Activity
From 02/06/2019 to 03/07/2019
03/07/2019
- 03:26 PM bug #8169 (New): avoid factory.openSession() in DaoBase
In DaoBase using `factory.openSession()` is plain wrong, the HibernateTransactionManger should be used instead.
- 03:24 PM bug #7106 (In Progress): avoid factory.openSession() in CdmRepository
- 02:17 PM bug #7106: avoid factory.openSession() in CdmRepository
- since February 25th there are only occurrences related to this issue in the log which affected the phycobank code.
W... - 07:25 AM bug #7106: avoid factory.openSession() in CdmRepository
- with the logging of the stacktrace it now becomes clear where the unmanaged sessions are being created:
~~~~
java... - 12:37 PM bug #8132: phycobank cdm-server instance problems with db connections
- The problem just occurred again. This time no one was using the Taxeditor since the instance has been started.
The... - 11:21 AM task #8168 (New): Check if withdrawing of per entity permission is working correctly for inReferences
- 11:17 AM bug #8167 (Closed): Permission denied for Submitter when adding section to newly created journal
~~~
[phycobank] 2019-03-07 09:56:41,648 ERROR [qtp1510067370-69] [org.hibernate.internal.SessionImpl] - HHH000346:...- 09:39 AM task #8118: Update MySQL drivers
- Andreas Müller wrote:
> Some solution is setting on command line e.g. for Central European time (CET):
>
> mysql>...
03/06/2019
- 08:57 PM task #8118: Update MySQL drivers
- Some solution is setting on command line e.g. for Central European time (CET):
mysql> SET GLOBAL time_zone = '+1:0... - 08:19 PM task #8118: Update MySQL drivers
- Katja, I think you also had the problem localy. What did you do to fix it?
- 08:11 PM task #8118: Update MySQL drivers
- This is what I currently get when connecting to MySQL on PESIHPC:
~~~
Caused by: com.mysql.cj.exceptions.InvalidC... - 08:06 PM task #8118: Update MySQL drivers
- https://stackoverflow.com/questions/26515700/mysql-jdbc-driver-5-1-33-time-zone-issue
- 05:00 PM bug #7106: avoid factory.openSession() in CdmRepository
- In a locally running cdmserver started vi the eclipse launcher *cdm-server - start from war* multiple occurrences can...
- 01:56 PM task #8166 (Closed): Adapt dataportal to term structure changes
- the dataportal needs to be adapted to the changes applied in the context of #6794
- 01:05 PM task #8162: Move term related classes from model.common to model.term
- Andreas Müller wrote:
> Other classes to move: Sources und IntextReferences, Rights, IReferencedEntity, ReferencedE... - 01:03 PM task #8162: Move term related classes from model.common to model.term
- Also move FeatureNode and FeatureTree to new term package as they become TermTreeNode and TermTree
- 10:49 AM task #8130: Check if related feature data is cleared when supported facts type is changed
- Katja, could you please check how we do these "model validations" in terms of e.g. nomenclatural code changes in Taxo...
- 10:14 AM task #8130 (Feedback): Check if related feature data is cleared when supported facts type is changed
- Andreas Müller wrote:
> We may want to implement hard or soft validation for this. Maybe also an update script to re... - 10:07 AM task #8130 (In Progress): Check if related feature data is cleared when supported facts type is changed
- 10:44 AM feature request #8165 (New): enable logback jmx for cdm-server
- having the logback jmx beans enabled would be a great help during debugging of the production server and other system...
- 10:23 AM bug #5632: ClassNotFoundException for org.eclipse.jetty.servlet.listener.ELContextCleaner during taxeditor mvn integration-test
- Moving the ticket back to decide what we want to do with it
- 10:19 AM bug #5632: ClassNotFoundException for org.eclipse.jetty.servlet.listener.ELContextCleaner during taxeditor mvn integration-test
- This exception is still thrown when the test is run.
This is the log of the last jenkins run: http://int.e-taxonom... - 08:51 AM bug #8164 (New): ClassNotFoundException during deserialization for Reference
- Andreas K.: "Ich habe in dem Produktions-Server-Log seit Oktober 10x
`org.springframework.web.util.NestedServletEx...
03/05/2019
- 05:39 PM task #8162: Move term related classes from model.common to model.term
- Andreas Müller wrote:
> we should also adapt persistence layer
done - 12:43 PM task #8162 (Resolved): Move term related classes from model.common to model.term
- Applied in changeset commit:taxeditor|974d02d015234ec80816dfb47eaabde6688c2fa9.
- 12:24 PM task #8162 (In Progress): Move term related classes from model.common to model.term
- 12:23 PM task #8162: Move term related classes from model.common to model.term
- we should also adapt persistence layer
- 12:12 PM task #8162 (Resolved): Move term related classes from model.common to model.term
- Applied in changeset commit:taxeditor|b9dc6bb1d38897b06888836dd74d48684f73c5d5.
- 10:52 AM task #8162: Move term related classes from model.common to model.term
- Other classes to move: Sources und IntextReferences, Rights, IReferencedEntity, ReferencedEntityBase, Language?
- 05:22 PM bug #8132: phycobank cdm-server instance problems with db connections
- Results from the server log:
The problem occurred again. The jdbc connection which was being used by the tread `qt... - 02:58 PM bug #8107 (Closed): NPE when throwing PopupEditorException in AbstractPopupEditor
- issue is not reproducible - closing.
- 11:49 AM feature request #8163 (Rejected): RegistrationService.setStatus() method implemented
- This method need to be used by the RegistrationWorkingsetPresenter.saveRegistrationStatusChange() method in cdm-vaadi...
- 11:21 AM bug #8161 (Rejected): *FilterablePagingProvider classes as transactional readonly spring beans
- the *FilterablePagingProviders only are using service methods which are anyway annotated with `@Transactional(readOnl...
- 11:21 AM bug #7945 (Rejected): TaxonNamePopupEditor: missing genus causes exception when updating name parts visibility
- the *FilterablePagingProviders only are using service methods which are anyway annotated with `@Transactional(readOnl...
- 11:14 AM bug #8075 (In Progress): multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations
- 10:55 AM bug #8158: cascade="all-delete-orphan" problem when ....
- potentially duplicate of #8160
03/04/2019
- 03:19 PM task #8162 (Closed): Move term related classes from model.common to model.term
- This means moving the following model classes:
* DefinedTerm
* DefinedTermBase
* OrderedTerm
* OrderedTermBase
... - 03:06 PM bug #7881: reference selection combobox broken after error in ...
- potentially duplicate of #8161
- 03:04 PM bug #7945: TaxonNamePopupEditor: missing genus causes exception when updating name parts visibility
- potentially duplicate of #8161
- 03:00 PM bug #8065: HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table
- potentially duplicate of #8160
- 02:07 PM bug #8160 (Resolved): CdmBeanItemContainerFactory as readonly service bean
- 12:43 PM bug #8160 (Closed): CdmBeanItemContainerFactory as readonly service bean
- Turning the CdmBeanItemContainerFactory into a readonly service bean should solve the cascade="all-delete-orphan" pro...
- 12:47 PM bug #8161 (Rejected): *FilterablePagingProvider classes as transactional readonly spring beans
- Turing the TaxonNameStringFilterablePagingProvider into a readonly service bean should solve the cascade="all-delete-...
- 11:52 AM task #4600 (New): Investigate and implement tests for security in cdm-vaadin
- 11:51 AM task #4600 (In Progress): Investigate and implement tests for security in cdm-vaadin
- 11:47 AM bug #7879: Book CacheStrategy does not show 'place published', 'publisher', 'editor'
- Hi Andreas, I am passing this to you since it is a bug in the cache strategy and closely related to #1866
- 11:39 AM feature request #8124 (Resolved): Activate Name Facts in Taxeditor
- please review
- 07:42 AM task #8159 (New): Replace LocalSelectionTransfer for DnD operations
- Using LocalSelectionTransfer is in most cases too generic. It is better to define an own TransferData and assign the ...
03/01/2019
- 11:05 PM feature request #6794: Improve term structure
- Current idea for a solution:
Collections:
* Common base class TermCollection(Base) for all Vocabularies and Graphs ... - 04:05 PM bug #8132: phycobank cdm-server instance problems with db connections
- It seems as if this problem is being cased by the CdmFilterablePagingProvider which might open an new Sesscion which ...
- 02:46 PM bug #8132: phycobank cdm-server instance problems with db connections
- this here https://stackoverflow.com/questions/34408362/c3p0-connection-pool-gives-connection-timeout-error-with-this-...
- 01:58 PM bug #8132: phycobank cdm-server instance problems with db connections
- Andreas Kohlbecker wrote:
> I set `testConnectionsOnCheckIn=true` temporarily via jmx in order to test if this helps... - 11:13 AM task #615 (Closed): remove suns repository
- the repository
~~~xml
<!-- sun repository -->
<repository>
<id>java.net</id>
<url>http:... - 11:11 AM task #615 (Resolved): remove suns repository
- Applied in changeset commit:cdmlib|d402220f823edfb01ec9385d20117d6afee9a77d.
- 10:17 AM feature request #8150 (Resolved): Allow editing the representation label of characters in details view
- 07:17 AM bug #8158 (Closed): cascade="all-delete-orphan" problem when ....
- I seem to remember that I did the following:
1. RegistrationWorkingsetEditor at http://api.phycobank.org/phycobank...
02/28/2019
- 09:54 PM feature request #8157 (New): Registration list view: sort registrations by the same order as in the dataportal
- newer registrations should come first.
Oder by created when! (agreed) - 09:50 PM feature request #8156: Registration items show type status in bold letters
- should be easy to implement, thus i am setting the priority to high
- 09:50 PM feature request #8156 (Closed): Registration items show type status in bold letters
- The type status in registration items is not easy to see. Making the status bold would improve the readability.
- 09:47 PM feature request #8155 (Feedback): SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status
- 09:47 PM feature request #8155: SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status
- For how urgent do you consider this feature, Henning? I guess this situation will occur quite frequently?
- 09:42 PM feature request #8155 (Feedback): SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status
- In case of lecto-, epit- and neo-types the SpecimenTypeDesignationEditor should selecting the typified name from the ...
- 05:30 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- the test page http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/c6716cee-2039-4ba8-a239-...
- 04:12 PM bug #8154 (Worksforme): NameController.doGetTaggedName fails due to [UPDATE] not permitted for 'anonymousUser' on Person
- http://160.45.63.173:8081/phycobank/name/a2b01d35-fdcf-43fb-8376-f03f195c6e06/taggedName.json
fails every ~4 times... - 03:05 PM bug #8152 (Duplicate): ReferencePopupEditor: inReference field allows to select references with type GEN but field validation fails in this case
- Henning: References with type 'Generic' must not be in the list, filter only by matching type
So this is a duplica... - 01:05 PM bug #8152 (Duplicate): ReferencePopupEditor: inReference field allows to select references with type GEN but field validation fails in this case
- Heba reported an error which was due the Journal "Rickia" having the Referencetype 'Generic'
The reference could b... - 01:30 PM feature request #8153 (Closed): Adapt cdmlib to FeatureNode/FeatureTree model changes
- * Since the introduction of term trees with the last model change (5.6.0) `FeatureNode.getFeature()` is deprecated an...
- 12:16 PM feature request #4611 (New): I18n for the TaxEditor menu
- sorry, was a mistake
- 12:12 PM feature request #4611 (Resolved): I18n for the TaxEditor menu
- 12:14 PM feature request #8124: Activate Name Facts in Taxeditor
- Katja Luther wrote:
> when activating the name facts for the name displayed in the details view, the details view is... - 11:24 AM feature request #8124: Activate Name Facts in Taxeditor
- when activating the name facts for the name displayed in the details view, the details view is the selectionProviding...
- 11:57 AM bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
- OK
- 11:52 AM bug #7107 (New): "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
- Ich glaube nicht, dass das für E+M relevant ist, da wir in E+M ja das E+M Voc verwenden, welches keine Omit levels ha...
- 11:37 AM bug #7107 (Feedback): "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
- Hallo Andreas, ich denke das ist auch für Euro+Med releveant, oder?
Wenn ja, sollten wir das Tag hinzufügen und di... - 11:57 AM feature request #4610: [DISCUSS] I18n for the EDIT platform
- Please do not move unreviewed tickets to Reviewed milestone
- 11:05 AM bug #8151 (Resolved): after creating a new synonym and pasting a name string the default string is not removed
- the call of placeCursor() caused that the cursor was at the end of the "Klicken, um ..." string. Removing this method...
- 10:58 AM bug #8151 (Closed): after creating a new synonym and pasting a name string the default string is not removed
- mail von S. v. M.:
Beim Reinkopieren eines neuen Synonyms blieb der Text “Klicken, um Namen hinzuzufügen” stehen.
... - 08:07 AM feature request #8146: Adapt taxeditor UI to structure and property term type
- Add character to term menu with commit:2c98dda6165033a58c7df8c06b21518d380307b3
02/27/2019
- 03:52 PM bug #8132: phycobank cdm-server instance problems with db connections
- I set `testConnectionsOnCheckIn=true` temporarily via jmx in order to test if this helps avoiding this connectivity p...
- 03:30 PM feature request #8124: Activate Name Facts in Taxeditor
- for the name bulk editor the name facts are activated now.
still missing is the activation if name is selected in ... - 02:24 PM feature request #8150 (Closed): Allow editing the representation label of characters in details view
- 01:56 PM feature request #8136 (In Progress): Implement sources for type designations in TaxEditor
- 10:34 AM bug #8149 (Closed): ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic and NULL
- In reference type = article
Drop down of Journals should only search for entries = journal (not for all references)
... - 10:19 AM bug #8148 (In Progress): Login Dialog cuts off information
- 10:18 AM bug #8148 (Resolved): Login Dialog cuts off information
- Applied in changeset commit:taxeditor|a08af9f9d2b8840b48fc63b647aca9ee0a34b68c.
- 09:38 AM bug #8148 (Closed): Login Dialog cuts off information
- In the case of an exception and for the advanced section information is not correctly displayed.
: Add "plural" to representation detail element
- Fixed with commit:taxeditor|754fbf873ca0b63addc6842c089298fff76eb30d
- 08:44 AM feature request #8147 (Closed): Add "plural" to representation detail element
- 08:37 AM feature request #8146 (Closed): Adapt taxeditor UI to structure and property term type
- 1. ~~Add term editor menu for each~~
1. ~~Restrict tree selection in CharacterEditor~~
1. ~~Restrict context menu,...
02/26/2019
- 04:55 PM feature request #3616: Show DescriptionElementBase.timeperiod in Dataportals
- Improvements for formatting copied to #8145
- 02:37 PM feature request #3616: Show DescriptionElementBase.timeperiod in Dataportals
- Andreas Müller wrote:
> Generally it looks fine.
>
> Only the formatting maybe needs discussion. It differs from... - 02:26 PM feature request #3616 (Feedback): Show DescriptionElementBase.timeperiod in Dataportals
- Generally it looks fine.
Only the formatting maybe needs discussion. It differs from the default formatting of ti... - 01:00 PM feature request #3616 (Resolved): Show DescriptionElementBase.timeperiod in Dataportals
- Implemented
please review, for the page used by the integration test, please see : http://int.e-taxonomy.eu/datapo... - 03:09 PM feature request #8145 (New): Implement TimePeriod DTO with localized formatting
- for details see #3616#note-10 ff.
Once implemented we also need to adapt dataportal code to use the new timeperiod... - 01:42 PM task #7356: setup selenium test suite for cdm-vaadin
- Adding master thesis on Vaadin TestBench
- 12:12 PM feature request #8144: Check if modifiers and modifyingText is handled correctly for description elements in data portals
- since modifiers and modifyingText can not be added to the database easily I need to wait until the issue #3836 is com...
- 11:10 AM task #8118: Update MySQL drivers
- Andreas Müller wrote:
> Starting with MySQL JDBC Driver 5.1.33 serverTimezone needs to be explicitly defined in conn...
02/25/2019
- 10:08 PM feature request #3746: Implement time period scope for description elements in TaxEditor
- Andreas Kohlbecker wrote:
> The output in the taxeditor can very ugly depending on the partial fields being used:
>... - 05:28 PM feature request #3746: Implement time period scope for description elements in TaxEditor
- The output in the taxeditor can very ugly depending on the partial fields being used:
* Timescope: start month: ... - 10:01 PM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
- As we have decided to check for old unimplemented model issues in this version I add it to current milestone. But we ...
- 08:54 PM bug #8140 (Resolved): Update list of type designation status which allow an explicit source
- Applied in changeset commit:cdmlib|2a0a678b59b88779f6db98619be4d4510ea26f93.
- 02:31 PM bug #8140 (Closed): Update list of type designation status which allow an explicit source
- This list is currently returned by transient method TypeDesignationStatusBase.isLectotpye().
Currently it contains... - 08:54 PM bug #7772: Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
- Applied in changeset commit:cdmlib|3b49207de7d71fa2af4fcd8a6e7d913dc654d733.
- 08:54 PM bug #7859: Increase size of CdmPreference.value
- Applied in changeset commit:cdmlib|da556b1537505b615fe45afc8ea7f0d06c5d256b.
- 08:28 PM task #8118 (Feedback): Update MySQL drivers
- Starting with MySQL JDBC Driver 5.1.33 serverTimezone needs to be explicitly defined in connection string or one may ...
- 06:22 PM bug #8143 (Resolved): It is possible to open multiple instances of the login dialog
- Applied in changeset commit:taxeditor|e25ce35073e04836a1b382da50faf21ab605ae16.
- 05:45 PM bug #8143 (Closed): It is possible to open multiple instances of the login dialog
- With every click on General -> Login another login dialog is opened.
This could be potentially dangerous because t... - 06:13 PM feature request #3747 (Closed): Check if time period is handled correctly for description elements in data portals
- check for and modifiers and modifyingText copied to new ticket, closing this issue
- 06:08 PM feature request #3747: Check if time period is handled correctly for description elements in data portals
- since modifiers and modifyingText can not be added to the data easily I need to wait until the issue #3836 is complet...
- 06:03 PM feature request #3747 (In Progress): Check if time period is handled correctly for description elements in data portals
- The scope of this ticket includes modifiers and modifyingText ... reopening issue
- 06:00 PM feature request #3747 (Closed): Check if time period is handled correctly for description elements in data portals
- the output of timeperiod for DescriptionElements is missing so far in the Dataportal. So ticket #3616 becomes relevan...
- 06:10 PM feature request #8144 (In Progress): Check if modifiers and modifyingText is handled correctly for description elements in data portals
- not relevant for TextData as we expect that TextData will handle modifiers with its text (see #3836)
- 06:04 PM feature request #3616 (In Progress): Show DescriptionElementBase.timeperiod in Dataportals
- 05:45 PM feature request #8142 (Resolved): Representations have optional "plural" as additional field
- 05:32 PM feature request #8142 (Closed): Representations have optional "plural" as additional field
- additional to label (required), description (optional, but recommended), abbrevLabel(optional)
https://wiki.bgbm.o... - 04:00 PM bug #8105 (In Progress): better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- it turned out that it can happen that cherries need to be modified when picking them from hotfix to develop. This hap...
- 03:48 PM bug #8132: phycobank cdm-server instance problems with db connections
- Andreas Kohlbecker wrote:
> I added `autoReconnect=true` to the connection string of the phycobank datasource.
us... - 03:21 PM bug #8132: phycobank cdm-server instance problems with db connections
- I added `autoReconnect=true` to the connection string of the phycobank datasource.
- 01:06 PM bug #8132: phycobank cdm-server instance problems with db connections
- these connectivity problems should be prevented by c3p0 since the `idleConnectionTestPeriod` is set to `600` (10 minu...
- 02:48 PM feature request #8017 (Resolved): TypeDesignations need sources additional to lectotypifcation sources
- We may also want to rename the existing "citation" attribute. This will be doen within #6581
- 02:37 PM bug #8141 (New): explicitSource as additional attribute for TypeDesignationStatus
- Some type designation status do allow an explicit source (see #8139). Currently the list of status are handled hardco...
- 02:15 PM feature request #8139 (Resolved): [Rule] Validate lectotype sources
- 02:10 PM feature request #8139 (Resolved): [Rule] Validate lectotype sources
- Lectotypes and some other type status allow an additional source which mentions in which source the lectotypification...
- 02:04 PM feature request #6665 (New): Add "Add specimen duplicate" context menu item to specimen editor
- Ok, maybe I closed this too fast. #6413 serves more as a master ticket and this is one step in solving it.
- 02:01 PM feature request #6665 (Duplicate): Add "Add specimen duplicate" context menu item to specimen editor
- Closed as duplicate because the issue description is fully copied to #6413
Also the discussion is done there
02/24/2019
- 01:33 PM feature request #7653 (Resolved): [DISCUSS] Delete NameFacts => Result: no
- The public flag requirement from #7653#note-5 was moved to a new ticket #8138. I think we can close this ticket now ...
- 12:47 PM feature request #7653: [DISCUSS] Delete NameFacts => Result: no
- Unification of extensions and facts moved to new ticket #8133
- 01:30 PM feature request #8138 (Closed): [DISCUSS] Publish flag for facts and type designations
- In #7653#note-5 there was the wish for an individual publish flag on type desginations (especially for text based typ...
- 01:11 PM feature request #8137 (Feedback): Implement sources for type designations in data portal
- For details see #8017.
Be aware that there are 2 different types of sources "lectotype"(hasDesignationSource) sour... - 01:04 PM feature request #8136 (Closed): Implement sources for type designations in TaxEditor
- For details see #8017.
Be aware that there are 2 different types of sources "lectotype" sources and general source... - 12:58 PM feature request #8135 (Closed): Implement verbatim type information in TaxEditor
- for details see #7470 and #7653
1. Implement a new detail element for verbatim type designations
2. Implement but... - 12:53 PM feature request #8134 (Closed): Implement verbatim type information in dataportal
- For details see also #7653#note-5.
Implementation of verbatim type information in cdm in #7470 - 12:41 PM feature request #8019: Add "Typification Notes", "Ortography" and "Etymology" to NameFeature vocabulary
- Also "Ortography" and "Etymology" added.
- 12:28 PM feature request #8133 (New): [DISCUSS] Combine Facts and Extensions
- for a first discussion see #7653
Facts (DescriptionsElements) and Extensions are both meant for a generic extensio...
02/23/2019
- 01:01 AM bug #8024 (Duplicate): IndexOutOfBoundsException caused by RegistrationWorkingSet.getRegistrationDate()
- seems to be duplicate for #7895
- 12:46 AM bug #7896: NPE, NullPointerException in RelationshipTermBase
- There is not much information what data to use for reproducing error. However, I think dbb48641 should fix the proble...
- 12:42 AM bug #7896 (Resolved): NPE, NullPointerException in RelationshipTermBase
- Applied in changeset commit:cdmlib|dbb486417a2345628d068d0470c845b1cb3dee3a.
- 12:15 AM feature request #6316: display source references of media objects in media page
- To me it looks like this is already implemented. I add to current milestone just to check. Either close+remove milest...
- 12:08 AM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships()
- Shouldn't this be closed? See #note-26
02/22/2019
- 06:38 PM bug #8132 (Worksforme): phycobank cdm-server instance problems with db connections
the phycobank cdm-server instance which is running in a docker container got problems with the db connections
P...- 06:28 PM bug #8119 (Rejected): Link a PhycoBank Id in a Proof to Portal
- this is only a side effect of as problem with the server which fails to respond sometimes
- 05:54 PM bug #8119: Link a PhycoBank Id in a Proof to Portal
- the requires status message seems to be visible only for logged in users:
- 06:18 PM feature request #8093 (Closed): harmonize registrationId links and make tesing easier
- 06:17 PM feature request #8093 (Resolved): harmonize registrationId links and make tesing easier
- Applied in changeset commit:cdm-dataportal|977bba78560ff1387b601420f9c55409ac19fd92.
- 06:09 PM bug #6380: typedesignations missing in homotypic group
- Is this still a relevant issue once #7696 is fixed. As the later is on 5.6 I also moved **this** back. If we decide t...
- 06:02 PM feature request #7696: use compact type representations in the synonymy as provided by the typedesignations/byTaxon/{taxon_uuid} service
- This is related to the current milestone topic (typification) so I suggest to keep in current milestone. Also I think...
- 05:59 PM feature request #7408: [E+M] Support for preferred common names in data portal
- This is important for E+M and was promised for 5.5 already. Ok to keep in current milestone?
- 05:51 PM bug #2074: network independend CdmUpdaterTest
- yes this can be closed
- 04:22 PM bug #2074 (Rejected): network independend CdmUpdaterTest
- I am no longer using eu.etaxonomy.cdm.database.update.CdmUpdaterTest since cdm-remote supports the `force-scheamupdat...
- 05:47 PM feature request #5807: Implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()
- As this is E+M related I put it to highest. We may discuss who will finally fix it. I have to work on transmission en...
- 04:45 PM feature request #5807 (New): Implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()
- this is still not working:
http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/search/results/taxo... - 04:10 PM feature request #5807 (Feedback): Implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()
- trying to reproduce this at the euro+med portal, since this taxon no longer is found in the caucasus portal:
http:... - 05:37 PM feature request #7470 (Resolved): Verbatim type designation information
- 05:22 PM bug #5774: cdmserver misses to detect some errors in failed instances
- I guess you are right. I was lowering the priority that much because the issue has not been reported for 2 years, but...
- 04:03 PM bug #5774: cdmserver misses to detect some errors in failed instances
- hmm, I consider this a very anoying and dagerous bug as one may not realize that some instances do work (we do not ha...
- 05:15 PM bug #7087 (Worksforme): description/accumulateDistributions webservice can not be triggered
- tested by using httpie and it works again, it seems this has been fixed meanwhile
- 05:03 PM bug #7106 (Feedback): avoid factory.openSession() in CdmRepository
- I am modifying the logging in mentioned case to allow us checking in the server logs if this case is actually happeni...
- 04:34 PM feature request #8120 (Resolved): Add structural and property modifiers
- 10:05 AM feature request #8120 (In Progress): Add structural and property modifiers
- 09:28 AM feature request #8120 (Closed): Add structural and property modifiers
- We need two specialized modifier types in the context of character creation:
* Structure modifier
* defining the... - 04:18 PM bug #8131 (Rejected): reindexing fuction in dataportal setting reports fails
- it was really the wrong credentials that i used
- 04:09 PM bug #8131 (Rejected): reindexing fuction in dataportal setting reports fails
- even with correct credentials "Error: Are your credentials correct?" is being reported
- 03:52 PM bug #7938: cdmserver sub-processes (threads) with constant high cpu
- this never occurred since 3 months, lowering priority
- 03:41 PM bug #8105 (Closed): better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- 03:31 PM bug #8099: Error saving name type designation editor due to problem in poupeditor context
- Da gab es mehrere Korrekturen und Bearbeitungen [vielleicht ein Spezialproblem, das im normalen Betrieb nicht vorkomm...
- 10:01 AM bug #8099: Error saving name type designation editor due to problem in poupeditor context
- AHH ich glaube jetzt habe ich es. Ein alter Dump der DB hat mir*Geitleriaceae Kilgore & J.R.Johans.* auf die Sprünge...
- 01:34 PM task #8130: Check if related feature data is cleared when supported facts type is changed
- We may want to implement hard or soft validation for this. Maybe also an update script to remove existing data (if it...
- 01:16 PM task #8130 (In Progress): Check if related feature data is cleared when supported facts type is changed
- For example:
1. Set a feature to support quantitative data and assign recommended measurement units, statistical m... - 01:28 PM bug #7703 (New): Multiple names cannot be shown in TypeDesignationDetailElement for specimens
- 01:28 PM bug #7703: Multiple names cannot be shown in TypeDesignationDetailElement for specimens
- Displaying the names is not the problem. What would take time is implementing the possibility of editing them. Right ...
- 01:00 PM bug #7703: Multiple names cannot be shown in TypeDesignationDetailElement for specimens
- Patrick Plitzner wrote:
> Before I try to fix this: Is this a frequent use case? Because you can also just create tw... - 01:09 PM feature request #7741: Refresh supplemental data view title when editing terms
- This is still an open issue. But I would rather fix this together with the other refresh tickets of #4135. It is more...
- 12:36 PM feature request #7741: Refresh supplemental data view title when editing terms
- Is this still an open issue or has it been fixed with the new term editor implementation?
If not yet fixed we shou... - 12:31 PM bug #8129 (Closed): Load images asynchronously in media details view
- Loading images takes often very long if full size images with e.g. ~10MB are involved. Currently the TaxEditor become...
- 12:27 PM bug #5632: ClassNotFoundException for org.eclipse.jetty.servlet.listener.ELContextCleaner during taxeditor mvn integration-test
- We recently talked about this issue. I just moved it to the release to check if it still happens and if there is an e...
- 12:22 PM feature request #8011 (In Progress): Implement term search view
- 11:32 AM bug #8126: Mediarepresentations should not be shown in Referencing objects view
- AM:
gibt es für das Problem, dass MediaRepresentations bei den referencing objects von Media angezeigt werden eige... - 11:02 AM bug #8126 (New): Mediarepresentations should not be shown in Referencing objects view
- MediaRepresentations belonging to the media object therefore they should not be shown in the referencing objects view...
- 11:29 AM feature request #7860: [Master] Remaining E+M editor issues
- E+M should be highest priority
- 11:25 AM feature request #8128 (In Progress): Add indicator for feature facts and/or vocabularies which description type they support
- 11:24 AM feature request #8128 (Duplicate): Add indicator for feature facts and/or vocabularies which description type they support
- we need to distinguish if features and/or their vocabularies support taxon facts, specimen facts and/or name facts.
... - 11:25 AM feature request #8124: Activate Name Facts in Taxeditor
- Also consider #8128 for future implementations.
- 11:19 AM feature request #8124: Activate Name Facts in Taxeditor
- Can we also activate name facts in the same way as supplemental data are activated => if focus is explicitly on a nam...
- 10:30 AM feature request #8124 (In Progress): Activate Name Facts in Taxeditor
- 10:30 AM feature request #8124 (Closed): Activate Name Facts in Taxeditor
- Namefacts should be shown for names in bulk editor. (see discussion in #7653)
Therefore following is needed:
* ac... - 11:18 AM bug #6627: Remaining cdm light issues
- Can you add the name facts to the TODO list? Is there an explicit ticket?
- 10:25 AM bug #6627: Remaining cdm light issues
- the name facts should be implemented in 5.6
- 11:07 AM task #8127 (Discussed): [Reminder] to check if Hibernate Null Value bug still exists
- see #5681 for details
https://hibernate.atlassian.net/browse/HHH-9751 (closed as duplicate, still open issue is ht... - 11:03 AM feature request #7637: Handle intext references in CDM light
- Andreas Müller wrote:
> Do we really want to keep in 5.6. We wanted to work on intext references in 5.7.
ups no, ... - 11:02 AM feature request #7637: Handle intext references in CDM light
- Do we really want to keep in 5.6. We wanted to work on intext references in 5.7.
- 11:00 AM task #7515: TypeDesignationStatusComparator to sort by vocabulary first and then by term order
- We may also include the upcoming new term structure (using TermCollections) #6794.
- 10:37 AM feature request #8089: improve abcd preference page
- Does this not fit to our current milestone which includes preferences?
- 10:33 AM bug #8125 (New): ClassCastException when adding person to newly created team
- Hallo,
vermutlich ein ungünstiges Timing ...
Bulk Editor, neues Team, cache eingegeben -> Details view, Add Person,... - 10:26 AM feature request #8123 (Closed): Make available features a DB preference
- ... also distinguish taxon facts, specimen facts and name facts.
Adapt this also in the local preferences.
Stor... - 10:20 AM bug #5278: Creating new taxon is slow in some cases
- when creating a new taxonnode with a lot of siblings it takes some time because the sortindex is newly set for all si...
- 10:16 AM feature request #8046: Term lists in term manager should be positiv lists
- Doesn't this belong much to the focus of our current milestone (terms, preferences, typification). So maybe we can ke...
- 10:07 AM feature request #7810: DB preference to make Specimen editors visible
- Because some major issues were implemented in 5.4. However, I think we should split the ticket for all remaining issu...
- 09:01 AM feature request #7810: DB preference to make Specimen editors visible
- Andreas Müller wrote:
> Patrick Plitzner wrote:
> > @all: Why is this ticket still open? What is left to do?
>
>... - 10:01 AM bug #7689 (Worksforme): Mutliple representation exception when creating taxon nodes
- I think this is fixed with the restructured taxonnode wizard (see #7680)
- 09:45 AM feature request #8096 (In Progress): Implement CacheUpdater as long running task with correct progress monitoring
- 09:44 AM bug #8115 (In Progress): NPE when moving factual data
- 09:35 AM feature request #8122 (New): Implement selection of modifier vocabulary for structures and properties
- In the term editor for structure and property terms it should be possible to select one or more modifier vocabularies...
- 09:32 AM feature request #8121 (Closed): Allow selecting structural/property modifiers when creating a character
- When creating a character from a structure and a property the user can select from a predefined list of available mod...
02/21/2019
- 05:18 PM feature request #7810: DB preference to make Specimen editors visible
- Patrick Plitzner wrote:
> @all: Why is this ticket still open? What is left to do?
Isn't this quite obvious. See ... - 04:41 PM feature request #7810: DB preference to make Specimen editors visible
- Patrick Plitzner wrote:
> @Katja: Can you take a look at my last commit please commit:taxeditor|06ae687fc2061c691d70... - 04:04 PM feature request #7810: DB preference to make Specimen editors visible
- @Katja: Can you take a look at my last commit please commit:taxeditor|06ae687fc2061c691d70c87b1da7e8b41b903385
@al... - 05:10 PM task #8118: Update MySQL drivers
- I read through the change sets, all are looking as expected.
As next step we should run a test against a maria db ... - 03:28 PM task #8118 (Resolved): Update MySQL drivers
- 02:26 PM task #8118: Update MySQL drivers
- compile error fixed
- 02:04 PM task #8118 (In Progress): Update MySQL drivers
- I added both drivers to cdmlib-db (b137f4e3)
- 02:02 PM task #8118 (Feedback): Update MySQL drivers
- We are using old JDBC drivers for MySQL. ALso we do not have drivers for MariaDB. Should be added.
- 03:50 PM bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- note for developers added to the ticket description .....
- 03:40 PM bug #8105 (Resolved): better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- by this the git-hfx-cherry-check should be executed for all HFX_FINISH jobs, in case of errors the job will FAIL sinc...
- 03:36 PM bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- and ... using git-hfx-cherry-check.sh in gitflow-finish.sh and maven-gitflow-HOTFIX-finish.sh
- 03:22 PM bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- Script to check for cherries in the HFX Finish jobs created: https://dev.e-taxonomy.eu/svn/trunk/server-scripts/jenki...
- 03:22 PM bug #7703 (Feedback): Multiple names cannot be shown in TypeDesignationDetailElement for specimens
- Before I try to fix this: Is this a frequent use case? Because you can also just create two TypeDesignation with diff...
- 09:18 AM bug #7703: Multiple names cannot be shown in TypeDesignationDetailElement for specimens
- This belongs content wise to our current milestone. Please decide if we should move it to 5.6 and who should work on it
- 02:41 PM bug #8117: CdmFilterablePagingProviderFactory.taxonNamesWithoutOrthographicIncorrect() causes performance overhead
- Correction: The sql query showing the problem is:
~~~sql
select
this_.id as id1_499_2_, this_.created as cr... - 12:29 PM bug #8117: CdmFilterablePagingProviderFactory.taxonNamesWithoutOrthographicIncorrect() causes performance overhead
- the most time is actually consumed by
Do we need to update the mysql driver for some r... - 12:24 PM bug #8117: CdmFilterablePagingProviderFactory.taxonNamesWithoutOrthographicIncorrect() causes performance overhead
- The query created by the restriction performs not so bad (55ms):
~~~sql
select
this_.id as id1_499_2_, this_... - 11:32 AM bug #8117 (New): CdmFilterablePagingProviderFactory.taxonNamesWithoutOrthographicIncorrect() causes performance overhead
in
CdmFilterablePagingProviderFactory.taxonNamesWithoutOrthophicIncorrect()
a restriction is being used whic...- 02:28 PM bug #8119 (Rejected): Link a PhycoBank Id in a Proof to Portal
- Proof (as of 21 Feb 2019), Phytotaxa:
Heterocapsa triquetra var. litoralis Er.Lindem., nom. corr. (Turland et al., 2... - 12:01 PM bug #8088: Open taxon node wizard issues
- The hotfix tasks seem to work now.
- 10:58 AM bug #8088 (Resolved): Open taxon node wizard issues
- please review the hotfix tasks.
- 09:30 AM bug #8088: Open taxon node wizard issues
- Hallo,
bekomme diese Fehlermeldung beim Anlegen eines neuen Taxons.
viele Grüße und schöne WE
Nadja
~~~ tex... - 11:37 AM bug #7772 (Resolved): Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
- Renamed TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation and attribute term_id to definedTermB...
- 11:28 AM bug #8116 (New): ProgressMonitorManager: logging instead of System.err
- In the ProgressMonitorManager an ignored error is logged to `System.err.println`
All logging should go to the logg... - 11:06 AM bug #8099 (Feedback): Error saving name type designation editor due to problem in poupeditor context
- 11:05 AM bug #8099: Error saving name type designation editor due to problem in poupeditor context
- Hakllo Henning
ich verstehe Step 2,3 oben nicht, was hat du da genau gemacht?
Andreas - 10:27 AM bug #6784 (Feedback): Right click menu in Specimen Editor appears after Details View refresh
- When I tested, the context menu was rendered first and afterwards the details view. Could you try again? Maybe this i...
- 09:49 AM bug #8115: NPE when moving factual data
- Katja: I assign this to you because it has to do with the operations of the NameEditor which are executed during saving.
- 09:35 AM bug #8115 (Closed): NPE when moving factual data
- Steps to reproduce:
1. Create the following factual data 
1. Move the abstract element with ...
02/20/2019
- 11:31 PM bug #7772 (In Progress): Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
- 07:13 PM bug #8114 (Duplicate): used author name cache in nomenclatural reference
- For taxonomists/users it might be misleading when in the name editor the bibliographic authors are shown. In case of ...
- 03:45 PM feature request #7923 (New): Add context menu and drag'n'drop to CharacterEditor
- 03:45 PM bug #7112 (New): Ask for saving dirty editors when closing Taxeditor
- 03:45 PM feature request #6774 (New): Implement OWL export
- 02:29 PM bug #6205 (Duplicate): Move excluded nodes to the bottom of the list in TaxEditor navigator
- this is already implmented in #6547
- 12:19 PM bug #8113 (In Progress): Update TypeDesignationStatus labels
- 12:19 PM bug #8113 (Closed): Update TypeDesignationStatus labels
- ~~Currently SpecimentTypeDesig use upper case while NameTypeDesignations uses lower case.~~ => #9263. Also check corr...
- 09:52 AM bug #8088: Open taxon node wizard issues
- Ich habe versucht das Taxon eines Taxonnodes zu ändern und bekam den Fehler unten.
Gibt es dafür schon ein Ticket? K...
02/19/2019
- 11:19 PM bug #8112: Refresh for Group doesn't work
- This seems to be related to #2414 though #2414 is closed. Maybe behavior changed with remoting.
It is also relevan... - 11:15 PM bug #8112 (New): Refresh for Group doesn't work
- How to:
* Open User bulk editor and Group bulk editor and search for "*"
* In User bulk editor choose a user and ... - 11:02 PM bug #8111 (Closed): User selection dialog for groups does not filter out existing users
- ... but shows all users by "*". Same holds for Group selection dialog for Users.
- 06:57 PM feature request #7912: Enhance checkbox tree viewer
- Please always add the follow up tickets to the "related issues" section, too.
- 05:46 PM bug #8097: Problem with inserting a section - inReference is "lost"
- issue completed.
Please review. - 05:46 PM bug #8097 (Resolved): Problem with inserting a section - inReference is "lost"
- Applied in changeset commit:cdm-vaadin|2bcb1498b2db48c720edfcfcac25e733be35cfb8.
- 05:07 PM bug #8097: Problem with inserting a section - inReference is "lost"
- As first solution to this problem we decided on making the inReference field required for all iSection refernfence ty...
- 04:48 PM bug #5699 (Closed): user profile settigs in cdm_dataportal module done wrong
- 04:48 PM bug #5699 (Resolved): user profile settigs in cdm_dataportal module done wrong
- Applied in changeset commit:cdm-dataportal|bf31af5f546f2b686f6d05c1357ce41d4bf6d09c.
- 04:46 PM bug #5699: user profile settigs in cdm_dataportal module done wrong
- this feature isn't used in any of the portals can can be removed.
- 04:13 PM task #4564: [Post 3.4] Check if originalLabelInfo is handled correctly in CdmDataPortal
- Havn't we decided to handle model change tickets in current release?
- 04:08 PM bug #8104 (Closed): TaxonName.getLastNamePart erroneously renamed .getFamiliyNamePart
- The revert looks reasonable
- 11:31 AM bug #8104: TaxonName.getLastNamePart erroneously renamed .getFamiliyNamePart
- Please can you have a quick look on the reversion of your commit?
- 11:30 AM bug #8104 (Resolved): TaxonName.getLastNamePart erroneously renamed .getFamiliyNamePart
- Applied in changeset commit:cdmlib|6b548bff807c53bdc4e3676d4b74b83b8f31be4f.
- 04:04 PM feature request #7747: Enhance display for URI element
- The space is reserved by the URI element for error messages when parsing the URI.
I chang... - 02:49 PM feature request #7695 (In Progress): web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- 12:53 PM bug #8110 (New): Editing name in bulkeditor sets nameEditor dirty, but saving nameEditor after bulk editor reverts the changes
- when editing a name which is open in name bulk editor and in name editor sets both editors dirty. But the changes are...
- 11:02 AM feature request #4922: GrantedAuthorities not reusable anymore
- I have concerns about duplicating GAs as this will complicate first data inserters and managing of default GAs in gen...
- 10:27 AM task #8109: Concept for linking from taxon entries to name pages
- most important will be that it is configurable per project how and where all the different information is shown.
- 09:29 AM task #8109 (New): Concept for linking from taxon entries to name pages
- Taxon entries in the data portal do not allow to navigate to the according name page.
This will become important o... - 10:14 AM feature request #7653 (In Progress): [DISCUSS] Delete NameFacts => Result: no
- We decided to keep name facts to handle categories like "Notes on typification" or "Etymology".
We still need to ... - 09:18 AM feature request #8108: Name page shows complete name information (I)
- Hallo,
...
Allerdings ist die Frage schon interessant: Das wirkliche Potential Taxon fehlt halt in >99% der F... - 09:17 AM feature request #8108: Name page shows complete name information (I)
- Hallo,
will ja nicht pingelig sein, aber ein „Name used in Source“ ist ja im Prinzip ein Potential Taxon und kann ... - 09:16 AM feature request #8108: Name page shows complete name information (I)
- AM:
Wichtig wäre hier auch die Frage, wie man diese expliziten Namensinformationen auf einer normalen Taxonpage ve... - 09:15 AM feature request #8108 (Closed): Name page shows complete name information (I)
- Derzeit ist diese Seite mehr oder weniger nur ein Weiterleitungsmechanismus zu den zugehörigen Taxa.
Die besser a...
02/18/2019
- 10:34 PM feature request #8017 (In Progress): TypeDesignations need sources additional to lectotypifcation sources
- 06:05 PM bug #8107 (Feedback): NPE when throwing PopupEditorException in AbstractPopupEditor
- 06:05 PM bug #8107: NPE when throwing PopupEditorException in AbstractPopupEditor
- [Henning:]
> Hier waren Gattungsnamen vor dem Import nicht verfügbar, daher wurde das Pflichtfeld Gattungsname nic... - 05:01 PM bug #8107 (In Progress): NPE when throwing PopupEditorException in AbstractPopupEditor
- The NPE occurred during while creating the PopupEditorException to be thrown in turn of an other exception which has ...
- 04:51 PM bug #8107 (Closed): NPE when throwing PopupEditorException in AbstractPopupEditor
- Heba reported an NPE which occurred while saving a name popup editor:
Problem beim Speichern um 10:08 Uhr.
http:/... - 04:11 PM feature request #8106 (Closed): improve image gallery settings labeling
- done!
- 04:11 PM feature request #8106 (Resolved): improve image gallery settings labeling
- Applied in changeset commit:cdm-dataportal|5358baffb125a13d97910717acfcca8e978d63f5.
- 04:03 PM feature request #8106 (Closed): improve image gallery settings labeling
- requested by AM:
Vielleicht könnte man bei der Configuration den Text noch etwas anpassen, so dass klar ist was pa... - 12:22 PM bug #8105 (In Progress): better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- During the release of the taxeditor 5.5.0 it turned out, that the `master`branch has received commits from the `hotfi...
- 11:42 AM task #7811: Import higher classifications
- I give this back for review
- 09:51 AM bug #8104 (Closed): TaxonName.getLastNamePart erroneously renamed .getFamiliyNamePart
- **The TaxonName property `lastNamePart` has erroneously been changed during the refactoring for #7238 to `familyNam...
02/15/2019
- 04:57 PM bug #8101 (New): cdm-server docker container uses wrong timezone
- The docker container uses UTC but should be in the same timezone as the host system.
~~~~
edit-production ~ # dat... - 04:40 PM bug #8098 (Duplicate): Cache update for Portal view
- I can no longer reproduce this problem, the reference looks ok now.
I thus will close this issue as duplicate of #... - 04:02 PM bug #8098: Cache update for Portal view
- seems to be a result from update problem in documented in #8100
- 03:24 PM bug #8098 (Duplicate): Cache update for Portal view
- Documentation (release version):
ID 100486 was prepared as shown in the screen shot.
Under curation the journal "... - 04:37 PM bug #8100: Cache update in UI
- It seems as if the updating of in-reference Article is not causing the contained reference section to be updated.
- 04:30 PM bug #8100: Cache update in UI
- in the article just the journal was missing
- 04:30 PM bug #8100: Cache update in UI
- Did not update the in-reference
- 04:29 PM bug #8100: Cache update in UI
- Did you update the inreference "Fottea"? The Article was not touched?
- 04:00 PM bug #8100 (New): Cache update in UI
- If a reference has been not correct when preparing novelties
And the reference was updated,
the uncorrected referen... - 03:51 PM bug #8099 (Closed): Error saving name type designation editor due to problem in poupeditor context
- Documentation:
Step 1: open Name type of "Geitleriaceae"
Step 2: type name was wrong, select unregistered genus nam... - 02:33 PM bug #8097 (Closed): Problem with inserting a section - inReference is "lost"
- IAPT Entry:
BACILLARIOPHYCEAE
Astartiella bahusiensis (Grunov) Witk., Lange-Bert. & Metzeltin
in Biblioth. Diato... - 12:55 PM task #7811: Import higher classifications
- Euastrum exists with 2 authors. Arbitrarily Euastrum Ralfs, Brit. Desmid.: 49, 78. 1848 has been taken for import of ...
- 12:24 PM task #7811: Import higher classifications
- Wolf-Henning Kusber wrote:
> Navicula Grunow is an old import error to be deleted
>
> Navicula Bory is the only r... - 12:21 PM task #7811: Import higher classifications
- Wolf-Henning Kusber wrote:
> Arachnophyllum exists 2x in ae5e4774-9657-4910-812c-937e2ebe5647. Once as child of Dele... - 12:20 PM task #7811: Import higher classifications
- Wolf-Henning Kusber wrote:
> Gymnocystodinium exists 2x in 174d5905-9b28-406d-8e15-98958123b4ae: with parent Gymnodi... - 11:40 AM task #7811: Import higher classifications
- Navicula Grunow is an old import error to be deleted
Navicula Bory is the only right one - 11:37 AM task #7811: Import higher classifications
- Navicula exists 2x as accepted taxon in Phycobank, with 2 different authors. During import of 03c791d0-2da4-42d0-8bc6...
- 11:13 AM task #7811: Import higher classifications
- Arachnophyllum exists 2x in ae5e4774-9657-4910-812c-937e2ebe5647. Once as child of Delesserioideae, 2nd time as child...
- 11:07 AM task #7811: Import higher classifications
- Gymnocystodinium exists 2x in 174d5905-9b28-406d-8e15-98958123b4ae: with parent Gymnodiniaceae and child Gymnodinium ...
- 11:01 AM task #7811: Import higher classifications
- Wolf-Henning Kusber wrote:
> #9
> Eolimna exists twice in 03c791d0-2da4-42d0-8bc6-15a2154ad241.
> To be deleted: O... - 10:54 AM task #7811: Import higher classifications
- Arachnophyllum exists 2x in ae5e4774-9657-4910-812c-937e2ebe5647. Once as child of Delesserioideae, 2nd time as child...
- 10:50 AM task #7811: Import higher classifications
- Gymnocystodinium exists 2x in 174d5905-9b28-406d-8e15-98958123b4ae: with parent Gymnodiniaceae and child Gymnodinium ...
- 10:17 AM task #7811: Import higher classifications
- #9
Eolimna exists twice in 03c791d0-2da4-42d0-8bc6-15a2154ad241.
To be deleted: Once as direct child of Naviculales... - 09:35 AM task #7811: Import higher classifications
- Ordo of Polypodochrysis in 03c791d0-2da4-42d0-8bc6-15a2154ad241 (Pinguioch **r** ysidales)
differs from above Ordo... - 09:28 AM task #7811: Import higher classifications
- Eolimna exists twice in 03c791d0-2da4-42d0-8bc6-15a2154ad241. Once as direct child of Naviculales (line 754), other t...
- 09:23 AM task #7811: Import higher classifications
- Also there is a new column subfam. As rank columns are hardcoded in import code all new columns need to be explicitly...
- 12:02 PM bug #8088: Open taxon node wizard issues
- Something went wrong in previous ticket #7794. The taxon itself should be selectable for both "New" and "Edit" mode. ...
02/14/2019
- 04:20 PM task #8091: Discuss Referencetype PrintSeries with respect to user needs of PhycoBank and taxonomic projects
- yes please
- 10:45 AM task #8091 (In Progress): Discuss Referencetype PrintSeries with respect to user needs of PhycoBank and taxonomic projects
- 10:45 AM task #8091: Discuss Referencetype PrintSeries with respect to user needs of PhycoBank and taxonomic projects
- ok, that I have a look on this first?
- 10:46 AM task #7918 (Closed): Revision of reference type specific properties
- As remaining issues are now in #8091 we can close this ticket.
- 10:42 AM bug #7998 (Closed): Store newly created Characters in selected vocabulary
- I think we can close this ticket now.
- 08:56 AM feature request #8030 (Closed): Cache updater service methods externalized and base class specific
- review completed, no issues found
- 08:55 AM bug #7874 (Closed): TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- looks like fixed by 100%
02/13/2019
- 06:52 PM bug #7874 (Resolved): TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- This should be fully fixed now with fixing #8030
- 01:45 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- You are right! Sorry for this bug in the assertion. Please correct it to :
~~~java
assertEquals(
"Expecting n... - 01:03 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- I do not understand this line in user tests:
~~~
assertEquals("Expecting nomenclaturalTitle to be set sin... - 06:51 PM feature request #8096 (Closed): Implement CacheUpdater as long running task with correct progress monitoring
- 06:41 PM feature request #8030 (Resolved): Cache updater service methods externalized and base class specific
- I think this is fixed now. Please review.
- 01:19 PM feature request #8030 (In Progress): Cache updater service methods externalized and base class specific
02/12/2019
- 03:57 PM bug #7998 (Resolved): Store newly created Characters in selected vocabulary
- 09:43 AM bug #7998: Store newly created Characters in selected vocabulary
- in 5.5.0.201902082215 in rem_conf_am I did not get the exception anymore.
- 12:38 AM bug #7998: Store newly created Characters in selected vocabulary
- Even with the latest version from 10pm the problem still exists.
- 02:03 PM feature request #8095 (New): response model for registration submission webservice
- reusing this ticket for related issue ...
- 01:59 PM feature request #8095 (Duplicate): response model for registration submission webservice
- duplicates #8086
- 01:57 PM feature request #8095 (New): response model for registration submission webservice
web service URLs:
POST: /registration/
PUT: /registration/{phycobankID-urlencoded}
The submission da...- 11:43 AM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- Adding testcase which reproduces the bug mentioned in comment 20 commit:b4be3c3e
`IdentifiableServiceBase.upda... - 11:17 AM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- all commits went into cdmlib-model and cdmlib-service, adapting the category.
- 11:33 AM bug #8051 (Closed): improve display of registration items lists
- Also a test case has been added, closing ticket
- 09:59 AM feature request #8094 (New): Show title for factual data view with referenced object
- For the factual data view we need a title which shows whether the view belongs to an object in focus and which object...
- 12:30 AM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Nomenclatural Code in DB prefs can not be deleted by setting to defaults. Something wrong with the deleting if value ...
- 12:27 AM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Restore defaults on local prefs restored the defaults stored in the predicates. One could also expect the current DB ...
- 12:20 AM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- On local prefs Name Details View page the "Restore Defaults" button seems to be enabled even if NDV does not allow ov...
- 12:18 AM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- ON DB prefs page Name Details View the taxon sec attributes are disabled if NDV is disabled but they are not grey. On...
- 12:10 AM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- With empty preferences when only the DistrEditor page is opened without any change afterwards the preferences for dis...
02/11/2019
- 11:53 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> Also it is not possible to delete this preference by setting it to default. If no vocabulary... - 03:07 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- now the setting of defaults is implemented for db and for local preferences.
For setting the term/vocabulary sele... - 11:10 PM bug #7998 (Feedback): Store newly created Characters in selected vocabulary
- With the latest version 5.5.0.201902111448 I get NoSuchMethodException which is strange because the method seems to b...
- 12:26 PM bug #7998 (Resolved): Store newly created Characters in selected vocabulary
- Andreas Müller wrote:
> Sorry as the comment list is long already I forgot to check the most important issue again w... - 10:43 PM feature request #6805 (Closed): Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- I also can't reproduce it anymore, so I think we can close the ticket, open again if it reappears.
- 08:29 AM feature request #6805: Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > Patrick Plitzner wrote:
> > > > A... - 08:21 AM feature request #6805: Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- Andreas Müller wrote:
> Now I get an error dialog "The connection to the server could not be established because the... - 07:06 PM bug #8051: improve display of registration items lists
- Review: correct including all types. Ticket can be closed.
- 06:35 PM bug #8051: improve display of registration items lists
- Problem solved!
- 05:21 PM bug #8051: improve display of registration items lists
- > Question: Why the holotype is missing? Is was databased as first entry in 100301.
this is in deed a bug which I ... - 04:20 PM bug #8051: improve display of registration items lists
Registration Id: http://phycobank.org/100301
Eucocconeis lacusbaicalensis Kulikovskiy & Lange-Bert. in Lake Ba...- 04:09 PM bug #8051: improve display of registration items lists
- For accessing the registration http://phycobank.org/100301 on the test server please use http://test.e-taxonomy.eu/d...
- 10:01 AM bug #8051: improve display of registration items lists
- Point 1
search for Scientific name = Planothidium
Search result resolved (see description)
Point 4
search for ... - 04:20 PM feature request #8093 (Closed): harmonize registrationId links and make tesing easier
- registrationId links are using in most cases the persistend identifier as `href` attribute. In one case the according...
- 03:07 PM feature request #8092 (Closed): set default for term and vocabulary selection preferences in selection wizard
- copied from #7849#note-75
See also #7849#note-76 and #8045 - 02:41 PM bug #8090: Reference editor: Label In proceedings in InProceedings missing
- done! Please review once server is up to date.
- 02:40 PM bug #8090 (Resolved): Reference editor: Label In proceedings in InProceedings missing
- Applied in changeset commit:cdm-vaadin|d096791b048af2ef4bd541f54cb9e2de2127b955.
- 02:38 PM bug #8090 (In Progress): Reference editor: Label In proceedings in InProceedings missing
- 10:25 AM bug #8090 (Closed): Reference editor: Label In proceedings in InProceedings missing
- Reference editor:
Label "In proceedings" in reference type "InProceedings" missing
(found reviewing #7918)
: Discuss Referencetype PrintSeries with respect to user needs of PhycoBank and taxonomic projects
- Referencetype = PrintSeries
Current status (Vaadin AND TaxEditor)
Example:
Title = Syllabus of plant families
...
02/09/2019
- 12:30 AM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> I did not check the ABCD stuf as I am not so familar. Can you please check yourself?
>
>... - 12:30 AM feature request #8089 (New): improve abcd preference page
- copied from #7849:
* Nomenclatural Code is missing a label there.
* The "New Provider" field is missing a l...
02/08/2019
- 11:41 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> Name Details View: "Secundum Ref Details and Secundum activated should have identation to ma... - 10:30 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also, if no preference exists yet (def... - 07:36 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also, if no preference exists yet (default) all vocabularies should... - 07:27 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also, if no preference exists yet (default) all vocabularies should... - 07:13 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> Also, if no preference exists yet (default) all vocabularies should be selected in the selec... - 06:53 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> The predicate "model.editor.NDV" always gets persisted once DB prefs are opened and saved ev... - 06:51 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> Critical: Name Details View: changes in DB prefs have no effect. Unselected controls are sti... - 06:51 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> After trying to set values to default values I could not open the preference page anymore:
... - 05:50 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- I did not check the ABCD stuf as I am not so familar. Can you please check yourself?
Only minor issues:
* Nom... - 05:37 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Critical: Name Details View: changes in DB prefs have no effect. Unselected controls are still shown in the view.
- 05:36 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Name Details View: "Secundum Ref Details and Secundum activated should have identation to make clear that they belong...
- 05:29 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Name Details View: by default when switching to "simplified" only NameCache, AuthorCache and Approbation is selected....
- 05:23 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Nomenclatural Code: Changing allow override does not set "Apply" to enabled.
- 05:21 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- The predicate "model.editor.NDV" always gets persisted once DB prefs are opened and saved even if NDV page was not op...
- 05:18 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> Common name areas: when opening the dialog it is always empty but should show the vocabulari... - 05:16 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- The "Restore Default" generally does not seem to work for DB Prefs. We should either disable/remove it or make it wor...
- 05:10 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Also for common names there is "Allow override" in the dialog and on the page. Preferred is on the page, but definete...
- 05:09 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Also, if no preference exists yet (default) all vocabularies should be selected in the selection dialog as this is si...
- 05:04 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Also it is not possible to delete this preference by setting it to default. If no vocabulary is selected an empty str...
- 04:58 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> Common name areas: when opening the dialog it is always empty but should show the vocabulari... - 04:41 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Common name areas: when opening the dialog it is always empty but should show the vocabularies selected before
- 04:36 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- This seems to be the reason:
~~~
java.lang.NullPointerException
at eu.etaxonomy.taxeditor.preference.ChecklistE... - 04:25 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Again I get "The currently displayed page contains invalid values" for a DB with no DBprefs defined and also no local...
- 04:24 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- The above is fixed with commits ed86aee4 ff but still should be reviewed by KL.
- 01:07 PM bug #7849 (Feedback): Improve DB Preferences handling and saving in TaxEditor
- After trying to set values to default values I could not open the preference page anymore:
~~~
login : admin
edi... - 10:22 AM bug #7849 (Resolved): Improve DB Preferences handling and saving in TaxEditor
- note-42 and note-43 are implemented, so I set the ticket to resolved.
- 07:01 PM feature request #7408 (New): [E+M] Support for preferred common names in data portal
- Upps, I just see that I did not give this back to you. It is an important ticket for E+M.
- 06:59 PM feature request #6805: Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Patrick Plitzner wrote:
> > > Andreas Müller wrote:
> > > > I... - 06:56 PM feature request #6805 (Feedback): Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- Now I get an error dialog "The connection to the server could not be established because the access was denied". This...
- 12:06 PM feature request #6805 (Resolved): Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- Andreas Müller wrote:
> When d&d a feature to a certain position now from term editor it is added to the end, not at... - 11:32 AM feature request #6805: Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > I only wonder if we need a dialog ... - 06:48 PM bug #7856 (Closed): Allow local override for distribution vocabularies
- Ok, I am not that deep into the code that I could really decide what the best is. I think we can close this ticket. G...
- 12:53 PM bug #7856 (Resolved): Allow local override for distribution vocabularies
- I keep it like it was implemented: when the string is null, the default value is used.
- 06:42 PM feature request #8062 (In Progress): Make default preferences deletable serverside
- 06:42 PM feature request #8062: Make default preferences deletable serverside
- The first implementation seems to work for all server side preferences using PreferencePredicates. This is only a fir...
- 06:36 PM bug #7794 (Closed): Update TaxonNodeWizard
- I moved all open issues to new ticket #8088
- 06:33 PM bug #8088 (Feedback): Open taxon node wizard issues
- Urgent: reenable taxon selection for reusing taxa (see #8088#note-3) => hotfix 5.5.1
Copied from #7794
* Classi... - 05:50 PM task #8087 (New): improve response model of registration/identifier/{registrationID}/status.json web service
- web service implemented for #7927 (commit:ebbad31)
response model currently:
~~~json
{
"String": "PUBLISH... - 05:23 PM feature request #8086 (New): registration submission endpoint implemented
- An REST service endpoint which receives initial submissions (POST) and updates (PUT).
The service receives data su... - 04:02 PM bug #7998 (Feedback): Store newly created Characters in selected vocabulary
- Sorry as the comment list is long already I forgot to check the most important issue again which is mentioned in #799...
- 03:37 PM bug #7998 (Closed): Store newly created Characters in selected vocabulary
- 03:36 PM bug #7998: Store newly created Characters in selected vocabulary
- Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > Andreas Müller wrote:
> > > > The... - 03:19 PM bug #7998 (Feedback): Store newly created Characters in selected vocabulary
- The primary task he has been fixed, all open issues are minor as can be solved later, so if you want we can close thi...
- 03:17 PM bug #7998: Store newly created Characters in selected vocabulary
- As mentioned before(?) I would put the character selection input more to the character part of the UI not to the top ...
- 03:14 PM bug #7998: Store newly created Characters in selected vocabulary
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > The text field is writable but sho... - 03:12 PM bug #7998: Store newly created Characters in selected vocabulary
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Patrick Plitzner wrote:
> > > Andreas Müller wrote:
> > > > N... - 12:25 PM bug #7998: Store newly created Characters in selected vocabulary
- Andreas Müller wrote:
> Patrick Plitzner wrote:
> > > Also we may want to increase the dialog a bit to make all dat... - 12:21 PM bug #7998 (Resolved): Store newly created Characters in selected vocabulary
- Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > Now, if you create a new vocabular... - 03:35 PM bug #6159 (Closed): improve distribution editor in TaxEditor
- I moved performance check for large datasets to #8047.
All other issues seem to be fixed or irrelevant since Distr... - 03:28 PM feature request #7912 (Closed): Enhance checkbox tree viewer
- Added remaining issues to #8054
- 11:33 AM feature request #8082 (New): cdm-server docker image allows running the cdm-server as non root user
- The cdmserver docker image sould accept a ENV variable `USER=${username}` to define the user under which the java pro...
- 11:11 AM task #8081 (Closed): Complete removal of redmine communication hub instances
- As decided in #7935 we are dropping the communication infrastructure build on base of redmine.
Once all code has ... - 10:14 AM bug #6952 (In Progress): Deleting terms does not get reflected in the UI and in the DB
- I will do that in the next release
- 09:48 AM feature request #8080: Improve menu item/tooltip text for "Open in bulk editor" when opening IdentifiableEntities
- For taxa we should always have the possibility to open in both bulk editors: taxon bulk editor and name bulk editor (...
- 09:42 AM feature request #8080 (New): Improve menu item/tooltip text for "Open in bulk editor" when opening IdentifiableEntities
- Currently, we use a generic command and handler to open IdentifiableEntities in th bulk editor. This way it is not po...
02/07/2019
- 10:21 PM bug #8073 (Closed): Registration page: show typified name for registrations covering typifications only
- 06:14 PM bug #8073: Registration page: show typified name for registrations covering typifications only
- A good and clear solution, thank you. Ticket can be closed.
- 10:58 AM bug #8073: Registration page: show typified name for registrations covering typifications only
- please review for example at http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration/http%...
- 10:57 AM bug #8073 (Resolved): Registration page: show typified name for registrations covering typifications only
- Applied in changeset commit:cdm-dataportal|2dce3b2a6df41b34dbf7fa800b76604c223ff9e8.
- 10:44 AM bug #8073 (Closed): Registration page: show typified name for registrations covering typifications only
- 1. show the typified name below the types section in grey and prefix it with "for "
2. adapt selenium test - 10:21 PM bug #8063 (Closed): multiple representations problem wirth collector being author of the registration citation
- 06:44 PM bug #8063: multiple representations problem wirth collector being author of the registration citation
- Checked with an analogous new example without any exception. Ticket can be closed.
- 10:21 PM feature request #7978 (Closed): registration search result ordered by identifier descending
- 06:47 PM feature request #7978: registration search result ordered by identifier descending
- Issue fully resolved. Ticket can be closed.
- 10:20 PM bug #7481 (Closed): ReferenceEditor: filter inReferences by applicable reference type
- 07:08 PM bug #7481: ReferenceEditor: filter inReferences by applicable reference type
- Section in Booksection is now possible. Ticket can be closed.
- 07:33 PM feature request #7902: Allow default values for PreferencePredicates
- As this is implemented on TaxEditor side I take it back to me for remaining issues.
- 06:44 PM bug #7998: Store newly created Characters in selected vocabulary
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Now, if you create a new vocabulary via "New Vocabulary" the de... - 06:41 PM bug #7998 (Feedback): Store newly created Characters in selected vocabulary
- Patrick Plitzner wrote:
> > Also we may want to increase the dialog a bit to make all data available without scrolli... - 12:14 PM bug #7998 (Resolved): Store newly created Characters in selected vocabulary
- > Also we may want to increase the dialog a bit to make all data available without scrolling. At least on Windows it ...
- 11:42 AM bug #7998: Store newly created Characters in selected vocabulary
- Andreas Müller wrote:
> Now, if you create a new vocabulary via "New Vocabulary" the default label is "empty represe... - 11:31 AM bug #7998: Store newly created Characters in selected vocabulary
- Andreas Müller wrote:
> Andreas Müller wrote:
> > The text field is writable but shouldn't. Selection is done only ... - 06:37 PM feature request #6805: Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > I only wonder if we need a dialog saying this is not possible. ... - 06:36 PM feature request #6805 (Feedback): Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- When d&d a feature to a certain position now from term editor it is added to the end, not at the correct position. D&...
- 02:26 PM feature request #6805: Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- Andreas Müller wrote:
> I only wonder if we need a dialog saying this is not possible. Can't we do the check on the ... - 01:36 PM feature request #6805 (Resolved): Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- 06:29 PM feature request #7761 (Closed): Invalid designations should be displayed like misapplied names in name editor
- There are still some related issues open (discussed via email). However, they are not inval. desig. specific and ther...
- 12:02 PM feature request #7761 (Resolved): Invalid designations should be displayed like misapplied names in name editor
- 11:00 AM feature request #7761: Invalid designations should be displayed like misapplied names in name editor
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > It would be nice to have a separate ic... - 06:08 PM bug #8041 (Closed): PatternSyntaxException in FeatureTreeSelectionDialog
- Also the related issue seem to be fixed all. I think we can close this ticket.
- 12:15 PM bug #8041 (Resolved): PatternSyntaxException in FeatureTreeSelectionDialog
- Already done ;)
- 12:01 PM bug #8041 (Feedback): PatternSyntaxException in FeatureTreeSelectionDialog
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Also the New Group dialog does not allow to enter a group name.... - 11:07 AM bug #8041 (Resolved): PatternSyntaxException in FeatureTreeSelectionDialog
- Andreas Müller wrote:
> There is a related issue. When creating a new Feature Tree in FeatureTree selection dialog "... - 09:55 AM bug #8041: PatternSyntaxException in FeatureTreeSelectionDialog
- Andreas Müller wrote:
> Also the New Group dialog does not allow to enter a group name. The dialog is empty.
> Also... - 09:53 AM bug #8041: PatternSyntaxException in FeatureTreeSelectionDialog
- Andreas Müller wrote:
> they all work as expected. I did not find any place where FeatureSelectionDialog is used. ... - 02:26 PM feature request #8078 (New): Improve DnD behavior
- * Test dropping several different items (CDM object, external object like files, etc.) into every viewer with DnD
* ... - 01:41 PM bug #8077 (New): recursive call of errorDialog.open caused by an SWTException
- this is a follow up ticket of #7668.
~~~ text
login : s.vonmering
editor version : 5.2.0
server : api.cyberta... - 01:39 PM bug #7668 (Closed): NPE when changing author
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > this.taxon != null && this.taxon.getNa... - 01:31 PM bug #7668: NPE when changing author
- Katja Luther wrote:
> Andreas Müller wrote:
> > this.taxon != null && this.taxon.getName().equals(cdmbase) should i... - 01:21 PM bug #7668: NPE when changing author
- Andreas Müller wrote:
> this.taxon != null && this.taxon.getName().equals(cdmbase) should include an additional this... - 01:35 PM bug #6952: Deleting terms does not get reflected in the UI and in the DB
- Katja, could you have a look on the delete issue as you have the most experience with delete handling.
- 01:29 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> I would expect if DB pref distribution status is set with allow override and local prefs are... - 01:16 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > now for specimen, name details and distribution editor the details ... - 12:51 PM task #7854 (Closed): Open issues in TaxDistributionEditor
- Ok, this now works. I add some minor issues for the "Source" buttons to the follow up ticket #8047.
- 12:36 PM feature request #8076 (Closed): implement test for typified name for registration page
- 12:36 PM feature request #8076 (Resolved): implement test for typified name for registration page
- Applied in changeset commit:cdm-dataportal|73703e189d61c3c5220e87f8b168d654bef08170.
- 12:25 PM feature request #8076 (Closed): implement test for typified name for registration page
- 11:20 AM bug #8075 (Closed): multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations
- In the Registration UI there are a couple of `
org.hibernate.HibernateException: A collection with cascade="all-dele... - 11:02 AM bug #8074 (Closed): Registration page has fatal error when registration identifier in url path is ivalid
- 11:02 AM bug #8074 (Resolved): Registration page has fatal error when registration identifier in url path is ivalid
- Applied in changeset commit:cdm-dataportal|e42db5b0b1abd1109644539a2f35434fd8af2805.
- 10:50 AM bug #8074 (Closed): Registration page has fatal error when registration identifier in url path is ivalid
- The registration page needs to handle invalid registration identifiers passed via the url to show a notification to t...
- 10:09 AM bug #8072 (Closed): Registration items in list view is using the wrong button icons for blocking regs and validation errors
- 10:08 AM bug #8072 (Resolved): Registration items in list view is using the wrong button icons for blocking regs and validation errors
- Applied in changeset commit:cdm-vaadin|1b3f0d8ced2179d187717eeeab1b9e69b2a21dc4.
- 09:30 AM bug #8072 (Closed): Registration items in list view is using the wrong button icons for blocking regs and validation errors
- List view:
this should be harmonized with the RegistrationWorkinsetEditor where the corre... - 09:56 AM bug #8069 (Closed): RegistrationUI: remove all messaging related code and message indicators from all views
- 09:38 AM bug #8069 (Resolved): RegistrationUI: remove all messaging related code and message indicators from all views
- Applied in changeset commit:cdm-vaadin|150c262407e0187fe037abea87cb0d8e56b1f03c.
02/06/2019
- 11:21 PM feature request #7761: Invalid designations should be displayed like misapplied names in name editor
- Katja Luther wrote:
> Andreas Müller wrote:
> > It would be nice to have a separate icon. MA stands for Misapplicat... - 11:19 PM feature request #7761 (Feedback): Invalid designations should be displayed like misapplied names in name editor
- yes, probably we can close this. Correct formatting will be done in #8055
- 10:54 PM bug #7668 (Feedback): NPE when changing author
- Also I wonder why " öffneten sich ganz viele Fehlerfenster". Has this to do with some kind of recursion? Can this be ...
- 10:51 PM bug #7668: NPE when changing author
- this.taxon != null && this.taxon.getName().equals(cdmbase) should include an additional this.taxon.getName() != null ...
- 10:42 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- I think everything else is fixed. Open issues note-33 (maybe needs discussion) and note-42 and note-43
- 10:06 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Katja Luther wrote:
> now for specimen, name details and distribution editor the details are only disabled not invis... - 09:57 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- I would expect if DB pref distribution status is set with allow override and local prefs are not yet set that when op...
- 03:10 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- now for specimen, name details and distribution editor the details are only disabled not invisible when the more glob...
- 02:38 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> Distribution Editor page local prefs: "override" is missing in distribution status selection... - 02:31 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> Distribution Editor page: "Show rank in..." and "Sort areas by order ..." are local enabled ... - 12:54 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Distribution Editor page local prefs: "override" is missing in distribution status selection, seems to be correct in ...
- 12:53 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Distribution Editor page: "Show rank in..." and "Sort areas by order ..." are local enabled even if allow override is...
- 12:48 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> On Specimen page, when "Show specimen related views" is unchecked but allow override = true ... - 12:42 PM bug #7849 (Feedback): Improve DB Preferences handling and saving in TaxEditor
- On Specimen page, when "Show specimen related views" is unchecked but allow override = true the specific preferences ...
- 09:11 PM bug #8041: PatternSyntaxException in FeatureTreeSelectionDialog
- I tested
FeatureTreeSelectionDialog
TermVocabularySelectionDialog
GrantedAuthoritySelectionDialog
GroupSelectio... - 09:08 PM bug #8041: PatternSyntaxException in FeatureTreeSelectionDialog
- Also the New Group dialog does not allow to enter a group name. The dialog is empty.
Also in New User dialog it is n... - 08:46 PM bug #8041 (Feedback): PatternSyntaxException in FeatureTreeSelectionDialog
- There is a related issue. When creating a new Feature Tree in FeatureTree selection dialog "New Feature Tree" the cre...
- 01:18 PM bug #8041 (Resolved): PatternSyntaxException in FeatureTreeSelectionDialog
- I tested all changed selection dialogs and experienced no exceptions.
- 01:13 PM bug #8041: PatternSyntaxException in FeatureTreeSelectionDialog
- I changed the callService() method for
* FeatureSelectionDialog
* FeatureTreeSelectionDialog
* TermVoc... - 12:47 PM bug #8041: PatternSyntaxException in FeatureTreeSelectionDialog
- The classes that do not directly invoke a service method with the search pattern are:
* FeatureSelectionDialog -> ... - 07:32 PM feature request #7920: Possibility to define area specific status selection
- Andreas Kohlbecker wrote:
> Is this feature request really only specific to the taxeditor?
>
> To me it sounds l... - 11:52 AM feature request #7920: Possibility to define area specific status selection
- Is this feature request really only specific to the taxeditor?
To me it sounds like a preference for a project in... - 06:33 PM bug #8069 (In Progress): RegistrationUI: remove all messaging related code and message indicators from all views
- 03:10 PM bug #8069 (Closed): RegistrationUI: remove all messaging related code and message indicators from all views
- The message indicators are no longer needed since we decided not to use any special messaging system but to rely on e...
- 06:24 PM bug #8071 (Closed): ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity
- 06:24 PM bug #8071 (Resolved): ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity
- Applied in changeset commit:cdm-vaadin|8f035267e2a1b848dfd7902e20c0af8e3258d26e.
- 06:18 PM bug #8071 (In Progress): ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity
- 03:22 PM bug #8071 (Closed): ReferencePopupEditor: saving a newly created inreference is not refreshing the inrefernce field with the new entity
- 06:17 PM feature request #8070 (Closed): ReferencePopupEditor: apply sensible reference type pre-set for in references
- 06:17 PM feature request #8070 (Resolved): ReferencePopupEditor: apply sensible reference type pre-set for in references
- Applied in changeset commit:cdm-vaadin|5abdc0164b652ca89b2efa69f7952fbbd18aea4a.
- 03:21 PM feature request #8070 (Closed): ReferencePopupEditor: apply sensible reference type pre-set for in references
- when clicking the new button in the reference editor the poup editor for the in reference should have the valid refer...
- 03:17 PM bug #7856: Allow local override for distribution vocabularies
- No the exception is not caught as long as I can see. But maybe we should handle it the same. Then it is consistent to...
- 12:09 PM bug #7856: Allow local override for distribution vocabularies
- But doesn't Assert throw an exception if one of them is null? This is something else then nothing. Or is the exceptio...
- 11:52 AM bug #7856: Allow local override for distribution vocabularies
- I also had a look how it is handled in eclipse preferenceStore and there a null value is handled like nothing. So not...
- 11:10 AM bug #7856: Allow local override for distribution vocabularies
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Katja Luther wrote:
> > > > Andreas M... - 11:08 AM bug #7856 (Feedback): Allow local override for distribution vocabularies
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > But what ... - 10:55 AM bug #7856: Allow local override for distribution vocabularies
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > But what if the value is null for some... - 10:46 AM bug #7856: Allow local override for distribution vocabularies
- Katja Luther wrote:
> Andreas Müller wrote:
> > But what if the value is null for some reason. Can this happen? Sho... - 02:56 PM bug #8065: HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table
- This seems not to be related to the session time out as assumed originally
- 02:54 PM feature request #8048 (Closed): Selenium test for Registration page
- Tests implemented and SUCCESSful
- 02:53 PM bug #8068 (New): Selenium test for Reference page
- Test for:
* nomeclatural acts
* #7907 - 02:48 PM bug #8066 (Closed): CdmUserHelper.createAuthorityFor() causes flush of pending transactions
- 01:10 PM bug #8066 (Resolved): CdmUserHelper.createAuthorityFor() causes flush of pending transactions
- Applied in changeset commit:cdmlib|4c2a3c2cc8e7583d613dd5e24afc5fdda3442816.
- 01:09 PM bug #8066: CdmUserHelper.createAuthorityFor() causes flush of pending transactions
- Using the PROPAGATION_REQUIRES_NEW turned out to be in-appropriate. It was causing LazyInitializationExceptions, the ...
- 12:37 PM bug #8066: CdmUserHelper.createAuthorityFor() causes flush of pending transactions
- A forced flush before changing the authentication should help in this case. Other options are to
* do the authori... - 12:32 PM bug #8066 (Closed): CdmUserHelper.createAuthorityFor() causes flush of pending transactions
- This was observed when testing for regressions related to #8039, the following steps where done in the registration U...
- 02:06 PM feature request #6805: Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
- Disallow dropping feature nodes above/below feature trees
- 01:23 PM feature request #7887 (Closed): Use DTOs in term editor
- Andreas Müller wrote:
> Are there still open issues that need to be handled in separate tickets? I remember you said... - 01:21 PM feature request #8067 (New): Remove immediate saving after operations from term editor
- Copied from #7887
The term editor should behave like the other editors and have long running sessions.
So that ... - 11:10 AM bug #8063: multiple representations problem wirth collector being author of the registration citation
- Should be fully solved but a second checking this would be great.
Please review once the server is updated. - 11:09 AM bug #8063 (Resolved): multiple representations problem wirth collector being author of the registration citation
- Applied in changeset commit:cdm-vaadin|fdce845e68f179442cec658779f8c8e5319d2ee7.
- 10:43 AM task #7854 (Resolved): Open issues in TaxDistributionEditor
- 10:14 AM task #7854: Open issues in TaxDistributionEditor
- Andreas Müller wrote:
> Not all of them are moved. Some are still open here
>
> note-73 last question
if the a... - 10:42 AM feature request #7283 (Resolved): Improvements for alternative identifier search
- 10:30 AM feature request #7283: Improvements for alternative identifier search
- Andreas Müller wrote:
> Do I understand correctly that this functionality is only available for certain references s...
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