Activity

From 02/25/2019 to 03/26/2019

03/21/2019

07:03 PM bug #8192: The curator must be able to unlock a published registration for edition: use the lock and unlock icons from fontawesome:
https://fontawesome.com/icons/lock-open?style=solid
https://fon... Andreas Kohlbecker
06:32 PM bug #8192 (Closed): The curator must be able to unlock a published registration for edition: The curator sometimes needs to modify the data for a registration after it has been published.
Currently it is req... Andreas Kohlbecker
07:01 PM bug #8194: LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name: Initializing the authorteam of the inReferences of the references loaded by the combobox should solve the problem. Andreas Kohlbecker
06:59 PM bug #8194 (Closed): LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of a Name: Habe die Section des eines Namens die als nomenklatorische Referenz gesetzt war löschen wollen:
http://phycoba... Andreas Kohlbecker
06:46 PM feature request #8193 (Closed): TaxonNamePopupEditor: add select form element for Nomenclatural status: Enable to add a nomenclatural status from a subset of status (see TaxEditor).
Exception invalid name in valitation =... Wolf-Henning Kusber
06:26 PM bug #8191 (Closed): ReferencePopupEditor: When coming from NameEdior editing of the inreference should not be blocked: By now when opening the ReferenceEditor for inReference of a TaxonName the user can not modify or set a new inreferen... Andreas Kohlbecker
04:25 PM bug #8189 (Resolved): Allow configuration of 'user.home' via the spring environment: close issue if the changes are not causing any problems. Andreas Kohlbecker
12:15 PM bug #8189 (Closed): Allow configuration of 'user.home' via the spring environment: By now it is only possible to configure the `${user.home}` via the system properties. That means the only option to s... Andreas Kohlbecker
03:03 PM bug #8190 (In Progress): Default FeatureTree throws exception: Patrick Plitzner
01:30 PM bug #8190 (Closed): Default FeatureTree throws exception: When there are Characters and Features in the data base and the default feature tree is created it will fetch all of ... Patrick Plitzner
02:56 PM feature request #8058: Further issues for (local) preferences: the common name language preference is added. Katja Luther
11:43 AM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser: Specimen Editor: auch der erste Typus lässt sich nicht speichern (kritisch)
Andreas Kohlbecker

03/20/2019

04:41 PM feature request #7975: Implement a block to display name relations: Validation:
![](picture156-1.png)
Replacement name:
Wie Validation behandeln,
Zudem wird
1. beim Widg... Andreas Kohlbecker
02:54 PM bug #8188 (In Progress): Allow configuring hibernate properties via properties file: Andreas Kohlbecker
02:54 PM bug #8188 (Closed): Allow configuring hibernate properties via properties file: To allow for more flexible configuration of test environments it would be great if the hibernate properties which are... Andreas Kohlbecker
11:10 AM feature request #8187 (New): Use Spring Environment instead of custom code in AbstractWebApplicationConfigurer: the method `AbstractWebApplicationConfigurer.findProperty(String property, boolean required)` implements a similar st... Andreas Kohlbecker

03/19/2019

07:31 PM feature request #7975: Implement a block to display name relations: Examples correctly in PhycoBank as use case for output improvement:
Example Validation
https://www.phycobank.org... Wolf-Henning Kusber
02:30 PM feature request #7428: Open issues for updating open data while subtree is updated: please review.
Bulkeditor and nameeditor are updated. Katja Luther
01:36 PM bug #8115 (Resolved): NPE when moving factual data: this problem is fixed. Katja Luther
01:29 PM bug #4545 (Resolved): Implement TeamOrPersonBaseSelectionDialog: please review.
TeamOrPerson is used for example for TaxonNodeAgentRelations or for authors in references Katja Luther
12:49 PM feature request #8185 (Feedback): Type layout: Hi Andreas, the same kind of formatting has formerly also been requested by Walter.
I consider this a very good so... Andreas Kohlbecker
09:52 AM feature request #8186 (Duplicate): List view order: ordering by registration numbers is hardly possible, see #7978.
Furthermore is this ticket a duplicate of #8157
Andreas Kohlbecker

03/18/2019

06:02 PM feature request #8186 (Duplicate): List view order: List view in Vaadin should be arranged from new (high registration numbers) to old.
Wolf-Henning Kusber
05:51 PM feature request #8185 (Feedback): Type layout: Type (as is):
Holotype: (BM BM123)
should be:
Holotype: BM (BM123)
see for example: https://www.phycobank... Wolf-Henning Kusber
05:45 PM bug #8184 (Closed): SpecimenTypedesignationEditor: add new specimen broken Chrome browser: In Vaadin, type specimen editor a new line is created when a typ is selected.
This functions in FireFox. This does n... Wolf-Henning Kusber
05:16 PM bug #8183 (In Progress): Make Feature IndividualAssociation a generalization of Specimen and Observation: until now this has been handled in the static method Feature.INDIVIDUALS_ASSOCIATION() which is not the correct place... Andreas Müller
03:55 PM bug #8115 (Feedback): NPE when moving factual data: This setup now works because we have to save before dragging the abstract to the other description
There is howeve... Patrick Plitzner
02:07 PM task #7515: TypeDesignationStatusComparator to sort by vocabulary first and then by term order: Andreas Kohlbecker wrote:
> The Taxeditor should be more resilient against unusual data.
>
> 1. Suggestion as d... Katja Luther
01:33 PM feature request #7433: new service method to get specimen by genetic AccessionNumber: this service method is implemented, but controller method is still missing Katja Luther
01:30 PM feature request #8182 (In Progress): show blast search result: the json result of the blast search should be displayed and the accession number needs to be a link to the correspond... Katja Luther
01:20 PM bug #8148 (Resolved): Login Dialog cuts off information: I put it to resolved to remind me reviewing.
Or are there still open issues? Andreas Müller
01:04 PM bug #8148: Login Dialog cuts off information: I adapted the exception section and I could not reproduce the cutted advanced section (with the actual nightly). Coul... Katja Luther
11:55 AM feature request #5890 (New): Implement auto-suggest for data portal: Patrick Plitzner

03/15/2019

03:29 PM bug #8169: avoid factory.openSession() in DaoBase: VersionableServiceBase.isDeletable misses the @Transactional(readOnly = true) annotation! Andreas Kohlbecker
03:25 PM bug #8169: avoid factory.openSession() in DaoBase: Here is a case found in the server log (occurred 6x in a couple of hours):
~~~
[phycobank] 2019-03-15 10:27:44,... Andreas Kohlbecker
11:44 AM feature request #8181 (New): Further features for bulk editors: this is a ticket to collect all wanted features for bulkeditors:
Advanced search or column filter options:
* ... Katja Luther
10:44 AM feature request #7755: Implement advanced detail page for occurrences: mail from AM:
Hallo Katja,
ich bin im Zuge von FoG über die Specimenseite gestolpert. Sehr schön, dass da jetzt... Katja Luther
09:21 AM feature request #8180 (Closed): Add property term "Presence/Absence" to CDM default terms: When describing a specimen via Characters (almost) all structures may or may not exist. To be able to describe if a s... Patrick Plitzner

03/14/2019

06:26 PM bug #8179 (New): PopupEditorException: Type name editor, PopupEditorException
when saving a name type of a genus
in Workingset
http://api.phycobank.org... Wolf-Henning Kusber
02:12 PM feature request #8178 (Rejected): Auto-create absence/presence character for every structure: Presence/Absence Property (PA)
* Jede Strukture muss in Kombination mit PA-Property einen Character bilden.
* Bei... Patrick Plitzner
02:04 PM feature request #8121 (In Progress): Allow selecting structural/property modifiers when creating a character: Patrick Plitzner
01:56 PM feature request #6849 (In Progress): [DISCUSS] How to handle "kind of" term creation in TermEditor: Patrick Plitzner
12:11 PM feature request #6413 (Resolved): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name: The first implementation allows selection one of the already existing specimen type designation for creating the dupl... Patrick Plitzner

03/13/2019

12:52 PM feature request #8175: add name facts to cdm light export: the name facts are moved to their own table. Katja Luther
09:57 AM feature request #7428 (Resolved): Open issues for updating open data while subtree is updated: Applied in changeset commit:taxeditor|4fff2d21dfed4ae1ba6c5106e7d59cdf2e82548c. Katja Luther
09:36 AM bug #8176 (Resolved): WeaklyRelatedEntityCombobox is slow: test TaxonNamePopupEditor Genus field, replaced Synonym and Basionym also some ToManyRelatedEntitiesComboboxes and T... Andreas Kohlbecker

03/12/2019

05:57 PM bug #8176 (In Progress): WeaklyRelatedEntityCombobox is slow: Andreas Kohlbecker
02:15 PM bug #8176 (Closed): WeaklyRelatedEntityCombobox is slow: ## on setting values
The WeaklyRelatedEntityCombobox needs to check if the value to set is at all contained in the... Andreas Kohlbecker
02:22 PM report #8177 (Worksforme): Discuss: How to add originals of a type specimen: How to store? Wolf-Henning Kusber
01:07 PM bug #6627: Remaining cdm light issues: the name facts are implemented now, see #8175 Katja Luther
01:06 PM feature request #8175: add name facts to cdm light export: please review Katja Luther
01:06 PM feature request #8175 (Resolved): add name facts to cdm light export: Applied in changeset commit:cdmlib|852a1a9e5171370a8e3e6962b21837e38115cf9a. Katja Luther
01:04 PM feature request #8175 (Closed): add name facts to cdm light export: We decided to keep the name facts in cdm, so the name facts should be exported as well Katja Luther
12:53 PM bug #8099: Error saving name type designation editor due to problem in poupeditor context: can not reproduce Andreas Kohlbecker
12:03 PM bug #8111: User selection dialog for groups does not filter out existing users: please review Katja Luther
12:02 PM bug #8111 (Resolved): User selection dialog for groups does not filter out existing users: Applied in changeset commit:taxeditor|cbc83794de4303c54b45309ff151c70627e82e1a. Katja Luther
11:34 AM bug #8115: NPE when moving factual data: please review Katja Luther
11:33 AM bug #8115: NPE when moving factual data: the problem was the not persisted description, therefore the description needs to be passed to the service method. To... Katja Luther
11:26 AM bug #8115 (Resolved): NPE when moving factual data: Applied in changeset commit:taxeditor|803af83ee2911d193d6a95a3f73dee727ae77d45. Katja Luther
09:31 AM feature request #8136: Implement sources for type designations in TaxEditor: please review Katja Luther
09:30 AM feature request #8136 (Resolved): Implement sources for type designations in TaxEditor: Applied in changeset commit:taxeditor|9f40979f5e0d2fc55100acc5a7fabac00d48ce12. Katja Luther
08:36 AM bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop: I did a brief research on the topic of hotfix branches:
1. git flow has the concept of ***support branches*** by whi... Andreas Kohlbecker
08:11 AM task #8130: Check if related feature data is cleared when supported facts type is changed: For nomenclatural code there is a method checkForDeletableParts() where the deletable parts set to null.
But for ... Katja Luther

03/11/2019

02:33 PM bug #8174: First test fails if term data is in loaded DataSet: This is the order how events are handled in unitils:
* [Unitils] beforeTestClass - TestClass1
* [Test] testBefore... Andreas Müller
02:30 PM bug #8174 (New): First test fails if term data is in loaded DataSet: This is because the unitils/dbunit JpaModul starts the application context only during
~~~ java
beforeTestMethod... Andreas Müller
01:53 PM bug #8170: javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not conform to the interface: I opened issue #8171 only for fixing the most severe problem quickly by storing the new connection in the cache field... Andreas Kohlbecker
01:41 PM bug #8170 (Feedback): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not conform to the interface: Is this still an open issue after #8171 is solved now?
I also do not fully understand the solution. In #8171 you s... Andreas Müller
01:41 PM bug #8149: ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL: Related problem:
if e.g. "Phytotaxa" is tiped into the dopdown menue field, "Phytotaxa" is not selected, I have to s... Wolf-Henning Kusber
01:10 PM feature request #6413 (In Progress): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name: Patrick Plitzner
12:59 PM feature request #8173 (In Progress): spring profile remoting enabled by default: Andreas Kohlbecker
12:55 PM feature request #8173 (Resolved): spring profile remoting enabled by default: Applied in changeset commit:cdmlib|5ab0f6455f6cb83bfba0bb5ad6aee6e210d8dd14. Andreas Kohlbecker
12:48 PM feature request #8173 (In Progress): spring profile remoting enabled by default: Andreas Kohlbecker
12:40 PM feature request #8173 (Closed): spring profile remoting enabled by default: the spring profile still needs to be enabled by passing `-Dspring.profiles.active=remoting` to cdm-remote instances.... Andreas Kohlbecker
12:57 PM feature request #8096 (Resolved): Implement CacheUpdater as long running task with correct progress monitoring: please review Katja Luther
12:54 PM bug #8171 (Resolved): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed: Applied in changeset commit:cdmlib|ddaf22cfc36cad56b677c8fecd8eb3e83db5cefb. Andreas Kohlbecker
12:13 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters: fixed a small bug in updateCaches of Team.java which results in the result was always true. commit:cdmlib|694f0ef28f3... Katja Luther

03/08/2019

07:17 PM feature request #8172 (New): Discuss: Cite an image of the holotype: Probem: in Micoalgae, a type specimen can be designated, but nobody knows how the taxon looks like. E.g. Two differen... Wolf-Henning Kusber
05:17 PM bug #8132: phycobank cdm-server instance problems with db connections: Another situation in which a connection is being opened but not properly closed is occurring in the `DataSourceConfig... Andreas Kohlbecker
02:02 PM bug #8132: phycobank cdm-server instance problems with db connections: debugging the cdm-server to find connections that have been opened but which are not being closed properly (DebugC3P0... Andreas Kohlbecker
05:06 PM bug #8171 (Closed): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed: When the existing cached connection in the WrappedCdmDataSource is null a new connection will be created but is not s... Andreas Kohlbecker
04:59 PM bug #8170 (New): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not conform to the interface: the documentation of `javax.sql.DataSource.getConnection()` reads like *"**Attempts to establish** a connection with ... Andreas Kohlbecker

03/07/2019

03:26 PM bug #8169 (New): avoid factory.openSession() in DaoBase: In DaoBase using `factory.openSession()` is plain wrong, the HibernateTransactionManger should be used instead.
Andreas Kohlbecker
03:24 PM bug #7106 (In Progress): avoid factory.openSession() in CdmRepository: Andreas Kohlbecker
02:17 PM bug #7106: avoid factory.openSession() in CdmRepository: since February 25th there are only occurrences related to this issue in the log which affected the phycobank code.
W... Andreas Kohlbecker
07:25 AM bug #7106: avoid factory.openSession() in CdmRepository: with the logging of the stacktrace it now becomes clear where the unmanaged sessions are being created:
~~~~
java... Andreas Kohlbecker
12:37 PM bug #8132: phycobank cdm-server instance problems with db connections: The problem just occurred again. This time no one was using the Taxeditor since the instance has been started.
The... Andreas Kohlbecker
11:21 AM task #8168 (New): Check if withdrawing of per entity permission is working correctly for inReferences: Andreas Kohlbecker
11:17 AM bug #8167 (Closed): Permission denied for Submitter when adding section to newly created journal: ~~~
[phycobank] 2019-03-07 09:56:41,648 ERROR [qtp1510067370-69] [org.hibernate.internal.SessionImpl] - HHH000346:... Andreas Kohlbecker
09:39 AM task #8118: Update MySQL drivers: Andreas Müller wrote:
> Some solution is setting on command line e.g. for Central European time (CET):
>
> mysql>... Katja Luther

03/06/2019

08:57 PM task #8118: Update MySQL drivers: Some solution is setting on command line e.g. for Central European time (CET):
mysql> SET GLOBAL time_zone = '+1:0... Andreas Müller
08:19 PM task #8118: Update MySQL drivers: Katja, I think you also had the problem localy. What did you do to fix it? Andreas Müller
08:11 PM task #8118: Update MySQL drivers: This is what I currently get when connecting to MySQL on PESIHPC:
~~~
Caused by: com.mysql.cj.exceptions.InvalidC... Andreas Müller
08:06 PM task #8118: Update MySQL drivers: https://stackoverflow.com/questions/26515700/mysql-jdbc-driver-5-1-33-time-zone-issue Andreas Müller
05:00 PM bug #7106: avoid factory.openSession() in CdmRepository: In a locally running cdmserver started vi the eclipse launcher *cdm-server - start from war* multiple occurrences can... Andreas Kohlbecker
01:56 PM task #8166 (Closed): Adapt dataportal to term structure changes: the dataportal needs to be adapted to the changes applied in the context of #6794 Andreas Kohlbecker
01:05 PM task #8162: Move term related classes from model.common to model.term: Andreas Müller wrote:
> Other classes to move: Sources und IntextReferences, Rights, IReferencedEntity, ReferencedE... Andreas Müller
01:03 PM task #8162: Move term related classes from model.common to model.term: Also move FeatureNode and FeatureTree to new term package as they become TermTreeNode and TermTree Andreas Müller
10:49 AM task #8130: Check if related feature data is cleared when supported facts type is changed: Katja, could you please check how we do these "model validations" in terms of e.g. nomenclatural code changes in Taxo... Andreas Müller
10:14 AM task #8130 (Feedback): Check if related feature data is cleared when supported facts type is changed: Andreas Müller wrote:
> We may want to implement hard or soft validation for this. Maybe also an update script to re... Patrick Plitzner
10:07 AM task #8130 (In Progress): Check if related feature data is cleared when supported facts type is changed: Patrick Plitzner
10:44 AM feature request #8165 (New): enable logback jmx for cdm-server: having the logback jmx beans enabled would be a great help during debugging of the production server and other system... Andreas Kohlbecker
10:23 AM bug #5632: ClassNotFoundException for org.eclipse.jetty.servlet.listener.ELContextCleaner during taxeditor mvn integration-test: Moving the ticket back to decide what we want to do with it Patrick Plitzner
10:19 AM bug #5632: ClassNotFoundException for org.eclipse.jetty.servlet.listener.ELContextCleaner during taxeditor mvn integration-test: This exception is still thrown when the test is run.
This is the log of the last jenkins run: http://int.e-taxonom... Patrick Plitzner
08:51 AM bug #8164 (New): ClassNotFoundException during deserialization for Reference: Andreas K.: "Ich habe in dem Produktions-Server-Log seit Oktober 10x
`org.springframework.web.util.NestedServletEx... Patrick Plitzner

03/05/2019

05:39 PM task #8162: Move term related classes from model.common to model.term: Andreas Müller wrote:
> we should also adapt persistence layer
done Andreas Müller
12:43 PM task #8162 (Resolved): Move term related classes from model.common to model.term: Applied in changeset commit:taxeditor|974d02d015234ec80816dfb47eaabde6688c2fa9. Andreas Müller
12:24 PM task #8162 (In Progress): Move term related classes from model.common to model.term: Andreas Müller
12:23 PM task #8162: Move term related classes from model.common to model.term: we should also adapt persistence layer Andreas Müller
12:12 PM task #8162 (Resolved): Move term related classes from model.common to model.term: Applied in changeset commit:taxeditor|b9dc6bb1d38897b06888836dd74d48684f73c5d5. Andreas Müller
10:52 AM task #8162: Move term related classes from model.common to model.term: Other classes to move: Sources und IntextReferences, Rights, IReferencedEntity, ReferencedEntityBase, Language? Andreas Müller
05:22 PM bug #8132: phycobank cdm-server instance problems with db connections: Results from the server log:
The problem occurred again. The jdbc connection which was being used by the tread `qt... Andreas Kohlbecker
02:58 PM bug #8107 (Closed): NPE when throwing PopupEditorException in AbstractPopupEditor: issue is not reproducible - closing. Andreas Kohlbecker
11:49 AM feature request #8163 (Rejected): RegistrationService.setStatus() method implemented: This method need to be used by the RegistrationWorkingsetPresenter.saveRegistrationStatusChange() method in cdm-vaadi... Andreas Kohlbecker
11:21 AM bug #8161 (Rejected): *FilterablePagingProvider classes as transactional readonly spring beans: the *FilterablePagingProviders only are using service methods which are anyway annotated with `@Transactional(readOnl... Andreas Kohlbecker
11:21 AM bug #7945 (Rejected): TaxonNamePopupEditor: missing genus causes exception when updating name parts visibility: the *FilterablePagingProviders only are using service methods which are anyway annotated with `@Transactional(readOnl... Andreas Kohlbecker
11:14 AM bug #8075 (In Progress): multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations: Andreas Kohlbecker
10:55 AM bug #8158: cascade="all-delete-orphan" problem when ....: potentially duplicate of #8160 Andreas Kohlbecker

03/04/2019

03:19 PM task #8162 (Closed): Move term related classes from model.common to model.term: This means moving the following model classes:
* DefinedTerm
* DefinedTermBase
* OrderedTerm
* OrderedTermBase
... Andreas Müller
03:06 PM bug #7881: reference selection combobox broken after error in ...: potentially duplicate of #8161 Andreas Kohlbecker
03:04 PM bug #7945: TaxonNamePopupEditor: missing genus causes exception when updating name parts visibility: potentially duplicate of #8161 Andreas Kohlbecker
03:00 PM bug #8065: HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table: potentially duplicate of #8160 Andreas Kohlbecker
02:07 PM bug #8160 (Resolved): CdmBeanItemContainerFactory as readonly service bean: Andreas Kohlbecker
12:43 PM bug #8160 (Closed): CdmBeanItemContainerFactory as readonly service bean: Turning the CdmBeanItemContainerFactory into a readonly service bean should solve the cascade="all-delete-orphan" pro... Andreas Kohlbecker
12:47 PM bug #8161 (Rejected): *FilterablePagingProvider classes as transactional readonly spring beans: Turing the TaxonNameStringFilterablePagingProvider into a readonly service bean should solve the cascade="all-delete-... Andreas Kohlbecker
11:52 AM task #4600 (New): Investigate and implement tests for security in cdm-vaadin: Andreas Kohlbecker
11:51 AM task #4600 (In Progress): Investigate and implement tests for security in cdm-vaadin: Andreas Kohlbecker
11:47 AM bug #7879: Book CacheStrategy does not show 'place published', 'publisher', 'editor': Hi Andreas, I am passing this to you since it is a bug in the cache strategy and closely related to #1866 Andreas Kohlbecker
11:39 AM feature request #8124 (Resolved): Activate Name Facts in Taxeditor: please review Katja Luther
07:42 AM task #8159 (New): Replace LocalSelectionTransfer for DnD operations: Using LocalSelectionTransfer is in most cases too generic. It is better to define an own TransferData and assign the ... Patrick Plitzner

03/01/2019

11:05 PM feature request #6794: Improve term structure: Current idea for a solution:
Collections:
* Common base class TermCollection(Base) for all Vocabularies and Graphs ... Andreas Müller
04:05 PM bug #8132: phycobank cdm-server instance problems with db connections: It seems as if this problem is being cased by the CdmFilterablePagingProvider which might open an new Sesscion which ... Andreas Kohlbecker
02:46 PM bug #8132: phycobank cdm-server instance problems with db connections: this here https://stackoverflow.com/questions/34408362/c3p0-connection-pool-gives-connection-timeout-error-with-this-... Andreas Kohlbecker
01:58 PM bug #8132: phycobank cdm-server instance problems with db connections: Andreas Kohlbecker wrote:
> I set `testConnectionsOnCheckIn=true` temporarily via jmx in order to test if this helps... Andreas Kohlbecker
11:13 AM task #615 (Closed): remove suns repository: the repository
~~~xml

<repository>
<id>java.net</id>
<url>http:... Andreas Kohlbecker
11:11 AM task #615 (Resolved): remove suns repository: Applied in changeset commit:cdmlib|d402220f823edfb01ec9385d20117d6afee9a77d. Andreas Kohlbecker
10:17 AM feature request #8150 (Resolved): Allow editing the representation label of characters in details view: Patrick Plitzner
07:17 AM bug #8158 (Closed): cascade="all-delete-orphan" problem when ....: I seem to remember that I did the following:
1. RegistrationWorkingsetEditor at http://api.phycobank.org/phycobank... Andreas Kohlbecker

02/28/2019

09:54 PM feature request #8157 (New): Registration list view: sort registrations by the same order as in the dataportal: newer registrations should come first.
Oder by created when! (agreed) Andreas Kohlbecker
09:50 PM feature request #8156: Registration items show type status in bold letters: should be easy to implement, thus i am setting the priority to high Andreas Kohlbecker
09:50 PM feature request #8156 (Closed): Registration items show type status in bold letters: The type status in registration items is not easy to see. Making the status bold would improve the readability. Andreas Kohlbecker
09:47 PM feature request #8155 (Feedback): SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status: Andreas Kohlbecker
09:47 PM feature request #8155: SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status: For how urgent do you consider this feature, Henning? I guess this situation will occur quite frequently? Andreas Kohlbecker
09:42 PM feature request #8155 (Feedback): SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status: In case of lecto-, epit- and neo-types the SpecimenTypeDesignationEditor should selecting the typified name from the ... Andreas Kohlbecker
05:30 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.: the test page http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/c6716cee-2039-4ba8-a239-... Andreas Kohlbecker
04:12 PM bug #8154 (Worksforme): NameController.doGetTaggedName fails due to [UPDATE] not permitted for 'anonymousUser' on Person: http://160.45.63.173:8081/phycobank/name/a2b01d35-fdcf-43fb-8376-f03f195c6e06/taggedName.json
fails every ~4 times... Andreas Kohlbecker
03:05 PM bug #8152 (Duplicate): ReferencePopupEditor: inReference field allows to select references with type GEN but field validation fails in this case: Henning: References with type 'Generic' must not be in the list, filter only by matching type
So this is a duplica... Andreas Kohlbecker
01:05 PM bug #8152 (Duplicate): ReferencePopupEditor: inReference field allows to select references with type GEN but field validation fails in this case: Heba reported an error which was due the Journal "Rickia" having the Referencetype 'Generic'
The reference could b... Andreas Kohlbecker
01:30 PM feature request #8153 (Closed): Adapt cdmlib to FeatureNode/FeatureTree model changes: * Since the introduction of term trees with the last model change (5.6.0) `FeatureNode.getFeature()` is deprecated an... Patrick Plitzner
12:16 PM feature request #4611 (New): I18n for the TaxEditor menu: sorry, was a mistake Andreas Müller
12:12 PM feature request #4611 (Resolved): I18n for the TaxEditor menu: Andreas Müller
12:14 PM feature request #8124: Activate Name Facts in Taxeditor: Katja Luther wrote:
> when activating the name facts for the name displayed in the details view, the details view is... Katja Luther
11:24 AM feature request #8124: Activate Name Facts in Taxeditor: when activating the name facts for the name displayed in the details view, the details view is the selectionProviding... Katja Luther
11:57 AM bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference: OK Andreas Kohlbecker
11:52 AM bug #7107 (New): "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference: Ich glaube nicht, dass das für E+M relevant ist, da wir in E+M ja das E+M Voc verwenden, welches keine Omit levels ha... Andreas Müller
11:37 AM bug #7107 (Feedback): "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference: Hallo Andreas, ich denke das ist auch für Euro+Med releveant, oder?
Wenn ja, sollten wir das Tag hinzufügen und di... Andreas Kohlbecker
11:57 AM feature request #4610: [DISCUSS] I18n for the EDIT platform: Please do not move unreviewed tickets to Reviewed milestone Andreas Müller
11:05 AM bug #8151 (Resolved): after creating a new synonym and pasting a name string the default string is not removed: the call of placeCursor() caused that the cursor was at the end of the "Klicken, um ..." string. Removing this method... Katja Luther
10:58 AM bug #8151 (Closed): after creating a new synonym and pasting a name string the default string is not removed: mail von S. v. M.:
Beim Reinkopieren eines neuen Synonyms blieb der Text “Klicken, um Namen hinzuzufügen” stehen.
... Katja Luther
08:07 AM feature request #8146: Adapt taxeditor UI to structure and property term type: Add character to term menu with commit:2c98dda6165033a58c7df8c06b21518d380307b3 Patrick Plitzner

02/27/2019

03:52 PM bug #8132: phycobank cdm-server instance problems with db connections: I set `testConnectionsOnCheckIn=true` temporarily via jmx in order to test if this helps avoiding this connectivity p... Andreas Kohlbecker
03:30 PM feature request #8124: Activate Name Facts in Taxeditor: for the name bulk editor the name facts are activated now.
still missing is the activation if name is selected in ... Katja Luther
02:24 PM feature request #8150 (Closed): Allow editing the representation label of characters in details view: Patrick Plitzner
01:56 PM feature request #8136 (In Progress): Implement sources for type designations in TaxEditor: Katja Luther
10:34 AM bug #8149 (Closed): ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL: In reference type = article
Drop down of Journals should only search for entries = journal (not for all references)
... Wolf-Henning Kusber
10:19 AM bug #8148 (In Progress): Login Dialog cuts off information: Katja Luther
10:18 AM bug #8148 (Resolved): Login Dialog cuts off information: Applied in changeset commit:taxeditor|a08af9f9d2b8840b48fc63b647aca9ee0a34b68c. Katja Luther
09:38 AM bug #8148 (Closed): Login Dialog cuts off information: In the case of an exception and for the advanced section information is not correctly displayed.
![](picture896-1.... Patrick Plitzner
09:34 AM feature request #8147 (Resolved): Add "plural" to representation detail element: Fixed with commit:taxeditor|754fbf873ca0b63addc6842c089298fff76eb30d Patrick Plitzner
08:44 AM feature request #8147 (Closed): Add "plural" to representation detail element: Patrick Plitzner
08:37 AM feature request #8146 (Closed): Adapt taxeditor UI to structure and property term type: 1. ~~Add term editor menu for each~~
1. ~~Restrict tree selection in CharacterEditor~~
1. ~~Restrict context menu,... Patrick Plitzner

02/26/2019

04:55 PM feature request #3616: Show DescriptionElementBase.timeperiod in Dataportals: Improvements for formatting copied to #8145 Andreas Müller
02:37 PM feature request #3616: Show DescriptionElementBase.timeperiod in Dataportals: Andreas Müller wrote:
> Generally it looks fine.
>
> Only the formatting maybe needs discussion. It differs from... Andreas Kohlbecker
02:26 PM feature request #3616 (Feedback): Show DescriptionElementBase.timeperiod in Dataportals: Generally it looks fine.
Only the formatting maybe needs discussion. It differs from the default formatting of ti... Andreas Müller
01:00 PM feature request #3616 (Resolved): Show DescriptionElementBase.timeperiod in Dataportals: Implemented
please review, for the page used by the integration test, please see : http://int.e-taxonomy.eu/datapo... Andreas Kohlbecker
03:09 PM feature request #8145 (New): Implement TimePeriod DTO with localized formatting: for details see #3616#note-10 ff.
Once implemented we also need to adapt dataportal code to use the new timeperiod... Andreas Müller
01:42 PM task #7356: setup selenium test suite for cdm-vaadin: Adding master thesis on Vaadin TestBench Andreas Kohlbecker
12:12 PM feature request #8144: Check if modifiers and modifyingText is handled correctly for description elements in data portals: since modifiers and modifyingText can not be added to the database easily I need to wait until the issue #3836 is com... Andreas Kohlbecker
11:10 AM task #8118: Update MySQL drivers: Andreas Müller wrote:
> Starting with MySQL JDBC Driver 5.1.33 serverTimezone needs to be explicitly defined in conn... Andreas Kohlbecker

02/25/2019

10:08 PM feature request #3746: Implement time period scope for description elements in TaxEditor: Andreas Kohlbecker wrote:
> The output in the taxeditor can very ugly depending on the partial fields being used:
>... Andreas Müller
05:28 PM feature request #3746: Implement time period scope for description elements in TaxEditor: The output in the taxeditor can very ugly depending on the partial fields being used:
* Timescope: start month: ... Andreas Kohlbecker
10:01 PM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor: As we have decided to check for old unimplemented model issues in this version I add it to current milestone. But we ... Andreas Müller
08:54 PM bug #8140 (Resolved): Update list of type designation status which allow an explicit source: Applied in changeset commit:cdmlib|2a0a678b59b88779f6db98619be4d4510ea26f93. Andreas Müller
02:31 PM bug #8140 (Closed): Update list of type designation status which allow an explicit source: This list is currently returned by transient method TypeDesignationStatusBase.isLectotpye().
Currently it contains... Andreas Müller
08:54 PM bug #7772: Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation: Applied in changeset commit:cdmlib|3b49207de7d71fa2af4fcd8a6e7d913dc654d733. Andreas Müller
08:54 PM bug #7859: Increase size of CdmPreference.value: Applied in changeset commit:cdmlib|da556b1537505b615fe45afc8ea7f0d06c5d256b. Andreas Müller
08:28 PM task #8118 (Feedback): Update MySQL drivers: Starting with MySQL JDBC Driver 5.1.33 serverTimezone needs to be explicitly defined in connection string or one may ... Andreas Müller
06:22 PM bug #8143 (Resolved): It is possible to open multiple instances of the login dialog: Applied in changeset commit:taxeditor|e25ce35073e04836a1b382da50faf21ab605ae16. Patrick Plitzner
05:45 PM bug #8143 (Closed): It is possible to open multiple instances of the login dialog: With every click on General -> Login another login dialog is opened.
This could be potentially dangerous because t... Patrick Plitzner
06:13 PM feature request #3747 (Closed): Check if time period is handled correctly for description elements in data portals: check for and modifiers and modifyingText copied to new ticket, closing this issue Andreas Kohlbecker
06:08 PM feature request #3747: Check if time period is handled correctly for description elements in data portals: since modifiers and modifyingText can not be added to the data easily I need to wait until the issue #3836 is complet... Andreas Kohlbecker
06:03 PM feature request #3747 (In Progress): Check if time period is handled correctly for description elements in data portals: The scope of this ticket includes modifiers and modifyingText ... reopening issue Andreas Kohlbecker
06:00 PM feature request #3747 (Closed): Check if time period is handled correctly for description elements in data portals: the output of timeperiod for DescriptionElements is missing so far in the Dataportal. So ticket #3616 becomes relevan... Andreas Kohlbecker
06:10 PM feature request #8144 (In Progress): Check if modifiers and modifyingText is handled correctly for description elements in data portals: not relevant for TextData as we expect that TextData will handle modifiers with its text (see #3836)
Andreas Kohlbecker
06:04 PM feature request #3616 (In Progress): Show DescriptionElementBase.timeperiod in Dataportals: Andreas Kohlbecker
05:45 PM feature request #8142 (Resolved): Representations have optional "plural" as additional field: Andreas Müller
05:32 PM feature request #8142 (Closed): Representations have optional "plural" as additional field: additional to label (required), description (optional, but recommended), abbrevLabel(optional)
https://wiki.bgbm.o... Andreas Müller
04:00 PM bug #8105 (In Progress): better hotfix branch strategy in git flow to avoid commits in master which are missing in develop: it turned out that it can happen that cherries need to be modified when picking them from hotfix to develop. This hap... Andreas Kohlbecker
03:48 PM bug #8132: phycobank cdm-server instance problems with db connections: Andreas Kohlbecker wrote:
> I added `autoReconnect=true` to the connection string of the phycobank datasource.
us... Andreas Kohlbecker
03:21 PM bug #8132: phycobank cdm-server instance problems with db connections: I added `autoReconnect=true` to the connection string of the phycobank datasource. Andreas Kohlbecker
01:06 PM bug #8132: phycobank cdm-server instance problems with db connections: these connectivity problems should be prevented by c3p0 since the `idleConnectionTestPeriod` is set to `600` (10 minu... Andreas Kohlbecker
02:48 PM feature request #8017 (Resolved): TypeDesignations need sources additional to lectotypifcation sources: We may also want to rename the existing "citation" attribute. This will be doen within #6581 Andreas Müller
02:37 PM bug #8141 (New): explicitSource as additional attribute for TypeDesignationStatus: Some type designation status do allow an explicit source (see #8139). Currently the list of status are handled hardco... Andreas Müller
02:15 PM feature request #8139 (Resolved): [Rule] Validate lectotype sources: Andreas Müller
02:10 PM feature request #8139 (Resolved): [Rule] Validate lectotype sources: Lectotypes and some other type status allow an additional source which mentions in which source the lectotypification... Andreas Müller
02:04 PM feature request #6665 (New): Add "Add specimen duplicate" context menu item to specimen editor: Ok, maybe I closed this too fast. #6413 serves more as a master ticket and this is one step in solving it. Patrick Plitzner
02:01 PM feature request #6665 (Duplicate): Add "Add specimen duplicate" context menu item to specimen editor: Closed as duplicate because the issue description is fully copied to #6413
Also the discussion is done there Patrick Plitzner

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