Activity
From 09/27/2018 to 10/26/2018
10/26/2018
- 06:24 PM bug #7870 (Closed): RegistrationWorkingsetEditor: Internal error on clicking "new name"
- I added to modifications
* adding the WindowErrorHandler also to the VaadinSession
* clearing the session to wipe... - 01:45 PM bug #7870: RegistrationWorkingsetEditor: Internal error on clicking "new name"
- above sub issue copied to #7874
- 01:42 PM bug #7870: RegistrationWorkingsetEditor: Internal error on clicking "new name"
- AM:
ganz so kritisch ist es glaube ich nicht. Letztlich muss man nur den cache updaten mit dem Cacheupdater. Aller... - 01:29 PM bug #7870: RegistrationWorkingsetEditor: Internal error on clicking "new name"
- The initial problem is cause by the `protectedNomenclaturalTitleCache` flag of the Team being set to `false`. When bi...
- 09:01 AM bug #7870 (Closed): RegistrationWorkingsetEditor: Internal error on clicking "new name"
- Encrypted by a verified device
14:04 als submitter eine neue Referenz angelegt (StartRegistrationView), dann new "C... - 06:16 PM bug #7872 (Worksforme): use firePropertyChange only if the value has changed
- great and agreed!
one hit before closing this as "worksforme", just in case you missed this out so far:
Since j... - 04:03 PM bug #7872 (Resolved): use firePropertyChange only if the value has changed
- If you follow the firePropertyChange call you come to PropertyChangeSupport
~~~ java
public void fireProperty... - 12:19 PM bug #7872 (Worksforme): use firePropertyChange only if the value has changed
- this is an example from `Team` where a `PropertyChangeEvent` is fired even if `this.nomenclaturalTitle.equals(nomenc...
- 05:42 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- please review
- 05:40 PM bug #7874 (Resolved): TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- Applied in changeset commit:cdmlib|cfcf723b6485a38d3b39e4d53696036d212d6d6c.
- 05:39 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- Running the CacheUpdater should fix the issue. But the method `IdentifiableServiceBase.updateTitleCacheForSingleEntit...
- 04:07 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- Andreas Kohlbecker wrote:
> The Problem comes from the Person named "A.M. Monroe" which has been entered in the Taxe... - 02:27 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- The Problem comes from the Person named "A.M. Monroe" which has been entered in the Taxeditor by Henning on 2018-04-2...
- 01:45 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- AM:
ganz so kritisch ist es glaube ich nicht. Letztlich muss man nur den cache updaten mit dem Cacheupdater. Aller... - 01:44 PM bug #7874 (Closed): TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- This issue is quite good explainable by the case examined in #7870#note-1 :
The initial problem is cause by the `p... - 04:39 PM feature request #7640: Update ISO country names where necessary
- Musste heute im PhycoBank Production-System einen Country-Eintrag wieder rausnehmen. Ich wollte den Eintrag "Romania"...
- 04:06 PM feature request #7875 (Closed): Add multiple area selection to descriptive data set editor
- 01:27 PM feature request #7873 (Resolved): Implement copy&paste for feature nodes in feature tree editor
- Applied in changeset commit:taxeditor|f3065796575239dbdc4afab4207bf70d87d72536.
- 01:26 PM feature request #7873 (Closed): Implement copy&paste for feature nodes in feature tree editor
- 12:24 PM task #7866: Phycobank UI further label improvements
- wording also acceptec by Regine
- 09:24 AM feature request #7871 (Resolved): Open character matrix as singleton
- Applied in changeset commit:taxeditor|fcb2dae63a03e03ad65a4b0f2f564a5e002c0582.
- 09:24 AM feature request #7871 (Closed): Open character matrix as singleton
- The character matrix should only be opened once for a descriptive data set
- 09:23 AM feature request #7869 (Resolved): Run gfbio term service requests as background tasks
- 08:43 AM feature request #7869 (Closed): Run gfbio term service requests as background tasks
- 09:20 AM feature request #7868 (Resolved): Allow creating a new vocabulary in vocabulary selection dialog
- Applied in changeset commit:taxeditor|aa95aad0606b24de8df073a2f2614e86ab91718b.
- 08:10 AM feature request #7868 (Closed): Allow creating a new vocabulary in vocabulary selection dialog
10/25/2018
- 07:14 PM bug #7857: Update name relationship type representations and symmetrie
- ~~~ sql
UPDATE DefinedTermBase
SET symmetrical=0
WHERE uuid IN ('049c6358-1094-4765-9fae-c9972a0e7780', '6e23ad4... - 07:11 PM feature request #7434: while importing sequences it should be possible to download fasta file
- Can you please add a category?
- 06:38 PM bug #7867 (Resolved): FieldGroup$BindException: The given field is not part of this FieldBinder in TeamOrPersonField
- this issue is neither reproducible nor comprehensible, I tries to change the code in a way to avoid this issue in fut...
- 06:00 PM bug #7867 (Closed): FieldGroup$BindException: The given field is not part of this FieldBinder in TeamOrPersonField
- [reported by henning]
Testsystem:
http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/537f... - 01:23 PM task #7355 (Closed): TaxonNamePopupEditor: newly created nomenclatural reference should be selected immediately
- works
- 01:17 PM bug #7047 (Closed): Vaadin UI and View scope beans are not always destroyed correctly
- this has been solved by the changes made for #7036
- 01:09 PM bug #7222 (Closed): Phycobank UI improve labels
- Wolf-Henning Kusber wrote:
> Offener ToDo-Text nach Diskussion mit Nick Turland (2018-10-25)
>
> Register a new n... - 11:24 AM bug #7222: Phycobank UI improve labels
- Offener ToDo-Text nach Diskussion mit Nick Turland (2018-10-25)
Register a new name or a new type designation. - 01:08 PM task #7866 (Closed): Phycobank UI further label improvements
- **TODO**
* RegistrationDashboard: "Register a new name or a new type designation." suggested by Henning and Nick T... - 12:33 PM bug #6287 (In Progress): Rolling cdmserver.log file only contains entries from startup phase
- 11:09 AM bug #7855 (Closed): PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permission even if the person was not edited or readonly
- 11:08 AM bug #7855 (Resolved): PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permission even if the person was not edited or readonly
- Applied in changeset commit:cdm-vaadin|db262dfa73bbc4f60e98b397b7986f05eefa6de6.
- 11:03 AM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permission even if the person was not edited or readonly
- my last nights impression on the cause of this problem was misled and thus not correct. The real cause is in the `Per...
- 10:55 AM feature request #7775 (Closed): Factual Data label issue
- remaining tasks have been moved to #7865
- 10:55 AM feature request #7865 (Resolved): Remaining factual data view label issues
- Copied from #7775:
* If a source is added in the details view, and the titleCache is not protected, it should be g... - 10:36 AM bug #7766 (Resolved): Remaining issues for using relationship DTO webservice in portal
- 10:23 AM feature request #7283 (Feedback): Improvements for alternative identifier search
- Do I understand correctly that this functionality is only available for certain references searches? I tested for sea...
- 10:21 AM feature request #7283: Improvements for alternative identifier search
- I still fixed a new NPE: commit aaee4922
- 09:34 AM feature request #7864: Use short forms in cache strategy for DescriptionBase
- upps, just realized this is already implemented.
Only using the short form is still missing. Therefor relabel thi... - 08:53 AM feature request #7864 (New): Use short forms in cache strategy for DescriptionBase
- for how to implement see #7775.
something like "Factual Data from [source] for [taxon/specimen/name].
Use shor... - 08:03 AM feature request #7473: Replace PropertyChangeEvent architecture with e4 event bus in details view
- subtask: Update changed source in description label (#7775#note-11)
10/24/2018
- 11:04 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Patrick Plitzner wrote:
> "Änderungen an ABCD Import werden nicht gespeichert, außer allowOverride, aber auch das wi... - 10:33 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> If the NomenclaturalCode is once set it can not be removed anymore in the DB Pref display ev... - 03:28 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- If the NomenclaturalCode is once set it can not be removed anymore in the DB Pref display even if the Preferences is ...
- 02:56 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- "Änderungen an ABCD Import werden nicht gespeichert, außer allowOverride, aber auch das wird nicht richtig reloaded b...
- 11:19 AM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Das Problem ist aber eher, dass zuviel gespeichert wird.
Wenn man nur den DB Preferences Dialog öffnet und wieder sc... - 08:59 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permission even if the person was not edited or readonly
- Why should changes in type designation update the cache? Does it really update, I mean **change** the value or does i...
- 07:51 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permission even if the person was not edited or readonly
- I will adapt the subject of this issue since it is not adequately describing the root of the problem.
I feel like ... - 07:43 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permission even if the person was not edited or readonly
- the reason for this is that the cache strategy is modifying the `nomenclaturalTitle`
~~~
modified property found... - 06:43 PM bug #7850: Further problems with term editor
- Maybe one problem is the order index. After moving the area gets the highest order index though it is placed as child...
- 06:37 PM bug #7850: Further problems with term editor
- The problem always occurs during the second move. Moving first time works correctly.
- 06:32 PM bug #7850: Further problems with term editor
- Next time when opening term editor Belgium was completely gone, though in the DB everything was ok (vocabulary, paren...
- 06:19 PM bug #7850: Further problems with term editor
- still not yet fully fixed
![](picture357-1.png) - 03:12 PM bug #7850 (Resolved): Further problems with term editor
- 06:22 PM bug #7814 (Closed): Section in Name and section in Basionym, usability
- the status "worksforme" is applied to bug reports which can not be reproduced. In this context it means that there is...
- 05:27 PM bug #7814 (Worksforme): Section in Name and section in Basionym, usability
- Test 2: Neuer Name, neuer Autor in neuer Referenz, mit neuem Journal, ohne Fehler.
Aber: ich habe noch nicht alle ... - 05:01 PM bug #7814: Section in Name and section in Basionym, usability
- Test: New reference, new name, new basionym, new section in new reference - without error
- 05:24 PM task #7785: CdmUserHelper caches permission information
- Sorry, currently I don't have time for review. But if it works for you review is not critical I think.
- 05:10 PM feature request #7793: Master ticket for E+M editor issues
- >DB preference to make all functionality related to multiple classification and reuse taxon support unavailable (exce...
- 05:08 PM feature request #7793: Master ticket for E+M editor issues
- >DB preference to make all functionality related to multiple classification and reuse taxon support unavailable
We... - 04:49 PM feature request #7793: Master ticket for E+M editor issues
- Andreas Müller wrote:
> >add menu items for setting of excluded or unplaced flag
>
> it seems to work with local ... - 04:24 PM feature request #7793: Master ticket for E+M editor issues
- >add menu items for setting of excluded or unplaced flag
it seems to work with local settings only, if one changes... - 04:09 PM feature request #7793 (Feedback): Master ticket for E+M editor issues
- Change "Use checklist perspective" seems to change local settings. Once this is set to true it was impossible for me ...
- 03:27 PM feature request #7695 (Feedback): web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- ... #7863
the last open issue regarding this is mentioned in #7695#note-4
who needs this and will continue the ... - 03:20 PM feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- currently we don't have a web service controller with `/homotypicGroup/` as base path. This would be a requirement fo...
- 03:15 PM feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- Andreas Müller wrote:
> I wonder if we should really require a single name uuid as obligatory input parameter. The s... - 03:22 PM feature request #7863 (New): /homotypicGroup/{uuid}/homotypicGroupTypeDesignationsDTO webservice implemented
- for details see #7695#note-9
- 03:10 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names are created
- ok, all open tasks are copied to new issues: #7862, #7861
the reason why I passed this to you is written in comment... - 03:06 PM task #7862 (Closed): Improve documentation on TaxonGraphHibernateListener and related classes
- the documentation on the TaxonGraphHibernateListener is still rudimentary and need to be improved
copied from #764... - 03:03 PM feature request #7861 (In Progress): TaxonGraphHibernateListener: inject the ITaxonGraphDao into TaxonGraphBeforeTransactionCompleteProcess
- we could think about refactoring the `TaxonGraphHibernateListener` a bit:
Andreas Müller suggested to inject the `... - 02:54 PM bug #7036 (Closed): correctly release vaadin view resources when the browser windows has been closed
- now all spring beans like RegistrationToolbar, RegistrationUI, RegistrationWorkingsetPresenter, NavigationManagerBean...
- 02:53 PM bug #7036 (Resolved): correctly release vaadin view resources when the browser windows has been closed
- Applied in changeset commit:cdm-vaadin|b14494a9c3be6a70f64c4560209ba8d406eb635f.
- 02:31 PM bug #7236: Make available distribution status a database preference for TaxEditor distribution editor
- It looks like the selected status are also written to the local preferences. This is very dangerous because
(1) c... - 01:58 PM bug #7236 (Feedback): Make available distribution status a database preference for TaxEditor distribution editor
- Generally it works.
Only open issue: if you change the status list you have to completely close and open the TaxE... - 02:14 PM feature request #7860 (New): [Master] Remaining E+M editor issues
- this is a follow up ticket for #7793 after release 5.4 for all open issues and some new issues.
Detailsview
* M... - 12:57 PM bug #7859 (Closed): Increase size of CdmPreference.value
- Storing longer term lists (as UUID lists) currently leads to exceptions.
- 12:48 PM bug #7858 (New): names used in the TaxonGraph can not be deleted if the user has no DELETE permission on Taxon
- 12:42 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the new editor
- the uninomial field for genus and higher ranks can be edited again.
- 11:09 AM bug #7222: Phycobank UI improve labels
- #7222#note-15 in Diskussion (2018-10-24)
- 10:26 AM bug #7827 (Closed): LazyInitializationException when saving term editor (named areas)
- 09:28 AM bug #7848 (Closed): Exceptions for some cdm preference pages
- Exception does not show up anymore. As it only appeared in 5.4 nightly I removed target version.
- 09:20 AM feature request #7235 (Resolved): Make available area vocabularies a database preference for TaxEditor distribution editor
- Applied in changeset commit:taxeditor|d4db40709483dba7f8451f64de1db944d0ba694e.
- 08:54 AM feature request #7809: Improve namerelationship handling in editor
- Andreas Müller wrote:
> Works fine and can be closed. Only somehow open issue is that "symmetrical" relationships ar... - 12:00 AM feature request #7809: Improve namerelationship handling in editor
- I will keep this assigned to me to remember to update the symmetric values on our server DBs already and to update re...
- 07:12 AM bug #7844: LoginDialog freezes Taxeditor if no connection can be established
- Andreas Müller wrote:
> This has been reverted due to failing test. Or did we only ignore the test?
>
> How shoul... - 12:55 AM feature request #7810: DB preference to make Specimen editors visible
- Bulk Editor-"ShowFieldUnits in Specimen Editor (list) should be disabled.
However, we need move this to an other pag... - 12:52 AM feature request #7810: DB preference to make Specimen editors visible
- In lokal preferences the "Specimens and FieldUnits" page is now always empty, even if showSpecimen = true. What was t...
- 12:49 AM feature request #7810: DB preference to make Specimen editors visible
- Also it is not yet possible to select "allow override" if specimen are switched off in DB preferences.
- 12:45 AM feature request #7810 (Feedback): DB preference to make Specimen editors visible
- Also we may want to disable the "Derivatives" perspective.
- 12:43 AM feature request #7810: DB preference to make Specimen editors visible
- In Facts View we could remove all Features that need specimen support, or at least remove support for IndividualsAsso...
- 12:38 AM feature request #7810: DB preference to make Specimen editors visible
- In name details view for all names of rank species and below we could remove the type designations section
- 12:37 AM feature request #7810: DB preference to make Specimen editors visible
- In preferences we could disable the Taxonomic-TypeDeignations(Specimen) part.
- 12:34 AM feature request #7810: DB preference to make Specimen editors visible
- TermEditor term types DnaMarker, DeterminationModifier, KindOfUnit can also be disabled (maybe we can implement this ...
- 12:12 AM feature request #7810: DB preference to make Specimen editors visible
- Specimen imports are still shown.
![](picture585-1.png )
Note: this might be easier to handle if we group impor...
10/23/2018
- 11:58 PM feature request #7809 (Feedback): Improve namerelationship handling in editor
- Works fine and can be closed. Only somehow open issue is that "symmetrical" relationships are now shown twice. In gen...
- 08:59 PM feature request #7809 (Resolved): Improve namerelationship handling in editor
- this should be fixed now
- 11:36 PM bug #7857: Update name relationship type representations and symmetrie
- also change "is new combination blocked by" to "has blocking name"
- 11:30 PM bug #7857 (Closed): Update name relationship type representations and symmetrie
- since #7809 it is now possible to store name relationships in both directions.
Many of the direct representations ... - 11:29 PM feature request #7810: DB preference to make Specimen editors visible
- the check for the existence of the preference is needed to check whether the page was opened or not, because the pref...
- 04:08 PM feature request #7810 (Resolved): DB preference to make Specimen editors visible
- Applied in changeset commit:taxeditor|53d9aad00561967e0fbb8e3a87e5c0b2e57251e7.
- 03:24 PM feature request #7810 (Feedback): DB preference to make Specimen editors visible
- 03:24 PM feature request #7810: DB preference to make Specimen editors visible
- Currentyl can't test because preference can not be stored. See also #7849
- 10:46 AM feature request #7810 (Resolved): DB preference to make Specimen editors visible
- I think this was mostly fixed in the master ticket. Put to resolved to do the review if something is still missing. I...
- 07:36 PM bug #7844 (Feedback): LoginDialog freezes Taxeditor if no connection can be established
- This has been reverted due to failing test. Or did we only ignore the test?
How should I test it if feature is sti... - 01:43 PM bug #7844 (Resolved): LoginDialog freezes Taxeditor if no connection can be established
- Applied in changeset commit:taxeditor|a9c45e1e62a5e2b4af8107dba4cb1a27f9f3c076.
- 12:47 PM bug #7844 (Closed): LoginDialog freezes Taxeditor if no connection can be established
- A timeout needs to be implemented
- 07:34 PM feature request #7775: Factual Data label issue
- final task: we should allow to set titleCache to protected, otherwise it is not possible to use user defined labels f...
- 07:33 PM feature request #7775: Factual Data label issue
- Patrick Plitzner wrote:
> The label in the factual data view is now updated when changing sources. But still it is n... - 07:32 PM feature request #7775: Factual Data label issue
- After creating Description it would be nice if the description gets the focus. This way you can also see the attached...
- 07:27 PM feature request #7775: Factual Data label issue
- The "New Factual Data Set with source" menu is now above the simple "New Factual Data Set" menu, but should be below.
- 07:18 PM bug #7630 (Closed): blocking registration relations get lost after saving adding a typedesignation to a newly created "typification only" registration
- solved
- 02:48 PM bug #7630: blocking registration relations get lost after saving adding a typedesignation to a newly created "typification only" registration
- this should be fully solved now
- 07:05 PM bug #7845 (In Progress): NamePopupEditor new Genus button should clear the genus name field in the new editor
- The new popup form shows the preselected rank (species) and selecting Uninominal there is the dropdown OR the new but...
- 04:33 PM bug #7845: NamePopupEditor new Genus button should clear the genus name field in the new editor
- solved, please review
- 04:32 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the new editor
- Applied in changeset commit:cdm-vaadin|3d093bed95b143473aad52db91c4954bf4398739.
- 01:42 PM bug #7845 (Closed): NamePopupEditor new Genus button should clear the genus name field in the new editor
- Clicking on the new button at the genus field in a NamePopupEditor opens a new NamePopupEditor with the genus name pr...
- 06:44 PM feature request #7063: Improve the area selection wizard for distribution editor
- I updated description to refelct our decisions how the selection tree should work
- 06:36 PM feature request #7063 (Feedback): Improve the area selection wizard for distribution editor
- 06:12 PM feature request #7063: Improve the area selection wizard for distribution editor
- Performance has been improved by preselecting vocabularies in DB prefs or local prefs.
- 10:52 AM feature request #7063 (Resolved): Improve the area selection wizard for distribution editor
- A lot of work on this has been done in #7793. I put to resolved to check if all issues reported here are resolved now.
- 06:37 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
- Resources which are still in memory after closing a browser window should be destroyed automatically once the next he...
- 06:08 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
- the problem seems mainly to be caused by the `NavigationManagerBean` not releasing the references to `RegistrationWor...
- 04:57 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
- after editing in parallel with 3 users for some time and closing all browser tabs afterwards, some spring beans like ...
- 12:47 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
- it seems as this is not yet solved.
- 06:07 PM bug #7856: Allow local override for distribution vocabularies
- NOTE: currently when using the local preferences and deselecting some areas they are not shown anymore when you next ...
- 05:59 PM bug #7856 (Closed): Allow local override for distribution vocabularies
- copied from #7235
Currently local override for TaxDistributionEditor areas allows only to further reduce the vocab... - 06:03 PM feature request #7235: Make available area vocabularies a database preference for TaxEditor distribution editor
- Andreas Müller wrote:
>
> Only "local override" does not yet exist and therefore should the checkbox in DB prefs s... - 05:08 PM feature request #7235 (Feedback): Make available area vocabularies a database preference for TaxEditor distribution editor
- This works fine now. There are open issues with the setting of the local areas to be used. But this is another ticket...
- 11:08 AM feature request #7235 (Resolved): Make available area vocabularies a database preference for TaxEditor distribution editor
- I guess this is implemented with #7793 so I put to resolved for review
- 05:49 PM bug #7855 (Closed): PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permission even if the person was not edited or readonly
- User with role submitter creates a new specimen typedesignation and adds an existing collector for which the submitt...
- 05:29 PM bug #7848 (Resolved): Exceptions for some cdm preference pages
- I guess this is fixed with the given commits?
- 03:03 PM bug #7848 (Closed): Exceptions for some cdm preference pages
- There are NPEs and index exceptions for *ABCD import configuration* and *Nomenclatural Code Admin*
- 04:52 PM task #7854 (Closed): Open issues in TaxDistributionEditor
* ~~use NAT tables~~
* ~~improve area selection dialog~~ #7063
* remove factual data view, wenn opening distrib...- 04:11 PM feature request #7502 (Closed): Add further columns to bulk editor
- Open issues copied to new tickets. Close this ticket.
- 04:11 PM feature request #7502: Add further columns to bulk editor
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Question: does NAT support multi-sort? E.g. you want to sort fi... - 04:08 PM feature request #7502: Add further columns to bulk editor
- Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > The symbol still switches to label... - 04:10 PM feature request #7853 (New): Support multi column sort for NAT tables (e.g. in bulk editor)
- copied from #7502#note-16
- 04:07 PM bug #7852 (New): NAT table symbols for boolean values change to text if columns are sorted
- #7502#note-17
- 04:02 PM bug #7424: right click menu does not show up in name editor
- As this is difficult to reproduce I close ticket. If it reoccurs we can reopen.
- 04:02 PM bug #7424 (Closed): right click menu does not show up in name editor
- PP: KL said this is fixed and discussed fix with me
- 11:19 AM bug #7424 (Resolved): right click menu does not show up in name editor
- 11:19 AM bug #7424: right click menu does not show up in name editor
- not sure if fully fixed already, however I set to resolved for review.
- 04:01 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- Can we create a new ticket for the remaining issues and close this one?
Does this ticket need further review from ... - 03:54 PM bug #7851 (New): [DISCUSS] How to handle connection issues during tasks
- If e.g. lazy loading fails any task (e.g. opening term editor) fails just at some undefined moment.
We need to handl... - 03:44 PM bug #7827 (Feedback): LazyInitializationException when saving term editor (named areas)
- removed open issues to new ticket #7850. I think we can close *this* ticket.
I only have a question: why can an LI... - 01:01 PM bug #7827: LazyInitializationException when saving term editor (named areas)
- I also can not reproduce the LIE anymore. However, whenever I move a term or save changes or even when opening E+M se...
- 09:35 AM bug #7827 (Resolved): LazyInitializationException when saving term editor (named areas)
- I added the named area level to the property path. With this change I could not reproduce this exception. This should...
- 03:41 PM bug #7850: Further problems with term editor
- AM:
Gibts für die MultiRep bzw. das Term Verschiebeproblem schon ein Ticket? Wenn ich ein Area verschiebe wird er ... - 03:39 PM bug #7850: Further problems with term editor
- Added commits from #727 related to this ticket to the ticket.
- 03:33 PM bug #7850 (Duplicate): Further problems with term editor
- After fixing LIE in #7827 there are further issues with term editor.
* Sometimes when opening or working with ter... - 03:10 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- AM:
Grundsätzlich ist das Problem nicht ganz trivial, da das Zusammenspiel zwischen Default Werten, geänderten Wer... - 03:09 PM bug #7849 (Closed): Improve DB Preferences handling and saving in TaxEditor
- Currently it often happens that DB preferences are not (correctly) saved if pressing OK or Apply in DB preferences di...
- 03:04 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
- if you think it is fixed shouldn't we set it to resolved and keep in 5.4 milestone? So we remember it as being primar...
- 02:46 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
- this should be fixed mean while according to the examination made for #7824
I am leaving this issue open to be con... - 02:56 PM feature request #7660 (Closed): Indicate the row state in a NAT table via symbols
- The row state is now indicated via symbol in title cache column. As described above a separate column would improve t...
- 02:54 PM feature request #7847 (Closed): Use separate column for row state instead of symbol in titleCache column
- copied from #7660#note-6 (description there)
- 02:43 PM bug #7824 (Closed): PopupViewRegistration not removing registered views causes memleak
- no more remains after editing in popups opened from the registrationworkingset
- 02:38 PM bug #7822 (Duplicate): RegistrationUI potentially causes memory problems or deadlocks
- 02:02 PM feature request #7820: Add cron job for deleting cdmserver log files after a specified time period
- the creation of rolling logs is still very much unreliabale so that working on this issue makes not much sense. Maybe...
- 01:54 PM bug #6383 (Rejected): fatal error on git push: The remote end hung up unexpectedly
- This will become irrelevant once we moved completely to github or gitlab.
- 01:53 PM bug #6257 (Worksforme): incorrect SNAPSHOT version after HFX release in cdm-vaadin and cdm-webapp
- this did not occure again since 2 years
- 01:49 PM bug #7783 (Closed): NamePopupEditor new buttons for genus and species
- Wolf-Henning Kusber wrote:
> It should be pre-selected as "genus" or "species" respectively.
it works exactly lik... - 01:16 PM bug #7783: NamePopupEditor new buttons for genus and species
- Correction: Button new exists for genus, a new form is loaded. It should be pre-selected as "genus" or "species" resp...
- 01:05 PM bug #7783: NamePopupEditor new buttons for genus and species
- Button new exists for genus, but seems to be without function (same form reloaded).
Functionallity for genus and spe... - 01:49 PM task #7846 (Closed): PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar.
- This is important for users not to lose track when opening multiple popups.
- 01:47 PM feature request #7408: [E+M] Support for preferred common names in data portal
- This is critical for Euro+Med Portal release
- 01:03 PM bug #7835 (Closed): taxonGraph search block implemented
- completed
- 12:40 PM bug #7835 (Feedback): taxonGraph search block implemented
- 12:01 PM bug #7835 (Worksforme): taxonGraph search block implemented
- Search implemented and functioning. Search result need some time. No user feedback, if a string is not in the system....
- 12:38 PM task #7843 (New): blocking registrations can get lost when first TaxonNamePopupEditor with new name is not saved
- Consider the following situation:
1. Registration Workingset Editor: user starts creating a new name
1. From the ... - 12:03 PM bug #7842 (Closed): TaxonNamePopEditor: adding new name as replaced synonym to name with basionym causes NonUniqueObjectException
- 12:03 PM bug #7842 (Resolved): TaxonNamePopEditor: adding new name as replaced synonym to name with basionym causes NonUniqueObjectException
- Applied in changeset commit:cdm-vaadin|c320e0fa87d07c13f3744f510c49504adf704f21.
- 12:02 PM bug #7842: TaxonNamePopEditor: adding new name as replaced synonym to name with basionym causes NonUniqueObjectException
- This problem is caused by the code which creates the blocking registrations see #7630
- 11:26 AM bug #7842 (Closed): TaxonNamePopEditor: adding new name as replaced synonym to name with basionym causes NonUniqueObjectException
- This case is not expected to occur often in real live situations:
A name has a basionym with authorship *A*. Addin... - 11:37 AM bug #7723 (Closed): PhycoBank unpublished data must not be visible in Portal
- Problem fixed, published records visible, unpublished records not visible.
- 11:18 AM feature request #7680: Refactor TaxonNodeDetailElement
- some work has been done within #7793, I added the commits to *this* ticket.
However, due to the described problem ... - 11:13 AM feature request #3989 (Resolved): [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
- maybe fixed already, so set to resolved
- 11:11 AM bug #7236 (Resolved): Make available distribution status a database preference for TaxEditor distribution editor
- I guess this is resolved with #6159 and #7793, set for review
- 11:06 AM feature request #7283 (Resolved): Improvements for alternative identifier search
- for review, move open issues to new ticket #7841
- 11:05 AM feature request #7841 (New): identifier search: filtering by identifier types
- copied from #7283
- 10:57 AM bug #6159 (Resolved): improve distribution editor in TaxEditor
- Setting this to resolved to do review. Open remaining issues ticket if necessary. Distribution will go online with th...
- 10:48 AM feature request #7793 (Resolved): Master ticket for E+M editor issues
- Set to resolved to do review for current version. Move open issues to follow up ticket.
- 10:17 AM feature request #7840 (New): [DISCUSS] Remove authors from "Articles"
- For nomenclatural references we do not necessarily need to store the author together with the "article". It is clear ...
- 10:03 AM bug #7839 (Duplicate): IJournal should not have author, date published etc.
- Check again which parts are allowed for journals.
10/22/2018
- 05:18 PM bug #7767 (In Progress): Incorrect handling of secundum detail reference in formatter
- **TODO**: remove workaround applied with commit:cdm-dataportal|79f9e857
- 05:14 PM bug #7729 (New): potential ehcache CacheConfiguration problem
- 05:11 PM bug #7766 (Closed): Remaining issues for using relationship DTO webservice in portal
- this issue seems complete, since #7771 is in it's own ticket.
- 04:37 PM bug #7085: cdmserver logfiles getting too big, use RollingFileAppender
- for the coming release I will add the following configuration to edit-int, edit-test and edit-production:
~~~
##
... - 02:48 PM bug #7085: cdmserver logfiles getting too big, use RollingFileAppender
- we can use the Log4J config provided as
~~~
-Dlog4j.configuration=file:///opt/cdmserver/.cdmLibrary/log4j.proper... - 02:45 PM bug #7827: LazyInitializationException when saving term editor (named areas)
- I would move this issue to the next milestone because this exception does not happen every time.
The Termeditor ha... - 02:40 PM bug #7827 (Feedback): LazyInitializationException when saving term editor (named areas)
- I can't respoduce this reliably
- 02:06 PM bug #7827 (In Progress): LazyInitializationException when saving term editor (named areas)
- 08:31 AM bug #7827 (Resolved): LazyInitializationException when saving term editor (named areas)
- I added a property path to the term loading. Then I tried to reproduce the problem but it did not happen to me.
- 11:14 AM feature request #7838 (Closed): Optimize details view creation for section expansion
- commit:taxeditor|ed60b90ee62498a090152019ecec946920feb2a8
commit:taxeditor|9d0d72efc1bb886e62820891ce080d84428052b1
... - 11:10 AM feature request #7838 (Closed): Optimize details view creation for section expansion
- Section expansion state should be evaluated at creation time
- 11:11 AM bug #7814: Section in Name and section in Basionym, usability
- this is fixed now, please confirm
- 11:10 AM bug #7831 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when changing species to subspecies
- fully solved
- 11:08 AM feature request #7788 (Closed): Registration page shows registration date and office
- 11:07 AM bug #7777 (Closed): NPE on login attempt after logout
- no more NPEs on re-logins
- 09:52 AM feature request #7805 (Duplicate): GfBio Term Search issues
- 09:14 AM bug #7835 (Resolved): taxonGraph search block implemented
- implementation is complete, please review
- 09:05 AM feature request #7775: Factual Data label issue
- The label in the factual data view is now updated when changing sources. But still it is not directly updated in the ...
- 08:35 AM feature request #7775: Factual Data label issue
- Andreas Müller wrote:
> If reference selection dialog is canceled a new description is created, however AND an empty... - 08:55 AM feature request #7791 (Resolved): Visualize the phycobank higher taxon graph
- 07:58 AM feature request #7776: Add source of descriptive data set to SpecimenDescriptions added to it
- @Andreas: A simple code review on the first commit is probably enough if you don't have the time to test it in live a...
10/20/2018
- 01:23 PM feature request #7793: Master ticket for E+M editor issues
- for taxon details view the possibility to disable the sec reference and to remove the sec detail is added to the name...
10/19/2018
- 05:46 PM bug #7779 (Closed): swagger UI broken after springfox-swagger2 upgrade
- works again as expected
- 11:42 AM bug #7779 (Resolved): swagger UI broken after springfox-swagger2 upgrade
- Applied in changeset commit:cdmlib|695c2b14af3b70f3cf8b0c33fed45de81060ec13.
- 09:53 AM bug #7779 (In Progress): swagger UI broken after springfox-swagger2 upgrade
- the URLs of the static swagger doc needs to be adapted
- 03:04 PM bug #7826 (Closed): NPE after saving groupbulkeditor
- works
- 02:59 PM feature request #7674 (Closed): Show taxon descriptions in character matrix editor
- 12:39 PM bug #7085: cdmserver logfiles getting too big, use RollingFileAppender
- third issue:
unfortunately you committed all changes to the master branch:
~~~
* 469b75d - Fri, 12 Oct 2018 11... - 12:24 PM bug #7085: cdmserver logfiles getting too big, use RollingFileAppender
- i found a second issue:
The rolling daily file appender only works if the custom loj4j.properties are defined in t... - 12:19 PM bug #7085 (In Progress): cdmserver logfiles getting too big, use RollingFileAppender
- The rolled daily log files have a whitespace character, please remove the whitespace from the filenames.
~~~~
-rw... - 12:31 PM feature request #7837 (New): Implement export to .docx for feature tree editor
- The resulting .docx file should contain the feature tree with each feature indented according to the hierarchy.
- 10:12 AM bug #7836 (Closed): ClassCastException when invoking cdm light export with wrong selection
- Steps to reproduce:
1. Select a FeatureTree in the FeatureTreeEditor (or e.g. a taxon description in the factual d... - 08:59 AM feature request #7345: [E+M] Common name references selectable in TaxEditor
- now there is a cdmPreference CommonNameReferencesWithMarker which can be set to true, if the selection dialog should ...
10/18/2018
- 10:35 PM feature request #7793: Master ticket for E+M editor issues
- the following db preferences are not available in admin preference pages yet, but can be added in DB:
* disable mu... - 08:16 PM bug #7779 (Resolved): swagger UI broken after springfox-swagger2 upgrade
- ready for review
- 03:11 PM feature request #7834 (Closed): taxonGraph search listing all included names implemented
- controller endpoint:
~~~
/registrationDTO/findInTaxonGraph?taxonNameFilter={QUERYTEXT}&pageNumber={PAGEINDEX}'
~... - 03:06 PM feature request #7834 (Resolved): taxonGraph search listing all included names implemented
- Applied in changeset commit:cdmlib|f37e7436b7a5e7315fea12bf11bddfd41952a254.
10/17/2018
- 09:55 PM task #7795 (Closed): untilis xml DataSets creation without "[NULL]" values
- I havn't really tested, just looked at the code. Good we have changed it not. The NULL values are disturbing.
- 05:03 PM bug #7835 (Closed): taxonGraph search block implemented
- 05:02 PM feature request #7834 (Closed): taxonGraph search listing all included names implemented
- 04:47 PM bug #7833 (Rejected): submitters can access see any registration in any RegistrationWorkingSet
- Submitters can access any RegistrationWorkingSet where the registrations are all visible.
Registrations where the su... - 04:20 PM bug #7832 (New): rename RegistrationStatus READY to COMPLETE
- this change need also be adapted in cdm-vaadin where the `sass` files might also require to be modified accordingly.
- 04:17 PM bug #7831 (Resolved): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when changing species to subspecies
- Applied in changeset commit:cdm-vaadin|db1db90169123bf1cb0ef824211fc0cdd6c33df0.
- 01:02 PM bug #7831 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when changing species to subspecies
- Example:
Species *Navicula bahusiensis* being edited in TaxonNamePopupeditor with mode `VALIDATE_AGAINST_HIGHER_N... - 03:55 PM feature request #7502: Add further columns to bulk editor
- Andreas Müller wrote:
> The view configurations dialog does not disable buttons which are not available. Also "Done"... - 03:54 PM feature request #7502: Add further columns to bulk editor
- All the rest works very fine and is great new functionality!!
- 03:53 PM feature request #7502: Add further columns to bulk editor
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > The symbol still switches to label if if one sorts by a "protec... - 03:53 PM feature request #7502: Add further columns to bulk editor
- The view configurations dialog does not disable buttons which are not available. Also "Done" I would relabel to "Clos...
- 03:52 PM feature request #7502: Add further columns to bulk editor
- Andreas Müller wrote:
> The symbol still switches to label if if one sorts by a "protected" boolean field.
I have... - 03:49 PM feature request #7502: Add further columns to bulk editor
- Andreas Müller wrote:
> Question: does NAT support multi-sort? E.g. you want to sort first by protected or not prote... - 03:47 PM feature request #7502: Add further columns to bulk editor
- et al => et al.
- 03:44 PM feature request #7502: Add further columns to bulk editor
- Question: does NAT support multi-sort? E.g. you want to sort first by protected or not protected titleCache, second o...
- 03:39 PM feature request #7502 (Feedback): Add further columns to bulk editor
- The symbol still switches to label if if one sorts by a "protected" boolean field.
- 03:08 PM feature request #7345 (Feedback): [E+M] Common name references selectable in TaxEditor
- The PreferencePredicate still seems to be missing so I can't review and functionality is not yet there.
If UI impl... - 02:52 PM feature request #7809: Improve namerelationship handling in editor
- It works now if English is chosen as language for representations. I had German installed.
- 10:08 AM feature request #7809: Improve namerelationship handling in editor
- still not available in nightly
- 02:50 PM feature request #3990 (In Progress): [DISCUSS] How to implement citation suggestion to each taxon
- 02:49 PM feature request #3990 (Resolved): [DISCUSS] How to implement citation suggestion to each taxon
- 02:46 PM bug #7792 (Closed): Rendering of context menu of factual data view is super slow
- It is much faster now and functionality still seems to work. So we can close the ticket.
- 02:35 PM task #2406 (Closed): DeterminationEventElement is lacking references
- Yes selecting the name is not so critical for now.
The new function works, ticket can be closed.
There is a mod... - 02:00 PM bug #7830 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to testfield on rank changes
- 02:00 PM bug #7830 (Resolved): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to testfield on rank changes
- Applied in changeset commit:cdm-vaadin|68cc664b0f005de9c2d20aa0b518074811d90ce9.
- 12:55 PM bug #7830 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to testfield on rank changes
- For ranks below species when mode `VALIDATE_AGAINST_HIGHER_NAME_PART` is enabled the "specific epithet" field restric...
- 11:45 AM feature request #2444 (Closed): Disable binom and trinom hybrid flag when epithets are not available
- Seems to work
- 11:43 AM feature request #7775: Factual Data label issue
- If reference selection dialog is canceled a new description is created, however AND an empty source is created.
Bo... - 11:39 AM feature request #7775 (Feedback): Factual Data label issue
- > If a source is added in the details view, and the titleCache is not protected, it should be generated into the labe...
- 10:46 AM feature request #7660 (Feedback): Indicate the row state in a NAT table via symbols
- This is generally fixed and can be closed. But there are 2 open issues.
* The symbol for "set target" is blue and... - 10:37 AM feature request #7793: Master ticket for E+M editor issues
- Now the New command in Factual Data View is on top, but in parallel we have "New Factual Data Set" and "New Factual D...
- 09:54 AM bug #7773 (Closed): when changing rank the hybrid section is empty
- Seems to be fixed.
10/16/2018
- 06:02 PM bug #7829 (In Progress): Improve deduplication of parsed names and references
- 06:01 PM bug #7829 (Closed): Improve deduplication of parsed names and references
- The default matching strategies are to strict for data name and nom. ref. data created by a parser. Also there are so...
- 05:51 PM bug #7828 (In Progress): Remove date published from journals in E+M
- >1200 journals from the initial import in 2004 do have a date published. Journals generally should not have a date pu...
- 03:22 PM bug #7827 (Closed): LazyInitializationException when saving term editor (named areas)
- This happens when dragging a term on at least level 2 to another term on at least level 2
~~~ text
login : admin
... - 02:06 PM bug #7826: NPE after saving groupbulkeditor
- please review
- 02:05 PM bug #7826 (Resolved): NPE after saving groupbulkeditor
- Applied in changeset commit:taxeditor|782e447962cac9eef6e2e7f9c1a394ad8657c1c8.
- 01:38 PM bug #7826 (Closed): NPE after saving groupbulkeditor
- ~~~ text
!ENTRY org.eclipse.core.jobs 4 2 2018-10-16 13:37:28.658
!MESSAGE An internal error occurred during: "Lade... - 01:36 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- I also had it today in the Users Bulkeditor:
~~~
login :
editor version : 5.4.0.201810151448
server : ()
sch... - 12:40 PM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
- in admin preferences now there is the possibility to define the vocabularies for common name area selection, distribu...
- 12:38 PM feature request #7283: Improvements for alternative identifier search
- the search for identifier and titleCache is implemented as well.
- 09:19 AM feature request #7809: Improve namerelationship handling in editor
- jenkins failed because of download problems, but the nightly build of this night contains the implementation, now.
- 09:06 AM feature request #7809 (Feedback): Improve namerelationship handling in editor
- In yesterday evenings nightly the invers direction still is not available so I can't test.
10/15/2018
- 07:08 PM bug #7825 (New): NPE in eu.etaxonomy.taxeditor.bulkeditor.input.sortprovider.GroupNameComparator after editing GrantedAuthorityies of Group
- after editing the Group "Curator" in edit-test/phycobank
~~~
login :
editor version : 5.4.0.201810151448
serve... - 04:43 PM feature request #7809 (Resolved): Improve namerelationship handling in editor
- please review. I adapted the wizard like it is descriped in ticket description. Maybe the text should be different??
- 03:45 PM feature request #7800 (In Progress): Parse preliminary RefDetails
- 03:44 PM feature request #7801 (In Progress): AM: Deduplicate references
- 12:55 PM task #7785: CdmUserHelper caches permission information
- Implemented and description updated.
- 12:05 PM task #7785 (Resolved): CdmUserHelper caches permission information
- Applied in changeset commit:cdmlib|8bbd4f27e47a00d244480b4f5a01056d415bda27.
10/14/2018
- 08:09 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> * the eu.etaxonomy.taxeditor.remoting.cache.ConversationalTransientEntityCacher transform... - 07:45 PM bug #7824 (Resolved): PopupViewRegistration not removing registered views causes memleak
- Applied in changeset commit:cdm-vaadin|bba202394eb654dfbdba5a8e7feeda461635157e.
- 07:16 PM bug #7824 (Closed): PopupViewRegistration not removing registered views causes memleak
- The PopupViewRegistration registers `ApplicationView`s and PopupViews. Alt least the `ApplicationView` are not remove...
- 02:57 PM feature request #7801: AM: Deduplicate references
- Find deduplicated records in CDM
~~~ sql
SELECT osb.id, ref.id, osb.idInSource, osb.idNamespace, ref.refType, ref... - 02:56 PM bug #7823 (In Progress): User Persons are not deduplicated
- 02:55 PM bug #7823 (Closed): User Persons are not deduplicated
- Persons related to users are often the same as they are only for different sec's.
We may want to deduplicate them....
10/12/2018
- 10:43 PM task #7758: Manual cleanup after E+M import
- Clean up Agent duplicates:
~~~ sql
SELECT osb.id, ab.id, ab.DTYPE, osb.idInSource, osb.idNamespace, ab.titleC... - 10:25 PM bug #7814 (Resolved): Section in Name and section in Basionym, usability
- Applied in changeset commit:cdm-vaadin|23cee55fd9f05d189974daa67201c0f552c216d3.
- 06:10 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- now the expected functionality I implemented, but we could think about refactoring the `TaxonGraphHibernateListener` ...
- 04:34 PM bug #7822 (Duplicate): RegistrationUI potentially causes memory problems or deadlocks
- Currently users complain about very slow response time of the edit-production server.
In order to verify the presu... - 01:58 PM bug #7818: TaxonRelationshipsDTOTest leaves test environment in unpredictable state
- > Also the TermLoader has an unloadAllTerms method. We could call this in the AfterClass method, but ONLY if the term...
- 11:15 AM feature request #7821 (Duplicate): Use log4j2 for cdmserver logging to avoid having a separate cron job for deleting log files
- Have a look at:
https://logging.apache.org/log4j/2.x/manual/appenders.html#RollingFileAppender
In this case an ... - 11:06 AM bug #6287 (Closed): Rolling cdmserver.log file only contains entries from startup phase
- This is fixed by fixing #7085
- 11:03 AM bug #7085 (Resolved): cdmserver logfiles getting too big, use RollingFileAppender
- The logging is now configured to daily logging i.e. every day a new log file is generated.
The change was done man... - 11:03 AM feature request #7820 (Rejected): Add cron job for deleting cdmserver log files after a specified time period
- By fixing #7085 the log files are now generated on a daily base. A cron job should delete the old log files, e.g. aft...
- 10:58 AM feature request #7819 (New): Log4j.properties file is not properly packaged by the cdmserver install script
- Changes applied to the log4j.properties file in the cdm-server project resources are not reflected in the installed c...
- 10:24 AM feature request #7793 (In Progress): Master ticket for E+M editor issues
- 09:08 AM task #7796 (In Progress): [CHECK] Handle Bibliography Name Facts correctly
10/11/2018
- 09:39 PM bug #7818: TaxonRelationshipsDTOTest leaves test environment in unpredictable state
- There are multiple possibilities.
The simplest is to add a logger saying that this test should not run as first whi... - 06:30 PM bug #7818 (Feedback): TaxonRelationshipsDTOTest leaves test environment in unpredictable state
- 04:04 PM bug #7818 (Feedback): TaxonRelationshipsDTOTest leaves test environment in unpredictable state
- as stated in #7648#note-14 the `TaxonRelationshipsDTOTest` causes problems for other tests.
e.g.: Running the foll... - 06:39 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- The problem described in #7818 was not the actual cause for the test failing in the full suite, another candidate is ...
- 04:08 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- Since this is not a problem with the `TaxonGraphHibernateListenerTest` I am creating a new issue: #7818
- 03:10 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- After moving the `TaxonGraphHibernateListenerTest` into `cdmlib-services` we are again facing problems with test bein...
- 11:45 AM bug #7817 (Duplicate): Team caches should not show '& al.'
- If a team is fully defined with all members of the team the caches should not show "at al." if the team is larger the...
- 10:14 AM feature request #7799: AM: Parse authorteams
- Useful scripts
~~~ sql
DECLARE @authorId as int;
Set @authorId = 3395
;
SELECT *
FROM Name n INNER JOIN dbo...
10/10/2018
- 01:58 PM feature request #7648 (Feedback): Create taxonrelation to genus or species when subordinate names are created
- The `RunAsAuthenticator` is in cdmlib-service and `TaxonGraphBeforeTransactionCompleteProcess` in cdmlib-persistence....
- 01:49 PM feature request #7648 (In Progress): Create taxonrelation to genus or species when subordinate names are created
- The taxon graph management processes are currently run in with the current authentication, this causes problems if a...
- 12:03 PM bug #7813 (Duplicate): Basionym without journal
- 09:45 AM task #7816 (New): Handle nomStatus references correctly
- In E+M most nomenclatural status have a reference. In most cases it is one of the references 7000000, 7100000, 720000...
- 08:42 AM task #7785: CdmUserHelper caches permission information
- Answer is in the updated description.
10/09/2018
- 06:26 PM task #7785: CdmUserHelper caches permission information
- Can you define what functionality is exactly needed from the CdmTransientEntityCacher and why #7709 needs to be fixed...
- 05:58 PM bug #7222: Phycobank UI improve labels
- To "Start a new registration process either for a name or typification."
Suggestion:
* "Start registering scien... - 05:54 PM bug #7222: Phycobank UI improve labels
- This issue is almost complete, please see the two open TODOs in the issue description.
- 05:51 PM task #7796: [CHECK] Handle Bibliography Name Facts correctly
- ERS: probably not to be imported at all
- 05:40 PM feature request #7815 (New): TaxonNameEditor: Hint user on missing citation detail for nomenclatural reference
- Reference detail, wenn NULL bei Speicherversuch: warning “Please insert the reference page and of figure of the nomen...
- 03:40 PM feature request #7799 (In Progress): AM: Parse authorteams
- 02:00 PM bug #7814: Section in Name and section in Basionym, usability
- Es funktioniert nur die erste Version, die für User etwas fehlerhaft wirkt.
Ich kann bei der Basionym-Referenz mit... - 01:23 PM bug #7814: Section in Name and section in Basionym, usability
- 2. Screenshot sollte zeigen:
You, Q. & Kociolek, J.P. - in You, Q., Kociolek, J.P. & Wang, X., New Gomphoneis Cleve ... - 01:22 PM bug #7814 (Closed): Section in Name and section in Basionym, usability
- Bedienungsfehler möglich, wenn neuer Name und Basionym jeweils eine In-Zitierung haben.
Vorgehen: Referenz eingebe... - 12:55 PM bug #7813 (Duplicate): Basionym without journal
- When a new name has a basionym, the basionym reference can be selected or be new.
If the reference is a new article ...
10/08/2018
- 03:00 PM task #7420 (Closed): Import for higher taxon graph for phycobank
- new ticket for the actual import tasks created: #7811
- 11:21 AM task #7420: Import for higher taxon graph for phycobank
- Ok, can you close the ticket and open a ticket for what ever you stil need?
- 11:04 AM task #7420 (Feedback): Import for higher taxon graph for phycobank
- I reviewed the imported taxon graph relations. The resulting graph exactly matches the expectations.
The implementat... - 08:54 AM task #7420: Import for higher taxon graph for phycobank
- all other data import and data cleaning issues are copied to #7808
- 08:31 AM task #7420: Import for higher taxon graph for phycobank
- Andreas Müller wrote:
> You should check by
>
> ~~~ sql
> SELECT titleCache, count(*) as n
> FROM TaxonName tn... - 02:59 PM task #7811 (In Progress): Import higher classifications
- 02:59 PM task #7811 (Feedback): Import higher classifications
- The following classifications need to be imported using the import created for #7420
* Frey W. 2015: Syllabus of t... - 02:36 PM bug #7777 (Resolved): NPE on login attempt after logout
- Applied in changeset commit:cdm-vaadin|3363dabd63329f2f2fd160f5a6c5107ba10a9d2e.
- 01:30 PM feature request #7810 (In Progress): DB preference to make Specimen editors visible
- 01:29 PM feature request #7810 (Closed): DB preference to make Specimen editors visible
- if the preference is set to false everything concerning specimen should be disabled:
* imports
* Specimen Type... - 01:08 PM feature request #7809 (In Progress): Improve namerelationship handling in editor
- 01:08 PM feature request #7809 (Feedback): Improve namerelationship handling in editor
- copied from #7793:
Namerelationships should be available for both directions in name editor details view.
We sh... - 11:36 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- Andreas Kohlbecker wrote:
> Do you want me to do something about this issue? I think my task was the according imple... - 08:23 AM feature request #3990 (Feedback): [DISCUSS] How to implement citation suggestion to each taxon
- Do you want me to do something about this issue? I think my task was the according implementation in the data-portal.
- 07:57 AM bug #7807 (New): Multiple mobile Usability issues
- The new google webmasters console reports multiple mobile Usability issues:
* Text too small to read
* Viewport n...
10/05/2018
- 06:34 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- implementation complete!
- 12:32 PM bug #3276 (Closed): NPE for "Move Elements" context menu option
- works fine
- 10:14 AM bug #3276: NPE for "Move Elements" context menu option
- The NPE I could not reproduce. The menu entry for move factual data is displayed only for descritions, now.
Why the... - 09:17 AM bug #3276 (Feedback): NPE for "Move Elements" context menu option
- I could not reproduce this exception how described above but there is another one.
Now there is also the context m... - 12:28 PM feature request #7502 (Resolved): Add further columns to bulk editor
- I implemented all of the mentioned properties as columns.
Please check all types of bulk editors. - 08:43 AM feature request #7806 (Resolved): GfBio Term Search issues
10/04/2018
- 09:53 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- "Session is closed!"-problem is solved now.
- 05:44 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- There is a problem when running the test in the maven test suite. The `TaxonGraphHibernateListenerTest` fails when it...
- 07:54 PM bug #6303 (Closed): distribution map is moving too fast
- 03:31 PM bug #6303 (Worksforme): distribution map is moving too fast
- Works for me, thanks!
- 02:23 PM feature request #7438: implement citation suggestion in dataportal
- done! the E+M portal is already configured accordingly
- 02:17 PM feature request #7438 (Resolved): implement citation suggestion in dataportal
- Applied in changeset commit:cdm-dataportal|1cda248cd9db631b3fd3b34c519f85a820283514.
- 11:34 AM feature request #7806 (Closed): GfBio Term Search issues
- * Only use "search" endpoint
* Use interal_only flag
* Allow wildcard (*) search
* Move ontology abbreviation to t... - 11:29 AM feature request #7805 (Duplicate): GfBio Term Search issues
- * use only "search" endpoint and not the "suggest" endpoint
* use "interal_only" ontologies
* Allow '*' wildcard se... - 09:45 AM feature request #7660 (Resolved): Indicate the row state in a NAT table via symbols
- Applied in changeset commit:taxeditor|1f677abd3ea026eab1835f317828d8be5ad6bd65.
10/03/2018
- 12:32 PM feature request #7804 (New): add names of concept relationships as mouse over to synonymy tab
- It is hard to remember meanings of all signs of the concept relations. Would be of great help if the name of the rela...
10/02/2018
- 06:20 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names are created
- please review commit:335d7c23
especially
* `PreferencePredicate.TaxonGraphSecRefUuid` predicate ok?
* `Cdm... - 06:05 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
- All names imported only by occurrences: (n=1435)
~~~ sql
SELECT n.nameId, n.nameCache, n.FullNameCache, n.uuid,... - 08:51 AM feature request #7803 (New): Add possibility to change feature of a fact
- It should be possible to change the feature of a fact.
This could be done by drag & drop into another group of facts...
10/01/2018
- 05:31 PM bug #7676 (Closed): Suchfunktionalität in Registration UI Dateneingabe
- Das war ein Problem mit der Verwechslung von TestProduktions und Test-System, guter Hinweis. Ticket geschlossen.
- 05:25 PM feature request #7802 (Duplicate): Portal-Info when an http-identifier "in preparation" is requested
- Ein heikeler Punkt ist, dass im editorial process, spätestens beim Proof-Reading Gutachter*innen oder Herausgeber*inn...
09/29/2018
- 06:14 PM task #7798 (In Progress): [AM, ERS]: Import (freetext) nameInSource correctly
- 04:35 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
- In einer nicht ganz kleinen Anzahl Fälle, für die der Name NUR als Freitext vorliegt, nicht als Link, wurde ein entsp...
- 03:39 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
- im Berlin Model gibt es ja 2 Felder in die man den Namen, der in der Quelle für eine Verbreitungsangabe verwendet wur...
- 11:40 AM task #7798 (Resolved): [AM, ERS]: Import (freetext) nameInSource correctly
- For occurrence sources and maybe also for common names and facts.
Occurrences:
1. case: freetext exists parall... - 12:32 PM feature request #7801 (Closed): AM: Deduplicate references
- Many references are duplicates. We could try to deduplicate them during import.
TODO:
* check for parameters l... - 12:30 PM feature request #7800 (Closed): Parse preliminary RefDetails
- There are >40000 RefDetails imported as the are preliminary. We could try to parse them during import.
- 12:04 PM feature request #7799 (Resolved): AM: Parse authorteams
- many of them are single persons and also the resulting persons/teams could be parsed probably
- 01:26 AM task #7369: Handle taxonomically valueless taxa correctly
- ERS (2015-08-15):
zum Thema Rubus lässt sich sagen:
die 19 Taxa, die im Baum direkt unter Plantae included sind... - 01:20 AM task #7796: [CHECK] Handle Bibliography Name Facts correctly
- ERS: (2014-11-08)
diese Angaben in eckigen Klammern hinter der eigentlichen nom.ref. stammen aus dem ILDIS-Import.... - 12:48 AM task #7435: Handle also published in correctly
- We keep it as a name fact for now.
- 12:47 AM task #7435 (In Progress): Handle also published in correctly
- Only the remaining 2 comments need to be handled by ERS (see mail). Maybe also some name notes in CDM.
The issue ... - 12:41 AM feature request #7797: Second nomenclatural reference
- ein Einzelfall:
Reynoutria sachalinensis (F. Schmidt) Nakai (7300000): hier steht in den Detail notes
„in T. Mor... - 12:14 AM feature request #7797: Second nomenclatural reference
- Auräumen von E+M:
Daher einige Fragen:
* Können wir bei denen mit Klammern und & die Klammer und das & löschen?...
09/28/2018
- 11:57 PM bug #7456 (Duplicate): E+M: NameFacts von ILDIS Daten
- Duplicates #7435, #7437 and #7796
- 11:48 PM feature request #7797 (New): Second nomenclatural reference
- In E+M and other databases second or even more nomenclatural references exist or are required.
This is currently h... - 08:51 PM task #7435: Handle also published in correctly
- ... achso, und es gibt auch noch einige, die nicht mit „&“ oder „=“ oder „or“ anfangen, wie die meisten anderen. Ist ...
- 08:18 PM task #7796: [CHECK] Handle Bibliography Name Facts correctly
- ~~~ sql
SELECT n.NameCache, n.FullNameCache, n.NomRefFk, pt.PTRefFk, fact.NameFactId, fact.PTNameFk, fact.NameFact, ... - 08:01 PM task #7796 (Resolved): [CHECK] Handle Bibliography Name Facts correctly
- There are 13568 name facts of type "Bibliography" (Cat=3).
These are currently attached to the according names as ... - 06:41 PM feature request #7345: [E+M] Common name references selectable in TaxEditor
- now the selection dialog searches only for references with marker of markerType commonNameReference and when creating...
- 06:15 PM feature request #7440 (Resolved): E+M mark common name reference with according marker
- The markers were imported
- 04:18 PM feature request #6554: The details views are newly created with every change of the focus
- The count cache might be also something for the data portals
- 04:17 PM feature request #6554: The details views are newly created with every change of the focus
- Patrick Plitzner wrote:
> Another bottleneck is
>
> ~~~
> org.hibernate.collection.internal.PersistentSet.size(... - 02:45 PM feature request #6554: The details views are newly created with every change of the focus
- Another bottleneck is
~~~
org.hibernate.collection.internal.PersistentSet.size()
org.hibernate.collection.inter... - 11:20 AM task #7795: untilis xml DataSets creation without "[NULL]" values
- now that we can create datasets without "[NULL]"s we can clean up the test datasets if needed.
If you don't feel lik... - 11:14 AM task #7795 (Resolved): untilis xml DataSets creation without "[NULL]" values
- Applied in changeset commit:cdmlib|a400c76fcbbe92ca47c01798c378a44bf73a3e4d.
- 11:13 AM task #7795 (Closed): untilis xml DataSets creation without "[NULL]" values
- After upgrading to Unitils 3.x it was needed to add "[NULL]" values to the attributed in the xml datasets since the `...
09/27/2018
- 03:47 PM task #7455: [Check] Check all markers for correctnes
- The publish flag (=false) is related to distributions with no status in BM. This is handled now in #2764 and #4822
- 03:44 PM feature request #7063: Improve the area selection wizard for distribution editor
- now the admin can define the vocabulary and in the distribution editor itself the shown areas can be defined.
- 03:05 PM task #7420: Import for higher taxon graph for phycobank
- You should check by
~~~ sql
SELECT titleCache, count(*) as n
FROM TaxonName tn
GROUP BY tn.titleCache
Having ... - 02:59 PM task #7420 (Resolved): Import for higher taxon graph for phycobank
- I did run a new import to test.cdm_phycobank. Please check the results.
One issue I can see is that the existing I... - 02:24 PM task #7420: Import for higher taxon graph for phycobank
- Andreas Kohlbecker wrote:
> Hi Andreas,
>
> a small change of the strategy: All Taxa and TaxonRelations which bel... - 12:17 PM bug #7794 (Closed): Update TaxonNodeWizard
- The taxonnode wizard needs to be updated, the taxon, parent and classification should not be editable and the "open i...
- 11:20 AM feature request #7793 (Closed): Master ticket for E+M editor issues
- Following issues should be solved for E+M migration:
Perspectives:
* start perspective with reduced number of w...
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