Project

General

Profile

Activity

From 10/15/2018 to 11/13/2018

11/13/2018

06:21 PM feature request #7906 (Closed): AbstractPopupEditor: Notify user on editor changes and provide op...
Andreas Kohlbecker
06:20 PM feature request #7906 (Resolved): AbstractPopupEditor: Notify user on editor changes and provide ...
Applied in changeset commit:cdm-vaadin|de9c748c7ddf20de3021ee578f644d58d9bc5683. Andreas Kohlbecker
06:19 PM feature request #7906: AbstractPopupEditor: Notify user on editor changes and provide options to ...
Confirmation dialog implemented:
![](picture491-1.png)
Andreas Kohlbecker
05:01 PM feature request #7906 (Closed): AbstractPopupEditor: Notify user on editor changes and provide op...
Andreas Kohlbecker
05:13 PM feature request #7903: Add treeIndex with rank to cdm light export
Katja Luther wrote:
> noch eine kurze Anmerkung, die Sortierung im Navigator ist eine Preference im Editor, man kann...
Andreas Müller
01:47 PM feature request #7903: Add treeIndex with rank to cdm light export
noch eine kurze Anmerkung, die Sortierung im Navigator ist eine Preference im Editor, man kann wählen zwischen alphab... Katja Luther
01:40 PM feature request #7903 (Resolved): Add treeIndex with rank to cdm light export
Hallo,
hier die Mails zur Taxon-Sortierung.
Wenn ich den TreeIndex richtig verstehe, dann ist das eine weitere Tabe...
Katja Luther
04:52 PM bug #7878 (Resolved): Edit CollectionCode not saved
fixed! Please review. Andreas Kohlbecker
04:28 PM bug #7905 (Resolved): NPE in InstitutionEditorPresenter
Applied in changeset commit:cdm-vaadin|e440fd7507f08b9c3e1c30af34f53d35bb044c63. Andreas Kohlbecker
03:32 PM bug #7905 (Closed): NPE in InstitutionEditorPresenter
[reported by Heba]
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/0ddaa1fb-99b7-4666-859f-7bd...
Andreas Kohlbecker
03:23 PM bug #7904 (Feedback): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() create...
I suggest two modifications:
1. `DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber()` without the...
Andreas Kohlbecker
02:12 PM bug #7904: DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary...
The creation of Teams in this methods seems to be completely unnecessary Andreas Kohlbecker
02:06 PM bug #7904 (Feedback): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() create...
The root cause for the excessive memory allocation reported in #7900 is the `DerivedUnitFacadeFieldUnitCacheStrategy.... Andreas Kohlbecker
02:11 PM bug #7900: Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
The `DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber()` is actually the root cause for the massive... Andreas Kohlbecker
01:42 PM feature request #7887 (Resolved): Use DTOs in term editor
Katja Luther wrote:
> One open issue:
>
> when creating a new defined term, the selection is still on the vocabul...
Patrick Plitzner

11/12/2018

07:21 PM bug #7236: Make available distribution status a database preference for TaxEditor distribution ed...
Probably (1) is solved now. Can you verify this?
Is (2) still an open issue or is it solved? Or will it be solved ...
Andreas Müller
07:13 PM feature request #7345: [E+M] Common name references selectable in TaxEditor
Can you add openIssues to the ticket, so we remember what is still missing. Or is it already fully solved and can be ... Andreas Müller
07:10 PM bug #7699: NPE when searching for specimen in bulk editor
As this does not seem to be solved yet I move it to the next version. Andreas Müller
07:08 PM feature request #7886: Divide local preferences to db dependend local preferences
is the resolved or are there open issues?
Maybe we need to clearly define somewhere which preferences are DB depen...
Andreas Müller
06:21 PM bug #7900 (Resolved): Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
Andreas Kohlbecker
04:45 PM bug #7900: Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
The root cause for the problem is the `RegistrationWorkingsetPresenter.onDoneWithTaxonnameEditor()` method in which a... Andreas Kohlbecker
02:12 PM bug #7900: Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
It seems as if the `DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber()` is causing the massive memo... Andreas Kohlbecker
06:05 PM bug #7892 (Closed): RegistrationWorkingsetEditor: LIE creating new name for book section
Andreas Kohlbecker
05:46 PM bug #7892 (Feedback): RegistrationWorkingsetEditor: LIE creating new name for book section
so this issue is solved and we can close it now? Andreas Kohlbecker
05:04 PM feature request #7902 (In Progress): Allow default values for PreferencePredicates
Generally implemented but for existing predicates we still need to define default values.
For boolean and/or UUIDs...
Andreas Müller
04:41 PM feature request #7902 (In Progress): Allow default values for PreferencePredicates
Andreas Müller
04:51 PM feature request #7901 (Resolved): Make PreferencePredicates an interface to allow multiple implem...
Andreas Müller
04:39 PM feature request #7901 (Closed): Make PreferencePredicates an interface to allow multiple implemen...
Andreas Müller
12:43 PM feature request #7887 (Feedback): Use DTOs in term editor
One open issue:
when creating a new defined term, the selection is still on the vocabulary, for lists with several...
Katja Luther
12:40 PM feature request #7887 (Closed): Use DTOs in term editor
looks fine now! Katja Luther
08:59 AM feature request #7887 (Resolved): Use DTOs in term editor
Katja Luther wrote:
> some issues I recognized while testing:
>
> * after creating a new vocabulary the editor do...
Patrick Plitzner

11/09/2018

02:54 PM feature request #7887: Use DTOs in term editor
some issues I recognized while testing:
* the details view updates with every keystroke
* sometimes saving takes ...
Katja Luther
12:34 PM bug #7900 (Closed): Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets

Adding a new name to the registration workingset *Kulikovskiy, M., Lange-Bertalot, H., Metzeltin, D. & al. - Lake B...
Andreas Kohlbecker
11:10 AM feature request #7899: enable orthographic name correction in Vaadin
Note: The term "orthographic variant" is to broad for our case, because it includes also variants in different public... Wolf-Henning Kusber
10:56 AM feature request #7899 (Closed): enable orthographic name correction in Vaadin
Subject: validly published names are in (up to) 10% not correctly formed according to the rules of the ICN. Such name... Wolf-Henning Kusber
09:17 AM report #7898: using jstack on cdmserver with jsvc reports all non native thrads as BLOCKED

Conclusion: jsvc makes it harder to analyse performance problems on the servers since jstack can not be used to get...
Andreas Kohlbecker
09:17 AM report #7898 (Resolved): using jstack on cdmserver with jsvc reports all non native thrads as BLO...
Andreas Kohlbecker
09:08 AM report #7898 (In Progress): using jstack on cdmserver with jsvc reports all non native thrads as ...
Andreas Kohlbecker

11/08/2018

06:47 PM report #7898: using jstack on cdmserver with jsvc reports all non native thrads as BLOCKED
next thing to test: start cdm-server without jsvc and analyze the stacks again. Andreas Kohlbecker
06:27 PM report #7898 (Resolved): using jstack on cdmserver with jsvc reports all non native thrads as BLO...
in the cdm-server many threads are blocked.
Analysis of this situation:
(*Used tool: http://fastthread.io*)
...
Andreas Kohlbecker
03:17 PM bug #7882 (Duplicate): TeamOrPersonField: exception when selecting author
Andreas Kohlbecker
03:15 PM bug #7881: reference selection combobox broken after error in ...
this is most probably a duplicate of #7559 Andreas Kohlbecker
03:03 PM bug #7892: RegistrationWorkingsetEditor: LIE creating new name for book section
Test 1 (test system): Book entered as admin into Vaadin, Book section as submitter in vaadin, new name and type for e... Wolf-Henning Kusber
02:46 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Der selbe Fehler war nun reproduzierbar!
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/b52f4...
Andreas Kohlbecker
02:41 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Genau: es ist 2 x der gleiche String mit unterschiedlicher Referenz, daher Neueingabe.

Ich habe versucht den Fehl...
Andreas Kohlbecker
02:41 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
> Ich hatte Abas berolinensis A.Braun eingegeben,
> dann als validated name noch mal Abas berolinensis neu eingegebe...
Andreas Kohlbecker
02:40 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Kann es nicht mehr sagen, konnte es auch nicht nachvollziehen

Ich hatte Abas berolinensis A.Braun eingegeben,
da...
Andreas Kohlbecker
02:40 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Hast du noch ein paar mehr details für mich?

1. Welcher Name,
2. Welcher validated Name dazu?
3. Welchen Auto...
Andreas Kohlbecker
02:40 PM bug #7897 (Duplicate): TeamOrPersonField: BindException: The given field is not part of this Fiel...
Testsystem:
http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/537f9b7b-42d4-4b40-949b-1b6...
Andreas Kohlbecker
02:36 PM bug #7559 (Resolved): possibly corrupted hiberante session after previous error on saving editor
hopefully fixed now completely Andreas Kohlbecker
02:30 PM bug #7559: possibly corrupted hiberante session after previous error on saving editor
even if the session is cleared in the `CdmStore.saveBean(T bean, AbstractView view)` method in the finally clause, a ... Andreas Kohlbecker
01:58 PM bug #7559 (In Progress): possibly corrupted hiberante session after previous error on saving editor
reopening this issue since it is not fully solved for all cases Andreas Kohlbecker
12:50 PM bug #7896 (Closed): NPE, NullPointerException in RelationshipTermBase

~~~
[flora-malesiana] 2018-11-08 12:24:42,410 INFO [qtp1207140081-129] [eu.etaxonomy.cdm.remote.controller.Taxon...
Andreas Kohlbecker
12:48 PM bug #7895 (New): registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in Registra...
~~~
[palmae] 2018-11-08 12:28:50,646 INFO [qtp1207140081-933] [eu.etaxonomy.cdm.remote.controller.RegistrationDTOCon...
Andreas Kohlbecker
12:37 PM feature request #7894 (In Progress): [CHECK] Import sourceNumber as Identifier for references
Andreas Müller
12:26 PM feature request #7894 (Resolved): [CHECK] Import sourceNumber as Identifier for references
Andreas Müller

11/07/2018

05:46 PM bug #7893 (Closed): RegistrationWorkingsetEditor: canceling new name editor leaves the new name b...
Andreas Kohlbecker
04:37 PM bug #7893 (Resolved): RegistrationWorkingsetEditor: canceling new name editor leaves the new name...
Applied in changeset commit:cdm-vaadin|7d55de9a1fde53d044f9ee8cc51c7a702780ee67. Andreas Kohlbecker
04:36 PM bug #7893 (Closed): RegistrationWorkingsetEditor: canceling new name editor leaves the new name b...
Andreas Kohlbecker
05:45 PM bug #7892: RegistrationWorkingsetEditor: LIE creating new name for book section
please test if this is still reproducible Andreas Kohlbecker
05:44 PM bug #7892 (Resolved): RegistrationWorkingsetEditor: LIE creating new name for book section
Applied in changeset commit:cdm-vaadin|3e625af91f82acd7a9d628e09fe0e2f43f8c84c2. Andreas Kohlbecker
04:28 PM bug #7892 (Closed): RegistrationWorkingsetEditor: LIE creating new name for book section
This LazyInitializationException seems to require special circumstances to be reproducible:
1. login as *admin*
...
Andreas Kohlbecker
11:47 AM task #5857: show status for "non" names?
also relevant for E+M, need to check how this is handled in BM E+M Andreas Müller
11:32 AM task #7890 (New): Display of name relations in the data portal [master ticket]
There are multiple issues regarding the display of name relationships in the portal, this ticket encloses all of these. Andreas Kohlbecker

11/06/2018

03:31 PM feature request #7888: TypeSpecimenEditor: Collection date should be timespan
please review Andreas Kohlbecker
03:31 PM feature request #7888 (Resolved): TypeSpecimenEditor: Collection date should be timespan
Applied in changeset commit:cdm-vaadin|6fa4d6045855f038548d75d54ad5776f770f1992. Andreas Kohlbecker
02:03 PM feature request #7888: TypeSpecimenEditor: Collection date should be timespan
In the GatheringEvent the gatheringDate setter and getters only operate with Partials but the gatheringDate value is... Andreas Kohlbecker
11:47 AM feature request #7888: TypeSpecimenEditor: Collection date should be timespan
Collection geo reference: uncertainty already solved Wolf-Henning Kusber
10:20 AM feature request #7888 (Closed): TypeSpecimenEditor: Collection date should be timespan
There is an uncertainty in many old and new publications, for example only mm.yyyy or Autumn YY given, this can be ha... Wolf-Henning Kusber
01:30 PM bug #7889 (Closed): IE 11 cannot access apache on edit-comunity over https
The IE 11 which has a user agent string like
~~~
Mozilla/5.0 (Windows NT 6.3; Trident/7.0; rv:11.0) like Gecko
...
Andreas Kohlbecker
01:20 PM bug #7889 (Closed): IE 11 cannot access apache on edit-comunity over https
The following URLs can not be accessed with IE 11
* https://dev.e-taxonomy.eu/redmine/projects/edit/wiki
* https...
Andreas Kohlbecker
11:20 AM task #7846: PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar.
please take a look Andreas Kohlbecker
11:12 AM task #7846 (Resolved): PopupEditors show editor context information as 'breadcrumbs' in the heade...
Applied in changeset commit:cdm-vaadin|ae69029fdb060770bd05a8c3cf578541bf01daf9. Andreas Kohlbecker

11/05/2018

02:14 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
The general DB preferences are moved now to an extra page so they are not stored, if not opened.
Katja Luther
01:49 PM feature request #7887 (Closed): Use DTOs in term editor
Patrick Plitzner
01:40 PM feature request #7886: Divide local preferences to db dependend local preferences
The local preferences are stored with the instance name now. The setting of default values are moved to contextStart ... Katja Luther
01:35 PM feature request #7886 (Resolved): Divide local preferences to db dependend local preferences
the local preferences are set for a taxEditor instance which is critical if the different cdm instances have differen... Katja Luther
12:10 PM bug #7883 (Closed): IndexOutOfBoundsException in TermComboElement
this works as expected. Katja Luther
11:37 AM bug #7880 (In Progress): Implement centralized preference default loading strategy
The initialization of the preferences is already moved to contextStart in LifeCycleManager, so the cdm data store is ... Katja Luther

11/02/2018

03:00 PM bug #7885: Lectotype in PhycoBank Portal
Combined seach name=Achnanthes gracillima plus Type=lectotype with no result (feature request)
Search=lectotype gi...
Wolf-Henning Kusber
12:06 PM bug #7885 (New): Lectotype in PhycoBank Portal
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/f40c2286-1ba2-40b4-8afb-bd383b9b5312
Production ...
Wolf-Henning Kusber
02:53 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Reference Editor of Vaadin (2018-11-02) in square brackets: Differences in the TaxEditor
*Article*
Date published...
Wolf-Henning Kusber
12:00 PM bug #7884 (New): Replacement name not shown in Portal
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/144a44d0-730e-42b5-82b5-6d012db7d5d7
Production ...
Wolf-Henning Kusber
09:42 AM bug #7883 (Resolved): IndexOutOfBoundsException in TermComboElement
Patrick Plitzner
09:18 AM bug #7883: IndexOutOfBoundsException in TermComboElement
Fixed the problem by removing ambiguous method `setTerms()` which "overwrote" the actual filtering of the terms accor... Patrick Plitzner
08:56 AM bug #7883 (Closed): IndexOutOfBoundsException in TermComboElement
The combo element does not filter its elements according to the feature. It always shows all terms.
Example: Confi...
Patrick Plitzner

10/31/2018

09:34 AM feature request #7875 (Resolved): Add multiple area selection to descriptive data set editor
Patrick Plitzner

10/30/2018

10:42 PM bug #7882 (Duplicate): TeamOrPersonField: exception when selecting author
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/b52f4ef7-5743-44eb-84c9-0b06e67a256d
Produktions...
Andreas Kohlbecker
10:38 PM bug #7881 (Closed): reference selection combobox broken after error in ...
reported by henning:
17:44, der Fehler, den ich eben gemeldet habe (#7882) kann nicht ganz so dramatisch gewesen...
Andreas Kohlbecker
02:55 PM bug #7880 (Closed): Implement centralized preference default loading strategy
Some preferences are loaded at Taxeditor startup before any connection to a CDM data source was made. Since some pref... Patrick Plitzner
11:52 AM bug #7878: Edit CollectionCode not saved
The type designation editor is not refreshing the cache with the updated collection entity. Andreas Kohlbecker
11:22 AM bug #7879 (New): Book CacheStrategy does not show 'place published', 'publisher', 'editor'
the same problem seems to exist with `Print series`
----
Originally reported by Henning:
Hallo Andreas,
i...
Andreas Kohlbecker

10/29/2018

04:31 PM feature request #7408: [E+M] Support for preferred common names in data portal
~~~
SELECT DISTINCT tb.id, tb.uuid, tb.titleCache, m.markerType_id
FROM DescriptionElementBase deb INNER JOIN Descr...
Andreas Müller
04:24 PM feature request #7408: [E+M] Support for preferred common names in data portal
Campanula trachelium (http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/taxon/ec389413-4102-43bc-9... Andreas Müller
11:50 AM feature request #7408 (Feedback): [E+M] Support for preferred common names in data portal
Please provide an example dataset. Andreas Kohlbecker
04:08 PM bug #7877: Form elements disappear in reference dialog after changing the reference type
Other work around: use "New" in bulk editor. Type change in details view works. Andreas Müller
01:14 PM bug #7877: Form elements disappear in reference dialog after changing the reference type
This was a refresh problem that was introduced with the performance optimization for this release.
Workaround unti...
Patrick Plitzner
01:12 PM bug #7877 (Resolved): Form elements disappear in reference dialog after changing the reference type
Applied in changeset commit:taxeditor|d728f00fbfb5b64be4c1f1fc3c6bd4d1162f42c7. Patrick Plitzner
12:54 PM bug #7877: Form elements disappear in reference dialog after changing the reference type
Patrick meint:
> Das ist ein Refresh-Problem
> einmal am Dialogfenster zupfen und es ist alles da
> zupfen = resize
Andreas Kohlbecker
11:49 AM bug #7877 (Closed): Form elements disappear in reference dialog after changing the reference type
TaxEditor 5.4.0
Tested with PhycoBank
File, New, Reference opens Reference Editor with default value "generic".
Se...
Wolf-Henning Kusber
02:04 PM bug #7878 (Closed): Edit CollectionCode not saved
Vaadin UI, production system:
Working Set http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/cfdf0...
Wolf-Henning Kusber
10:28 AM feature request #7876 (New): Vaadin UI status update
Thema: Update bei Status-Änderung, betrifft Produktionssystem:
Als Curator muss jeder Eintrag jeweils von Preparatio...
Wolf-Henning Kusber

10/27/2018

12:04 PM bug #7872: use firePropertyChange only if the value has changed
Andreas Kohlbecker wrote:
> great and agreed!
>
> one hit before closing this as "worksforme", just in case you m...
Andreas Müller

10/26/2018

06:24 PM bug #7870 (Closed): RegistrationWorkingsetEditor: Internal error on clicking "new name"
I added to modifications
* adding the WindowErrorHandler also to the VaadinSession
* clearing the session to wipe...
Andreas Kohlbecker
01:45 PM bug #7870: RegistrationWorkingsetEditor: Internal error on clicking "new name"
above sub issue copied to #7874 Andreas Kohlbecker
01:42 PM bug #7870: RegistrationWorkingsetEditor: Internal error on clicking "new name"
AM:
ganz so kritisch ist es glaube ich nicht. Letztlich muss man nur den cache updaten mit dem Cacheupdater. Aller...
Andreas Müller
01:29 PM bug #7870: RegistrationWorkingsetEditor: Internal error on clicking "new name"
The initial problem is cause by the `protectedNomenclaturalTitleCache` flag of the Team being set to `false`. When bi... Andreas Kohlbecker
09:01 AM bug #7870 (Closed): RegistrationWorkingsetEditor: Internal error on clicking "new name"
Encrypted by a verified device
14:04 als submitter eine neue Referenz angelegt (StartRegistrationView), dann new "C...
Andreas Kohlbecker
06:16 PM bug #7872 (Worksforme): use firePropertyChange only if the value has changed
great and agreed!
one hit before closing this as "worksforme", just in case you missed this out so far:
Since j...
Andreas Kohlbecker
04:03 PM bug #7872 (Resolved): use firePropertyChange only if the value has changed
If you follow the firePropertyChange call you come to PropertyChangeSupport
~~~ java
public void fireProperty...
Andreas Müller
12:19 PM bug #7872 (Worksforme): use firePropertyChange only if the value has changed
this is an example from `Team` where a `PropertyChangeEvent` is fired even if `this.nomenclaturalTitle.equals(nomenc... Andreas Kohlbecker
05:42 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
please review Andreas Kohlbecker
05:40 PM bug #7874 (Resolved): TeamOrPersonBase entity can become unusable due to replacement of the title...
Applied in changeset commit:cdmlib|cfcf723b6485a38d3b39e4d53696036d212d6d6c. Andreas Kohlbecker
05:39 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
Running the CacheUpdater should fix the issue. But the method `IdentifiableServiceBase.updateTitleCacheForSingleEntit... Andreas Kohlbecker
04:07 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
Andreas Kohlbecker wrote:
> The Problem comes from the Person named "A.M. Monroe" which has been entered in the Taxe...
Andreas Müller
02:27 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
The Problem comes from the Person named "A.M. Monroe" which has been entered in the Taxeditor by Henning on 2018-04-2... Andreas Kohlbecker
01:45 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
AM:
ganz so kritisch ist es glaube ich nicht. Letztlich muss man nur den cache updaten mit dem Cacheupdater. Aller...
Andreas Kohlbecker
01:44 PM bug #7874 (Closed): TeamOrPersonBase entity can become unusable due to replacement of the title c...
This issue is quite good explainable by the case examined in #7870#note-1 :
The initial problem is cause by the `p...
Andreas Kohlbecker
04:39 PM feature request #7640: Update ISO country names where necessary
Musste heute im PhycoBank Production-System einen Country-Eintrag wieder rausnehmen. Ich wollte den Eintrag "Romania"... Wolf-Henning Kusber
04:06 PM feature request #7875 (Closed): Add multiple area selection to descriptive data set editor
Patrick Plitzner
01:27 PM feature request #7873 (Resolved): Implement copy&paste for feature nodes in feature tree editor
Applied in changeset commit:taxeditor|f3065796575239dbdc4afab4207bf70d87d72536. Patrick Plitzner
01:26 PM feature request #7873 (Closed): Implement copy&paste for feature nodes in feature tree editor
Patrick Plitzner
12:24 PM task #7866: Phycobank UI further label improvements
wording also acceptec by Regine Wolf-Henning Kusber
09:24 AM feature request #7871 (Resolved): Open character matrix as singleton
Applied in changeset commit:taxeditor|fcb2dae63a03e03ad65a4b0f2f564a5e002c0582. Patrick Plitzner
09:24 AM feature request #7871 (Closed): Open character matrix as singleton
The character matrix should only be opened once for a descriptive data set Patrick Plitzner
09:23 AM feature request #7869 (Resolved): Run gfbio term service requests as background tasks
Patrick Plitzner
08:43 AM feature request #7869 (Closed): Run gfbio term service requests as background tasks
Patrick Plitzner
09:20 AM feature request #7868 (Resolved): Allow creating a new vocabulary in vocabulary selection dialog
Applied in changeset commit:taxeditor|aa95aad0606b24de8df073a2f2614e86ab91718b. Patrick Plitzner
08:10 AM feature request #7868 (Closed): Allow creating a new vocabulary in vocabulary selection dialog
Patrick Plitzner

10/25/2018

07:14 PM bug #7857: Update name relationship type representations and symmetrie
~~~ sql
UPDATE DefinedTermBase
SET symmetrical=0
WHERE uuid IN ('049c6358-1094-4765-9fae-c9972a0e7780', '6e23ad4...
Andreas Müller
07:11 PM feature request #7434: while importing sequences it should be possible to download fasta file
Can you please add a category? Andreas Müller
06:38 PM bug #7867 (Resolved): FieldGroup$BindException: The given field is not part of this FieldBinder i...
this issue is neither reproducible nor comprehensible, I tries to change the code in a way to avoid this issue in fut... Andreas Kohlbecker
06:00 PM bug #7867 (Closed): FieldGroup$BindException: The given field is not part of this FieldBinder in ...
[reported by henning]
Testsystem:
http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/537f...
Andreas Kohlbecker
01:23 PM task #7355 (Closed): TaxonNamePopupEditor: newly created nomenclatural reference should be select...
works Andreas Kohlbecker
01:17 PM bug #7047 (Closed): Vaadin UI and View scope beans are not always destroyed correctly
this has been solved by the changes made for #7036 Andreas Kohlbecker
01:09 PM bug #7222 (Closed): Phycobank UI improve labels
Wolf-Henning Kusber wrote:
> Offener ToDo-Text nach Diskussion mit Nick Turland (2018-10-25)
>
> Register a new n...
Andreas Kohlbecker
11:24 AM bug #7222: Phycobank UI improve labels
Offener ToDo-Text nach Diskussion mit Nick Turland (2018-10-25)
Register a new name or a new type designation.
Wolf-Henning Kusber
01:08 PM task #7866 (Closed): Phycobank UI further label improvements
**TODO**
* RegistrationDashboard: "Register a new name or a new type designation." suggested by Henning and Nick T...
Andreas Kohlbecker
12:33 PM bug #6287 (In Progress): Rolling cdmserver.log file only contains entries from startup phase
Andreas Kohlbecker
11:09 AM bug #7855 (Closed): PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE ...
Andreas Kohlbecker
11:08 AM bug #7855 (Resolved): PersonField modifies the nomenclaturalTitle forcing users to have the UPDAT...
Applied in changeset commit:cdm-vaadin|db262dfa73bbc4f60e98b397b7986f05eefa6de6. Andreas Kohlbecker
11:03 AM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
my last nights impression on the cause of this problem was misled and thus not correct. The real cause is in the `Per... Andreas Kohlbecker
10:55 AM feature request #7775 (Closed): Factual Data label issue
remaining tasks have been moved to #7865 Patrick Plitzner
10:55 AM feature request #7865 (Resolved): Remaining factual data view label issues
Copied from #7775:
* If a source is added in the details view, and the titleCache is not protected, it should be g...
Patrick Plitzner
10:36 AM bug #7766 (Resolved): Remaining issues for using relationship DTO webservice in portal
Andreas Müller
10:23 AM feature request #7283 (Feedback): Improvements for alternative identifier search
Do I understand correctly that this functionality is only available for certain references searches? I tested for sea... Andreas Müller
10:21 AM feature request #7283: Improvements for alternative identifier search
I still fixed a new NPE: commit aaee4922 Andreas Müller
09:34 AM feature request #7864: Use short forms in cache strategy for DescriptionBase
upps, just realized this is already implemented.
Only using the short form is still missing. Therefor relabel thi...
Andreas Müller
08:53 AM feature request #7864 (New): Use short forms in cache strategy for DescriptionBase
for how to implement see #7775.
something like "Factual Data from [source] for [taxon/specimen/name].
Use shor...
Andreas Müller
08:03 AM feature request #7473: Replace PropertyChangeEvent architecture with e4 event bus in details view
subtask: Update changed source in description label (#7775#note-11) Patrick Plitzner

10/24/2018

11:04 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Patrick Plitzner wrote:
> "Änderungen an ABCD Import werden nicht gespeichert, außer allowOverride, aber auch das wi...
Katja Luther
10:33 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Andreas Müller wrote:
> If the NomenclaturalCode is once set it can not be removed anymore in the DB Pref display ev...
Katja Luther
03:28 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
If the NomenclaturalCode is once set it can not be removed anymore in the DB Pref display even if the Preferences is ... Andreas Müller
02:56 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
"Änderungen an ABCD Import werden nicht gespeichert, außer allowOverride, aber auch das wird nicht richtig reloaded b... Patrick Plitzner
11:19 AM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Das Problem ist aber eher, dass zuviel gespeichert wird.
Wenn man nur den DB Preferences Dialog öffnet und wieder sc...
Andreas Müller
08:59 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
Why should changes in type designation update the cache? Does it really update, I mean **change** the value or does i... Andreas Müller
07:51 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
I will adapt the subject of this issue since it is not adequately describing the root of the problem.
I feel like ...
Andreas Kohlbecker
07:43 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
the reason for this is that the cache strategy is modifying the `nomenclaturalTitle`
~~~
modified property found...
Andreas Kohlbecker
06:43 PM bug #7850: Further problems with term editor
Maybe one problem is the order index. After moving the area gets the highest order index though it is placed as child... Andreas Müller
06:37 PM bug #7850: Further problems with term editor
The problem always occurs during the second move. Moving first time works correctly. Andreas Müller
06:32 PM bug #7850: Further problems with term editor
Next time when opening term editor Belgium was completely gone, though in the DB everything was ok (vocabulary, paren... Andreas Müller
06:19 PM bug #7850: Further problems with term editor
still not yet fully fixed
![](picture357-1.png)
Andreas Müller
03:12 PM bug #7850 (Resolved): Further problems with term editor
Patrick Plitzner
06:22 PM bug #7814 (Closed): Section in Name and section in Basionym, usability
the status "worksforme" is applied to bug reports which can not be reproduced. In this context it means that there is... Andreas Kohlbecker
05:27 PM bug #7814 (Worksforme): Section in Name and section in Basionym, usability
Test 2: Neuer Name, neuer Autor in neuer Referenz, mit neuem Journal, ohne Fehler.
Aber: ich habe noch nicht alle ...
Wolf-Henning Kusber
05:01 PM bug #7814: Section in Name and section in Basionym, usability
Test: New reference, new name, new basionym, new section in new reference - without error Wolf-Henning Kusber
05:24 PM task #7785: CdmUserHelper caches permission information
Sorry, currently I don't have time for review. But if it works for you review is not critical I think. Andreas Müller
05:10 PM feature request #7793: Master ticket for E+M editor issues
>DB preference to make all functionality related to multiple classification and reuse taxon support unavailable (exce... Andreas Müller
05:08 PM feature request #7793: Master ticket for E+M editor issues
>DB preference to make all functionality related to multiple classification and reuse taxon support unavailable
We...
Andreas Müller
04:49 PM feature request #7793: Master ticket for E+M editor issues
Andreas Müller wrote:
> >add menu items for setting of excluded or unplaced flag
>
> it seems to work with local ...
Andreas Müller
04:24 PM feature request #7793: Master ticket for E+M editor issues
>add menu items for setting of excluded or unplaced flag
it seems to work with local settings only, if one changes...
Andreas Müller
04:09 PM feature request #7793 (Feedback): Master ticket for E+M editor issues
Change "Use checklist perspective" seems to change local settings. Once this is set to true it was impossible for me ... Andreas Müller
03:27 PM feature request #7695 (Feedback): web service providing compact TypeDesignation representation fo...
... #7863
the last open issue regarding this is mentioned in #7695#note-4
who needs this and will continue the ...
Andreas Kohlbecker
03:20 PM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
currently we don't have a web service controller with `/homotypicGroup/` as base path. This would be a requirement fo... Andreas Kohlbecker
03:15 PM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
Andreas Müller wrote:
> I wonder if we should really require a single name uuid as obligatory input parameter. The s...
Andreas Kohlbecker
03:22 PM feature request #7863 (New): /homotypicGroup/{uuid}/homotypicGroupTypeDesignationsDTO webservice ...
for details see #7695#note-9 Andreas Kohlbecker
03:10 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names...
ok, all open tasks are copied to new issues: #7860, #7861
the reason why I passed this to you is written in comme...
Andreas Kohlbecker
03:06 PM task #7862 (New): improve documentation on TaxonGraphHibernateListener and related classes
the documentation on the TaxonGraphHibernateListener is still rudimentary and need to be improved
copied from #764...
Andreas Kohlbecker
03:03 PM feature request #7861 (New): TaxonGraphHibernateListener: inject the ITaxonGraphDao into TaxonGra...
we could think about refactoring the `TaxonGraphHibernateListener` a bit:
Andreas Müller suggested to inject the `...
Andreas Kohlbecker
02:54 PM bug #7036 (Closed): correctly release vaadin view resources when the browser windows has been closed
now all spring beans like RegistrationToolbar, RegistrationUI, RegistrationWorkingsetPresenter, NavigationManagerBean... Andreas Kohlbecker
02:53 PM bug #7036 (Resolved): correctly release vaadin view resources when the browser windows has been c...
Applied in changeset commit:cdm-vaadin|b14494a9c3be6a70f64c4560209ba8d406eb635f. Andreas Kohlbecker
02:31 PM bug #7236: Make available distribution status a database preference for TaxEditor distribution ed...
It looks like the selected status are also written to the local preferences. This is very dangerous because
(1) c...
Andreas Müller
01:58 PM bug #7236 (Feedback): Make available distribution status a database preference for TaxEditor dist...
Generally it works.
Only open issue: if you change the status list you have to completely close and open the TaxE...
Andreas Müller
02:14 PM feature request #7860 (New): [Master] Remaining E+M editor issues
this is a follow up ticket for #7793 after release 5.4 for all open issues and some new issues.
Detailsview
* M...
Andreas Müller
12:57 PM bug #7859 (Closed): Increase size of CdmPreference.value
Storing longer term lists (as UUID lists) currently leads to exceptions. Andreas Müller
12:48 PM bug #7858 (New): names used in the TaxonGraph can not be deleted if the user has no DELETE permis...
Andreas Kohlbecker
12:42 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the n...
the uninomial field for genus and higher ranks can be edited again. Andreas Kohlbecker
11:09 AM bug #7222: Phycobank UI improve labels
#7222#note-15 in Diskussion (2018-10-24) Wolf-Henning Kusber
10:26 AM bug #7827 (Closed): LazyInitializationException when saving term editor (named areas)
Patrick Plitzner
09:28 AM bug #7848 (Closed): Exceptions for some cdm preference pages
Exception does not show up anymore. As it only appeared in 5.4 nightly I removed target version. Andreas Müller
09:20 AM feature request #7235 (Resolved): Make available area vocabularies a database preference for TaxE...
Applied in changeset commit:taxeditor|d4db40709483dba7f8451f64de1db944d0ba694e. Patrick Plitzner
08:54 AM feature request #7809: Improve namerelationship handling in editor
Andreas Müller wrote:
> Works fine and can be closed. Only somehow open issue is that "symmetrical" relationships ar...
Katja Luther
07:12 AM bug #7844: LoginDialog freezes Taxeditor if no connection can be established
Andreas Müller wrote:
> This has been reverted due to failing test. Or did we only ignore the test?
>
> How shoul...
Patrick Plitzner

10/23/2018

12:55 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Bulk Editor-"ShowFieldUnits in Specimen Editor (list) should be disabled.
However, we need move this to an other pag...
Andreas Müller
12:52 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In lokal preferences the "Specimens and FieldUnits" page is now always empty, even if showSpecimen = true. What was t... Andreas Müller
12:49 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Also it is not yet possible to select "allow override" if specimen are switched off in DB preferences. Andreas Müller
12:45 AM feature request #7810 (Feedback): DB preference to make all Specimen functionality/menu items inv...
Also we may want to disable the "Derivatives" perspective. Andreas Müller
12:43 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In Facts View we could remove all Features that need specimen support, or at least remove support for IndividualsAsso... Andreas Müller
12:38 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In name details view for all names of rank species and below we could remove the type designations section Andreas Müller
12:37 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In preferences we could disable the Taxonomic-TypeDeignations(Specimen) part. Andreas Müller
12:34 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
TermEditor term types DnaMarker, DeterminationModifier, KindOfUnit can also be disabled (maybe we can implement this ... Andreas Müller
12:12 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Specimen imports are still shown.
![](picture585-1.png )
Note: this might be easier to handle if we group impor...
Andreas Müller
11:29 PM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
the check for the existence of the preference is needed to check whether the page was opened or not, because the pref... Katja Luther
04:08 PM feature request #7810 (Resolved): DB preference to make all Specimen functionality/menu items inv...
Applied in changeset commit:taxeditor|53d9aad00561967e0fbb8e3a87e5c0b2e57251e7. Patrick Plitzner
03:24 PM feature request #7810 (Feedback): DB preference to make all Specimen functionality/menu items inv...
Andreas Müller
03:24 PM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Currentyl can't test because preference can not be stored. See also #7849 Andreas Müller
10:46 AM feature request #7810 (Resolved): DB preference to make all Specimen functionality/menu items inv...
I think this was mostly fixed in the master ticket. Put to resolved to do the review if something is still missing. I... Andreas Müller
12:00 AM feature request #7809: Improve namerelationship handling in editor
I will keep this assigned to me to remember to update the symmetric values on our server DBs already and to update re... Andreas Müller
11:58 PM feature request #7809 (Feedback): Improve namerelationship handling in editor
Works fine and can be closed. Only somehow open issue is that "symmetrical" relationships are now shown twice. In gen... Andreas Müller
08:59 PM feature request #7809 (Resolved): Improve namerelationship handling in editor
this should be fixed now Katja Luther
11:36 PM bug #7857: Update name relationship type representations and symmetrie
also change "is new combination blocked by" to "has blocking name" Andreas Müller
11:30 PM bug #7857 (Closed): Update name relationship type representations and symmetrie
since #7809 it is now possible to store name relationships in both directions.
Many of the direct representations ...
Andreas Müller
07:36 PM bug #7844 (Feedback): LoginDialog freezes Taxeditor if no connection can be established
This has been reverted due to failing test. Or did we only ignore the test?
How should I test it if feature is sti...
Andreas Müller
01:43 PM bug #7844 (Resolved): LoginDialog freezes Taxeditor if no connection can be established
Applied in changeset commit:taxeditor|a9c45e1e62a5e2b4af8107dba4cb1a27f9f3c076. Patrick Plitzner
12:47 PM bug #7844 (Feedback): LoginDialog freezes Taxeditor if no connection can be established
A timeout needs to be implemented Patrick Plitzner
07:34 PM feature request #7775: Factual Data label issue
final task: we should allow to set titleCache to protected, otherwise it is not possible to use user defined labels f... Andreas Müller
07:33 PM feature request #7775: Factual Data label issue
Patrick Plitzner wrote:
> The label in the factual data view is now updated when changing sources. But still it is n...
Andreas Müller
07:32 PM feature request #7775: Factual Data label issue
After creating Description it would be nice if the description gets the focus. This way you can also see the attached... Andreas Müller
07:27 PM feature request #7775: Factual Data label issue
The "New Factual Data Set with source" menu is now above the simple "New Factual Data Set" menu, but should be below. Andreas Müller
07:18 PM bug #7630 (Closed): blocking registration relations get lost after saving adding a typedesignatio...
solved Wolf-Henning Kusber
02:48 PM bug #7630: blocking registration relations get lost after saving adding a typedesignation to a ne...
this should be fully solved now
Andreas Kohlbecker
07:05 PM bug #7845 (In Progress): NamePopupEditor new Genus button should clear the genus name field in th...
The new popup form shows the preselected rank (species) and selecting Uninominal there is the dropdown OR the new but... Wolf-Henning Kusber
04:33 PM bug #7845: NamePopupEditor new Genus button should clear the genus name field in the new editor
solved, please review Andreas Kohlbecker
04:32 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the n...
Applied in changeset commit:cdm-vaadin|3d093bed95b143473aad52db91c4954bf4398739. Andreas Kohlbecker
01:42 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the n...
Clicking on the new button at the genus field in a NamePopupEditor opens a new NamePopupEditor with the genus name pr... Andreas Kohlbecker
06:44 PM feature request #7063: Improve the area selection wizard for distribution editor
I updated description to refelct our decisions how the selection tree should work Andreas Müller
06:36 PM feature request #7063 (Feedback): Improve the area selection wizard for distribution editor
Andreas Müller
06:12 PM feature request #7063: Improve the area selection wizard for distribution editor
Performance has been improved by preselecting vocabularies in DB prefs or local prefs. Andreas Müller
10:52 AM feature request #7063 (Resolved): Improve the area selection wizard for distribution editor
A lot of work on this has been done in #7793. I put to resolved to check if all issues reported here are resolved now. Andreas Müller
06:37 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
Resources which are still in memory after closing a browser window should be destroyed automatically once the next he... Andreas Kohlbecker
06:08 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
the problem seems mainly to be caused by the `NavigationManagerBean` not releasing the references to `RegistrationWor... Andreas Kohlbecker
04:57 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
after editing in parallel with 3 users for some time and closing all browser tabs afterwards, some spring beans like ... Andreas Kohlbecker
12:47 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
it seems as this is not yet solved. Andreas Kohlbecker
06:07 PM bug #7856: Allow local override for distribution vocabularies
NOTE: currently when using the local preferences and deselecting some areas they are not shown anymore when you next ... Andreas Müller
05:59 PM bug #7856 (Closed): Allow local override for distribution vocabularies
copied from #7235
Currently local override for TaxDistributionEditor areas allows only to further reduce the vocab...
Andreas Müller
06:03 PM feature request #7235: Make available area vocabularies a database preference for TaxEditor distr...
Andreas Müller wrote:
>
> Only "local override" does not yet exist and therefore should the checkbox in DB prefs s...
Andreas Müller
05:08 PM feature request #7235 (Feedback): Make available area vocabularies a database preference for TaxE...
This works fine now. There are open issues with the setting of the local areas to be used. But this is another ticket... Andreas Müller
11:08 AM feature request #7235 (Resolved): Make available area vocabularies a database preference for TaxE...
I guess this is implemented with #7793 so I put to resolved for review Andreas Müller
05:49 PM bug #7855 (Closed): PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE ...
User with role submitter creates a new specimen typedesignation and adds an existing collector for which the submitt... Andreas Kohlbecker
05:29 PM bug #7848 (Resolved): Exceptions for some cdm preference pages
I guess this is fixed with the given commits? Andreas Müller
03:03 PM bug #7848 (Closed): Exceptions for some cdm preference pages
There are NPEs and index exceptions for *ABCD import configuration* and *Nomenclatural Code Admin* Patrick Plitzner
04:52 PM task #7854 (Closed): Open issues in TaxDistributionEditor

* ~~use NAT tables~~
* ~~improve area selection dialog~~ #7063
* remove factual data view, wenn opening distrib...
Andreas Müller
04:11 PM feature request #7502 (Closed): Add further columns to bulk editor
Open issues copied to new tickets. Close this ticket. Andreas Müller
04:11 PM feature request #7502: Add further columns to bulk editor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Question: does NAT support multi-sort? E.g. you want to sort fi...
Andreas Müller
04:08 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > The symbol still switches to label...
Andreas Müller
04:10 PM feature request #7853 (New): Support multi column sort for NAT tables (e.g. in bulk editor)
copied from #7502#note-16 Andreas Müller
04:07 PM bug #7852 (New): NAT table symbols for boolean values change to text if columns are sorted
#7502#note-17 Andreas Müller
04:02 PM bug #7424: right click menu does not show up in name editor
As this is difficult to reproduce I close ticket. If it reoccurs we can reopen. Andreas Müller
04:02 PM bug #7424 (Closed): right click menu does not show up in name editor
PP: KL said this is fixed and discussed fix with me Andreas Müller
11:19 AM bug #7424 (Resolved): right click menu does not show up in name editor
Andreas Müller
11:19 AM bug #7424: right click menu does not show up in name editor
not sure if fully fixed already, however I set to resolved for review. Andreas Müller
04:01 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Can we create a new ticket for the remaining issues and close this one?
Does this ticket need further review from ...
Andreas Müller
03:54 PM bug #7851 (New): [DISCUSS] How to handle connection issues during tasks
If e.g. lazy loading fails any task (e.g. opening term editor) fails just at some undefined moment.
We need to handl...
Andreas Müller
03:44 PM bug #7827 (Feedback): LazyInitializationException when saving term editor (named areas)
removed open issues to new ticket #7850. I think we can close *this* ticket.
I only have a question: why can an LI...
Andreas Müller
01:01 PM bug #7827: LazyInitializationException when saving term editor (named areas)
I also can not reproduce the LIE anymore. However, whenever I move a term or save changes or even when opening E+M se... Andreas Müller
09:35 AM bug #7827 (Resolved): LazyInitializationException when saving term editor (named areas)
I added the named area level to the property path. With this change I could not reproduce this exception. This should... Patrick Plitzner
03:41 PM bug #7850: Further problems with term editor
AM:
Gibts für die MultiRep bzw. das Term Verschiebeproblem schon ein Ticket? Wenn ich ein Area verschiebe wird er ...
Andreas Müller
03:39 PM bug #7850: Further problems with term editor
Added commits from #727 related to this ticket to the ticket. Andreas Müller
03:33 PM bug #7850 (Duplicate): Further problems with term editor
After fixing LIE in #7827 there are further issues with term editor.
* Sometimes when opening or working with ter...
Andreas Müller
03:10 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
AM:
Grundsätzlich ist das Problem nicht ganz trivial, da das Zusammenspiel zwischen Default Werten, geänderten Wer...
Andreas Müller
03:09 PM bug #7849 (Feedback): Improve DB Preferences handling and saving in TaxEditor
Currently it often happens that DB preferences are not (correctly) saved if pressing OK or Apply in DB preferences di... Andreas Müller
03:04 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
if you think it is fixed shouldn't we set it to resolved and keep in 5.4 milestone? So we remember it as being primar... Andreas Müller
02:46 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
this should be fixed mean while according to the examination made for #7824
I am leaving this issue open to be con...
Andreas Kohlbecker
02:56 PM feature request #7660 (Closed): Indicate the row state in a NAT table via symbols
The row state is now indicated via symbol in title cache column. As described above a separate column would improve t... Andreas Müller
02:54 PM feature request #7847 (Closed): Use separate column for row state instead of symbol in titleCache...
copied from #7660#note-6 (description there) Andreas Müller
02:43 PM bug #7824 (Closed): PopupViewRegistration not removing registered views causes memleak
no more remains after editing in popups opened from the registrationworkingset Andreas Kohlbecker
02:38 PM bug #7822 (Duplicate): RegistrationUI potentially causes memory problems or deadlocks
Andreas Kohlbecker
02:02 PM feature request #7820: Add cron job for deleting cdmserver log files after a specified time period
the creation of rolling logs is still very much unreliabale so that working on this issue makes not much sense. Maybe... Andreas Kohlbecker
01:54 PM bug #6383 (Rejected): fatal error on git push: The remote end hung up unexpectedly
This will become irrelevant once we moved completely to github or gitlab.
Andreas Kohlbecker
01:53 PM bug #6257 (Worksforme): incorrect SNAPSHOT version after HFX release in cdm-vaadin and cdm-webapp
this did not occure again since 2 years Andreas Kohlbecker
01:49 PM bug #7783 (Closed): NamePopupEditor new buttons for genus and species
Wolf-Henning Kusber wrote:
> It should be pre-selected as "genus" or "species" respectively.
it works exactly lik...
Andreas Kohlbecker
01:16 PM bug #7783: NamePopupEditor new buttons for genus and species
Correction: Button new exists for genus, a new form is loaded. It should be pre-selected as "genus" or "species" resp... Wolf-Henning Kusber
01:05 PM bug #7783: NamePopupEditor new buttons for genus and species
Button new exists for genus, but seems to be without function (same form reloaded).
Functionallity for genus and spe...
Wolf-Henning Kusber
01:49 PM task #7846 (Closed): PopupEditors show editor context information as 'breadcrumbs' in the header ...
This is important for users not to lose track when opening multiple popups. Andreas Kohlbecker
01:47 PM feature request #7408: [E+M] Support for preferred common names in data portal
This is critical for Euro+Med Portal release Andreas Müller
01:03 PM bug #7835 (Closed): taxonGraph search block implemented
completed Andreas Kohlbecker
12:40 PM bug #7835 (Feedback): taxonGraph search block implemented
Andreas Müller
12:01 PM bug #7835 (Worksforme): taxonGraph search block implemented
Search implemented and functioning. Search result need some time. No user feedback, if a string is not in the system.... Wolf-Henning Kusber
12:38 PM task #7843 (New): blocking registrations can get lost when first TaxonNamePopupEditor with new na...
Consider the following situation:
1. Registration Workingset Editor: user starts creating a new name
1. From the ...
Andreas Kohlbecker
12:03 PM bug #7842 (Closed): TaxonNamePopEditor: adding new name as replaced synonym to name with basionym...
Andreas Kohlbecker
12:03 PM bug #7842 (Resolved): TaxonNamePopEditor: adding new name as replaced synonym to name with basion...
Applied in changeset commit:cdm-vaadin|c320e0fa87d07c13f3744f510c49504adf704f21. Andreas Kohlbecker
12:02 PM bug #7842: TaxonNamePopEditor: adding new name as replaced synonym to name with basionym causes N...
This problem is caused by the code which creates the blocking registrations see #7630 Andreas Kohlbecker
11:26 AM bug #7842 (Closed): TaxonNamePopEditor: adding new name as replaced synonym to name with basionym...
This case is not expected to occur often in real live situations:
A name has a basionym with authorship *A*. Addin...
Andreas Kohlbecker
11:37 AM bug #7723 (Closed): PhycoBank unpublished data must not be visible in Portal
Problem fixed, published records visible, unpublished records not visible. Wolf-Henning Kusber
11:18 AM feature request #7680: Refactor TaxonNodeDetailElement
some work has been done within #7793, I added the commits to *this* ticket.
However, due to the described problem ...
Andreas Müller
11:13 AM feature request #3989 (Resolved): [DISCUSS] Allow defining the vocabularies to be offered in the ...
maybe fixed already, so set to resolved Andreas Müller
11:11 AM bug #7236 (Resolved): Make available distribution status a database preference for TaxEditor dist...
I guess this is resolved with #6159 and #7793, set for review Andreas Müller
11:06 AM feature request #7283 (Resolved): Improvements for alternative identifier search
for review, move open issues to new ticket #7841 Andreas Müller
11:05 AM feature request #7841 (New): identifier search: filtering by identifier types
copied from #7283 Andreas Müller
10:57 AM bug #6159 (Resolved): improve distribution editor in TaxEditor
Setting this to resolved to do review. Open remaining issues ticket if necessary. Distribution will go online with th... Andreas Müller
10:48 AM feature request #7793 (Resolved): Master ticket for E+M editor issues
Set to resolved to do review for current version. Move open issues to follow up ticket. Andreas Müller
10:17 AM feature request #7840 (New): [DISCUSS] Remove authors from "Articles"
For nomenclatural references we do not necessarily need to store the author together with the "article". It is clear ... Andreas Müller
10:03 AM bug #7839 (Duplicate): IJournal should not have author, date published etc.
Check again which parts are allowed for journals. Andreas Müller

10/22/2018

05:18 PM bug #7767 (In Progress): Incorrect handling of secundum detail reference in formatter
**TODO**: remove workaround applied with commit:cdm-dataportal|79f9e857 Andreas Kohlbecker
05:14 PM bug #7729 (New): potential ehcache CacheConfiguration problem
Andreas Kohlbecker
05:11 PM bug #7766 (Closed): Remaining issues for using relationship DTO webservice in portal
this issue seems complete, since #7771 is in it's own ticket. Andreas Kohlbecker
04:37 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
for the coming release I will add the following configuration to edit-int, edit-test and edit-production:
~~~
##
...
Andreas Kohlbecker
02:48 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
we can use the Log4J config provided as
~~~
-Dlog4j.configuration=file:///opt/cdmserver/.cdmLibrary/log4j.proper...
Andreas Kohlbecker
02:45 PM bug #7827: LazyInitializationException when saving term editor (named areas)
I would move this issue to the next milestone because this exception does not happen every time.
The Termeditor ha...
Patrick Plitzner
02:40 PM bug #7827 (Feedback): LazyInitializationException when saving term editor (named areas)
I can't respoduce this reliably Patrick Plitzner
02:06 PM bug #7827 (In Progress): LazyInitializationException when saving term editor (named areas)
Patrick Plitzner
08:31 AM bug #7827 (Resolved): LazyInitializationException when saving term editor (named areas)
I added a property path to the term loading. Then I tried to reproduce the problem but it did not happen to me. Patrick Plitzner
11:14 AM feature request #7838 (Closed): Optimize details view creation for section expansion
commit:taxeditor|ed60b90ee62498a090152019ecec946920feb2a8
commit:taxeditor|9d0d72efc1bb886e62820891ce080d84428052b1
...
Patrick Plitzner
11:10 AM feature request #7838 (Closed): Optimize details view creation for section expansion
Section expansion state should be evaluated at creation time Patrick Plitzner
11:11 AM bug #7814: Section in Name and section in Basionym, usability
this is fixed now, please confirm Andreas Kohlbecker
11:10 AM bug #7831 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when c...
fully solved Andreas Kohlbecker
11:08 AM feature request #7788 (Closed): Registration page shows registration date and office
Andreas Kohlbecker
11:07 AM bug #7777 (Closed): NPE on login attempt after logout
no more NPEs on re-logins Andreas Kohlbecker
09:52 AM feature request #7805 (Duplicate): GfBio Term Search issues
Patrick Plitzner
09:14 AM bug #7835 (Resolved): taxonGraph search block implemented
implementation is complete, please review Andreas Kohlbecker
09:05 AM feature request #7775: Factual Data label issue
The label in the factual data view is now updated when changing sources. But still it is not directly updated in the ... Patrick Plitzner
08:35 AM feature request #7775: Factual Data label issue
Andreas Müller wrote:
> If reference selection dialog is canceled a new description is created, however AND an empty...
Patrick Plitzner
08:55 AM feature request #7791 (Resolved): Visualize the phycobank higher taxon graph
Andreas Kohlbecker
07:58 AM feature request #7776: Add source of descriptive data set to SpecimenDescriptions added to it
@Andreas: A simple code review on the first commit is probably enough if you don't have the time to test it in live a... Patrick Plitzner

10/20/2018

01:23 PM feature request #7793: Master ticket for E+M editor issues
for taxon details view the possibility to disable the sec reference and to remove the sec detail is added to the name... Katja Luther

10/19/2018

05:46 PM bug #7779 (Closed): swagger UI broken after springfox-swagger2 upgrade
works again as expected Andreas Kohlbecker
11:42 AM bug #7779 (Resolved): swagger UI broken after springfox-swagger2 upgrade
Applied in changeset commit:cdmlib|695c2b14af3b70f3cf8b0c33fed45de81060ec13. Andreas Kohlbecker
09:53 AM bug #7779 (In Progress): swagger UI broken after springfox-swagger2 upgrade
the URLs of the static swagger doc needs to be adapted Andreas Kohlbecker
03:04 PM bug #7826 (Closed): NPE after saving groupbulkeditor
works Patrick Plitzner
02:59 PM feature request #7674 (Closed): Show taxon descriptions in character matrix editor
Patrick Plitzner
12:39 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
third issue:
unfortunately you committed all changes to the master branch:
~~~
* 469b75d - Fri, 12 Oct 2018 11...
Andreas Kohlbecker
12:24 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
i found a second issue:
The rolling daily file appender only works if the custom loj4j.properties are defined in t...
Andreas Kohlbecker
12:19 PM bug #7085 (In Progress): cdmserver logfiles getting too big, use DailyRollingFileAppender
The rolled daily log files have a whitespace character, please remove the whitespace from the filenames.
~~~~
-rw...
Andreas Kohlbecker
12:31 PM feature request #7837 (New): Implement export to .docx for feature tree editor
The resulting .docx file should contain the feature tree with each feature indented according to the hierarchy. Patrick Plitzner
10:12 AM bug #7836 (Closed): ClassCastException when invoking cdm light export with wrong selection
Steps to reproduce:
1. Select a FeatureTree in the FeatureTreeEditor (or e.g. a taxon description in the factual d...
Patrick Plitzner
08:59 AM feature request #7345: [E+M] Common name references selectable in TaxEditor
now there is a cdmPreference CommonNameReferencesWithMarker which can be set to true, if the selection dialog should ... Katja Luther

10/18/2018

10:35 PM feature request #7793: Master ticket for E+M editor issues
the following db preferences are not available in admin preference pages yet, but can be added in DB:
* disable mu...
Katja Luther
08:16 PM bug #7779 (Resolved): swagger UI broken after springfox-swagger2 upgrade
ready for review Andreas Kohlbecker
03:11 PM feature request #7834 (Closed): taxonGraph search listing all included names implemented
controller endpoint:
~~~
/registrationDTO/findInTaxonGraph?taxonNameFilter={QUERYTEXT}&pageNumber={PAGEINDEX}'
~...
Andreas Kohlbecker
03:06 PM feature request #7834 (Resolved): taxonGraph search listing all included names implemented
Applied in changeset commit:cdmlib|f37e7436b7a5e7315fea12bf11bddfd41952a254. Andreas Kohlbecker

10/17/2018

09:55 PM task #7795 (Closed): untilis xml DataSets creation without "[NULL]" values
I havn't really tested, just looked at the code. Good we have changed it not. The NULL values are disturbing. Andreas Müller
05:03 PM bug #7835 (Closed): taxonGraph search block implemented
Andreas Kohlbecker
05:02 PM feature request #7834 (Closed): taxonGraph search listing all included names implemented
Andreas Kohlbecker
04:47 PM bug #7833 (Rejected): submitters can access see any registration in any RegistrationWorkingSet
Submitters can access any RegistrationWorkingSet where the registrations are all visible.
Registrations where the su...
Andreas Kohlbecker
04:20 PM bug #7832 (New): rename RegistrationStatus READY to COMPLETE
this change need also be adapted in cdm-vaadin where the `sass` files might also require to be modified accordingly. Andreas Kohlbecker
04:17 PM bug #7831 (Resolved): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when...
Applied in changeset commit:cdm-vaadin|db1db90169123bf1cb0ef824211fc0cdd6c33df0. Andreas Kohlbecker
01:02 PM bug #7831 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when c...
Example:
Species *Navicula bahusiensis* being edited in TaxonNamePopupeditor with mode `VALIDATE_AGAINST_HIGHER_N...
Andreas Kohlbecker
03:55 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> The view configurations dialog does not disable buttons which are not available. Also "Done"...
Patrick Plitzner
03:54 PM feature request #7502: Add further columns to bulk editor
All the rest works very fine and is great new functionality!! Andreas Müller
03:53 PM feature request #7502: Add further columns to bulk editor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > The symbol still switches to label if if one sorts by a "protec...
Andreas Müller
03:53 PM feature request #7502: Add further columns to bulk editor
The view configurations dialog does not disable buttons which are not available. Also "Done" I would relabel to "Clos... Andreas Müller
03:52 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> The symbol still switches to label if if one sorts by a "protected" boolean field.
I have...
Patrick Plitzner
03:49 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> Question: does NAT support multi-sort? E.g. you want to sort first by protected or not prote...
Patrick Plitzner
03:47 PM feature request #7502: Add further columns to bulk editor
et al => et al. Andreas Müller
03:44 PM feature request #7502: Add further columns to bulk editor
Question: does NAT support multi-sort? E.g. you want to sort first by protected or not protected titleCache, second o... Andreas Müller
03:39 PM feature request #7502 (Feedback): Add further columns to bulk editor
The symbol still switches to label if if one sorts by a "protected" boolean field. Andreas Müller
03:08 PM feature request #7345 (Feedback): [E+M] Common name references selectable in TaxEditor
The PreferencePredicate still seems to be missing so I can't review and functionality is not yet there.
If UI impl...
Andreas Müller
02:52 PM feature request #7809: Improve namerelationship handling in editor
It works now if English is chosen as language for representations. I had German installed. Andreas Müller
10:08 AM feature request #7809: Improve namerelationship handling in editor
still not available in nightly Andreas Müller
02:50 PM feature request #3990 (In Progress): [DISCUSS] How to implement citation suggestion to each taxon
Andreas Müller
02:49 PM feature request #3990 (Resolved): [DISCUSS] How to implement citation suggestion to each taxon
Andreas Müller
02:46 PM bug #7792 (Closed): Rendering of context menu of factual data view is super slow
It is much faster now and functionality still seems to work. So we can close the ticket. Andreas Müller
02:35 PM task #2406 (Closed): DeterminationEventElement is lacking references
Yes selecting the name is not so critical for now.
The new function works, ticket can be closed.
There is a mod...
Andreas Müller
02:00 PM bug #7830 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to test...
Andreas Kohlbecker
02:00 PM bug #7830 (Resolved): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to te...
Applied in changeset commit:cdm-vaadin|68cc664b0f005de9c2d20aa0b518074811d90ce9. Andreas Kohlbecker
12:55 PM bug #7830 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to test...
For ranks below species when mode `VALIDATE_AGAINST_HIGHER_NAME_PART` is enabled the "specific epithet" field restric... Andreas Kohlbecker
11:45 AM feature request #2444 (Closed): Disable binom and trinom hybrid flag when epithets are not available
Seems to work Andreas Müller
11:43 AM feature request #7775: Factual Data label issue
If reference selection dialog is canceled a new description is created, however AND an empty source is created.
Bo...
Andreas Müller
11:39 AM feature request #7775 (Feedback): Factual Data label issue
> If a source is added in the details view, and the titleCache is not protected, it should be generated into the labe... Andreas Müller
10:46 AM feature request #7660 (Feedback): Indicate the row state in a NAT table via symbols
This is generally fixed and can be closed. But there are 2 open issues.
* The symbol for "set target" is blue and...
Andreas Müller
10:37 AM feature request #7793: Master ticket for E+M editor issues
Now the New command in Factual Data View is on top, but in parallel we have "New Factual Data Set" and "New Factual D... Andreas Müller
09:54 AM bug #7773 (Closed): when changing rank the hybrid section is empty
Seems to be fixed. Andreas Müller

10/16/2018

06:02 PM bug #7829 (In Progress): Improve deduplication of parsed names and references
Andreas Müller
06:01 PM bug #7829 (In Progress): Improve deduplication of parsed names and references
The default matching strategies are to strict for data name and nom. ref. data created by a parser. Also there are so... Andreas Müller
05:51 PM bug #7828 (In Progress): Remove date published from journals in E+M
>1200 journals from the initial import in 2004 do have a date published. Journals generally should not have a date pu... Andreas Müller
03:22 PM bug #7827 (Closed): LazyInitializationException when saving term editor (named areas)
This happens when dragging a term on at least level 2 to another term on at least level 2
~~~ text
login : admin
...
Katja Luther
02:06 PM bug #7826: NPE after saving groupbulkeditor
please review Katja Luther
02:05 PM bug #7826 (Resolved): NPE after saving groupbulkeditor
Applied in changeset commit:taxeditor|782e447962cac9eef6e2e7f9c1a394ad8657c1c8. Katja Luther
01:38 PM bug #7826 (Closed): NPE after saving groupbulkeditor
~~~ text
!ENTRY org.eclipse.core.jobs 4 2 2018-10-16 13:37:28.658
!MESSAGE An internal error occurred during: "Lade...
Katja Luther
01:36 PM bug #7699: NPE when searching for specimen in bulk editor
I also had it today in the Users Bulkeditor:
~~~
login :
editor version : 5.4.0.201810151448
server : ()
sch...
Andreas Kohlbecker
12:40 PM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
in admin preferences now there is the possibility to define the vocabularies for common name area selection, distribu... Katja Luther
12:38 PM feature request #7283: Improvements for alternative identifier search
the search for identifier and titleCache is implemented as well. Katja Luther
09:19 AM feature request #7809: Improve namerelationship handling in editor
jenkins failed because of download problems, but the nightly build of this night contains the implementation, now. Katja Luther
09:06 AM feature request #7809 (Feedback): Improve namerelationship handling in editor
In yesterday evenings nightly the invers direction still is not available so I can't test. Andreas Müller

10/15/2018

07:08 PM bug #7825 (New): NPE in eu.etaxonomy.taxeditor.bulkeditor.input.sortprovider.GroupNameComparator ...
after editing the Group "Curator" in edit-test/phycobank
~~~
login :
editor version : 5.4.0.201810151448
serve...
Andreas Kohlbecker
04:43 PM feature request #7809 (Resolved): Improve namerelationship handling in editor
please review. I adapted the wizard like it is descriped in ticket description. Maybe the text should be different?? Katja Luther
03:45 PM feature request #7800 (In Progress): Parse preliminary RefDetails
Andreas Müller
03:44 PM feature request #7801 (In Progress): AM: Deduplicate references
Andreas Müller
12:55 PM task #7785: CdmUserHelper caches permission information
Implemented and description updated. Andreas Kohlbecker
12:05 PM task #7785 (Resolved): CdmUserHelper caches permission information
Applied in changeset commit:cdmlib|8bbd4f27e47a00d244480b4f5a01056d415bda27. Andreas Kohlbecker
 

Also available in: Atom

Add picture from clipboard (Maximum size: 40 MB)