Project

General

Profile

Activity

From 11/01/2018 to 11/30/2018

11/30/2018

05:02 PM bug #7933 (Closed): Adding a new Term to the "Country" vocabulary leads to corrupt data
After adding a new term to the "Country" vocabulary the cdm server throws an exception during startup Patrick Plitzner
04:14 PM feature request #7847 (Closed): Use separate column for row state instead of symbol in titleCache column
Andreas Müller
02:34 PM feature request #7847: Use separate column for row state instead of symbol in titleCache column
If it is not possible to put the symbol beside the text we should better leave it where it is. Andreas Müller
01:46 PM feature request #7847: Use separate column for row state instead of symbol in titleCache column
The icon can be put in any corner or even centered. But, at least for now I haven't found an easy solution, if we put... Patrick Plitzner
01:19 PM feature request #7847: Use separate column for row state instead of symbol in titleCache column
I think we can will with this implementation though I still think that a separate column would be even better.
Is...
Andreas Müller
03:13 PM bug #4821: Changing order of terms not possible
review ping Patrick Plitzner
03:12 PM feature request #5474 (Resolved): TermEditor menu should be more structured
@Andreas: Can you please check if this is still open? For example, "Others" is now translated when language is switched. Patrick Plitzner
02:55 PM bug #5926 (Worksforme): Update labels in TermEditor for Vocabularies
This has been fixed in the meantime. Patrick Plitzner
02:52 PM bug #6231 (Worksforme): Correctly handle failed term deletions in the editor
This has been fixed in the meantime. A popup will show what entities are still references when deletion is impossible... Patrick Plitzner
02:48 PM bug #6765 (Worksforme): NonUnique exception when dragging and dropping a lot of terms in the term editor
This seems to be fixed by implementing DTOs in term editor #7887 Patrick Plitzner
01:23 PM bug #6951 (Resolved): Drag and drop does not update term hierarchy in the UI
This issue is fixed with the implementation of DTOs in the term editor #7887 Patrick Plitzner
01:20 PM bug #6952 (Resolved): Deleting terms does not get reflected in the UI and in the DB
This issue is fixed with the implementation of DTOs in the term editor #7887 Patrick Plitzner
01:17 PM bug #7649: Term editor loads/saves extremely slow
true, I was just cleaning up tickets and there was actually no work done on this. But it makes sense to regard it as ... Patrick Plitzner
01:13 PM bug #7649: Term editor loads/saves extremely slow
why did you remove target version. It is a bug fix and needs to be reported for 5.5 I think. Andreas Müller
11:15 AM bug #7649 (Feedback): Term editor loads/saves extremely slow
This should be fixed with the implementation of using DTOs in #7887
@Katja: Can you close this once #7887 is revie...
Patrick Plitzner
12:06 PM bug #7367 (Resolved): Deleting a term in the term editor does not update the UI
Applied in changeset commit:cdmlib|4f93bc356e3a3ebd6f427310a451ab30ea89cc62. Patrick Plitzner
11:59 AM bug #7367 (In Progress): Deleting a term in the term editor does not update the UI
Patrick Plitzner
11:19 AM bug #7634: Timeout/Performance problems in Taxeditor
The context menu performance should have improved with fixing #7792 Patrick Plitzner
11:15 AM feature request #7887: Use DTOs in term editor
@Katja: Please also check and close #7649 when this is reviewed. Patrick Plitzner
11:11 AM bug #7850: Further problems with term editor
@Andreas M.: Can you please check if this is still an issue? Patrick Plitzner
08:55 AM feature request #6805 (Resolved): Implement drag and drop from Term Editor (Feature) to FeatureTreeEditor
Patrick Plitzner

11/29/2018

01:08 PM feature request #7932: Implement subject resolver for CdmPreferences
For now we implement solution 2. Andreas Müller
01:07 PM feature request #7932 (Resolved): Implement subject resolver for CdmPreferences
Finding the best matching preference for preferences with same predicates but differing subjects is currently not yet... Andreas Müller
11:50 AM feature request #7847: Use separate column for row state instead of symbol in titleCache column
Patrick Plitzner wrote:
> It would also be possible to show the icon in the first column no matter what property is ...
Patrick Plitzner
11:10 AM feature request #7847 (Feedback): Use separate column for row state instead of symbol in titleCache column
It would also be possible to show the icon in the first column no matter what property is shown in the first column. ... Patrick Plitzner

11/28/2018

02:06 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
After discussion with Henning DOI should not be available for journals and print series.
And I guess also for pers...
Andreas Müller
01:32 PM bug #7930: Remove DOI from journals, print series and person communications
Please review and implement accordingly in TaxEditor (remove DOI from these 3 reference types if not yet done). Andreas Müller
01:30 PM bug #7930 (Resolved): Remove DOI from journals, print series and person communications
Applied in changeset commit:cdmlib|8bda418b4eea02e8a41111630a811719ab4ecc2f. Andreas Müller
01:02 PM bug #7930 (Closed): Remove DOI from journals, print series and person communications
Talking with WHK about DOIs we decided that journals and print series do not have DOIs. Therefore these should be rem... Andreas Müller
01:03 PM feature request #7931 (Resolved): add symbol2 to term detailsview
Katja Luther
01:02 PM feature request #7931 (Closed): add symbol2 to term detailsview
Katja Luther

11/27/2018

03:42 PM task #7921 (Resolved): Create database for Caucasus distribution editing
Andreas Müller
03:28 PM bug #7924: LazyInitializationException (LIE) in taxon/{uuid}/synonymy.json when used with subtree filter
seems to be fixed correctly. I tested on test.E+M with http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_datap... Andreas Müller
02:35 PM bug #7924 (Resolved): LazyInitializationException (LIE) in taxon/{uuid}/synonymy.json when used with subtree filter
Applied in changeset commit:cdmlib|387f1cf1049dcda4829cbc80f230ba35de8eaceb. Andreas Müller
02:09 PM bug #7929 (Closed): after delete of not persisted object in bulkeditor the object is still in bulkeditor list
when deleting a not persisted objekt in bulk editor it is not removed from the list, this is because of the setting o... Katja Luther
12:05 PM feature request #7928 (New): Name type should not be identical to typified name
It is possible to typify a for example a genus name with itself.
There might be a warning, if typified and typifyin...
Wolf-Henning Kusber

11/26/2018

07:57 PM feature request #7927 (Closed): Registration not found, Portal handling registrations in preparation
Problem: When http-Identifier are inserted in a manuscript, authors or editors or copy editors are checking the link.... Wolf-Henning Kusber

11/23/2018

06:52 PM feature request #6869: Reference editor: Advanced mode only available for curators
submitter: caches = readonly
Author team cache can be altered by authorised submitters until formatting problems ("e...
Wolf-Henning Kusber
04:37 PM feature request #6869 (Feedback): Reference editor: Advanced mode only available for curators
From the point of view that titlecaches of the authorteams are often not satisfying this request makes not much sens... Andreas Kohlbecker
06:44 PM bug #7690: Adapt available typedesignation editors to name rank
corrected correctly:
rank <= genus & rank > species: NameTypeDesignationEditor + SpecimenTypeDesignationEditor
Wolf-Henning Kusber
06:41 PM bug #7690 (Feedback): Adapt available typedesignation editors to name rank
@Henning:
I think this is a typo:
> rank **>=** genus & rank > species: NameTypeDesignationEditor + SpecimenTyp...
Andreas Kohlbecker
04:58 PM bug #7690 (In Progress): Adapt available typedesignation editors to name rank
Andreas Kohlbecker
04:27 PM bug #7881: reference selection combobox broken after error in ...
close this issue if tit does not occur again in 15 days Andreas Kohlbecker
02:22 PM feature request #7217 (Closed): SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
Test (Test system) 2018-11-23
Error radius shown
Normal Geo references converted
Forbidden entries result in an er...
Wolf-Henning Kusber
02:21 PM feature request #7642 (Rejected): PhycoBank Anzeige und Zugreifbarkeit von Basionymen in Vaadin (zur Diskussion)
Andreas Kohlbecker
02:19 PM feature request #7642: PhycoBank Anzeige und Zugreifbarkeit von Basionymen in Vaadin (zur Diskussion)
Das Fehlen des Basionyms im Workingset der zugehörigen nomenklatorischen Referenz ist dadurch zu erklären, dass das a... Andreas Kohlbecker
02:14 PM feature request #7926 (New): for polytomous key nodes a move up/down alternative method should be available
creating a new node creates always an alternative linked to the next node and the second alternative is placed behind... Katja Luther
12:19 PM bug #7925 (Closed): AbstractPopupEditor: exception handling in save method is incomplete
Andreas Kohlbecker
12:14 PM bug #7925 (Resolved): AbstractPopupEditor: exception handling in save method is incomplete
Applied in changeset commit:cdm-vaadin|73a2fd4785286f5eccabd56d4f1c08f67305a375. Andreas Kohlbecker
11:28 AM bug #7925 (Closed): AbstractPopupEditor: exception handling in save method is incomplete
the exception handling in the AbstractPopupEditor.save() method does not reliably find `FieldGroupInvalidValueExcepti... Andreas Kohlbecker
10:46 AM feature request #7923 (Resolved): Add context menu and drag'n'drop to CharacterEditor
Patrick Plitzner

11/22/2018

05:42 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
Nach wie vor internal error bei
http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/a0ddaa05-...
Wolf-Henning Kusber
01:49 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
Test server was not yet build, please try again. Andreas Kohlbecker
01:40 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
Fehler reproduzierbar, gleiche Fehlermeldung. Wolf-Henning Kusber
01:14 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
Problem solved please test again Andreas Kohlbecker
02:56 PM bug #7924 (Closed): LazyInitializationException (LIE) in taxon/{uuid}/synonymy.json when used with subtree filter

http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/d7bb858b-d8e0-4f9a-8a47-081d1cb740e9/synonymy.json?s...
Andreas Kohlbecker
02:23 PM feature request #7923 (Closed): Add context menu and drag'n'drop to CharacterEditor
Add all context functionality to character editor like in feature tree editor.
Add support for creating characters...
Patrick Plitzner
12:08 PM feature request #7875 (Closed): Add multiple area selection to descriptive data set editor
Patrick Plitzner
12:06 PM feature request #7868 (Closed): Allow creating a new vocabulary in vocabulary selection dialog
Patrick Plitzner
12:05 PM feature request #7806 (Closed): GfBio Term Search issues
Patrick Plitzner
12:02 PM feature request #7869 (Closed): Run gfbio term service requests as background tasks
Patrick Plitzner
11:33 AM feature request #7922: Add other possibilities to save distributions created with the distribution editor
It should be possible to save distributions created by the distribution editor in explicit descriptions.
This feat...
Katja Luther
11:29 AM feature request #7922 (New): Add other possibilities to save distributions created with the distribution editor
Katja Luther
11:08 AM task #7921: Create database for Caucasus distribution editing
Standard v_cdm_exp_namesAll:
~~~ sql
SELECT NameId, NomRefFk, NomRefDetailFk
FROM dbo.Name
WH...
Andreas Müller
10:56 AM task #7921: Create database for Caucasus distribution editing
Standard v_cdm_exp_taxaDirect
~~~ sql
SELECT RIdentifier, PTNameFk, PTRefFk, 0 AS MA
FROM dbo....
Andreas Müller
10:55 AM task #7921 (Closed): Create database for Caucasus distribution editing
The following taxonomic groups should be included:
Caryophyllales: E9ADC31F-BF5B-4868-8D8E-D870DC848663 / 533921...
Andreas Müller
10:38 AM feature request #7920: Possibility to define area specific status selection
Changed Assignee as I will try to implement the algorithm class first. Andreas Müller
10:38 AM feature request #7920: Possibility to define area specific status selection
Result of discussion: we use the subject part of the CdmPreferences. By defining something like /taxeditor/NamedArea:... Andreas Müller
09:32 AM feature request #7920 (Feedback): Possibility to define area specific status selection
We need a possibility to define status selection lists depending on the area. For example in euro + med the status li... Katja Luther

11/21/2018

08:14 PM discussion #7917: Revise ReferenceSystemTerms
I did some further investigation on reference systems and their importance on geolocations. I adding these informatio... Andreas Kohlbecker
11:18 AM discussion #7917: Revise ReferenceSystemTerms
The entries are mixing Reference class and the method for finding the correct value. The method might be of interest,... Wolf-Henning Kusber
08:31 AM discussion #7917: Revise ReferenceSystemTerms
I discovered that adding 'gazetteer' was an explicit requirement which was handled in #2374. What was the purpose, us... Andreas Kohlbecker
04:51 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
completed, please review vaadin reference editor Andreas Kohlbecker
11:34 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
I now moved the model discussion to #7918.
Andreas Kohlbecker
11:24 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
> InProceedings - Series: Correct, that this is not needed.
> Also it is not available in the IInProceedings inter...
Andreas Kohlbecker
08:15 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I think it is also worth mentioning the class `eu.etaxonomy.c...
Andreas Kohlbecker
07:50 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The notes added in comment 19 should go into a separate taxed...
Andreas Kohlbecker
04:17 PM task #7918: Revision of reference type specific properties
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > [copied from #7223#note-29 , Andreas Kohlbecker]
> >
> > >...
Andreas Kohlbecker
01:16 PM task #7918: Revision of reference type specific properties
Andreas Kohlbecker wrote:
> [copied from #7223#note-29 , Andreas Kohlbecker]
>
> > InProceedings - Series: Correc...
Andreas Müller
11:33 AM task #7918: Revision of reference type specific properties
[copied from #7223#note-29 , Andreas Kohlbecker]
> InProceedings - Series: Correct, that this is not needed.
> ...
Andreas Kohlbecker
11:32 AM task #7918: Revision of reference type specific properties
[copied from #7223#note-28 , Andreas Kohlbecker]
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I think i...
Andreas Kohlbecker
11:31 AM task #7918: Revision of reference type specific properties
[copied from #7223#note-26 , Andreas Müller]
Andreas Kohlbecker wrote:
> I think it is also worth mentioning the ...
Andreas Kohlbecker
11:30 AM task #7918: Revision of reference type specific properties
[partially copied from #7223#note-12 , Andreas Kohlbecker]
I think it is also worth mentioning the class `eu.etaxo...
Andreas Kohlbecker
11:29 AM task #7918: Revision of reference type specific properties
[copied from #7223#note-19 , Andreas Müller]
Some notes on the above:
DOIs: are available but just not implem...
Andreas Kohlbecker
11:27 AM task #7918 (Closed): Revision of reference type specific properties
Reference Editor of Vaadin (2018-11-02) in square brackets: Differences in the TaxEditor
*Article*
Date published...
Andreas Kohlbecker
04:03 PM feature request #7912 (Resolved): Enhance checkbox tree viewer
Patrick Plitzner
01:51 PM feature request #7919 (Closed): GeoLocationField uses OpenTopoMap
Andreas Kohlbecker
01:51 PM feature request #7919 (Resolved): GeoLocationField uses OpenTopoMap
Applied in changeset commit:cdm-vaadin|fc2887de3c858ccda77df51d2c5196cf206e86d7. Andreas Kohlbecker
12:38 PM feature request #7919 (Closed): GeoLocationField uses OpenTopoMap
Use https://opentopomap.org/ for the map widget in the GeoLocationField Andreas Kohlbecker
11:07 AM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
Fehler im Testsystem reproduzierbar. Wolf-Henning Kusber
11:01 AM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
Parser is workin fine, except of "forbidden entries"
50°61'15"N seems to produce not only a warn "Latitude !" in r...
Wolf-Henning Kusber
08:57 AM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
please review Andreas Kohlbecker
10:46 AM bug #7480: ReferenceEditor misses institution, organization and school fields
Im Prinzip funktioniert es.
Habe unter "School" ein Institut eingebeben, bei "part of" die Freie Universität Berlin....
Wolf-Henning Kusber
09:55 AM bug #7833: submitters can access see any registration in any RegistrationWorkingSet
RegistrationWorkingSet Unpublished references must only be accessible for submitters which have UPDATE permission | w... Wolf-Henning Kusber
08:54 AM feature request #7218: SpecimenTypedesignationsWorkingsetEditor: support for Reference system
please review Andreas Kohlbecker
08:52 AM feature request #7218 (Resolved): SpecimenTypedesignationsWorkingsetEditor: support for Reference system
Applied in changeset commit:cdm-vaadin|9e57a9b35bf0f2cc2439cd0b3ad1630111efc211. Andreas Kohlbecker
08:49 AM feature request #7218 (In Progress): SpecimenTypedesignationsWorkingsetEditor: support for Reference system
Andreas Kohlbecker

11/20/2018

06:41 PM discussion #7917 (Feedback): Revise ReferenceSystemTerms
Hi Andreas, please commment Andreas Kohlbecker
06:41 PM discussion #7917 (In Progress): Revise ReferenceSystemTerms
A spatial reference system (SRS) or coordinate reference system (CRS) is a coordinate-based local, regional or global... Andreas Kohlbecker
06:13 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Andreas Kohlbecker wrote:
> I think it is also worth mentioning the class `eu.etaxonomy.cdm.model.reference.Referenc...
Andreas Müller
06:01 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Andreas Kohlbecker wrote:
> The notes added in comment 19 should go into a separate taxeditor ticket since this tick...
Andreas Müller
05:34 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Maybe we should also remove DOI from journal and print series. Andreas Müller
03:57 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
The notes added in comment 19 should go into a separate taxeditor ticket since this ticket here is mainly focused on ... Andreas Kohlbecker
02:55 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Some notes on the above:
DOIs: are available but just not implemented yet #3767
Date published for Journals a...
Andreas Müller
06:10 PM bug #7916 (Closed): SpecimenTypeDesignationEditor: Map shows error radius
Andreas Kohlbecker
05:52 PM bug #7916 (Resolved): SpecimenTypeDesignationEditor: Map shows error radius
Applied in changeset commit:cdm-vaadin|d8487d07970641cf88b82276829e5c88301df9cb. Andreas Kohlbecker
05:49 PM bug #7916 (Closed): SpecimenTypeDesignationEditor: Map shows error radius
The map in the `GeoLocationField` should show the error radius Andreas Kohlbecker
05:24 PM bug #7828 (In Progress): Remove date published from journals in E+M
Andreas Müller
05:17 PM bug #7828 (Duplicate): Remove date published from journals in E+M
Andreas Müller
05:20 PM bug #7913 (Resolved): Remove authorship from IJournal and IPrintSeries
Andreas Müller
05:17 PM bug #7913 (Duplicate): Remove authorship from IJournal and IPrintSeries
Andreas Müller
05:16 PM bug #7913 (Resolved): Remove authorship from IJournal and IPrintSeries
Applied in changeset commit:cdmlib|67aae1661ccedd224c4e57400eeb012d0e06f8fb. Andreas Müller
03:19 PM bug #7913 (Closed): Remove authorship from IJournal and IPrintSeries
Authorship should be removed from journals and print series. Even if they share a common author the authorship should... Andreas Müller
05:17 PM bug #7839 (Duplicate): IJournal should not have author, date published etc.
Andreas Müller
05:16 PM bug #7915 (Resolved): Remove date published from journals and print series
Applied in changeset commit:cdmlib|f2c63453989c2752a87d078b61049b2806fd0097. Andreas Müller
05:09 PM bug #7915 (Closed): Remove date published from journals and print series
Journals (and also print series) do not have a single publication date but only a period in which single volumes have... Andreas Müller
05:16 PM feature request #7914 (Resolved): Add ISBN to IProceedings
Applied in changeset commit:cdmlib|3d01e669fc0a9d6846b879af96935d028d008c26. Andreas Müller
03:29 PM feature request #7914: Add ISBN to IProceedings
sorry, this is for proceedings, not in-proceedings. Andreas Müller
03:26 PM feature request #7914 (Closed): Add ISBN to IProceedings
Proceedings are books though they do not implement the IBook interface as they do not have editions.
ISBN needs to...
Andreas Müller
04:57 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
Parsing now works perfectly, the GeoLocationField needs some changes thought ... Andreas Kohlbecker
11:27 AM task #7636 (Closed): remove obsolete code which dissociates removed TypeDesignations from Registrations
This code has already been removed commit:cdm-vaadin|9dab909 Andreas Kohlbecker
09:31 AM bug #7631 (Worksforme): PhycoBank Vaadin: Institution selected, edit with Collection code fails
This issue has been solved meanwhile. Andreas Kohlbecker
09:18 AM feature request #7655 (Duplicate): References Editor: book section offers title field
duplicate of #7223 Andreas Kohlbecker
09:14 AM bug #7721 (Rejected): Contraint Violation Exception on saving Reference Popup Editor
This issue is 3 months old. The cause which lead to this aftereffect has most probably been fixed meanwhile. Andreas Kohlbecker
09:10 AM bug #7480 (Closed): ReferenceEditor misses institution, organization and school fields
Done! Andreas Kohlbecker
09:09 AM bug #7480 (Resolved): ReferenceEditor misses institution, organization and school fields
Applied in changeset commit:cdm-vaadin|c6db362dfc15d063b5111b04e0a4c0e683445e75. Andreas Kohlbecker

11/19/2018

05:56 PM task #7758: Manual cleanup after E+M import
Make Strid & Kit Tan a BookSection
~~~
in Strid & Kit Tan, Mount. Fl. Greece 1: 570. 1986 | Euphorbia myrsinites ...
Andreas Müller
04:55 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
except of the institution, organization and school fields which are handled in #7480 all issues named in this ticket ... Andreas Kohlbecker
12:59 PM feature request #7217 (Resolved): SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
I added double apostrophe as marker for seconds. This fixes the tests.
I also replaced the UTF8 constants by links...
Andreas Müller
12:09 PM feature request #7912 (Closed): Enhance checkbox tree viewer
Implement buttons:
* to (de-)select all children
* select all children recursively or only direct children
Vis...
Patrick Plitzner
10:33 AM feature request #7886: Divide local preferences to db dependend local preferences
ok Andreas Müller
10:09 AM feature request #7886 (Resolved): Divide local preferences to db dependend local preferences
Andreas Müller wrote:
> is the resolved or are there open issues?
>
> Maybe we need to clearly define somewhere w...
Katja Luther
10:32 AM bug #7911: Changing areas in Distribution Editor yields to wrong column labels
can you please link to other Distribution Editor tickets, especially the one for open issues. Andreas Müller
10:30 AM bug #7639 (Resolved): SpecimenTypeDesignationEditor: Altitude not saved and displayed properly
Problem solved, please review. Andreas Kohlbecker
10:29 AM feature request #7600 (Resolved): public setters for entity collections
Reopen for doing review. Andreas Müller

11/16/2018

03:31 PM bug #7911 (Resolved): Changing areas in Distribution Editor yields to wrong column labels
please review. Katja Luther
03:30 PM bug #7911: Changing areas in Distribution Editor yields to wrong column labels
this is fixed in hotfix 5.4.3 and with commit Revision fecf5fd5 Katja Luther
03:26 PM bug #7911 (Worksforme): Changing areas in Distribution Editor yields to wrong column labels
when changing the areas displayed in distribution editor yields to wrong order of column labels. Katja Luther
01:27 PM feature request #7600 (Closed): public setters for entity collections
I think it is save now to close this issue. Andreas Kohlbecker
01:15 PM bug #7910 (Resolved): TeamOrPersonField: readonly exception on bindig data
Hallo Henning,
Das TeamOrPersonField sollte nun korrekt funktionieren. Bitte teste verschiedene Varianten durch.
Andreas Kohlbecker
01:06 PM bug #7910: TeamOrPersonField: readonly exception on bindig data
I implemented the `EntityCollectionSetterAdapter` (#7600) in order to provide a public setter method for teammembers.... Andreas Kohlbecker

11/15/2018

04:26 PM feature request #7600: public setters for entity collections
Another serialization issue:
~~~
login : admin
editor version : 5.5.0.qualifier
server : localhost (localhost-d...
Andreas Kohlbecker
04:10 PM feature request #7600 (In Progress): public setters for entity collections
EntityCollectionSetterAdapter is causing problems in the http-invoker during serialization:
~~~
login : admin
ed...
Andreas Kohlbecker
02:44 PM feature request #7600 (Feedback): public setters for entity collections
The `EntityCollectionSetterAdapter` is implemented and being used for `Team.teamMembers` and `AnnotatableEntity.annot... Andreas Kohlbecker
01:56 PM feature request #7600 (In Progress): public setters for entity collections
Andreas Kohlbecker
02:54 PM bug #6807 (Rejected): Deleting a FeatureNode is persisted although the editor is set to dirty
with fixing #6806 the saving strategy has changed and the editor is only set to dirty when editing in the details vie... Patrick Plitzner
02:52 PM feature request #6806 (Resolved): Add context menu to FeatureTreeEditor
Patrick Plitzner
02:32 PM feature request #6806 (In Progress): Add context menu to FeatureTreeEditor
Patrick Plitzner
09:38 AM bug #7910: TeamOrPersonField: readonly exception on bindig data
The preferred solution to this is making the `setTeamMembers()` in Team `public`
Are you ok with this Andreas Mül...
Andreas Kohlbecker
08:45 AM bug #7910 (In Progress): TeamOrPersonField: readonly exception on bindig data
The root of this problem is the Team class in which the setter for members is `protected`. This causes the `PropertyD... Andreas Kohlbecker
08:25 AM bug #7910 (Closed): TeamOrPersonField: readonly exception on bindig data

~~~
Caused by: com.vaadin.data.Buffered$SourceException
at com.vaadin.ui.AbstractField.setPropertyDataSource(A...
Andreas Kohlbecker

11/14/2018

06:37 PM feature request #7899: enable orthographic name correction in Vaadin
Im Vergleich zu meinem Vorschlag habe ich zu Mastogloia wulffii im TaxEditor Mastogloia wulffiae neu angelegt, diesel... Wolf-Henning Kusber
02:57 PM bug #7908 (Closed): Redmine communication hub slows down RegistrationWorkingSets
As stated in #7785 the checking for messaged in the Redmine instance serving as communication hub slows down the disp... Andreas Kohlbecker
02:52 PM task #7785 (Closed): CdmUserHelper caches permission information
Andreas Kohlbecker
02:51 PM task #7785: CdmUserHelper caches permission information
The CachingCdmUserHelper effectively brings a performance boost of ~2 seconds for the big working set "Kulikovskiy, M... Andreas Kohlbecker
11:13 AM bug #7907 (Closed): Annotations in Reference page do not respect the annotation settings
... habe gerade gesehen, dass im Production Portal unsere internal notes angezeigt werden.
https://www.phycobank....
Andreas Kohlbecker

11/13/2018

06:21 PM feature request #7906 (Closed): AbstractPopupEditor: Notify user on editor changes and provide options to choose from discard or save
Andreas Kohlbecker
06:20 PM feature request #7906 (Resolved): AbstractPopupEditor: Notify user on editor changes and provide options to choose from discard or save
Applied in changeset commit:cdm-vaadin|de9c748c7ddf20de3021ee578f644d58d9bc5683. Andreas Kohlbecker
06:19 PM feature request #7906: AbstractPopupEditor: Notify user on editor changes and provide options to choose from discard or save
Confirmation dialog implemented:
![](picture491-1.png)
Andreas Kohlbecker
05:01 PM feature request #7906 (Closed): AbstractPopupEditor: Notify user on editor changes and provide options to choose from discard or save
Andreas Kohlbecker
05:13 PM feature request #7903: Add treeIndex with rank to cdm light export
Katja Luther wrote:
> noch eine kurze Anmerkung, die Sortierung im Navigator ist eine Preference im Editor, man kann...
Andreas Müller
01:47 PM feature request #7903: Add treeIndex with rank to cdm light export
noch eine kurze Anmerkung, die Sortierung im Navigator ist eine Preference im Editor, man kann wählen zwischen alphab... Katja Luther
01:40 PM feature request #7903 (Resolved): Add treeIndex with rank to cdm light export
Hallo,
hier die Mails zur Taxon-Sortierung.
Wenn ich den TreeIndex richtig verstehe, dann ist das eine weitere Tabe...
Katja Luther
04:52 PM bug #7878 (Resolved): Edit CollectionCode not saved
fixed! Please review. Andreas Kohlbecker
04:28 PM bug #7905 (Resolved): NPE in InstitutionEditorPresenter
Applied in changeset commit:cdm-vaadin|e440fd7507f08b9c3e1c30af34f53d35bb044c63. Andreas Kohlbecker
03:32 PM bug #7905 (Closed): NPE in InstitutionEditorPresenter
[reported by Heba]
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/0ddaa1fb-99b7-4666-859f-7bd...
Andreas Kohlbecker
03:23 PM bug #7904 (Feedback): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
I suggest two modifications:
1. `DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber()` without the...
Andreas Kohlbecker
02:12 PM bug #7904: DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
The creation of Teams in this methods seems to be completely unnecessary Andreas Kohlbecker
02:06 PM bug #7904 (Closed): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
The root cause for the excessive memory allocation reported in #7900 is the `DerivedUnitFacadeFieldUnitCacheStrategy.... Andreas Kohlbecker
02:11 PM bug #7900: Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
The `DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber()` is actually the root cause for the massive... Andreas Kohlbecker
01:42 PM feature request #7887 (Resolved): Use DTOs in term editor
Katja Luther wrote:
> One open issue:
>
> when creating a new defined term, the selection is still on the vocabul...
Patrick Plitzner

11/12/2018

07:21 PM bug #7236: Make available distribution status a database preference for TaxEditor distribution editor
Probably (1) is solved now. Can you verify this?
Is (2) still an open issue or is it solved? Or will it be solved ...
Andreas Müller
07:13 PM feature request #7345: [E+M] Common name references selectable in TaxEditor
Can you add openIssues to the ticket, so we remember what is still missing. Or is it already fully solved and can be ... Andreas Müller
07:10 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
As this does not seem to be solved yet I move it to the next version. Andreas Müller
07:08 PM feature request #7886: Divide local preferences to db dependend local preferences
is the resolved or are there open issues?
Maybe we need to clearly define somewhere which preferences are DB depen...
Andreas Müller
06:21 PM bug #7900 (Resolved): Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
Andreas Kohlbecker
04:45 PM bug #7900: Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
The root cause for the problem is the `RegistrationWorkingsetPresenter.onDoneWithTaxonnameEditor()` method in which a... Andreas Kohlbecker
02:12 PM bug #7900: Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
It seems as if the `DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber()` is causing the massive memo... Andreas Kohlbecker
06:05 PM bug #7892 (Closed): RegistrationWorkingsetEditor: LIE creating new name for book section
Andreas Kohlbecker
05:46 PM bug #7892 (Feedback): RegistrationWorkingsetEditor: LIE creating new name for book section
so this issue is solved and we can close it now? Andreas Kohlbecker
05:04 PM feature request #7902 (In Progress): Allow default values for PreferencePredicates
Generally implemented but for existing predicates we still need to define default values.
For boolean and/or UUIDs...
Andreas Müller
04:41 PM feature request #7902 (Closed): Allow default values for PreferencePredicates
Andreas Müller
04:51 PM feature request #7901 (Resolved): Make PreferencePredicates an interface to allow multiple implementations (e.g. for client apps, for grouping, for data type specific instances, etc.)
Andreas Müller
04:39 PM feature request #7901 (Closed): Make PreferencePredicates an interface to allow multiple implementations (e.g. for client apps, for grouping, for data type specific instances, etc.)
Andreas Müller
12:43 PM feature request #7887 (Feedback): Use DTOs in term editor
One open issue:
when creating a new defined term, the selection is still on the vocabulary, for lists with several...
Katja Luther
12:40 PM feature request #7887 (Closed): Use DTOs in term editor
looks fine now! Katja Luther
08:59 AM feature request #7887 (Resolved): Use DTOs in term editor
Katja Luther wrote:
> some issues I recognized while testing:
>
> * after creating a new vocabulary the editor do...
Patrick Plitzner

11/09/2018

02:54 PM feature request #7887: Use DTOs in term editor
some issues I recognized while testing:
* the details view updates with every keystroke
* sometimes saving takes ...
Katja Luther
12:34 PM bug #7900 (Closed): Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets

Adding a new name to the registration workingset *Kulikovskiy, M., Lange-Bertalot, H., Metzeltin, D. & al. - Lake B...
Andreas Kohlbecker
11:10 AM feature request #7899: enable orthographic name correction in Vaadin
Note: The term "orthographic variant" is to broad for our case, because it includes also variants in different public... Wolf-Henning Kusber
10:56 AM feature request #7899 (Closed): enable orthographic name correction in Vaadin
Subject: validly published names are in (up to) 10% not correctly formed according to the rules of the ICN. Such name... Wolf-Henning Kusber
09:17 AM report #7898: using jstack on cdmserver with jsvc reports all non native threads as BLOCKED

Conclusion: jsvc makes it harder to analyse performance problems on the servers since jstack can not be used to get...
Andreas Kohlbecker
09:17 AM report #7898 (Resolved): using jstack on cdmserver with jsvc reports all non native threads as BLOCKED
Andreas Kohlbecker
09:08 AM report #7898 (In Progress): using jstack on cdmserver with jsvc reports all non native threads as BLOCKED
Andreas Kohlbecker

11/08/2018

06:47 PM report #7898: using jstack on cdmserver with jsvc reports all non native threads as BLOCKED
next thing to test: start cdm-server without jsvc and analyze the stacks again. Andreas Kohlbecker
06:27 PM report #7898 (Closed): using jstack on cdmserver with jsvc reports all non native threads as BLOCKED
in the cdm-server many threads are blocked.
Analysis of this situation:
(*Used tool: http://fastthread.io*)
...
Andreas Kohlbecker
03:17 PM bug #7882 (Duplicate): TeamOrPersonField: exception when selecting author
Andreas Kohlbecker
03:15 PM bug #7881: reference selection combobox broken after error in ...
this is most probably a duplicate of #7559 Andreas Kohlbecker
03:03 PM bug #7892: RegistrationWorkingsetEditor: LIE creating new name for book section
Test 1 (test system): Book entered as admin into Vaadin, Book section as submitter in vaadin, new name and type for e... Wolf-Henning Kusber
02:46 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Der selbe Fehler war nun reproduzierbar!
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/b52f4...
Andreas Kohlbecker
02:41 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Genau: es ist 2 x der gleiche String mit unterschiedlicher Referenz, daher Neueingabe.

Ich habe versucht den Fehl...
Andreas Kohlbecker
02:41 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
> Ich hatte Abas berolinensis A.Braun eingegeben,
> dann als validated name noch mal Abas berolinensis neu eingegebe...
Andreas Kohlbecker
02:40 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Kann es nicht mehr sagen, konnte es auch nicht nachvollziehen

Ich hatte Abas berolinensis A.Braun eingegeben,
da...
Andreas Kohlbecker
02:40 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Hast du noch ein paar mehr details für mich?

1. Welcher Name,
2. Welcher validated Name dazu?
3. Welchen Auto...
Andreas Kohlbecker
02:40 PM bug #7897 (Duplicate): TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Testsystem:
http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/537f9b7b-42d4-4b40-949b-1b6...
Andreas Kohlbecker
02:36 PM bug #7559 (Resolved): possibly corrupted hiberante session after previous error on saving editor
hopefully fixed now completely Andreas Kohlbecker
02:30 PM bug #7559: possibly corrupted hiberante session after previous error on saving editor
even if the session is cleared in the `CdmStore.saveBean(T bean, AbstractView view)` method in the finally clause, a ... Andreas Kohlbecker
01:58 PM bug #7559 (In Progress): possibly corrupted hiberante session after previous error on saving editor
reopening this issue since it is not fully solved for all cases Andreas Kohlbecker
12:50 PM bug #7896 (Closed): NPE, NullPointerException in RelationshipTermBase

~~~
[flora-malesiana] 2018-11-08 12:24:42,410 INFO [qtp1207140081-129] [eu.etaxonomy.cdm.remote.controller.Taxon...
Andreas Kohlbecker
12:48 PM bug #7895 (Worksforme): registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in RegistrationWorkingSet
~~~
[palmae] 2018-11-08 12:28:50,646 INFO [qtp1207140081-933] [eu.etaxonomy.cdm.remote.controller.RegistrationDTOCon...
Andreas Kohlbecker
12:37 PM feature request #7894 (In Progress): [CHECK] Import sourceNumber as Identifier for references
Andreas Müller
12:26 PM feature request #7894 (Closed): [CHECK] Import sourceNumber as Identifier for references
Andreas Müller

11/07/2018

05:46 PM bug #7893 (Closed): RegistrationWorkingsetEditor: canceling new name editor leaves the new name button disabled
Andreas Kohlbecker
04:37 PM bug #7893 (Resolved): RegistrationWorkingsetEditor: canceling new name editor leaves the new name button disabled
Applied in changeset commit:cdm-vaadin|7d55de9a1fde53d044f9ee8cc51c7a702780ee67. Andreas Kohlbecker
04:36 PM bug #7893 (Closed): RegistrationWorkingsetEditor: canceling new name editor leaves the new name button disabled
Andreas Kohlbecker
05:45 PM bug #7892: RegistrationWorkingsetEditor: LIE creating new name for book section
please test if this is still reproducible Andreas Kohlbecker
05:44 PM bug #7892 (Resolved): RegistrationWorkingsetEditor: LIE creating new name for book section
Applied in changeset commit:cdm-vaadin|3e625af91f82acd7a9d628e09fe0e2f43f8c84c2. Andreas Kohlbecker
04:28 PM bug #7892 (Closed): RegistrationWorkingsetEditor: LIE creating new name for book section
This LazyInitializationException seems to require special circumstances to be reproducible:
1. login as *admin*
...
Andreas Kohlbecker
11:47 AM task #5857: show nomenclatural status for for representations of TaxonName
also relevant for E+M, need to check how this is handled in BM E+M Andreas Müller
11:32 AM task #7890 (New): Display of name relations in the data portal [master ticket]
There are multiple issues regarding the display of name relationships in the portal, this ticket encloses all of these. Andreas Kohlbecker

11/06/2018

03:31 PM feature request #7888: TypeSpecimenEditor: Collection date should be timespan
please review Andreas Kohlbecker
03:31 PM feature request #7888 (Resolved): TypeSpecimenEditor: Collection date should be timespan
Applied in changeset commit:cdm-vaadin|6fa4d6045855f038548d75d54ad5776f770f1992. Andreas Kohlbecker
02:03 PM feature request #7888: TypeSpecimenEditor: Collection date should be timespan
In the GatheringEvent the gatheringDate setter and getters only operate with Partials but the gatheringDate value is... Andreas Kohlbecker
11:47 AM feature request #7888: TypeSpecimenEditor: Collection date should be timespan
Collection geo reference: uncertainty already solved Wolf-Henning Kusber
10:20 AM feature request #7888 (Closed): TypeSpecimenEditor: Collection date should be timespan
There is an uncertainty in many old and new publications, for example only mm.yyyy or Autumn YY given, this can be ha... Wolf-Henning Kusber
01:30 PM bug #7889 (Closed): IE 11 cannot access apache on edit-comunity over https
The IE 11 which has a user agent string like
~~~
Mozilla/5.0 (Windows NT 6.3; Trident/7.0; rv:11.0) like Gecko
...
Andreas Kohlbecker
01:20 PM bug #7889 (Closed): IE 11 cannot access apache on edit-comunity over https
The following URLs can not be accessed with IE 11
* https://dev.e-taxonomy.eu/redmine/projects/edit/wiki
* https...
Andreas Kohlbecker
11:20 AM task #7846: PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar.
please take a look Andreas Kohlbecker
11:12 AM task #7846 (Resolved): PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar.
Applied in changeset commit:cdm-vaadin|ae69029fdb060770bd05a8c3cf578541bf01daf9. Andreas Kohlbecker

11/05/2018

02:14 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
The general DB preferences are moved now to an extra page so they are not stored, if not opened.
Katja Luther
01:49 PM feature request #7887 (Closed): Use DTOs in term editor
Patrick Plitzner
01:40 PM feature request #7886: Divide local preferences to db dependend local preferences
The local preferences are stored with the instance name now. The setting of default values are moved to contextStart ... Katja Luther
01:35 PM feature request #7886 (Closed): Divide local preferences to db dependend local preferences
the local preferences are set for a taxEditor instance which is critical if the different cdm instances have differen... Katja Luther
12:10 PM bug #7883 (Closed): IndexOutOfBoundsException in TermComboElement
this works as expected. Katja Luther
11:37 AM bug #7880 (In Progress): Implement centralized preference default loading strategy
The initialization of the preferences is already moved to contextStart in LifeCycleManager, so the cdm data store is ... Katja Luther

11/02/2018

03:00 PM bug #7885: registration search by name finds also typifications for this name
Combined seach name=Achnanthes gracillima plus Type=lectotype with no result (feature request)
Search=lectotype gi...
Wolf-Henning Kusber
12:06 PM bug #7885 (Worksforme): registration search by name finds also typifications for this name
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/f40c2286-1ba2-40b4-8afb-bd383b9b5312
Production ...
Wolf-Henning Kusber
02:53 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Reference Editor of Vaadin (2018-11-02) in square brackets: Differences in the TaxEditor
*Article*
Date published...
Wolf-Henning Kusber
12:00 PM bug #7884 (Duplicate): Replacement name not shown in Portal
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/144a44d0-730e-42b5-82b5-6d012db7d5d7
Production ...
Wolf-Henning Kusber
09:42 AM bug #7883 (Resolved): IndexOutOfBoundsException in TermComboElement
Patrick Plitzner
09:18 AM bug #7883: IndexOutOfBoundsException in TermComboElement
Fixed the problem by removing ambiguous method `setTerms()` which "overwrote" the actual filtering of the terms accor... Patrick Plitzner
08:56 AM bug #7883 (Closed): IndexOutOfBoundsException in TermComboElement
The combo element does not filter its elements according to the feature. It always shows all terms.
Example: Confi...
Patrick Plitzner
 

Also available in: Atom