fix delete of media in media view
- 02:27 PM bug #8206 (New): Editing references with missing update rights should not be possible
- Actually it is possible to edit references without the UPDATE right for references. While saving the user gets an exc...
- 02:17 PM Revision a6edfc5a (cdm-vaadin): ref #8050 fixing bug in reloadRegistrtions() and removing remain from previous conflict
- 01:47 PM Revision ee57c0d9 (cdm-vaadin): ref #8050 fixing bug in reloadRegistrtions() and removing remain from previous conflict
- 11:43 AM Revision f1e0b490 (cdmlib): comments and doc for IRegistrationService
- 11:39 AM Revision 7ebcfd4b (cdm-vaadin): ref #8184 reverting typedesignation status filter back to ListSelect
- 11:36 AM Revision 8af7fcc2 (cdm-vaadin): ref #8050 creating blocking registrations for exising names which are used in the context of another registration
- 11:35 AM Revision eee96dac (cdm-vaadin): ref #8050 moving transactional code from RegistrationWorkingsetPresenter to new service class
- 11:30 AM Revision 4e29c10f (cdm-vaadin): ref #8050 creating blocking registrations for exising names which are used in the context of another registration
- 09:24 AM bug #5279: Deleting taxon node is slow in some cases
- this is the same problem as in #5278, when deleting a node with a lot of siblings the creation of the new sortindex t...
03/26/2019
- 05:14 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- Wenn man versehentlich einen falschen namen z.B. als Basionym auswählt, würde dann für diesen Namen eine Blocking-Reg...
- 05:05 PM Revision 68afc0ec (cdm-vaadin): ref #8050 moving transactional code from RegistrationWorkingsetPresenter to new service class
- 03:57 PM bug #8149 (Closed): ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL
- Henning, says this is tested and works as expected.
- 03:55 PM bug #8194 (Closed): LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name
- 03:54 PM bug #8194: LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name
- We agreed on :
> 1. hide the delete button in this situation and implement #8204
Warning is sufficient, we don'... - 03:53 PM feature request #8204: RegistrationWorkingsetEditor shows list of unused sections and allows for delting them
- nice to have
- 03:48 PM bug #4545 (Closed): Implement TeamOrPersonBaseSelectionDialog
- The selection dialog works like the other selection dialogs. Institution, as the only sub class of AgentBase that sho...
- 03:44 PM bug #8191 (Closed): ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked
- 03:38 PM bug #8197 (Feedback): Deleting Media from Image Gallery View does not make view dirty
- Now the name editor is set to dirty but if it is closed without saving the media is removed anyways. So either the me...
- 08:47 AM bug #8197: Deleting Media from Image Gallery View does not make view dirty
- this should be fixed, please review.
- 03:30 PM bug #8192 (Closed): The curator must be able to unlock a published registration for edition
- 09:19 AM bug #8115: NPE when moving factual data
- this is because the description only contains a not persisted description element and this is not available when the ...
03/25/2019
- 06:58 PM bug #8192: The curator must be able to unlock a published registration for edition
- Checked in Test-System with two names of Nupela, registered 2018-11-02.
TypeSpecimen: unlock and add a type: works... - 02:50 PM bug #8192 (Resolved): The curator must be able to unlock a published registration for edition
- done, please review
- 05:46 PM bug #8191: ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked
- I was able to include new journal names in Basionym references. I included sections in the name editor and was able t...
- 02:51 PM bug #8191 (Resolved): ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked
- please review
- 05:28 PM bug #8050 (In Progress): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
- 04:45 PM bug #7962: PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more humane labels
- Please review
- 04:42 PM bug #7962 (Resolved): PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more humane labels
- Applied in changeset commit:cdm-vaadin|8745f04714df865f1780025b43b24b9eaa5a198a.
- 04:43 PM Revision 89659534 (cdm-vaadin): fix #7962 "New" or "Edit" information and humane lables for DTO editors in context breadcrumbs
- 04:42 PM Revision 8745f047 (cdm-vaadin): fix #7962 "New" or "Edit" information and humane lables for DTO editors in context breadcrumbs
- 02:56 PM Revision 34d43087 (cdm-vaadin): ref #8191 intoducing the long awaited EditorFormConfigurator for fine tuning of the inReference button enabled states
- 02:56 PM Revision cd93f49b (cdm-vaadin): ref #8192 unlock button to allow curator and admin to edit published Registrations
- 02:48 PM Revision f151a6f9 (cdmlib): ref #8188 adding empty hibernate.properties for main to satisfy PropertiesFactoryBean in production mode
- 02:17 PM feature request #8033 (Duplicate): Add/Enable absent/present state for every character
- duplicates #8178
- 02:13 PM Revision 61c21b1e (cdm-vaadin): ref #8188 adding empty hibernate.properties for main to satisfy PropertiesFactoryBean in production mode
- 01:15 PM Revision a4b97169 (cdm-server): ref #8189 cdm-server stores parameters as initParameter instead as Attribute, this allows to access these via Spring Environment
- 01:13 PM Revision 6dd0caa2 (cdmlib): ref #8189 better reporting of error conditions in AbstractWebApplicationConfigurer
- 10:12 AM feature request #8153: Adapt cdmlib to FeatureNode/FeatureTree model changes
- By introducing the generics this is probably done. There is still some code which does not use/specify generics but t...
03/23/2019
- 09:37 AM Revision ae855a23 (cdmlib-apps): Import E+M details notes as name notes
- 12:11 AM Revision febf715a (cdmlib-apps): adapt app-import to new AccountStore package
03/22/2019
- 11:53 PM Revision 2f2c4477 (cdmlib): minor
- 11:53 PM Revision 3bde5f80 (cdmlib): fix bug in term type check
- 11:28 PM Revision 78159090 (cdm-vaadin): ref #8191 intoducing the long awaited EditorFormConfigurator for fine tuning of the inReference button enabled states
- 11:06 PM Revision 6850fcf9 (cdmlib): fix term type check in FeatureNode
- 10:29 PM Revision fad2732b (cdmlib): Revert "Remove useless check"
- This reverts commit 1a4fdfe5c12c655451e25c567f656a8df0f1b9a5.
- 09:32 PM Revision 16580b3c (cdm-vaadin): ref #8192 unlock button to allow curator and admin to edit published Registrations
- 09:31 PM Revision 97c6b732 (cdm-vaadin): ref #8184 reverting typedesignation status filter back to ListSelect
- 07:58 PM bug #8075 (Resolved): multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations
- 07:49 PM bug #8075: multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations
- potentially fixed through the changes made for #8160, #7106
- 07:57 PM bug #8158 (Resolved): cascade="all-delete-orphan" problem when ....
- potentially fixed through the changes made for #8160, #7106
- 07:56 PM bug #7881 (Resolved): reference selection combobox broken after error in ...
- potentially fixed through the changes made for #8160, #7106
- 07:51 PM bug #8065 (Feedback): HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table
- potentially fixed through the changes made for #8160, #7106
- 07:36 PM Revision fd6328a5 (cdmlib): minor changes in TermLoader
- 07:21 PM Revision 16ee34cb (cdm-vaadin): fix #8184 using NativeSelect instead of ListSelect to avoid circumvent a bug in the ListSelect which affects the Chrome browser
- 07:21 PM Revision 68d2ffb7 (cdm-vaadin): fix #8149 inclusion of NULL and Genric ref types optional and fixing bugy refresh
- 07:20 PM bug #8149: ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL
- please review
- 07:18 PM bug #8149 (Resolved): ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL
- Applied in changeset commit:cdm-vaadin|27820075a6585b46648a6f1dcd4241a6b45596d8.
- 07:19 PM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
- please review with Heba if this still occurs
- 07:18 PM bug #8184 (Resolved): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
- Applied in changeset commit:cdm-vaadin|86f09e7b2e34f272b2f4769f5f7fb3729fea7ef7.
- 07:18 PM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
- this seems to be a bug in the ListSelect which affects the Chrome browser
- 07:16 PM Revision 86f09e7b (cdm-vaadin): fix #8184 using NativeSelect instead of ListSelect to avoid circumvent a bug in the ListSelect which affects the Chrome browser
- 06:42 PM Revision 27820075 (cdm-vaadin): fix #8149 inclusion of NULL and Genric ref types optional and fixing bugy refresh
- 06:28 PM feature request #8180 (In Progress): Add property term "Presence/Absence" to CDM default terms
- 06:28 PM feature request #8153 (Feedback): Adapt cdmlib to FeatureNode/FeatureTree model changes
- is this still an open issue? If yes, can you give more inside?
- 06:13 PM bug #8183 (In Progress): Make Feature IndividualAssociation a generalization of Specimen and Observation
- 06:07 PM Revision 1064bb88 (cdmlib-apps): ref #7669 latest changes to Greece Willing images import, incl. no barcode import
- 04:35 PM bug #8205 (New): SpecimenTypeDesignationsEditor: First selection of mediaReference gets lost
- Permanent bug:
Image Reference is selected for the first time -> selected but not gets lost when clicking in another... - 03:51 PM bug #8194 (Feedback): LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name
- Even if the LazyInitializationException is avoided deletion of the section is impossible since it is still in use as ...
- 03:38 PM Revision 9817d054 (cdm-vaadin): updating poms for 5.5.4 branch with snapshot versions
- 03:32 PM Revision d8ec06ee (cdm-vaadin): removing useless session flush in CdmStore.delete function
- 03:32 PM bug #8115: NPE when moving factual data
- I just tested it with cdmlib and taxeditor completely up-to-date. I tested on a copy of flora of greece this time to ...
- 02:06 PM bug #8115: NPE when moving factual data
- Did you test with the actual cdmlib version?
cdmlib was not build until this morning. - 01:46 PM bug #8115 (Feedback): NPE when moving factual data
- Now saving in step 4 works but the description with the description from which the element was moved away from disapp...
- 03:31 PM feature request #8204 (New): RegistrationWorkingsetEditor shows list of unused sections and allows for delting them
- the RegistrationUI does not allow deleting unused sections. The RegistrationWorkingsetEditor could show the list of u...
- 03:24 PM bug #8203 (New): Adapt specimen page title to record basis
- The current specimen page hast "Specimen" written in the title despite the actual record basis
Example: http://por... - 03:15 PM Revision eacea571 (cdmlib): ref #8189 DataSourceConfigurer @Autowiring ConfigFileUtil to init this bean before
- 02:50 PM bug #8202 (New): Multiple representations exception when reusing image in image gallery
- In Flora of Greece I tried to move an image from taxon Anchusa aegyptiaca to Anchusella variegata.
I did this by fir... - 02:39 PM task #8201 (In Progress): test all delete functionality in the RegistrationUI
- 02:35 PM bug #8200 (Closed): Changing title(cache) for factual data set not possible
- When trying to change the title of a factual data set in details view the old title is recreated during save.
Corr... - 02:32 PM bug #8197 (Resolved): Deleting Media from Image Gallery View does not make view dirty
- Applied in changeset commit:taxeditor|02bb31eada6b7edfb3c3d155bb13ad967428aa56.
- 02:22 PM bug #8197 (Closed): Deleting Media from Image Gallery View does not make view dirty
- ... therefore one may think that the media is deleted but it is not after reload. This is dangerous therefore high pr...
- 02:32 PM Revision 02bb31ea (taxeditor): fix #8197: fix make name editor dirty if media is deleted
- 02:26 PM feature request #8199 (New): ReferencePage: show the relation of orthographic corrections to the corrected name
- in case of an orthographic correction both names which are related this way belong to the same publication.
In the... - 02:24 PM bug #8198 (Closed): Deleting an image gallery from image gallery view shows wrong configuration dialog
- It shows the same dialog like when deleting media, but the image gallery is something else. Image galleries should no...
- 02:16 PM feature request #8196 (Closed): display ortographic corrections in name relations as 'corrected name: <nameCache>'
- ortographic corrections are to be displayed as last entries in the name relations:
* corrected name: <nameCache> [... - 01:54 PM Revision 3480974e (cdm-vaadin): ref #7356 ignoring selenide tests for now since they conflict with other tests
- 01:53 PM Revision a630e869 (cdm-vaadin): ref #7356 documentation on setting up the project for selenide tests
- 01:33 PM feature request #8195 (New): TaxonNamePopupEditor: offer Reference and RuleConsidered fields for replaced synonyms
- in contrast to earlier considerations for *Replaced Synonyms* it is also important to enter data into the Reference a...
- 12:58 PM Revision 460fe6fd (cdmlib): ref #8189 DataSourceConfigurer using ConfigFileUtil correctly
- 11:35 AM Revision ab611430 (taxeditor): ref #8189 organizing imports for ConfigFileUtil
- 11:26 AM Revision 55c390a0 (taxeditor): ref #8189 adapting taxeditor to changes in CdmUtils and ConfigFileUtil
- 09:08 AM bug #8190 (Resolved): Default FeatureTree throws exception
- I extended the type check to also allow subtypes in the term tree
- 08:53 AM Revision b7d3a480 (cdmlib): ref #8190 Fix potential NPE
03/21/2019
- 07:03 PM bug #8192: The curator must be able to unlock a published registration for edition
- use the lock and unlock icons from fontawesome:
https://fontawesome.com/icons/lock-open?style=solid
https://fon... - 06:32 PM bug #8192 (Closed): The curator must be able to unlock a published registration for edition
- The curator sometimes needs to modify the data for a registration after it has been published.
Currently it is req... - 07:01 PM bug #8194: LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name
- Initializing the authorteam of the inReferences of the references loaded by the combobox should solve the problem.
- 06:59 PM bug #8194 (Closed): LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name
Habe die Section des eines Namens die als nomenklatorische Referenz gesetzt war löschen wollen:
http://phycoba...- 06:53 PM Revision cf9ba327 (cdmlib): ref #8189 cdmlib-remote.properties as not required property source fixes bug introduced in 9b55e525
- 06:46 PM feature request #8193 (Closed): TaxonNamePopupEditor: add select form element for Nomenclatural status
- Enable to add a nomenclatural status from a subset of status (see TaxEditor).
Exception invalid name in valitation =... - 06:26 PM bug #8191 (Closed): ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked
- By now when opening the ReferenceEditor for inReference of a TaxonName the user can not modify or set a new inreferen...
- 06:04 PM Revision 7f0f28bb (cdmlib): upgrading jetty-maven-plugin to 9.4.15.v20190215
- 04:44 PM Revision 72cbb7ab (cdm-vaadin): ref #7356 foundation for selenide tests implemented
- 04:32 PM Revision 3870ac74 (cdm-vaadin): ref #7356 adding selenide and spring-boot dependencies
- 04:30 PM Revision 17f913df (cdmlib): ref #8189 removing unnecessary dependency from cdmlib-commons
- 04:26 PM Revision 2d4efdc3 (cdm-vaadin): ref #7356 moving VaadinServletConfiguration from web.xml into CdmVaadinConfiguration
- 04:25 PM bug #8189 (Resolved): Allow configuration of 'user.home' via the spring environment
- close issue if the changes are not causing any problems.
- 12:15 PM bug #8189 (Closed): Allow configuration of 'user.home' via the spring environment
- By now it is only possible to configure the `${user.home}` via the system properties. That means the only option to s...
- 03:47 PM Revision 8b5bca23 (taxeditor): ref #8115 Use cached feature tree in factual data view context menu
- 03:47 PM Revision 1a4fdfe5 (cdmlib): Remove useless check
- 03:47 PM Revision 1ebbb842 (cdmlib): ref #8190 Allow sub term types for FeatureNode relations and trees
- 03:03 PM bug #8190 (In Progress): Default FeatureTree throws exception
- 01:30 PM bug #8190 (Closed): Default FeatureTree throws exception
- When there are Characters and Features in the data base and the default feature tree is created it will fetch all of ...
- 03:02 PM Revision 1b16a0e4 (taxeditor): ref #8058: add common name language preference - continue
- 02:56 PM feature request #8058: Further issues for (local) preferences
- the common name language preference is added.
- 02:46 PM Revision 0df7271b (cdmlib): ref #8189 ConfigFileUtil as spring bean in deafult context and tests implemented
- 02:46 PM Revision 110c97a6 (cdmlib): ref #8189 moving method getFolderSeperator() back to CdmUtils
- 02:46 PM Revision a23c2a31 (cdmlib): ref #8189 moving ConfigFileUtil and AccountStore to cdmlib-persistence:eu.etaxonomy.cdm.config
- 02:46 PM Revision 44b37b30 (cdmlib): ref #8189 moving folder funstins from CdmUtils to ConfigFileUtil
- 02:46 PM Revision 9b55e525 (cdmlib): ref #8189 CdmUtils uses the spring environment to find user.home
- 02:46 PM Revision cb88358a (cdmlib): ref #7356 upgrading goggle guava to 23.0 to conform to seleninde dependency which is used in cdm-vaadin
- 02:46 PM Revision 4c54f20c (cdmlib): removing test method
- 02:46 PM Revision d12f4695 (cdmlib): ref #8188 configurable.xml loads hibernate properties from src/test/resources/hibernate.properties - cdmlib
- 02:46 PM Revision 28eb7ddd (cdmlib): ref #7356 avoiding spring bean dependency cycle by adding @Lazy
- 02:46 PM Revision 74547d6a (cdmlib): ref #7356 throwing RuntimeException in case of severe web application misconfiguration instead of just logging
- 02:43 PM Revision 2de8ed33 (taxeditor): ref #8058: add common name language preference
- 02:42 PM Revision d942cf2e (cdmlib): ref #8058: add commonNameLanguage to PreferencePredicate
- 01:13 PM Revision 35ff7f48 (cdmlib-apps): db-name change in IAPTActivator
- 11:43 AM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
- Specimen Editor: auch der erste Typus lässt sich nicht speichern (kritisch)
- 11:34 AM Revision 1b2d19db (cdmlib): ref #6627: add import of taxon interactions to cdmlight - continue
- 10:35 AM Revision 1e610f38 (cdmlib): ref #6627: add import of taxon interactions to cdmlight
03/20/2019
- 04:58 PM Revision 3c64d726 (taxeditor): Refresh feature and character details view when setting feature supports
- 04:45 PM Revision daeb8ba2 (taxeditor): ref #8146 Adapt "add term wizard" to termType restriction
- 04:41 PM feature request #7975: Implement a block to display name relations
- Validation:
Replacement name:
Wie Validation behandeln,
Zudem wird
1. beim Widg... - 03:10 PM Revision cab6ecd7 (cdm-vaadin): ref #8188 configurable.xml loads hibernate properties from src/test/resources/hibernate.properties - cdm-vaadin
- 02:54 PM bug #8188 (In Progress): Allow configuring hibernate properties via properties file
- 02:54 PM bug #8188 (Closed): Allow configuring hibernate properties via properties file
- To allow for more flexible configuration of test environments it would be great if the hibernate properties which are...
- 11:14 AM Revision a1095eff (cdmlib): fix regression in fieldUnitDTO with wrong collector+collectionNr
- 11:10 AM feature request #8187 (New): Use Spring Environment instead of custom code in AbstractWebApplicationConfigurer
- the method `AbstractWebApplicationConfigurer.findProperty(String property, boolean required)` implements a similar st...
- 09:56 AM Revision 86f28971 (taxeditor): fix #7428: use eventbus for propagating update information
- 08:06 AM Revision 903b5970 (taxeditor): Adapt to model change (set termType in constructor)
- 08:01 AM Revision 9b4264ec (cdmlib): Set term type in constructor for term and voc DTO
03/19/2019
- 07:31 PM feature request #7975: Implement a block to display name relations
- Examples correctly in PhycoBank as use case for output improvement:
Example Validation
https://www.phycobank.org... - 02:30 PM feature request #7428: Open issues for updating open data while subtree is updated
- please review.
Bulkeditor and nameeditor are updated. - 02:11 PM Revision 630c2c5d (taxeditor): ref #7428: fix selection for updated titlecache
- 01:47 PM Revision a3d5eccd (cdmlib-apps): update to GreeceImageActivator
- 01:47 PM Revision d29ad503 (cdmlib-apps): update mysql driver in commented unitils datasource
- 01:47 PM Revision 5ec402ba (cdmlib-apps): adapt GermanSLImporBase inheritance
- 01:36 PM bug #8115 (Resolved): NPE when moving factual data
- this problem is fixed.
- 01:29 PM bug #4545 (Resolved): Implement TeamOrPersonBaseSelectionDialog
- please review.
TeamOrPerson is used for example for TaxonNodeAgentRelations or for authors in references - 01:29 PM Revision b7a38212 (taxeditor): ref #4545: reference author is of type teamOrPerson
- 01:27 PM Revision 23d182dd (taxeditor): ref #8115: fix move facts when not persisted facts exist
- 01:15 PM Revision 4a8227d3 (cdmlib): ref #4545: add getUuidAndAbbrevTitleCache with class parameter
- 12:57 PM Revision dfc1e4fa (cdmlib): ref #4545: add getUuidAndAbbrevTitleCache with class parameter
- 12:49 PM feature request #8185 (Feedback): Type layout
- Hi Andreas, the same kind of formatting has formerly also been requested by Walter.
I consider this a very good so... - 12:29 PM Revision 7bea8087 (taxeditor): ref #4545: add TeamOrPersonSelectionDialog
- 09:52 AM feature request #8186 (Duplicate): List view order
- ordering by registration numbers is hardly possible, see #7978.
Furthermore is this ticket a duplicate of #8157
03/18/2019
- 06:02 PM feature request #8186 (Duplicate): List view order
- List view in Vaadin should be arranged from new (high registration numbers) to old.
- 05:51 PM feature request #8185 (Feedback): Type layout
- Type (as is):
Holotype: (BM BM123)
should be:
Holotype: BM (BM123)
see for example: https://www.phycobank... - 05:45 PM bug #8184 (Closed): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
- In Vaadin, type specimen editor a new line is created when a typ is selected.
This functions in FireFox. This does n... - 05:16 PM bug #8183 (In Progress): Make Feature IndividualAssociation a generalization of Specimen and Observation
- until now this has been handled in the static method Feature.INDIVIDUALS_ASSOCIATION() which is not the correct place...
- 03:55 PM bug #8115 (Feedback): NPE when moving factual data
- This setup now works because we have to save before dragging the abstract to the other description
There is howeve... - 02:30 PM Revision 0ac58cd8 (cdmlib): minor
- 02:30 PM Revision 268e5f20 (cdmlib): cleanup
- 02:07 PM task #7515: TypeDesignationStatusComparator to sort by vocabulary first and then by term order
- Andreas Kohlbecker wrote:
> The Taxeditor should be more resilient against unusual data.
>
> 1. Suggestion as d... - 01:33 PM feature request #7433: new service method to get specimen by genetic AccessionNumber
- this service method is implemented, but controller method is still missing
- 01:30 PM feature request #8182 (In Progress): show blast search result
- the json result of the blast search should be displayed and the accession number needs to be a link to the correspond...
- 01:20 PM bug #8148 (Resolved): Login Dialog cuts off information
- I put it to resolved to remind me reviewing.
Or are there still open issues? - 01:04 PM bug #8148: Login Dialog cuts off information
- I adapted the exception section and I could not reproduce the cutted advanced section (with the actual nightly). Coul...
- 12:57 PM Revision 8b0c5128 (taxeditor): delete hibernate.cfg.xml
- 12:13 PM Revision 53bd0d7f (taxeditor): ref #8178 Adapt to service layer change
- 12:10 PM Revision 472739e6 (taxeditor): ref #8178 Auto-create presence-absence character
- 12:02 PM Revision 65b3a18d (taxeditor): ref #8178 Adapt to service layer change
- 12:02 PM Revision 7b1abbc3 (taxeditor): Fix term type check for feature drop adapter
- 11:55 AM feature request #5890 (New): Implement auto-suggest for data portal
- 11:07 AM Revision fe4a6e83 (taxeditor): ref #3836: add the modifier vocabulary to the combobox
- 09:39 AM Revision 0a9b7662 (cdmlib): ref #8178 Add vocabulary parameter to create child node service method
03/15/2019
- 03:30 PM Revision a296b200 (cdmlib): ref #8169 adding missing @Transactional to VersionableServiceBase.isDeletable()
- 03:29 PM bug #8169: avoid factory.openSession() in DaoBase
- VersionableServiceBase.isDeletable misses the @Transactional(readOnly = true) annotation!
- 03:25 PM bug #8169: avoid factory.openSession() in DaoBase
- Here is a case found in the server log (occurred 6x in a couple of hours):
~~~
[phycobank] 2019-03-15 10:27:44,... - 01:57 PM Revision 4186a152 (cdm-dataportal): ref #7755: filter import sources for occurrences
- 01:13 PM Revision a1ce57ce (cdm-dataportal): ref #7755: rename baseURL for occurrences to occurrence/uuid
- 12:02 PM Revision abe0b021 (cdm-dataportal): ref #7755: some order issues in specimen detail page
- 11:44 AM feature request #8181 (New): Further features for bulk editors
- this is a ticket to collect all wanted features for bulkeditors:
Advanced search or column filter options:
* ... - 10:44 AM feature request #7755: Implement advanced detail page for occurrences
- mail from AM:
Hallo Katja,
ich bin im Zuge von FoG über die Specimenseite gestolpert. Sehr schön, dass da jetzt... - 09:21 AM feature request #8180 (Closed): Add property term "Presence/Absence" to CDM default terms
- When describing a specimen via Characters (almost) all structures may or may not exist. To be able to describe if a s...
- 08:35 AM Revision ce7faf74 (cdmlib): ref #8162 update to model cache
- 08:18 AM Revision 31e57990 (cdmlib-apps): Adapt imports to tem model changes
03/14/2019
- 06:26 PM bug #8179 (New): PopupEditorException
- Type name editor, PopupEditorException
when saving a name type of a genus
in Workingset
http://api.phycobank.org... - 04:05 PM Revision 63311bd9 (cdm-vaadin): multiple test datasources for tesing multiple test suites
- 02:48 PM Revision 7dc9bbbb (taxeditor): ref #3836: add modifier to description elements
- 02:12 PM feature request #8178 (Rejected): Auto-create absence/presence character for every structure
- Presence/Absence Property (PA)
* Jede Strukture muss in Kombination mit PA-Property einen Character bilden.
* Bei... - 02:04 PM feature request #8121 (In Progress): Allow selecting structural/property modifiers when creating a character
- 01:56 PM feature request #6849 (In Progress): [DISCUSS] How to handle "kind of" term creation in TermEditor
- 01:37 PM Revision d9f54449 (taxeditor): ref #7428: updateEditors method in AbstractUtility class
- 01:07 PM Revision 46567e3a (cdmlib): ref #6413 Throw exception for more than 1 or 0 FieldUnits
- 01:05 PM Revision 28716614 (cdmlib): Adapt test to change in clone() method
- 12:16 PM Revision f9fbd38a (taxeditor): ref #6413 i18n
- 12:11 PM feature request #6413 (Resolved): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
- The first implementation allows selection one of the already existing specimen type designation for creating the dupl...
- 12:07 PM Revision d436d97b (taxeditor): code cleanup
- 12:00 PM Revision 18a3973f (taxeditor): ref #6413 Disable non-editable text fields
- 12:00 PM Revision 80a540f2 (taxeditor): ref #6413 Implement type duplication in type detail section
- 12:00 PM Revision 0661b3e6 (taxeditor): ref #6413 Add "Clone Type Duplicate" option to name details view
- 12:00 PM Revision 899a348b (taxeditor): Fix copy&paste error
- 12:00 PM Revision 99366401 (cdmlib): ref #6413 Add service method for duplicating type specimen
- 12:00 PM Revision 56b642e9 (cdmlib): Fix clone() method of SpecimenOrObservationBase
03/13/2019
- 04:00 PM Revision 123796a3 (taxeditor): ref #7428: move updateViews into AbstractUtility
- 12:52 PM feature request #8175: add name facts to cdm light export
- the name facts are moved to their own table.
- 12:51 PM Revision 24b61cf8 (cdmlib): ref #8175: name facts in a separate table
- 12:30 PM Revision a3c9dcce (cdm-server): cdmlib-developer.log to be ignored by git
- 12:29 PM Revision 14a235fc (cdm-server): ref #8173 setting spring.profiles.active in the cdm-sever bootloader if not defined otherwise
- 12:17 PM Revision 42b67a16 (cdmlib): Revert "ref #8173 removing 'remoting' profile activation from ide launchers"
- This reverts commit 027eaf7c3181f62d725e7b5a677284f07cd5b43b.
- 12:16 PM Revision dd0d18ea (cdmlib): Revert "ref #8173 activation of profile remoting in the web.xml"
- This reverts commit f2d3f4d37174244ca577203d1228256c6f787a29.
- 10:46 AM Revision 2c44794f (taxeditor): minor
- 09:57 AM feature request #7428 (Resolved): Open issues for updating open data while subtree is updated
- Applied in changeset commit:taxeditor|4fff2d21dfed4ae1ba6c5106e7d59cdf2e82548c.
- 09:56 AM Revision 4fff2d21 (taxeditor): fix #7428: ask for saving and update open views for subtree operations
- 09:36 AM bug #8176 (Resolved): WeaklyRelatedEntityCombobox is slow
- test TaxonNamePopupEditor Genus field, replaced Synonym and Basionym also some ToManyRelatedEntitiesComboboxes and T...
- 09:31 AM Revision aec76ebb (cdm-vaadin): ref #8176 removing workaround with bad performance which was need for broken TaxonNameStringFilterablePagingProvider.idFor()
- 09:02 AM Revision eb8d2f54 (cdm-vaadin): ref #8176 bugfix in TaxonNameStringFilterablePagingProvider.idFor()
03/12/2019
- 05:57 PM bug #8176 (In Progress): WeaklyRelatedEntityCombobox is slow
- 02:15 PM bug #8176 (Closed): WeaklyRelatedEntityCombobox is slow
- ## on setting values
The WeaklyRelatedEntityCombobox needs to check if the value to set is at all contained in the... - 05:57 PM Revision af0633ea (cdm-vaadin): ref #8176 WeaklyRelatedEntityCombobox solving minor performance on setValue
- 03:48 PM Revision f2d3f4d3 (cdmlib): ref #8173 activation of profile remoting in the web.xml
- 02:22 PM report #8177 (Worksforme): Discuss: How to add originals of a type specimen
- How to store?
- 01:07 PM bug #6627: Remaining cdm light issues
- the name facts are implemented now, see #8175
- 01:06 PM feature request #8175: add name facts to cdm light export
- please review
- 01:06 PM feature request #8175 (Resolved): add name facts to cdm light export
- Applied in changeset commit:cdmlib|852a1a9e5171370a8e3e6962b21837e38115cf9a.
- 01:04 PM feature request #8175 (Closed): add name facts to cdm light export
- We decided to keep the name facts in cdm, so the name facts should be exported as well
- 01:06 PM Revision 852a1a9e (cdmlib): fix #8175: name facts should be exported by cdm light export
- 12:53 PM bug #8099: Error saving name type designation editor due to problem in poupeditor context
- can not reproduce
- 12:52 PM Revision 98db0610 (cdm-vaadin): ref #8132 fixin bug related to transaction rollback in CdmStore
- 12:03 PM bug #8111: User selection dialog for groups does not filter out existing users
- please review
- 12:02 PM bug #8111 (Resolved): User selection dialog for groups does not filter out existing users
- Applied in changeset commit:taxeditor|cbc83794de4303c54b45309ff151c70627e82e1a.
- 12:02 PM Revision cbc83794 (taxeditor): fix #8111: filter existing users/groups for member/group selection
- 11:34 AM bug #8115: NPE when moving factual data
- please review
- 11:33 AM bug #8115: NPE when moving factual data
- the problem was the not persisted description, therefore the description needs to be passed to the service method. To...
- 11:26 AM bug #8115 (Resolved): NPE when moving factual data
- Applied in changeset commit:taxeditor|803af83ee2911d193d6a95a3f73dee727ae77d45.
- 11:23 AM Revision b5a42086 (cdmlib): ref #8115: fix move elements for not persisted target description
- 11:23 AM Revision 803af83e (taxeditor): fix #8115: fix move elements to not persisted target description
- 10:14 AM Revision 408fe3ed (cdm-vaadin): avoiding LazyInitialitationException
- 09:31 AM feature request #8136: Implement sources for type designations in TaxEditor
- please review
- 09:30 AM feature request #8136 (Resolved): Implement sources for type designations in TaxEditor
- Applied in changeset commit:taxeditor|9f40979f5e0d2fc55100acc5a7fabac00d48ce12.
- 09:30 AM Revision 9f40979f (taxeditor): fix #8136: update type section when changing type to or from lectotype
- 09:09 AM Revision 8f2aad1d (cdm-server): ref #8173 removing 'remoting' profile activation from ide launchers
- 09:09 AM Revision 027eaf7c (cdmlib): ref #8173 removing 'remoting' profile activation from ide launchers
- 08:53 AM Revision df841466 (cdm-server): notes on commented settings regarding debugging of leaky db connections
- 08:36 AM bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- I did a brief research on the topic of hotfix branches:
1. git flow has the concept of ***support branches*** by whi... - 08:11 AM task #8130: Check if related feature data is cleared when supported facts type is changed
- For nomenclatural code there is a method checkForDeletableParts() where the deletable parts set to null.
But for ...
03/11/2019
- 06:10 PM Revision 5261131c (cdm-vaadin): ref #8132 proper transaction rollback in CdmStore - copied from hfx branch
- 05:18 PM Revision 41cb64c2 (cdm-server): Merge branch 'hotfix/5.5.3'
- 05:18 PM Revision 3a3734fc (cdm-server): jenkins: setting project version to 5.5.3
- 05:14 PM Revision 4b98496f (cdm-webapp): Merge branch 'hotfix/5.5.3'
- 05:14 PM Revision ecfdfc7e (cdm-webapp): jenkins: setting project version to 5.5.3
- 05:07 PM Revision 43faffd3 (cdm-vaadin): Merge branch 'hotfix/5.5.3'
- 05:07 PM Revision 4ee41e42 (cdm-vaadin): jenkins: setting project version to 5.5.3
- 05:05 PM Revision 761ee155 (cdm-server): jenkins bumping cdm-webapp.version to 5.5.3
- 05:04 PM Revision 5d752aea (cdm-server): updating poms for 5.5.3 branch with snapshot versions
- 02:47 PM Revision 23459bd5 (cdmlib): Merge branch 'hotfix/5.5.2'
- 02:47 PM Revision e4b983ac (cdmlib): jenkins: setting project version to 5.5.2
- 02:33 PM bug #8174: First test fails if term data is in loaded DataSet
- This is the order how events are handled in unitils:
* [Unitils] beforeTestClass - TestClass1
* [Test] testBefore... - 02:30 PM bug #8174 (New): First test fails if term data is in loaded DataSet
- This is because the unitils/dbunit JpaModul starts the application context only during
~~~ java
beforeTestMethod... - 02:32 PM Revision c766108e (cdm-webapp): jenkins bumping cdmlib.version to 5.5.2 cdm.vaadin.version to 5.5.3
- 02:32 PM Revision 98dbaebe (cdm-webapp): updating poms for 5.5.3 branch with snapshot versions
- 02:23 PM Revision d201d8e5 (cdm-vaadin): Merge branch 'hotfix/5.5.3' into develop
- 02:18 PM Revision e98e8737 (cdm-vaadin): Revert "ref #8132 proper transaction rollback in CdmStore" which has been only been cherry-picked to avoid merge problems during the release later on
- This reverts commit 278e8f9600956b6e8205337045815a153f0a05ac.
- 02:16 PM Revision 278e8f96 (cdm-vaadin): ref #8132 proper transaction rollback in CdmStore
- merging Conflicts in src/main/java/eu/etaxonomy/cdm/service/CdmStore.java
- 02:01 PM Revision 23025c30 (cdm-vaadin): ref #8132 proper transaction rollback in RegistrationWorkingsetPresenter
- 02:01 PM Revision 9f8b217c (cdm-vaadin): adding c3p0.properties to gitignore
- 01:53 PM bug #8170: javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not conform to the interface
- I opened issue #8171 only for fixing the most severe problem quickly by storing the new connection in the cache field...
- 01:41 PM bug #8170 (Feedback): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not conform to the interface
- Is this still an open issue after #8171 is solved now?
I also do not fully understand the solution. In #8171 you s... - 01:41 PM bug #8149: ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL
- Related problem:
if e.g. "Phytotaxa" is tiped into the dopdown menue field, "Phytotaxa" is not selected, I have to s... - 01:10 PM feature request #6413 (In Progress): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
- 12:59 PM feature request #8173 (In Progress): spring profile remoting enabled by default
- 12:55 PM feature request #8173 (Resolved): spring profile remoting enabled by default
- Applied in changeset commit:cdmlib|5ab0f6455f6cb83bfba0bb5ad6aee6e210d8dd14.
- 12:48 PM feature request #8173 (In Progress): spring profile remoting enabled by default
- 12:40 PM feature request #8173 (Closed): spring profile remoting enabled by default
- the spring profile still needs to be enabled by passing `-Dspring.profiles.active=remoting` to cdm-remote instances....
- 12:57 PM feature request #8096 (Resolved): Implement CacheUpdater as long running task with correct progress monitoring
- please review
- 12:55 PM Revision 4478751c (taxeditor): ref #8096: set correct task name in progress monitor manager
- 12:55 PM Revision 5ab0f645 (cdmlib): fix #8173 spring profile 'remoting' activated by default
- 12:55 PM Revision 7d340a47 (cdmlib): fix #8171 internally caching new connection in WrappedCdmDataSource to avoid connection leaks
- 12:55 PM Revision 80595b0d (cdmlib): ref #7106 proper transaction management in turn of solving the problem in CdmRepository.getSession()
- 12:55 PM Revision 8db30ca4 (cdmlib): log level for cdm caches to WARN to avoid constant noise from the TransientCdmCacher
- 12:54 PM bug #8171 (Resolved): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed
- Applied in changeset commit:cdmlib|ddaf22cfc36cad56b677c8fecd8eb3e83db5cefb.
- 12:53 PM Revision 99583d95 (cdm-vaadin): ref #8132 proper transaction rollback in CdmStore
- 12:13 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- fixed a small bug in updateCaches of Team.java which results in the result was always true. commit:cdmlib|694f0ef28f3...
- 12:12 PM Revision 694f0ef2 (cdmlib): fix #7874: updateCaches always returns true
- 11:50 AM Revision 6f71379a (cdm-vaadin): ref #8132 proper transaction rollback in RegistrationWorkingsetPresenter
- 08:18 AM Revision 04819529 (cdm-vaadin): adding c3p0.properties to gitignore
- 08:18 AM Revision 8c1dd527 (cdm-vaadin): setting cdmlib version to 5.5.2-SNAPSHOT
03/08/2019
- 07:17 PM feature request #8172 (New): Discuss: Cite an image of the holotype
- Probem: in Micoalgae, a type specimen can be designated, but nobody knows how the taxon looks like. E.g. Two differen...
- 05:28 PM Revision e22b441a (cdmlib): log level for cdm caches to WARN to avoid constant noise from the TransientCdmCacher
- 05:27 PM Revision ddaf22cf (cdmlib): fix #8171 internally caching new connection in WrappedCdmDataSource to avoid connection leaks
- 05:25 PM Revision eb370441 (cdmlib): updating poms for 5.5.2 branch with snapshot versions
- 05:17 PM bug #8132: phycobank cdm-server instance problems with db connections
- Another situation in which a connection is being opened but not properly closed is occurring in the `DataSourceConfig...
- 02:02 PM bug #8132: phycobank cdm-server instance problems with db connections
- debugging the cdm-server to find connections that have been opened but which are not being closed properly (DebugC3P0...
- 05:06 PM bug #8171 (Closed): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed
- When the existing cached connection in the WrappedCdmDataSource is null a new connection will be created but is not s...
- 04:59 PM bug #8170 (New): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not conform to the interface
- the documentation of `javax.sql.DataSource.getConnection()` reads like *"**Attempts to establish** a connection with ...
- 02:26 PM Revision 5479cc9a (cdm-vaadin): ref #8132 fixing problem of uncommited transaction in RegistrationWorkingsetPresenter
- 02:24 PM Revision 06cc1a39 (cdm-vaadin): updating poms for 5.5.3 branch with snapshot versions
- 02:21 PM Revision d2accd99 (cdm-vaadin): ref #8132 fixing problem of uncommited transaction in RegistrationWorkingsetPresenter
03/07/2019
- 04:58 PM Revision 998a72e0 (cdm-vaadin): ref #7106 refactoring CdmStore in turn of changed CdmRepository.getSession()
- - CdmStore as Spring bean
- CdmStore managed transactions and sessions properly - 03:26 PM bug #8169 (New): avoid factory.openSession() in DaoBase
In DaoBase using `factory.openSession()` is plain wrong, the HibernateTransactionManger should be used instead.
- 03:24 PM bug #7106 (In Progress): avoid factory.openSession() in CdmRepository
- 02:17 PM bug #7106: avoid factory.openSession() in CdmRepository
- since February 25th there are only occurrences related to this issue in the log which affected the phycobank code.
W... - 07:25 AM bug #7106: avoid factory.openSession() in CdmRepository
- with the logging of the stacktrace it now becomes clear where the unmanaged sessions are being created:
~~~~
java... - 02:57 PM Revision b7647a99 (cdm-vaadin): ref #7106 using new CdmRepository.clearSession() method
- 02:54 PM Revision 6d6ae033 (cdmlib): ref #7106 logging unintentially creation of unmanaged new session in DaoBase with stacktrace
- 02:54 PM Revision ff628107 (cdmlib): ref #7106 throwing Exception instead of unintentially creating unmanaged new session
- 12:37 PM bug #8132: phycobank cdm-server instance problems with db connections
- The problem just occurred again. This time no one was using the Taxeditor since the instance has been started.
The... - 12:03 PM Revision 93fb962c (cdm-dataportal): fix specimen details page -continue
- 11:21 AM task #8168 (New): Check if withdrawing of per entity permission is working correctly for inReferences
- 11:17 AM bug #8167 (Closed): Permission denied for Submitter when adding section to newly created journal
~~~
[phycobank] 2019-03-07 09:56:41,648 ERROR [qtp1510067370-69] [org.hibernate.internal.SessionImpl] - HHH000346:...- 11:15 AM Revision 9214096f (cdm-dataportal): revert last changes
- 10:12 AM Revision d2deb7ca (cdmlib): ref #8096: use subprogressmonitor for cache updater
- 09:39 AM task #8118: Update MySQL drivers
- Andreas Müller wrote:
> Some solution is setting on command line e.g. for Central European time (CET):
>
> mysql>... - 09:25 AM Revision ade2b1f0 (cdm-dataportal): fix css for specimens
- 08:33 AM Revision 000aa820 (taxeditor): removed cdm.map.ser from taxeditor.cdmlib resources (cont.)
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