Project

General

Profile

Activity

From 09/25/2018 to 10/24/2018

10/24/2018

11:04 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Patrick Plitzner wrote:
> "Änderungen an ABCD Import werden nicht gespeichert, außer allowOverride, aber auch das wi...
Katja Luther
10:33 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Andreas Müller wrote:
> If the NomenclaturalCode is once set it can not be removed anymore in the DB Pref display ev...
Katja Luther
03:28 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
If the NomenclaturalCode is once set it can not be removed anymore in the DB Pref display even if the Preferences is ... Andreas Müller
02:56 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
"Änderungen an ABCD Import werden nicht gespeichert, außer allowOverride, aber auch das wird nicht richtig reloaded b... Patrick Plitzner
11:19 AM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Das Problem ist aber eher, dass zuviel gespeichert wird.
Wenn man nur den DB Preferences Dialog öffnet und wieder sc...
Andreas Müller
11:02 PM Revision 923fbf1e (taxeditor): ref #7849: save ABCD configuration with correct preference subject
Katja Luther
10:30 PM Revision 8559a792 (taxeditor): check for the right preference in checklistEditor Handler
Katja Luther
08:59 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
Why should changes in type designation update the cache? Does it really update, I mean **change** the value or does i... Andreas Müller
07:51 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
I will adapt the subject of this issue since it is not adequately describing the root of the problem.
I feel like ...
Andreas Kohlbecker
07:43 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
the reason for this is that the cache strategy is modifying the `nomenclaturalTitle`
~~~
modified property found...
Andreas Kohlbecker
06:43 PM bug #7850: Further problems with term editor
Maybe one problem is the order index. After moving the area gets the highest order index though it is placed as child... Andreas Müller
06:37 PM bug #7850: Further problems with term editor
The problem always occurs during the second move. Moving first time works correctly. Andreas Müller
06:32 PM bug #7850: Further problems with term editor
Next time when opening term editor Belgium was completely gone, though in the DB everything was ok (vocabulary, paren... Andreas Müller
06:19 PM bug #7850: Further problems with term editor
still not yet fully fixed
![](picture357-1.png)
Andreas Müller
03:12 PM bug #7850 (Resolved): Further problems with term editor
Patrick Plitzner
06:22 PM bug #7814 (Closed): Section in Name and section in Basionym, usability
the status "worksforme" is applied to bug reports which can not be reproduced. In this context it means that there is... Andreas Kohlbecker
05:27 PM bug #7814 (Worksforme): Section in Name and section in Basionym, usability
Test 2: Neuer Name, neuer Autor in neuer Referenz, mit neuem Journal, ohne Fehler.
Aber: ich habe noch nicht alle ...
Wolf-Henning Kusber
05:01 PM bug #7814: Section in Name and section in Basionym, usability
Test: New reference, new name, new basionym, new section in new reference - without error Wolf-Henning Kusber
05:52 PM Revision 986b34c8 (taxeditor): ref #7849 Temporarily removed general DB preferences
Patrick Plitzner
05:24 PM task #7785: CdmUserHelper caches permission information
Sorry, currently I don't have time for review. But if it works for you review is not critical I think. Andreas Müller
05:13 PM Revision bdab9dc8 (taxeditor): shorten parent child rel ref label
Andreas Müller
05:10 PM feature request #7793: Master ticket for E+M editor issues
>DB preference to make all functionality related to multiple classification and reuse taxon support unavailable (exce... Andreas Müller
05:08 PM feature request #7793: Master ticket for E+M editor issues
>DB preference to make all functionality related to multiple classification and reuse taxon support unavailable
We...
Andreas Müller
04:49 PM feature request #7793: Master ticket for E+M editor issues
Andreas Müller wrote:
> >add menu items for setting of excluded or unplaced flag
>
> it seems to work with local ...
Andreas Müller
04:24 PM feature request #7793: Master ticket for E+M editor issues
>add menu items for setting of excluded or unplaced flag
it seems to work with local settings only, if one changes...
Andreas Müller
04:09 PM feature request #7793 (Feedback): Master ticket for E+M editor issues
Change "Use checklist perspective" seems to change local settings. Once this is set to true it was impossible for me ... Andreas Müller
03:27 PM feature request #7695 (Feedback): web service providing compact TypeDesignation representation fo...
... #7863
the last open issue regarding this is mentioned in #7695#note-4
who needs this and will continue the ...
Andreas Kohlbecker
03:20 PM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
currently we don't have a web service controller with `/homotypicGroup/` as base path. This would be a requirement fo... Andreas Kohlbecker
03:15 PM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
Andreas Müller wrote:
> I wonder if we should really require a single name uuid as obligatory input parameter. The s...
Andreas Kohlbecker
03:22 PM feature request #7863 (New): /homotypicGroup/{uuid}/homotypicGroupTypeDesignationsDTO webservice ...
for details see #7695#note-9 Andreas Kohlbecker
03:20 PM Revision 39a72cef (taxeditor): ref #7849 Always show override checkbox in name details admin prefs
Patrick Plitzner
03:12 PM Revision 89cdb669 (taxeditor): ref #7850 Refresh vocabulary when moving terms
Patrick Plitzner
03:10 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names...
ok, all open tasks are copied to new issues: #7860, #7861
the reason why I passed this to you is written in comme...
Andreas Kohlbecker
03:06 PM task #7862 (New): improve documentation on TaxonGraphHibernateListener and related classes
the documentation on the TaxonGraphHibernateListener is still rudimentary and need to be improved
copied from #764...
Andreas Kohlbecker
03:03 PM feature request #7861 (New): TaxonGraphHibernateListener: inject the ITaxonGraphDao into TaxonGra...
we could think about refactoring the `TaxonGraphHibernateListener` a bit:
Andreas Müller suggested to inject the `...
Andreas Kohlbecker
02:54 PM bug #7036 (Closed): correctly release vaadin view resources when the browser windows has been closed
now all spring beans like RegistrationToolbar, RegistrationUI, RegistrationWorkingsetPresenter, NavigationManagerBean... Andreas Kohlbecker
02:53 PM bug #7036 (Resolved): correctly release vaadin view resources when the browser windows has been c...
Applied in changeset commit:cdm-vaadin|b14494a9c3be6a70f64c4560209ba8d406eb635f. Andreas Kohlbecker
02:53 PM Revision b14494a9 (cdm-vaadin): fix #7036 making sure all spring beans are disposed when the vaad...
- RegistrationToolbar, RegistrationUI, RegistrationWorkingsetPresenter, NavigationManagerBean as DisposableBean
- ...
Andreas Kohlbecker
02:52 PM Revision e974354a (taxeditor): ref #7849 Fix potential NPE
Patrick Plitzner
02:31 PM bug #7236: Make available distribution status a database preference for TaxEditor distribution ed...
It looks like the selected status are also written to the local preferences. This is very dangerous because
(1) c...
Andreas Müller
01:58 PM bug #7236 (Feedback): Make available distribution status a database preference for TaxEditor dist...
Generally it works.
Only open issue: if you change the status list you have to completely close and open the TaxE...
Andreas Müller
02:27 PM Revision 0c7f7de7 (taxeditor): ref #4611 i18n for admin preferences
Patrick Plitzner
02:14 PM feature request #7860 (New): [Master] Remaining E+M editor issues
this is a follow up ticket for #7793 after release 5.4 for all open issues and some new issues.
Detailsview
* M...
Andreas Müller
02:05 PM Revision cdad4890 (taxeditor): ref #7849 Set allowOverride to true
Patrick Plitzner
01:31 PM Revision 1af15fb7 (cdmlib): #7859 reverted max size for Pref.value. Test failed, need to check wh...
Andreas Müller
01:16 PM Revision 5e3a2c94 (taxeditor): ref #7849 Set override flag to true if no pref was found
Patrick Plitzner
01:14 PM Revision d3ec20ed (taxeditor): ref #7849 String externalization and label adjustment
Patrick Plitzner
12:58 PM Revision 325c8ebc (cdmlib): #7859 Changed length to 2000. Still need update script
Andreas Müller
12:57 PM bug #7859 (Closed): Increase size of CdmPreference.value
Storing longer term lists (as UUID lists) currently leads to exceptions. Andreas Müller
12:55 PM Revision 532a02bb (cdm-vaadin): ref #7858 removing delete button from name editor to avoid proble...
Andreas Kohlbecker
12:54 PM Revision a7058992 (cdmlib): cleanup
Andreas Müller
12:48 PM bug #7858 (New): names used in the TaxonGraph can not be deleted if the user has no DELETE permis...
Andreas Kohlbecker
12:42 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the n...
the uninomial field for genus and higher ranks can be edited again. Andreas Kohlbecker
12:35 PM Revision a9316ea5 (taxeditor): code cleaning
Patrick Plitzner
12:33 PM Revision 959b2c17 (cdm-vaadin): ref #7830 ref #7814 fixing WeaklyRelatedEntityCombobox reset to t...
Andreas Kohlbecker
12:05 PM Revision 9e4eb709 (taxeditor): ref #7844 Extend timeout to 7000ms
Patrick Plitzner
12:05 PM Revision 41058237 (taxeditor): ref #7844 Enhance error message when connection times out
Patrick Plitzner
11:25 AM Revision f13fa7a2 (taxeditor): check if vocabulary preference page was opened
Katja Luther
11:09 AM bug #7222: Phycobank UI improve labels
#7222#note-15 in Diskussion (2018-10-24) Wolf-Henning Kusber
10:26 AM bug #7827 (Closed): LazyInitializationException when saving term editor (named areas)
Patrick Plitzner
10:08 AM Revision dba801a9 (cdmlib): #7849 set allow override to true as default in cdmlib CdmPreference
Andreas Müller
09:48 AM Revision 446a945a (taxeditor): ref #7775 Change menu order
Patrick Plitzner
09:28 AM bug #7848 (Closed): Exceptions for some cdm preference pages
Exception does not show up anymore. As it only appeared in 5.4 nightly I removed target version. Andreas Müller
09:20 AM feature request #7235 (Resolved): Make available area vocabularies a database preference for TaxE...
Applied in changeset commit:taxeditor|d4db40709483dba7f8451f64de1db944d0ba694e. Patrick Plitzner
09:20 AM Revision d4db4070 (taxeditor): fix #7235 Fix "allowOverride" flag for common name areas DB prefs
Patrick Plitzner
08:54 AM feature request #7809: Improve namerelationship handling in editor
Andreas Müller wrote:
> Works fine and can be closed. Only somehow open issue is that "symmetrical" relationships ar...
Katja Luther
07:57 AM Revision f662104a (taxeditor): ref #7810 Fix setting of specimen admin prefs
Patrick Plitzner
07:56 AM Revision b6c6423a (taxeditor): Comment unused method
Patrick Plitzner
07:12 AM bug #7844: LoginDialog freezes Taxeditor if no connection can be established
Andreas Müller wrote:
> This has been reverted due to failing test. Or did we only ignore the test?
>
> How shoul...
Patrick Plitzner
06:55 AM Revision c4c36f8e (taxeditor): ref #7810 Fix creation of local specimen preferences
Patrick Plitzner

10/23/2018

12:55 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Bulk Editor-"ShowFieldUnits in Specimen Editor (list) should be disabled.
However, we need move this to an other pag...
Andreas Müller
12:52 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In lokal preferences the "Specimens and FieldUnits" page is now always empty, even if showSpecimen = true. What was t... Andreas Müller
12:49 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Also it is not yet possible to select "allow override" if specimen are switched off in DB preferences. Andreas Müller
12:45 AM feature request #7810 (Feedback): DB preference to make all Specimen functionality/menu items inv...
Also we may want to disable the "Derivatives" perspective. Andreas Müller
12:43 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In Facts View we could remove all Features that need specimen support, or at least remove support for IndividualsAsso... Andreas Müller
12:38 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In name details view for all names of rank species and below we could remove the type designations section Andreas Müller
12:37 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In preferences we could disable the Taxonomic-TypeDeignations(Specimen) part. Andreas Müller
12:34 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
TermEditor term types DnaMarker, DeterminationModifier, KindOfUnit can also be disabled (maybe we can implement this ... Andreas Müller
12:12 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Specimen imports are still shown.
![](picture585-1.png )
Note: this might be easier to handle if we group impor...
Andreas Müller
11:29 PM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
the check for the existence of the preference is needed to check whether the page was opened or not, because the pref... Katja Luther
04:08 PM feature request #7810 (Resolved): DB preference to make all Specimen functionality/menu items inv...
Applied in changeset commit:taxeditor|53d9aad00561967e0fbb8e3a87e5c0b2e57251e7. Patrick Plitzner
03:24 PM feature request #7810 (Feedback): DB preference to make all Specimen functionality/menu items inv...
Andreas Müller
03:24 PM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Currentyl can't test because preference can not be stored. See also #7849 Andreas Müller
10:46 AM feature request #7810 (Resolved): DB preference to make all Specimen functionality/menu items inv...
I think this was mostly fixed in the master ticket. Put to resolved to do the review if something is still missing. I... Andreas Müller
12:00 AM feature request #7809: Improve namerelationship handling in editor
I will keep this assigned to me to remember to update the symmetric values on our server DBs already and to update re... Andreas Müller
11:58 PM feature request #7809 (Feedback): Improve namerelationship handling in editor
Works fine and can be closed. Only somehow open issue is that "symmetrical" relationships are now shown twice. In gen... Andreas Müller
08:59 PM feature request #7809 (Resolved): Improve namerelationship handling in editor
this should be fixed now Katja Luther
11:36 PM bug #7857: Update name relationship type representations and symmetrie
also change "is new combination blocked by" to "has blocking name" Andreas Müller
11:30 PM bug #7857 (Closed): Update name relationship type representations and symmetrie
since #7809 it is now possible to store name relationships in both directions.
Many of the direct representations ...
Andreas Müller
11:10 PM Revision 4e6f2196 (taxeditor): fix save of db preferences not available in db before
Katja Luther
07:36 PM bug #7844 (Feedback): LoginDialog freezes Taxeditor if no connection can be established
This has been reverted due to failing test. Or did we only ignore the test?
How should I test it if feature is sti...
Andreas Müller
01:43 PM bug #7844 (Resolved): LoginDialog freezes Taxeditor if no connection can be established
Applied in changeset commit:taxeditor|a9c45e1e62a5e2b4af8107dba4cb1a27f9f3c076. Patrick Plitzner
12:47 PM bug #7844 (Feedback): LoginDialog freezes Taxeditor if no connection can be established
A timeout needs to be implemented Patrick Plitzner
07:34 PM feature request #7775: Factual Data label issue
final task: we should allow to set titleCache to protected, otherwise it is not possible to use user defined labels f... Andreas Müller
07:33 PM feature request #7775: Factual Data label issue
Patrick Plitzner wrote:
> The label in the factual data view is now updated when changing sources. But still it is n...
Andreas Müller
07:32 PM feature request #7775: Factual Data label issue
After creating Description it would be nice if the description gets the focus. This way you can also see the attached... Andreas Müller
07:27 PM feature request #7775: Factual Data label issue
The "New Factual Data Set with source" menu is now above the simple "New Factual Data Set" menu, but should be below. Andreas Müller
07:24 PM Revision abfc6b6e (taxeditor): ref #7063 change labels for dialog help
Andreas Müller
07:18 PM bug #7630 (Closed): blocking registration relations get lost after saving adding a typedesignatio...
solved Wolf-Henning Kusber
02:48 PM bug #7630: blocking registration relations get lost after saving adding a typedesignation to a ne...
this should be fully solved now
Andreas Kohlbecker
07:05 PM bug #7845 (In Progress): NamePopupEditor new Genus button should clear the genus name field in th...
The new popup form shows the preselected rank (species) and selecting Uninominal there is the dropdown OR the new but... Wolf-Henning Kusber
04:33 PM bug #7845: NamePopupEditor new Genus button should clear the genus name field in the new editor
solved, please review Andreas Kohlbecker
04:32 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the n...
Applied in changeset commit:cdm-vaadin|3d093bed95b143473aad52db91c4954bf4398739. Andreas Kohlbecker
01:42 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the n...
Clicking on the new button at the genus field in a NamePopupEditor opens a new NamePopupEditor with the genus name pr... Andreas Kohlbecker
06:44 PM feature request #7063: Improve the area selection wizard for distribution editor
I updated description to refelct our decisions how the selection tree should work Andreas Müller
06:36 PM feature request #7063 (Feedback): Improve the area selection wizard for distribution editor
Andreas Müller
06:12 PM feature request #7063: Improve the area selection wizard for distribution editor
Performance has been improved by preselecting vocabularies in DB prefs or local prefs. Andreas Müller
10:52 AM feature request #7063 (Resolved): Improve the area selection wizard for distribution editor
A lot of work on this has been done in #7793. I put to resolved to check if all issues reported here are resolved now. Andreas Müller
06:37 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
Resources which are still in memory after closing a browser window should be destroyed automatically once the next he... Andreas Kohlbecker
06:08 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
the problem seems mainly to be caused by the `NavigationManagerBean` not releasing the references to `RegistrationWor... Andreas Kohlbecker
04:57 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
after editing in parallel with 3 users for some time and closing all browser tabs afterwards, some spring beans like ... Andreas Kohlbecker
12:47 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
it seems as this is not yet solved. Andreas Kohlbecker
06:30 PM Revision 789f987c (taxeditor): ref #7063 remove "Base -" from area label for parent areas (was no...
Andreas Müller
06:07 PM bug #7856: Allow local override for distribution vocabularies
NOTE: currently when using the local preferences and deselecting some areas they are not shown anymore when you next ... Andreas Müller
05:59 PM bug #7856 (Closed): Allow local override for distribution vocabularies
copied from #7235
Currently local override for TaxDistributionEditor areas allows only to further reduce the vocab...
Andreas Müller
06:03 PM feature request #7235: Make available area vocabularies a database preference for TaxEditor distr...
Andreas Müller wrote:
>
> Only "local override" does not yet exist and therefore should the checkbox in DB prefs s...
Andreas Müller
05:08 PM feature request #7235 (Feedback): Make available area vocabularies a database preference for TaxE...
This works fine now. There are open issues with the setting of the local areas to be used. But this is another ticket... Andreas Müller
11:08 AM feature request #7235 (Resolved): Make available area vocabularies a database preference for TaxE...
I guess this is implemented with #7793 so I put to resolved for review Andreas Müller
05:49 PM bug #7855 (Closed): PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE ...
User with role submitter creates a new specimen typedesignation and adds an existing collector for which the submitt... Andreas Kohlbecker
05:29 PM bug #7848 (Resolved): Exceptions for some cdm preference pages
I guess this is fixed with the given commits? Andreas Müller
03:03 PM bug #7848 (Closed): Exceptions for some cdm preference pages
There are NPEs and index exceptions for *ABCD import configuration* and *Nomenclatural Code Admin* Patrick Plitzner
05:25 PM Revision d909dc2b (cdm-vaadin): removin unused initstrategy
Andreas Kohlbecker
05:21 PM Revision 925bbb39 (taxeditor): ref #7063 change label for distribution area selection button
Andreas Müller
04:52 PM task #7854 (Closed): Open issues in TaxDistributionEditor

* ~~use NAT tables~~
* ~~improve area selection dialog~~ #7063
* remove factual data view, wenn opening distrib...
Andreas Müller
04:32 PM Revision 3d093bed (cdm-vaadin): fix #7845 new genus or species: setting value of genus or spec. e...
Andreas Kohlbecker
04:11 PM feature request #7502 (Closed): Add further columns to bulk editor
Open issues copied to new tickets. Close this ticket. Andreas Müller
04:11 PM feature request #7502: Add further columns to bulk editor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Question: does NAT support multi-sort? E.g. you want to sort fi...
Andreas Müller
04:08 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > The symbol still switches to label...
Andreas Müller
04:10 PM feature request #7853 (New): Support multi column sort for NAT tables (e.g. in bulk editor)
copied from #7502#note-16 Andreas Müller
04:08 PM Revision 53d9aad0 (taxeditor): fix #7810 Fix saving of specimen DB preferences
- failed to save when initally no preferences were set Patrick Plitzner
04:07 PM bug #7852 (New): NAT table symbols for boolean values change to text if columns are sorted
#7502#note-17 Andreas Müller
04:02 PM bug #7424: right click menu does not show up in name editor
As this is difficult to reproduce I close ticket. If it reoccurs we can reopen. Andreas Müller
04:02 PM bug #7424 (Closed): right click menu does not show up in name editor
PP: KL said this is fixed and discussed fix with me Andreas Müller
11:19 AM bug #7424 (Resolved): right click menu does not show up in name editor
Andreas Müller
11:19 AM bug #7424: right click menu does not show up in name editor
not sure if fully fixed already, however I set to resolved for review. Andreas Müller
04:01 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Can we create a new ticket for the remaining issues and close this one?
Does this ticket need further review from ...
Andreas Müller
03:54 PM bug #7851 (New): [DISCUSS] How to handle connection issues during tasks
If e.g. lazy loading fails any task (e.g. opening term editor) fails just at some undefined moment.
We need to handl...
Andreas Müller
03:44 PM bug #7827 (Feedback): LazyInitializationException when saving term editor (named areas)
removed open issues to new ticket #7850. I think we can close *this* ticket.
I only have a question: why can an LI...
Andreas Müller
01:01 PM bug #7827: LazyInitializationException when saving term editor (named areas)
I also can not reproduce the LIE anymore. However, whenever I move a term or save changes or even when opening E+M se... Andreas Müller
09:35 AM bug #7827 (Resolved): LazyInitializationException when saving term editor (named areas)
I added the named area level to the property path. With this change I could not reproduce this exception. This should... Patrick Plitzner
03:41 PM bug #7850: Further problems with term editor
AM:
Gibts für die MultiRep bzw. das Term Verschiebeproblem schon ein Ticket? Wenn ich ein Area verschiebe wird er ...
Andreas Müller
03:39 PM bug #7850: Further problems with term editor
Added commits from #727 related to this ticket to the ticket. Andreas Müller
03:33 PM bug #7850 (Duplicate): Further problems with term editor
After fixing LIE in #7827 there are further issues with term editor.
* Sometimes when opening or working with ter...
Andreas Müller
03:40 PM Revision 5d47cf79 (taxeditor): ref #7844 Filter out "localhost" cdm server in ping test
Patrick Plitzner
03:24 PM Revision 6f9a92e5 (taxeditor): ref #7844 Close http client after getting info
Patrick Plitzner
03:22 PM Revision bba916c9 (taxeditor): ref #7844 Close socket after ping
Patrick Plitzner
03:10 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
AM:
Grundsätzlich ist das Problem nicht ganz trivial, da das Zusammenspiel zwischen Default Werten, geänderten Wer...
Andreas Müller
03:09 PM bug #7849 (Feedback): Improve DB Preferences handling and saving in TaxEditor
Currently it often happens that DB preferences are not (correctly) saved if pressing OK or Apply in DB preferences di... Andreas Müller
03:07 PM Revision ebeb81f5 (taxeditor): ref #7848 Fix NPE
Patrick Plitzner
03:04 PM Revision 06738419 (taxeditor): ref #7848 Fix index out of bounds exception
Patrick Plitzner
03:04 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
if you think it is fixed shouldn't we set it to resolved and keep in 5.4 milestone? So we remember it as being primar... Andreas Müller
02:46 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
this should be fixed mean while according to the examination made for #7824
I am leaving this issue open to be con...
Andreas Kohlbecker
02:56 PM feature request #7660 (Closed): Indicate the row state in a NAT table via symbols
The row state is now indicated via symbol in title cache column. As described above a separate column would improve t... Andreas Müller
02:54 PM feature request #7847 (Closed): Use separate column for row state instead of symbol in titleCache...
copied from #7660#note-6 (description there) Andreas Müller
02:43 PM bug #7824 (Closed): PopupViewRegistration not removing registered views causes memleak
no more remains after editing in popups opened from the registrationworkingset Andreas Kohlbecker
02:38 PM bug #7822 (Duplicate): RegistrationUI potentially causes memory problems or deadlocks
Andreas Kohlbecker
02:02 PM feature request #7820: Add cron job for deleting cdmserver log files after a specified time period
the creation of rolling logs is still very much unreliabale so that working on this issue makes not much sense. Maybe... Andreas Kohlbecker
01:54 PM bug #6383 (Rejected): fatal error on git push: The remote end hung up unexpectedly
This will become irrelevant once we moved completely to github or gitlab.
Andreas Kohlbecker
01:53 PM bug #6257 (Worksforme): incorrect SNAPSHOT version after HFX release in cdm-vaadin and cdm-webapp
this did not occure again since 2 years Andreas Kohlbecker
01:49 PM bug #7783 (Closed): NamePopupEditor new buttons for genus and species
Wolf-Henning Kusber wrote:
> It should be pre-selected as "genus" or "species" respectively.
it works exactly lik...
Andreas Kohlbecker
01:16 PM bug #7783: NamePopupEditor new buttons for genus and species
Correction: Button new exists for genus, a new form is loaded. It should be pre-selected as "genus" or "species" resp... Wolf-Henning Kusber
01:05 PM bug #7783: NamePopupEditor new buttons for genus and species
Button new exists for genus, but seems to be without function (same form reloaded).
Functionallity for genus and spe...
Wolf-Henning Kusber
01:49 PM task #7846 (Closed): PopupEditors show editor context information as 'breadcrumbs' in the header ...
This is important for users not to lose track when opening multiple popups. Andreas Kohlbecker
01:47 PM feature request #7408: [E+M] Support for preferred common names in data portal
This is critical for Euro+Med Portal release Andreas Müller
01:43 PM Revision a9c45e1e (taxeditor): fix #7844 Add timeout to login dialog
Patrick Plitzner
01:03 PM bug #7835 (Closed): taxonGraph search block implemented
completed Andreas Kohlbecker
12:40 PM bug #7835 (Feedback): taxonGraph search block implemented
Andreas Müller
12:01 PM bug #7835 (Worksforme): taxonGraph search block implemented
Search implemented and functioning. Search result need some time. No user feedback, if a string is not in the system.... Wolf-Henning Kusber
01:02 PM Revision 0b494565 (cdm-dataportal): ref #7835 adding 'no results found' to registration search re...
Andreas Kohlbecker
12:38 PM task #7843 (New): blocking registrations can get lost when first TaxonNamePopupEditor with new na...
Consider the following situation:
1. Registration Workingset Editor: user starts creating a new name
1. From the ...
Andreas Kohlbecker
12:03 PM bug #7842 (Closed): TaxonNamePopEditor: adding new name as replaced synonym to name with basionym...
Andreas Kohlbecker
12:03 PM bug #7842 (Resolved): TaxonNamePopEditor: adding new name as replaced synonym to name with basion...
Applied in changeset commit:cdm-vaadin|c320e0fa87d07c13f3744f510c49504adf704f21. Andreas Kohlbecker
12:02 PM bug #7842: TaxonNamePopEditor: adding new name as replaced synonym to name with basionym causes N...
This problem is caused by the code which creates the blocking registrations see #7630 Andreas Kohlbecker
11:26 AM bug #7842 (Closed): TaxonNamePopEditor: adding new name as replaced synonym to name with basionym...
This case is not expected to occur often in real live situations:
A name has a basionym with authorship *A*. Addin...
Andreas Kohlbecker
12:03 PM Revision c320e0fa (cdm-vaadin): fix #7842 reloading registration before adding blocking registrat...
Andreas Kohlbecker
11:41 AM Revision f57aebc4 (cdmlib): ref #7831 using uuids in findTaxonNameParts() methods as name exclude...
Andreas Kohlbecker
11:37 AM bug #7723 (Closed): PhycoBank unpublished data must not be visible in Portal
Problem fixed, published records visible, unpublished records not visible. Wolf-Henning Kusber
11:18 AM feature request #7680: Refactor TaxonNodeDetailElement
some work has been done within #7793, I added the commits to *this* ticket.
However, due to the described problem ...
Andreas Müller
11:15 AM Revision d02788a3 (cdm-vaadin): ref #7630 fixing creation of blocking registrations realted to ne...
Andreas Kohlbecker
11:13 AM feature request #3989 (Resolved): [DISCUSS] Allow defining the vocabularies to be offered in the ...
maybe fixed already, so set to resolved Andreas Müller
11:11 AM bug #7236 (Resolved): Make available distribution status a database preference for TaxEditor dist...
I guess this is resolved with #6159 and #7793, set for review Andreas Müller
11:06 AM feature request #7283 (Resolved): Improvements for alternative identifier search
for review, move open issues to new ticket #7841 Andreas Müller
11:05 AM feature request #7841 (New): identifier search: filtering by identifier types
copied from #7283 Andreas Müller
10:57 AM bug #6159 (Resolved): improve distribution editor in TaxEditor
Setting this to resolved to do review. Open remaining issues ticket if necessary. Distribution will go online with th... Andreas Müller
10:48 AM feature request #7793 (Resolved): Master ticket for E+M editor issues
Set to resolved to do review for current version. Move open issues to follow up ticket. Andreas Müller
10:17 AM feature request #7840 (New): [DISCUSS] Remove authors from "Articles"
For nomenclatural references we do not necessarily need to store the author together with the "article". It is clear ... Andreas Müller
10:07 AM Revision 1f5b408c (taxeditor): ref #7827 Code cleanup
Patrick Plitzner
10:04 AM Revision 0bfb1b18 (taxeditor): ref #7827 Also remove generalizationOf if term is moved
Patrick Plitzner
10:04 AM Revision 3c6e3303 (taxeditor): ref #7827 Fix term/distribution content provider
- Remove accidental merging of "includes" set into "eneralizationOf"
set
Patrick Plitzner
10:03 AM bug #7839 (Duplicate): IJournal should not have author, date published etc.
Check again which parts are allowed for journals. Andreas Müller
09:36 AM Revision c0292658 (taxeditor): ref #7827 code cleaning
Patrick Plitzner
09:36 AM Revision 602d39cf (taxeditor): ref #7827 Extend property path to NamedAreaLevel
Patrick Plitzner
06:42 AM Revision f808cb88 (taxeditor): ref #7809: check if inverse representation is null instead of label
Katja Luther

10/22/2018

05:40 PM Revision 2ac69f0c (cdmlib): ref #7831 using uuids in findTaxonNameParts() methods as name exclude...
Andreas Kohlbecker
05:18 PM bug #7767 (In Progress): Incorrect handling of secundum detail reference in formatter
**TODO**: remove workaround applied with commit:cdm-dataportal|79f9e857 Andreas Kohlbecker
05:14 PM bug #7729 (New): potential ehcache CacheConfiguration problem
Andreas Kohlbecker
05:11 PM bug #7766 (Closed): Remaining issues for using relationship DTO webservice in portal
this issue seems complete, since #7771 is in it's own ticket. Andreas Kohlbecker
05:06 PM Revision aec3c7b7 (cdmlib): ref #7791 adding rank order index to TaxonGraphNodeDTO
Andreas Kohlbecker
05:05 PM Revision 876970d9 (cdmlib): ref #7834 bugfix: returning empty page when no name matches
Andreas Kohlbecker
04:37 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
for the coming release I will add the following configuration to edit-int, edit-test and edit-production:
~~~
##
...
Andreas Kohlbecker
02:48 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
we can use the Log4J config provided as
~~~
-Dlog4j.configuration=file:///opt/cdmserver/.cdmLibrary/log4j.proper...
Andreas Kohlbecker
02:45 PM bug #7827: LazyInitializationException when saving term editor (named areas)
I would move this issue to the next milestone because this exception does not happen every time.
The Termeditor ha...
Patrick Plitzner
02:40 PM bug #7827 (Feedback): LazyInitializationException when saving term editor (named areas)
I can't respoduce this reliably Patrick Plitzner
02:06 PM bug #7827 (In Progress): LazyInitializationException when saving term editor (named areas)
Patrick Plitzner
08:31 AM bug #7827 (Resolved): LazyInitializationException when saving term editor (named areas)
I added a property path to the term loading. Then I tried to reproduce the problem but it did not happen to me. Patrick Plitzner
02:41 PM Revision bb431d84 (cdm-server): ref #7085 changing logging initialization for more consistent log...
Andreas Kohlbecker
01:09 PM Revision a77e70cf (taxeditor): ref #7806 Add timeout to web requests
Patrick Plitzner
12:31 PM Revision bd3e9107 (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner
12:30 PM Revision 4c8b61dd (taxeditor): ref #7806 Change search syntax
Patrick Plitzner
11:14 AM feature request #7838 (Closed): Optimize details view creation for section expansion
commit:taxeditor|ed60b90ee62498a090152019ecec946920feb2a8
commit:taxeditor|9d0d72efc1bb886e62820891ce080d84428052b1
...
Patrick Plitzner
11:10 AM feature request #7838 (Closed): Optimize details view creation for section expansion
Section expansion state should be evaluated at creation time Patrick Plitzner
11:11 AM bug #7814: Section in Name and section in Basionym, usability
this is fixed now, please confirm Andreas Kohlbecker
11:10 AM bug #7831 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when c...
fully solved Andreas Kohlbecker
11:08 AM feature request #7788 (Closed): Registration page shows registration date and office
Andreas Kohlbecker
11:07 AM bug #7777 (Closed): NPE on login attempt after logout
no more NPEs on re-logins Andreas Kohlbecker
09:52 AM feature request #7805 (Duplicate): GfBio Term Search issues
Patrick Plitzner
09:50 AM Revision edd8f8c8 (taxeditor): Refresh selection dialog after widget creation to evaluate button ...
Patrick Plitzner
09:14 AM bug #7835 (Resolved): taxonGraph search block implemented
implementation is complete, please review Andreas Kohlbecker
09:05 AM feature request #7775: Factual Data label issue
The label in the factual data view is now updated when changing sources. But still it is not directly updated in the ... Patrick Plitzner
08:35 AM feature request #7775: Factual Data label issue
Andreas Müller wrote:
> If reference selection dialog is canceled a new description is created, however AND an empty...
Patrick Plitzner
09:03 AM Revision c559d0b4 (taxeditor): ref #7775 Update label when changing sources
Patrick Plitzner
08:55 AM feature request #7791 (Resolved): Visualize the phycobank higher taxon graph
Andreas Kohlbecker
08:34 AM Revision a347d48a (taxeditor): ref #7775 Canceling reference selection does not create a description
Patrick Plitzner
08:29 AM Revision b32ea08b (taxeditor): ref #7827 Add property path to term loading in term editor
Patrick Plitzner
08:25 AM Revision b0ad8fba (taxeditor): i18n + code clean up
Patrick Plitzner
08:04 AM Revision 4d231867 (taxeditor): Remove misplaced <definition> tag in plugin extensions
Patrick Plitzner
07:58 AM feature request #7776: Add source of descriptive data set to SpecimenDescriptions added to it
@Andreas: A simple code review on the first commit is probably enough if you don't have the time to test it in live a... Patrick Plitzner
07:52 AM Revision dc6c8364 (cdm-server): ref #7085 Remove whitespace in log file time stamp
Patrick Plitzner

10/20/2018

01:23 PM feature request #7793: Master ticket for E+M editor issues
for taxon details view the possibility to disable the sec reference and to remove the sec detail is added to the name... Katja Luther
01:07 PM Revision 6fa5c755 (taxeditor): ref #7793: add possibility to disable sec and do not show sec details
Katja Luther

10/19/2018

11:25 PM Revision 62306db3 (taxeditor): ref #7793: fix named area and commonNameArea selection filter
Katja Luther
09:13 PM Revision e10f18ed (taxeditor): ref #6159:dirty flag only if status has changed in distribution ed...
Katja Luther
09:01 PM Revision b40f38ec (taxeditor): fix distribution editor label for columns and long label for status
Katja Luther
06:03 PM Revision 4670ff1d (cdmlib): ref #7834 avoiding NPE in case of names which are not in the graph
Andreas Kohlbecker
05:47 PM Revision b18d70f6 (cdm-dataportal): ref #7835 adding registration search block combining filter a...
Andreas Kohlbecker
05:46 PM bug #7779 (Closed): swagger UI broken after springfox-swagger2 upgrade
works again as expected Andreas Kohlbecker
11:42 AM bug #7779 (Resolved): swagger UI broken after springfox-swagger2 upgrade
Applied in changeset commit:cdmlib|695c2b14af3b70f3cf8b0c33fed45de81060ec13. Andreas Kohlbecker
09:53 AM bug #7779 (In Progress): swagger UI broken after springfox-swagger2 upgrade
the URLs of the static swagger doc needs to be adapted Andreas Kohlbecker
03:54 PM Revision ca5c272c (cdm-server): ref #7085 Adjust log path
Patrick Plitzner
03:54 PM Revision 3aae2857 (cdm-server): ref #7085 Set logging to daily rollover
Patrick Plitzner
03:54 PM Revision 045673ca (cdm-server): ref #7085 Adjust log path
Patrick Plitzner
03:54 PM Revision 04c948d8 (cdm-server): Revert "ref #7085 Use DailyRollingFileAppender (in code)"
This reverts commit 02ef1e472669c30153c94f27084bde7e85e9482b. Patrick Plitzner
03:53 PM Revision cf681ac9 (cdm-server): ref #7085 Use DailyRollingFileAppender (in code)
Patrick Plitzner
03:53 PM Revision 3775575b (cdm-server): ref #7085 Use DailyRollingFileAppender to generate one log per day
Patrick Plitzner
03:04 PM bug #7826 (Closed): NPE after saving groupbulkeditor
works Patrick Plitzner
02:59 PM feature request #7674 (Closed): Show taxon descriptions in character matrix editor
Patrick Plitzner
02:27 PM Revision c6997339 (taxeditor): Set dirty flag to false when closing checklist editor
Patrick Plitzner
02:11 PM Revision 45c989af (taxeditor): truncate distribution string
Andreas Müller
01:44 PM Revision 72937d27 (cdmlib): fix #7779 fixing missing file extension in StaticSwaggerApiDoc contro...
Andreas Kohlbecker
01:29 PM Revision ac22c576 (taxeditor): Use titleCache, not abbrev title for Distribution Sources
Andreas Müller
01:17 PM Revision 6df87ada (taxeditor): fix NPE in DistributionEditor source status
Andreas Müller
12:53 PM Revision fccd196f (taxeditor): handle empty symbol for status in distribution editor
Katja Luther
12:40 PM Revision 09ce7653 (taxeditor): distribution editor local preference is available if no db preference
Katja Luther
12:39 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
third issue:
unfortunately you committed all changes to the master branch:
~~~
* 469b75d - Fri, 12 Oct 2018 11...
Andreas Kohlbecker
12:24 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
i found a second issue:
The rolling daily file appender only works if the custom loj4j.properties are defined in t...
Andreas Kohlbecker
12:19 PM bug #7085 (In Progress): cdmserver logfiles getting too big, use DailyRollingFileAppender
The rolled daily log files have a whitespace character, please remove the whitespace from the filenames.
~~~~
-rw...
Andreas Kohlbecker
12:34 PM Revision c92093d1 (taxeditor): ref #7837 Use .docx export in feature tree editor
Patrick Plitzner
12:33 PM Revision ecc9026b (cdmlib): ref #7837 Implement .docx (Word) export
Patrick Plitzner
12:32 PM Revision d9172f65 (cdmlib): ref #7837 Add org.apache.poi.ooxml-schemas to pom.xml
Patrick Plitzner
12:31 PM feature request #7837 (New): Implement export to .docx for feature tree editor
The resulting .docx file should contain the feature tree with each feature indented according to the hierarchy. Patrick Plitzner
11:59 AM Revision 566e18a2 (taxeditor): presenceAbsence terms in distribution editor are sorted, labels in...
Katja Luther
11:55 AM Revision 5195ddf2 (cdm-dataportal): ref #7835 minor fix for front page
Andreas Kohlbecker
11:42 AM Revision 695c2b14 (cdmlib): fix #7779 adapting the creation delivery of the static swagger doc to...
Andreas Kohlbecker
11:23 AM Revision d7936791 (taxeditor): do not save cdm preference which are not changed
Katja Luther
11:16 AM Revision f15b2642 (taxeditor): do not save cdm preference which are not changed
Katja Luther
11:03 AM Revision 4b3e5e40 (taxeditor): Labels for Area Selection updated
Andreas Müller
10:32 AM Revision 3ff7f19c (taxeditor): set preferences with missing db preference to default value
Katja Luther
10:12 AM bug #7836 (Closed): ClassCastException when invoking cdm light export with wrong selection
Steps to reproduce:
1. Select a FeatureTree in the FeatureTreeEditor (or e.g. a taxon description in the factual d...
Patrick Plitzner
10:11 AM Revision 36f97cf7 (taxeditor): revert change in plugin.xml
Katja Luther
09:53 AM Revision 88df332d (taxeditor): smaller changes in preferences for distribution vocabularies
Katja Luther
08:59 AM feature request #7345: [E+M] Common name references selectable in TaxEditor
now there is a cdmPreference CommonNameReferencesWithMarker which can be set to true, if the selection dialog should ... Katja Luther
08:58 AM Revision 5c331673 (taxeditor): ref
Katja Luther
08:56 AM Revision c8631826 (cdmlib): ref #7345: rename cdmPreference for common name marker
Katja Luther
06:55 AM Revision c8e611f0 (cdmlib): ref #7793: add preferencePredicate for disable multiple classifications
Katja Luther

10/18/2018

10:50 PM Revision efbff4b3 (cdm-dataportal): ref #7835 first version of taxonGraph search block implemented
- registration search page with tabs for filter search and taxon graph search
- changing the search page path was n...
Andreas Kohlbecker
10:35 PM feature request #7793: Master ticket for E+M editor issues
the following db preferences are not available in admin preference pages yet, but can be added in DB:
* disable mu...
Katja Luther
10:32 PM Revision 30189b61 (taxeditor): ref #7793: add cdm preference to disable multi classification func...
Katja Luther
10:32 PM Revision 6e0d89ec (taxeditor): ref #7793: preference to disable id in source and name in source
Katja Luther
08:16 PM bug #7779 (Resolved): swagger UI broken after springfox-swagger2 upgrade
ready for review Andreas Kohlbecker
08:05 PM Revision ae797143 (cdmlib): ref #7770 fixing layout issue and menu items active state and updatin...
Andreas Kohlbecker
07:42 PM Revision ef485f52 (cdmlib): #7770 documenting springfox-swagger-ui update process
Andreas Kohlbecker
07:09 PM Revision dac99c73 (cdmlib): ref #7779 applying Cdm specific changes to springfox-ui:
- preserving the modified index.hml as index-last.html
- creatng diffs with the changes applied last time
- a...
Andreas Kohlbecker
06:35 PM Revision 24e59406 (cdmlib): ref #7779 upgrading springfox-swagger-ui to 2.6.1 and preserving the ...
Andreas Kohlbecker
03:53 PM Revision 8ea0f81f (cdmlib): ref #7779 upgrading springfox-swagger-ui to 2.6.1 and preserving the ...
Andreas Kohlbecker
03:41 PM Revision 6140d10b (taxeditor): Remove unused class
Patrick Plitzner
03:41 PM Revision 04ee4c38 (taxeditor): Fix details editing for TermEditor
Patrick Plitzner
03:16 PM Revision f573f946 (taxeditor): revert changes in cellEditor of distribution editor
Katja Luther
03:11 PM feature request #7834 (Closed): taxonGraph search listing all included names implemented
controller endpoint:
~~~
/registrationDTO/findInTaxonGraph?taxonNameFilter={QUERYTEXT}&pageNumber={PAGEINDEX}'
~...
Andreas Kohlbecker
03:06 PM feature request #7834 (Resolved): taxonGraph search listing all included names implemented
Applied in changeset commit:cdmlib|f37e7436b7a5e7315fea12bf11bddfd41952a254. Andreas Kohlbecker
03:06 PM Revision f37e7436 (cdmlib): fix #7834 findInTaxonGraph implemented for Registrations with Registr...
Andreas Kohlbecker
02:52 PM Revision 6a534f27 (taxeditor): add button to select default source in distribution editor
Katja Luther
02:29 PM Revision c0f42391 (cdmlib): fix problems for taxEditor preferences
Katja Luther
02:16 PM Revision 819ee4a9 (cdm-dataportal): Code cleaning
Patrick Plitzner
12:39 PM Revision b9cade28 (cdm-dataportal): Evaluate preference for auto suggest in csv export module
Patrick Plitzner
10:30 AM Revision 68a31601 (taxeditor): improve termdeletion, show only a warning when term can not be del...
Katja Luther
09:51 AM Revision 43a34efe (cdmlib): ref #7345: add preferencePredicate for commonname references
Katja Luther
09:12 AM Revision fa9caef2 (taxeditor): use NewTaxEditorInstance for CdmPreferences in TaxEditor and fix r...
Katja Luther
09:06 AM Revision 9b6c1bf1 (cdmlib): restructure preference predicates and add newTaxeditorInstance to cdm...
Katja Luther

10/17/2018

09:55 PM task #7795 (Closed): untilis xml DataSets creation without "[NULL]" values
I havn't really tested, just looked at the code. Good we have changed it not. The NULL values are disturbing. Andreas Müller
05:03 PM bug #7835 (Closed): taxonGraph search block implemented
Andreas Kohlbecker
05:02 PM feature request #7834 (Closed): taxonGraph search listing all included names implemented
Andreas Kohlbecker
04:47 PM bug #7833 (Rejected): submitters can access see any registration in any RegistrationWorkingSet
Submitters can access any RegistrationWorkingSet where the registrations are all visible.
Registrations where the su...
Andreas Kohlbecker
04:20 PM bug #7832 (New): rename RegistrationStatus READY to COMPLETE
this change need also be adapted in cdm-vaadin where the `sass` files might also require to be modified accordingly. Andreas Kohlbecker
04:17 PM bug #7831 (Resolved): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when...
Applied in changeset commit:cdm-vaadin|db1db90169123bf1cb0ef824211fc0cdd6c33df0. Andreas Kohlbecker
01:02 PM bug #7831 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when c...
Example:
Species *Navicula bahusiensis* being edited in TaxonNamePopupeditor with mode `VALIDATE_AGAINST_HIGHER_N...
Andreas Kohlbecker
04:17 PM Revision db1db901 (cdm-vaadin): fix #7831 excluding the current name from the WeaklyRelatedEntity...
Andreas Kohlbecker
04:16 PM Revision efc5d1e3 (cdmlib): ref #7831 adding name exlude filter to TaxonNamePartsFilter
Andreas Kohlbecker
03:55 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> The view configurations dialog does not disable buttons which are not available. Also "Done"...
Patrick Plitzner
03:54 PM feature request #7502: Add further columns to bulk editor
All the rest works very fine and is great new functionality!! Andreas Müller
03:53 PM feature request #7502: Add further columns to bulk editor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > The symbol still switches to label if if one sorts by a "protec...
Andreas Müller
03:53 PM feature request #7502: Add further columns to bulk editor
The view configurations dialog does not disable buttons which are not available. Also "Done" I would relabel to "Clos... Andreas Müller
03:52 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> The symbol still switches to label if if one sorts by a "protected" boolean field.
I have...
Patrick Plitzner
03:49 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> Question: does NAT support multi-sort? E.g. you want to sort first by protected or not prote...
Patrick Plitzner
03:47 PM feature request #7502: Add further columns to bulk editor
et al => et al. Andreas Müller
03:44 PM feature request #7502: Add further columns to bulk editor
Question: does NAT support multi-sort? E.g. you want to sort first by protected or not protected titleCache, second o... Andreas Müller
03:39 PM feature request #7502 (Feedback): Add further columns to bulk editor
The symbol still switches to label if if one sorts by a "protected" boolean field. Andreas Müller
03:48 PM Revision 9387c2d2 (taxeditor): ref #7502 Fix et al. label
Patrick Plitzner
03:47 PM Revision 2e23de44 (taxeditor): minor optimization
Patrick Plitzner
03:08 PM feature request #7345 (Feedback): [E+M] Common name references selectable in TaxEditor
The PreferencePredicate still seems to be missing so I can't review and functionality is not yet there.
If UI impl...
Andreas Müller
02:52 PM feature request #7809: Improve namerelationship handling in editor
It works now if English is chosen as language for representations. I had German installed. Andreas Müller
10:08 AM feature request #7809: Improve namerelationship handling in editor
still not available in nightly Andreas Müller
02:50 PM feature request #3990 (In Progress): [DISCUSS] How to implement citation suggestion to each taxon
Andreas Müller
02:49 PM feature request #3990 (Resolved): [DISCUSS] How to implement citation suggestion to each taxon
Andreas Müller
02:46 PM bug #7792 (Closed): Rendering of context menu of factual data view is super slow
It is much faster now and functionality still seems to work. So we can close the ticket. Andreas Müller
02:39 PM Revision d3feab7b (taxeditor): set specimen preference to true when editing the first time
Katja Luther
02:37 PM Revision f2efb095 (taxeditor): set specimen preference to true when editing the first time
Katja Luther
02:35 PM task #2406 (Closed): DeterminationEventElement is lacking references
Yes selecting the name is not so critical for now.
The new function works, ticket can be closed.
There is a mod...
Andreas Müller
02:34 PM Revision a2a58fcc (cdmlib): Add tax editor preferences utilities
Andreas Müller
02:00 PM bug #7830 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to test...
Andreas Kohlbecker
02:00 PM bug #7830 (Resolved): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to te...
Applied in changeset commit:cdm-vaadin|68cc664b0f005de9c2d20aa0b518074811d90ce9. Andreas Kohlbecker
12:55 PM bug #7830 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to test...
For ranks below species when mode `VALIDATE_AGAINST_HIGHER_NAME_PART` is enabled the "specific epithet" field restric... Andreas Kohlbecker
02:00 PM Revision 68cc664b (cdm-vaadin): fix #7830 fixing WeaklyRelatedEntityCombobox reset to textfield f...
Andreas Kohlbecker
01:44 PM Revision 9f73bcfe (taxeditor): Fix potential NPE
Patrick Plitzner
01:36 PM Revision 362c07ab (taxeditor): ref #6554 Set initial expansion state
Patrick Plitzner
12:39 PM Revision 388fc07c (cdmlib): ref #7648 fixing bugs related to single taxa per graph and updating r...
Andreas Kohlbecker
12:39 PM Revision 3b82f2c7 (cdmlib): ref #7791 adding CORS headers to TaxonGraphService method
Andreas Kohlbecker
12:37 PM Revision 1717c91b (taxeditor): minor changes in factual data menu
Katja Luther
11:45 AM feature request #2444 (Closed): Disable binom and trinom hybrid flag when epithets are not available
Seems to work Andreas Müller
11:43 AM feature request #7775: Factual Data label issue
If reference selection dialog is canceled a new description is created, however AND an empty source is created.
Bo...
Andreas Müller
11:39 AM feature request #7775 (Feedback): Factual Data label issue
> If a source is added in the details view, and the titleCache is not protected, it should be generated into the labe... Andreas Müller
11:37 AM Revision 15aa0a1c (taxeditor): ref #6554 Fix initial expansion state
Patrick Plitzner
11:31 AM Revision 97c5aaf3 (taxeditor): Increase max length for factual data label provider
Patrick Plitzner
10:46 AM feature request #7660 (Feedback): Indicate the row state in a NAT table via symbols
This is generally fixed and can be closed. But there are 2 open issues.
* The symbol for "set target" is blue and...
Andreas Müller
10:43 AM Revision 8544e2d4 (taxeditor): minor
Katja Luther
10:37 AM feature request #7793: Master ticket for E+M editor issues
Now the New command in Factual Data View is on top, but in parallel we have "New Factual Data Set" and "New Factual D... Andreas Müller
10:24 AM Revision fe3f1c66 (taxeditor): ref #7793 rename English command for Move Factual Data to Other Ta...
Andreas Müller
09:54 AM bug #7773 (Closed): when changing rank the hybrid section is empty
Seems to be fixed. Andreas Müller
07:37 AM Revision 96e2a5dc (taxeditor): Change label for "et al" column in agent bulk editor
Patrick Plitzner

10/16/2018

06:05 PM Revision 1c4a145c (cdmlib): ref #7829 ref #7800 remove nomenclaturallyRelevant from Reference mat...
Andreas Müller
06:02 PM bug #7829 (In Progress): Improve deduplication of parsed names and references
Andreas Müller
06:01 PM bug #7829 (In Progress): Improve deduplication of parsed names and references
The default matching strategies are to strict for data name and nom. ref. data created by a parser. Also there are so... Andreas Müller
05:52 PM Revision 517ecf1f (cdmlib): ref #7800 add specific subclass matching to matching strategies
Andreas Müller
05:51 PM bug #7828 (In Progress): Remove date published from journals in E+M
>1200 journals from the initial import in 2004 do have a date published. Journals generally should not have a date pu... Andreas Müller
05:49 PM Revision c7a433e1 (cdmlib): cleanup
Andreas Müller
05:45 PM Revision ae79d763 (cdmlib-apps): ref #7420 latest changes to PhycobankActivator
Andreas Müller
03:28 PM Revision 84f5eea0 (taxeditor): ref #7063: fix NPE in distribution editor
Katja Luther
03:22 PM bug #7827 (Closed): LazyInitializationException when saving term editor (named areas)
This happens when dragging a term on at least level 2 to another term on at least level 2
~~~ text
login : admin
...
Katja Luther
02:24 PM Revision f53701cb (taxeditor): ref #7063: fix NPE in local preferences
Katja Luther
02:10 PM Revision 67b5b870 (taxeditor): missing english label
Katja Luther
02:06 PM bug #7826: NPE after saving groupbulkeditor
please review Katja Luther
02:05 PM bug #7826 (Resolved): NPE after saving groupbulkeditor
Applied in changeset commit:taxeditor|782e447962cac9eef6e2e7f9c1a394ad8657c1c8. Katja Luther
01:38 PM bug #7826 (Closed): NPE after saving groupbulkeditor
~~~ text
!ENTRY org.eclipse.core.jobs 4 2 2018-10-16 13:37:28.658
!MESSAGE An internal error occurred during: "Lade...
Katja Luther
02:05 PM Revision 782e4479 (taxeditor): fix #7826: change service for loading entity
Katja Luther
01:36 PM bug #7699: NPE when searching for specimen in bulk editor
I also had it today in the Users Bulkeditor:
~~~
login :
editor version : 5.4.0.201810151448
server : ()
sch...
Andreas Kohlbecker
01:07 PM Revision 8ce2c6bd (taxeditor): ref #3989: add preferred vocs to named area selection dialog
Katja Luther
12:40 PM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
in admin preferences now there is the possibility to define the vocabularies for common name area selection, distribu... Katja Luther
12:38 PM feature request #7283: Improvements for alternative identifier search
the search for identifier and titleCache is implemented as well. Katja Luther
12:36 PM Revision 032bbbac (cdmlib): code cleaning
Katja Luther
12:11 PM Revision 6c029f30 (taxeditor): ref #7283: minor
Katja Luther
11:54 AM Revision c459863f (cdmlib): ref #7283: add service method to search for identifier and titleCache
Katja Luther
11:38 AM Revision 305c1b35 (taxeditor): ref # #7283: add preference to configure search for identifier
Katja Luther
09:30 AM Revision 8ce2d72b (taxeditor): ref #7809: change order of inverse label and label of the namerela...
Katja Luther
09:19 AM feature request #7809: Improve namerelationship handling in editor
jenkins failed because of download problems, but the nightly build of this night contains the implementation, now. Katja Luther
09:06 AM feature request #7809 (Feedback): Improve namerelationship handling in editor
In yesterday evenings nightly the invers direction still is not available so I can't test. Andreas Müller

10/15/2018

07:08 PM bug #7825 (New): NPE in eu.etaxonomy.taxeditor.bulkeditor.input.sortprovider.GroupNameComparator ...
after editing the Group "Curator" in edit-test/phycobank
~~~
login :
editor version : 5.4.0.201810151448
serve...
Andreas Kohlbecker
05:05 PM Revision ee370389 (taxeditor): ref #7589 Adapt to service layer changes
Patrick Plitzner
05:05 PM Revision a3141e13 (cdmlib): ref #7589 Fix transactional annotations
Patrick Plitzner
05:05 PM Revision 412ba757 (cdmlib): ref #7589 Remove auto creation of default description
Patrick Plitzner
05:05 PM Revision 0848df46 (cdmlib): ref #7589 Move long running task to corresponding service
- this solves the deadlocks when opening the matrix editor Patrick Plitzner
04:43 PM feature request #7809 (Resolved): Improve namerelationship handling in editor
please review. I adapted the wizard like it is descriped in ticket description. Maybe the text should be different?? Katja Luther
04:41 PM Revision f9328c66 (taxeditor): ref #7809: adapt namerelationship wizard
Katja Luther
04:04 PM Revision 74389de2 (taxeditor): ref #7793: smaller chenges in factual data context menu
Katja Luther
04:02 PM Revision 85ad5f88 (taxeditor): ref #7809: namerelationshiptypes should be shown in both directions
Katja Luther
03:47 PM Revision 3b278eb0 (cdm-vaadin): ref #7785 using CdmTransientEntityAndUuidCacher to promote using ...
Andreas Kohlbecker
03:47 PM Revision 67bf2db8 (cdm-vaadin): ref #7785 preliminary commit
Andreas Kohlbecker
03:45 PM feature request #7800 (In Progress): Parse preliminary RefDetails
Andreas Müller
03:44 PM feature request #7801 (In Progress): AM: Deduplicate references
Andreas Müller
12:55 PM task #7785: CdmUserHelper caches permission information
Implemented and description updated. Andreas Kohlbecker
12:05 PM task #7785 (Resolved): CdmUserHelper caches permission information
Applied in changeset commit:cdmlib|8bbd4f27e47a00d244480b4f5a01056d415bda27. Andreas Kohlbecker
12:04 PM Revision 8bbd4f27 (cdmlib): fix #7785 CdmUserHelper can use ICdmEntityUuidCacher to avoid loading...
- inner class CachingCdmUserHelper to be used when CdmUserHelper.withCache() is called
- ICdmEntityUuidCacher and...
Andreas Kohlbecker
11:56 AM Revision 97315e05 (taxeditor): minor
Katja Luther
11:55 AM Revision 2a4b0092 (taxeditor): ref #7793: show supplemental data for distribution editor and smal...
Katja Luther
10:14 AM Revision ae328426 (taxeditor): Use image resources for button image
Patrick Plitzner
10:14 AM Revision 487ef756 (taxeditor): ref #7674 Add icon for different description types
Patrick Plitzner
10:14 AM Revision fae291ad (taxeditor): Remove unused dependency
Patrick Plitzner
09:51 AM Revision 25b69c4e (taxeditor): import/export should not be shown whithout connection
Katja Luther

10/14/2018

08:09 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Müller wrote:
> * the eu.etaxonomy.taxeditor.remoting.cache.ConversationalTransientEntityCacher transform...
Andreas Kohlbecker
07:45 PM bug #7824 (Resolved): PopupViewRegistration not removing registered views causes memleak
Applied in changeset commit:cdm-vaadin|bba202394eb654dfbdba5a8e7feeda461635157e. Andreas Kohlbecker
07:16 PM bug #7824 (Closed): PopupViewRegistration not removing registered views causes memleak
The PopupViewRegistration registers `ApplicationView`s and PopupViews. Alt least the `ApplicationView` are not remove... Andreas Kohlbecker
07:44 PM Revision bba20239 (cdm-vaadin): fix #7824 cleaning up maps in PopupViewRegistration when views ar...
Andreas Kohlbecker
02:57 PM feature request #7801: AM: Deduplicate references
Find deduplicated records in CDM
~~~ sql
SELECT osb.id, ref.id, osb.idInSource, osb.idNamespace, ref.refType, ref...
Andreas Müller
02:56 PM Revision aecf2600 (cdmlib-apps): ref #7823 implement user.person deduplication
Andreas Müller
02:56 PM bug #7823 (In Progress): User Persons are not deduplicated
Andreas Müller
02:55 PM bug #7823 (Resolved): User Persons are not deduplicated
Persons related to users are often the same as they are only for different sec's.
We may want to deduplicate them....
Andreas Müller
02:53 PM Revision 6943d396 (cdmlib-apps): ref #7799 deduplicate and parse authorteams
Andreas Müller
02:52 PM Revision db652f5c (cdmlib-apps): ref #7801 and ref #3787 deduplicate reference.authorstring and r...
Andreas Müller
02:49 PM Revision f6275b1f (cdmlib): ref #7801 unify cache initialization in deduplicationHelper
Andreas Müller
02:48 PM Revision 96741cad (cdmlib): cleanup
Andreas Müller
09:45 AM Revision 3f3714e3 (cdmlib): ref #7799 compute author caches in deduplicationHelper
Andreas Müller

10/13/2018

07:10 AM Revision 321b9521 (taxeditor): ref #7793: fix problem with details view after save in distributio...
Katja Luther

10/12/2018

10:43 PM task #7758: Manual cleanup after E+M import
Clean up Agent duplicates:
~~~ sql

SELECT osb.id, ab.id, ab.DTYPE, osb.idInSource, osb.idNamespace, ab.titleC...
Andreas Müller
10:25 PM bug #7814 (Resolved): Section in Name and section in Basionym, usability
Applied in changeset commit:cdm-vaadin|23cee55fd9f05d189974daa67201c0f552c216d3. Andreas Kohlbecker
10:22 PM Revision 23cee55f (cdm-vaadin): fix #7814 CdmEditor not readlony with un-persisted entities and h...
Andreas Kohlbecker
06:49 PM Revision 52df026c (cdm-vaadin): ref #7630 fixing creation of blocking relations - removing old p...
Andreas Kohlbecker
06:35 PM Revision 886e3f27 (cdmlib): ref #7648 avoiding NPE during equality check in TaxonGraphBeforeTrans...
Andreas Kohlbecker
06:12 PM Revision 644bd633 (cdmlib): ref #7648 adding links to the ticket as preliminary rudimentary docum...
Andreas Kohlbecker
06:10 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
now the expected functionality I implemented, but we could think about refactoring the `TaxonGraphHibernateListener` ... Andreas Kohlbecker
05:52 PM Revision c621e94f (cdm-vaadin): ref #7648 using runAsAuthenticator for RunAsAdmin to configure Ta...
Andreas Kohlbecker
05:38 PM Revision ee7aab02 (cdmlib): ref #7709 fixing missing runAsAuthenticator for RunAsAdmin, TaxonGrap...
Andreas Kohlbecker
04:57 PM Revision 6623206c (cdmlib): ref #7709 adding missing @CdmHibernateListener config annotation to a...
Andreas Kohlbecker
04:34 PM bug #7822 (Duplicate): RegistrationUI potentially causes memory problems or deadlocks
Currently users complain about very slow response time of the edit-production server.
In order to verify the presu...
Andreas Kohlbecker
03:59 PM Revision dea7d769 (taxeditor): Fix saving of FeatureTreeEditor
Patrick Plitzner
02:31 PM Revision cf26134d (taxeditor): Fix possible ClassCastException
Patrick Plitzner
01:58 PM bug #7818: TaxonRelationshipsDTOTest leaves test environment in unpredictable state
> Also the TermLoader has an unloadAllTerms method. We could call this in the AfterClass method, but ONLY if the term... Andreas Kohlbecker
01:44 PM Revision 6ec42fab (cdm-vaadin): ref #7648 adapting CdmVaadinConfiguration to changes in the Taxon...
Andreas Kohlbecker
01:23 PM Revision 8a790929 (cdmlib): ref #7709 adding REGISTRATION to ClearDBDataSet.xml to solve test pro...
Andreas Kohlbecker
01:23 PM Revision 7df5025d (cdmlib): removing useless annotation
Andreas Kohlbecker
01:13 PM Revision 8d2b7d49 (cdmlib): ref #7793: add preferencePredicates for taxeditor
Katja Luther
12:28 PM Revision 6c5e8c9a (cdmlib): cleanup
Andreas Müller
11:26 AM Revision 469b75d0 (cdm-server): ref #7085 Adjust log path
Patrick Plitzner
11:16 AM Revision 9672401c (cdmlib): ref #7709 JUnit testsuite to reproduce the test failure when running ...
Andreas Kohlbecker
11:15 AM feature request #7821 (New): Use log4j2 for cdmserver logging to avoid having a separate cron job...
Have a look at:
https://logging.apache.org/log4j/2.x/manual/appenders.html#RollingFileAppender
In this case an ...
Patrick Plitzner
11:06 AM bug #6287 (Closed): Rolling cdmserver.log file only contains entries from startup phase
This is fixed by fixing #7085 Patrick Plitzner
11:03 AM bug #7085 (Resolved): cdmserver logfiles getting too big, use DailyRollingFileAppender
The logging is now configured to daily logging i.e. every day a new log file is generated.
The change was done man...
Patrick Plitzner
11:03 AM feature request #7820 (New): Add cron job for deleting cdmserver log files after a specified time...
By fixing #7085 the log files are now generated on a daily base. A cron job should delete the old log files, e.g. aft... Patrick Plitzner
10:58 AM feature request #7819 (New): Log4j.properties file is not properly packaged by the cdmserver inst...
Changes applied to the log4j.properties file in the cdm-server project resources are not reflected in the installed c... Patrick Plitzner
10:47 AM Revision 04656595 (cdm-server): ref #7085 Set logging to daily rollover
Patrick Plitzner
10:24 AM feature request #7793 (In Progress): Master ticket for E+M editor issues
Katja Luther
10:24 AM Revision 3d9956a8 (taxeditor): ref #7793: smaller changes in original sources part
Katja Luther
10:16 AM Revision 05a6f11d (taxeditor): ref #7793: add preference for show taxonnode wizard
Katja Luther
10:09 AM Revision 8c2c3497 (cdmlib): cleanup
Andreas Müller
09:25 AM Revision b154ea92 (cdmlib-apps): include filtered authors in E+M import
Andreas Müller
09:23 AM Revision 274e96c0 (cdmlib-apps): #7799 reduce duplicated sources
Andreas Müller
09:19 AM Revision 8794602e (cdmlib-apps): improve performance for author loading in E+M
Andreas Müller
09:18 AM Revision 72c3d333 (cdm-server): ref #7085 Adjust log path
Patrick Plitzner
09:08 AM task #7796 (In Progress): [CHECK] Handle Bibliography Name Facts correctly
Andreas Müller
09:07 AM Revision 52e6e4b5 (cdmlib-apps): ref #7796 remove ILDIS Bibliographie NameFacts from E+M import
Andreas Müller

10/11/2018

09:39 PM bug #7818: TaxonRelationshipsDTOTest leaves test environment in unpredictable state
There are multiple possibilities.
The simplest is to add a logger saying that this test should not run as first whi...
Andreas Müller
06:30 PM bug #7818 (Feedback): TaxonRelationshipsDTOTest leaves test environment in unpredictable state
Andreas Kohlbecker
04:04 PM bug #7818 (Feedback): TaxonRelationshipsDTOTest leaves test environment in unpredictable state
as stated in #7648#note-14 the `TaxonRelationshipsDTOTest` causes problems for other tests.
e.g.: Running the foll...
Andreas Kohlbecker
06:39 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
The problem described in #7818 was not the actual cause for the test failing in the full suite, another candidate is ... Andreas Kohlbecker
04:08 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Since this is not a problem with the `TaxonGraphHibernateListenerTest` I am creating a new issue: #7818 Andreas Kohlbecker
03:10 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
After moving the `TaxonGraphHibernateListenerTest` into `cdmlib-services` we are again facing problems with test bein... Andreas Kohlbecker
05:13 PM Revision b78e167b (cdm-server): Revert "ref #7085 Use DailyRollingFileAppender (in code)"
This reverts commit 02ef1e472669c30153c94f27084bde7e85e9482b. Patrick Plitzner
04:57 PM Revision 02ef1e47 (cdm-server): ref #7085 Use DailyRollingFileAppender (in code)
Patrick Plitzner
04:43 PM Revision 99c113d2 (cdm-server): ref #7085 Use DailyRollingFileAppender to generate one log per day
Patrick Plitzner
04:24 PM Revision e7c1c8fa (cdmlib): Change system.out to log.info()
Patrick Plitzner
02:01 PM Revision 83f2186a (taxeditor): ref #7793: adapt taxonnode wizard and add menu item to set exclude...
Katja Luther
01:31 PM Revision 4443b90a (taxeditor): ref #7793: adapt taxonnode wizard and add menu item to set unplace...
Katja Luther
12:07 PM Revision e8bf913b (taxeditor): missed fragment.e4xmi for bulk editor
Katja Luther
11:45 AM bug #7817 (New): Team caches should not show '& al.'
If a team is fully defined with all members of the team the caches should not show "at al." if the team is larger the... Andreas Müller
11:24 AM Revision f97f57f1 (taxeditor): set default for SHOW_SPECIMEN preference to true
Katja Luther
10:14 AM feature request #7799: AM: Parse authorteams
Useful scripts
~~~ sql
DECLARE @authorId as int;
Set @authorId = 3395
;
SELECT *
FROM Name n INNER JOIN dbo...
Andreas Müller
09:07 AM Revision f528c666 (cdmlib): ref #7648 free configurable TaxonGraphHibernateListener ready
Andreas Kohlbecker

10/10/2018

06:02 PM Revision 48e27c57 (cdmlib): ref #7648 moving TaxonGraphHibernateListener and related classes into...
Andreas Kohlbecker
05:51 PM Revision f7df0b93 (cdmlib): ref #7648 TaxonGraphHibernateListener as Spring bean configured via t...
Andreas Kohlbecker
05:51 PM Revision 134e39f0 (cdmlib): sanitizing contoller method doGetIncludedTaxa
Andreas Kohlbecker
05:51 PM Revision fb8a4982 (cdmlib): fixing usage of wrong logger in RunAsAuthenticator
Andreas Kohlbecker
03:37 PM Revision 69be3e73 (taxeditor): ref #7793: add preference to hide all specimen related issues
Katja Luther
02:47 PM Revision 87cbb479 (cdmlib): ref #7793: preferencePredicate for mediaview and checklist perspective
Katja Luther
02:01 PM Revision cc4e78d1 (taxeditor): ref #7793: add preference to set checklist perspective as default
Katja Luther
01:58 PM feature request #7648 (Feedback): Create taxonrelation to genus or species when subordinate names...
The `RunAsAuthenticator` is in cdmlib-service and `TaxonGraphBeforeTransactionCompleteProcess` in cdmlib-persistence.... Andreas Kohlbecker
01:49 PM feature request #7648 (In Progress): Create taxonrelation to genus or species when subordinate na...
The taxon graph management processes are currently run in with the current authentication, this causes problems if a... Andreas Kohlbecker
12:54 PM Revision 1ff3a9d2 (cdmlib-apps): cleanup
Andreas Müller
12:53 PM Revision 31e71264 (cdmlib-apps): ref #7799 improve performance of authorteam loading
Andreas Müller
12:52 PM Revision a5e9dc2f (cdmlib-apps): ref #7799 and others reinstall null check
Andreas Müller
12:52 PM Revision 5d979b5d (cdmlib-apps): add euromed production to activator
Andreas Müller
12:51 PM Revision 14295b4b (cdmlib-apps): ref #7798 implement and improve occurrence.nameUsedInSource impo...
Andreas Müller
12:48 PM Revision 640d8847 (cdmlib-apps): split occurrence and occurrence source import
Andreas Müller
12:45 PM Revision 14ec817b (cdmlib-apps): ref #7800 parse preliminary RefDetails (first start)
Andreas Müller
12:38 PM Revision f4b9ac06 (cdmlib-apps): ref #7799 implement author parsing for AuthorTeam and Reference....
Andreas Müller
12:35 PM Revision 4f033523 (cdmlib-apps): cleanup
Andreas Müller
12:17 PM Revision 449cd4da (cdmlib-apps): ref #7346 create areas only if vocabulary does not yet exist
Andreas Müller
12:03 PM bug #7813 (Duplicate): Basionym without journal
Andreas Kohlbecker
10:32 AM Revision 41b21192 (cdmlib-apps): add euromed production to destinations
Andreas Müller
10:30 AM Revision 1b9b7bfd (cdmlib): ref #7799 handle initials for teamOrPerson.getFullTitle
Andreas Müller
10:30 AM Revision c277d1a7 (cdmlib): ref #7799 handle protected titlecache for teamOrPerson.getFullTitle
Andreas Müller
10:30 AM Revision d6fcab17 (cdmlib): cleanup
Andreas Müller
10:06 AM Revision 38029748 (taxeditor): Merge branch 'develop' into detailsViewCache
Patrick Plitzner
09:45 AM task #7816 (New): Handle nomStatus references correctly
In E+M most nomenclatural status have a reference. In most cases it is one of the references 7000000, 7100000, 720000... Andreas Müller
09:27 AM Revision 0e786079 (taxeditor): minor
Katja Luther
09:14 AM Revision 0211eb37 (cdmlib): add new preferencePredicates
Katja Luther
08:53 AM Revision 329e699e (taxeditor): Merge branch 'develop' into detailsViewCache
Patrick Plitzner
08:42 AM task #7785: CdmUserHelper caches permission information
Answer is in the updated description. Andreas Kohlbecker

10/09/2018

06:26 PM task #7785: CdmUserHelper caches permission information
Can you define what functionality is exactly needed from the CdmTransientEntityCacher and why #7709 needs to be fixed... Andreas Müller
05:58 PM bug #7222: Phycobank UI improve labels
To "Start a new registration process either for a name or typification."
Suggestion:
* "Start registering scien...
Andreas Kohlbecker
05:54 PM bug #7222: Phycobank UI improve labels
This issue is almost complete, please see the two open TODOs in the issue description. Andreas Kohlbecker
05:51 PM task #7796: [CHECK] Handle Bibliography Name Facts correctly
ERS: probably not to be imported at all Andreas Müller
05:40 PM feature request #7815 (New): TaxonNameEditor: Hint user on missing citation detail for nomenclatu...
Reference detail, wenn NULL bei Speicherversuch: warning “Please insert the reference page and of figure of the nomen... Andreas Kohlbecker
05:32 PM Revision d98b71cb (cdm-vaadin): ref #7222 modifying the text on nomRef sub sections
Andreas Kohlbecker
05:27 PM Revision b378fe05 (cdm-vaadin): ref #7222 removing the 'Hint:' line in TaxonNameEditor
Andreas Kohlbecker
03:40 PM feature request #7799 (In Progress): AM: Parse authorteams
Andreas Müller
03:18 PM Revision 3b975922 (taxeditor): ref #7793: add DB preferences to hide specimen and import issues a...
Katja Luther
02:58 PM Revision 81641aab (taxeditor): Fix possible IOOB exception
Patrick Plitzner
02:00 PM bug #7814: Section in Name and section in Basionym, usability
Es funktioniert nur die erste Version, die für User etwas fehlerhaft wirkt.
Ich kann bei der Basionym-Referenz mit...
Wolf-Henning Kusber
01:23 PM bug #7814: Section in Name and section in Basionym, usability
2. Screenshot sollte zeigen:
You, Q. & Kociolek, J.P. - in You, Q., Kociolek, J.P. & Wang, X., New Gomphoneis Cleve ...
Wolf-Henning Kusber
01:22 PM bug #7814 (Closed): Section in Name and section in Basionym, usability
Bedienungsfehler möglich, wenn neuer Name und Basionym jeweils eine In-Zitierung haben.
Vorgehen: Referenz eingebe...
Wolf-Henning Kusber
12:55 PM bug #7813 (Duplicate): Basionym without journal
When a new name has a basionym, the basionym reference can be selected or be new.
If the reference is a new article ...
Wolf-Henning Kusber

10/08/2018

03:00 PM task #7420 (Closed): Import for higher taxon graph for phycobank
new ticket for the actual import tasks created: #7811 Andreas Kohlbecker
11:21 AM task #7420: Import for higher taxon graph for phycobank
Ok, can you close the ticket and open a ticket for what ever you stil need? Andreas Müller
11:04 AM task #7420 (Feedback): Import for higher taxon graph for phycobank
I reviewed the imported taxon graph relations. The resulting graph exactly matches the expectations.
The implementat...
Andreas Kohlbecker
08:54 AM task #7420: Import for higher taxon graph for phycobank
all other data import and data cleaning issues are copied to #7808 Andreas Kohlbecker
08:31 AM task #7420: Import for higher taxon graph for phycobank
Andreas Müller wrote:
> You should check by
>
> ~~~ sql
> SELECT titleCache, count(*) as n
> FROM TaxonName tn...
Andreas Kohlbecker
02:59 PM task #7811 (In Progress): Import higher classifications
Andreas Kohlbecker
02:59 PM task #7811 (Resolved): Import higher classifications
The following classifications need to be imported using the import created for #7420
* Frey W. 2015: Syllabus of t...
Andreas Kohlbecker
02:36 PM bug #7777 (Resolved): NPE on login attempt after logout
Applied in changeset commit:cdm-vaadin|3363dabd63329f2f2fd160f5a6c5107ba10a9d2e. Andreas Kohlbecker
02:35 PM Revision 3363dabd (cdm-vaadin): fix #7777 avoiding null access to views of undisposed LoginPresen...
Andreas Kohlbecker
01:55 PM Revision e14cd818 (taxeditor): Merge branch 'develop' into detailsViewCache
# Conflicts:
# eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/name/NameDetailElement.java
Patrick Plitzner
01:30 PM feature request #7810 (In Progress): DB preference to make all Specimen functionality/menu items ...
Katja Luther
01:29 PM feature request #7810 (Feedback): DB preference to make all Specimen functionality/menu items inv...
if the preference is set to false everything concerning specimen should be disabled:
* imports
* Specimen Type...
Katja Luther
01:08 PM feature request #7809 (In Progress): Improve namerelationship handling in editor
Katja Luther
01:08 PM feature request #7809 (Feedback): Improve namerelationship handling in editor
copied from #7793:
Namerelationships should be available for both directions in name editor details view.
We sh...
Katja Luther
12:41 PM Revision c61ea4bc (taxeditor): Remove duplicate methods
Patrick Plitzner
12:40 PM Revision 0dda9c8f (taxeditor): ref #7502 Save table settings when closing bulk editor
Patrick Plitzner
12:36 PM Revision 85bb59b4 (taxongraph-view): oops
Andreas Kohlbecker
12:34 PM Revision d54ba758 (taxongraph-view): ref #7791 using edit-test as datasource and adding more test...
Andreas Kohlbecker
12:29 PM Revision 3005f915 (taxongraph-view): ref #7791 display of the chosen datasource
Andreas Kohlbecker
12:16 PM Revision 271be809 (taxeditor): ref #7502 Fix "de" translation
Patrick Plitzner
12:12 PM Revision ef7ec8ab (taxeditor): ref #7502 Add table settings to search bar
Patrick Plitzner
12:09 PM Revision 6fd483b7 (taxeditor): ref #7502 Remove debug context menu
Patrick Plitzner
11:36 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
Andreas Kohlbecker wrote:
> Do you want me to do something about this issue? I think my task was the according imple...
Andreas Müller
08:23 AM feature request #3990 (Feedback): [DISCUSS] How to implement citation suggestion to each taxon
Do you want me to do something about this issue? I think my task was the according implementation in the data-portal. Andreas Kohlbecker
08:16 AM Revision 29b3b816 (cdmlib): commenting createTestDataSet() @Test annotation
Andreas Kohlbecker
07:57 AM bug #7807 (New): Multiple mobile Usability issues
The new google webmasters console reports multiple mobile Usability issues:
* Text too small to read
* Viewport n...
Andreas Kohlbecker

10/05/2018

06:38 PM Revision bab39794 (taxongraph-view): adding test data file edges.json
Andreas Kohlbecker
06:34 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
implementation complete! Andreas Kohlbecker
06:34 PM Revision 11ab88e8 (cdmlib): ref #7648 automatic management of lower ranked names in the taxon graph
Andreas Kohlbecker
05:56 PM Revision 62b55a78 (taxeditor): ref #7502 Show tooltip for lock icon in header
Patrick Plitzner
05:35 PM Revision 9767c1ad (taxeditor): ref #7502 Show lock icon in header
Patrick Plitzner
03:59 PM Revision 4c90f595 (cdmlib): Merge branch 'feature/#7648' into develop
- TaxonGraphDao
- TaxonGraphController
- TaxonGraphService
- TaxonGraphDTO
- TaxonGraphHibernateListener and proc...
Andreas Kohlbecker
03:58 PM Revision 19628819 (cdmlib): ref #7648 fixing problems in TaxonGraphTest
Andreas Kohlbecker
03:34 PM Revision 849697fa (cdm-vaadin): fixing bug related to creation of new names in RegistrationWorkin...
Andreas Kohlbecker
03:23 PM Revision 91e05af0 (cdmlib): ref #7791 TaxonGraphDao supressing Names associated with Registration...
Andreas Kohlbecker
02:55 PM Revision 4c5284df (cdmlib): ref #7648 moving taxongraph methods from taxonDao to taxonGraphDao
Andreas Kohlbecker
02:48 PM Revision 397b3cd7 (cdm-vaadin): ref #7648 startup option for registrations to create missing taxo...
Andreas Kohlbecker
02:46 PM Revision 9bdd2739 (cdmlib): ref #7791 TaxonGraphNodeDTO with rank labels
Andreas Kohlbecker
02:40 PM Revision 3406fef9 (taxongraph-view): initial version of the taxonGraph visualization using cytosc...
Andreas Kohlbecker
12:32 PM bug #3276 (Closed): NPE for "Move Elements" context menu option
works fine Patrick Plitzner
10:14 AM bug #3276: NPE for "Move Elements" context menu option
The NPE I could not reproduce. The menu entry for move factual data is displayed only for descritions, now.
Why the...
Katja Luther
09:17 AM bug #3276 (Feedback): NPE for "Move Elements" context menu option
I could not reproduce this exception how described above but there is another one.
Now there is also the context m...
Patrick Plitzner
12:28 PM feature request #7502 (Resolved): Add further columns to bulk editor
I implemented all of the mentioned properties as columns.
Please check all types of bulk editors.
Patrick Plitzner
12:27 PM Revision 9d42b88f (taxeditor): ref #7502 Add various occurrence columns
Patrick Plitzner
12:27 PM Revision bb67f3ba (taxeditor): ref #7502 Add nomenclatural title to agent bulk editor
Patrick Plitzner
12:27 PM Revision 521ddbfc (taxeditor): ref #7502 Refactor column generation
- move constants and column properties to bulk editor input Patrick Plitzner
12:27 PM Revision d9ade402 (taxeditor): ref #7502 Add protected cache boolean property columns
Patrick Plitzner
12:27 PM Revision 079534a2 (taxeditor): ref #7502 Show boolean properties in checkboxes
Patrick Plitzner
12:27 PM Revision fe289550 (taxeditor): ref #7502 Add name cache and authorship cache for names
Patrick Plitzner
12:27 PM Revision de3db973 (taxeditor): ref #7502 code cleaning
Patrick Plitzner
12:27 PM Revision d1ccac39 (taxeditor): ref #7502 Add property columns for agents, media and references
Patrick Plitzner
12:27 PM Revision 27cee58f (taxeditor): ref #7502 Add Name.Genus and epithets
Patrick Plitzner
12:27 PM Revision 091afa8b (taxeditor): ref #7659 Normalize column size
Patrick Plitzner
12:27 PM Revision 68befb95 (taxeditor): ref #7502 Add abbrev (nomencl.) cache for references
Patrick Plitzner
12:27 PM Revision 11ba4bed (taxeditor): ref #7502 Change column order
- Move type column back Patrick Plitzner
12:27 PM Revision 0e7c806f (taxeditor): ref #7502 Add boolean property columns
Patrick Plitzner
11:38 AM Revision 43c739f3 (taxeditor): smaller changes for factual data menu
Katja Luther
10:24 AM Revision bd0c87e3 (taxeditor): ref #3276:minor
Katja Luther
10:11 AM Revision feef82e2 (taxeditor): ref #3276:move fact should be displayed only for facts
Katja Luther
10:11 AM Revision ae468727 (taxeditor): fix NPE when no ABCD preference exist when opening preference dialog
Katja Luther
08:47 AM Revision 2984c728 (taxeditor): ref #7806 Make description text scrollabel and multi-line
Patrick Plitzner
08:43 AM feature request #7806 (Resolved): GfBio Term Search issues
Patrick Plitzner
08:42 AM Revision 9e521c57 (taxeditor): ref #7806 Implement selection dialog for ontologies
Patrick Plitzner
08:42 AM Revision efab2544 (taxeditor): ref #7806 small label change
Patrick Plitzner
08:42 AM Revision 341c6293 (taxeditor): ref #7806 show search result count
- also remove "Load details" button Patrick Plitzner
08:42 AM Revision 9f8cd368 (taxeditor): ref #7806 Sort result list
Patrick Plitzner
08:42 AM Revision e2c16f04 (taxeditor): ref #7806 Handle wildcard search
Patrick Plitzner
08:42 AM Revision b5610bde (taxeditor): ref #7806 Move ontology abbreviation to the end of the term label
Patrick Plitzner

10/04/2018

09:53 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
"Session is closed!"-problem is solved now. Andreas Kohlbecker
05:44 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
There is a problem when running the test in the maven test suite. The `TaxonGraphHibernateListenerTest` fails when it... Andreas Kohlbecker
09:44 PM Revision 81c01935 (cdmlib): ref #7648 more pulling up into AbstractHibernateTaxonGraphProcessor
Andreas Kohlbecker
09:21 PM Revision 954ad762 (cdm-vaadin): ref #6621 commenting no longer used registrationCreate and regist...
Andreas Kohlbecker
09:09 PM Revision 75338ad3 (cdmlib): ref #7648 common base class AbstractHibernateTaxonGraphProcessor to d...
Andreas Kohlbecker
08:21 PM Revision 9a2d0b71 (cdmlib): ref #7648 allowing to set the TaxonGraphHibernateListener inactive -...
Andreas Kohlbecker
08:21 PM Revision 15d2f2bf (cdmlib): ref #7648 allowing to set the TaxonGraphHibernateListener inactive -...
Andreas Kohlbecker
07:54 PM bug #6303 (Closed): distribution map is moving too fast
Andreas Müller
03:31 PM bug #6303 (Worksforme): distribution map is moving too fast
Works for me, thanks! Gabriele Dröge
07:05 PM Revision 5e4cc7ea (cdmlib): ref #7648 solving session corruption problems in test suite for Taxo...
Andreas Kohlbecker
04:54 PM Revision 196c665f (cdmlib): ref #7648 fixing inconsistency in test data and improving logging
Andreas Kohlbecker
04:18 PM Revision eb82a77d (taxeditor): ref #7063: add base element to named area tree in selection wizard...
Katja Luther
02:48 PM Revision 5e403d42 (cdmlib): ref #7791 using name.titleCache as title for TaxonGraphNodeDTO
Andreas Kohlbecker
02:23 PM feature request #7438: implement citation suggestion in dataportal
done! the E+M portal is already configured accordingly
Andreas Kohlbecker
02:17 PM feature request #7438 (Resolved): implement citation suggestion in dataportal
Applied in changeset commit:cdm-dataportal|1cda248cd9db631b3fd3b34c519f85a820283514. Andreas Kohlbecker
02:22 PM Revision c6bed6e8 (cdm-dataportal): fix #7438 adding margin above secRef line
Andreas Kohlbecker
02:17 PM Revision 1cda248c (cdm-dataportal): fix #7438 secReference optional in separate line above accept...
Andreas Kohlbecker
11:34 AM feature request #7806 (Closed): GfBio Term Search issues
* Only use "search" endpoint
* Use interal_only flag
* Allow wildcard (*) search
* Move ontology abbreviation to t...
Patrick Plitzner
11:29 AM feature request #7805 (Duplicate): GfBio Term Search issues
* use only "search" endpoint and not the "suggest" endpoint
* use "interal_only" ontologies
* Allow '*' wildcard se...
Patrick Plitzner
10:37 AM Revision 5642c43a (taxeditor): ref #7063: optimise setGrayed and check children in distribution s...
Katja Luther
10:37 AM Revision 61cd8ee1 (taxeditor): ref #7063: optimise setGrayed and check children in distribution s...
Katja Luther
09:45 AM feature request #7660 (Resolved): Indicate the row state in a NAT table via symbols
Applied in changeset commit:taxeditor|1f677abd3ea026eab1835f317828d8be5ad6bd65. Patrick Plitzner
09:45 AM Revision 1f677abd (taxeditor): fix #7660 Add icons to bulk editor for deduplication target/candidate
Patrick Plitzner
09:12 AM Revision 528d11e6 (taxeditor): Add @CanExecute method to handler to avoid class cast exception
Patrick Plitzner
08:45 AM Revision 136f91f9 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
08:33 AM Revision e8f10d34 (cdmlib): adapt CdmPermissionClass
Andreas Müller

10/03/2018

12:32 PM feature request #7804 (New): add names of concept relationships as mouse over to synonymy tab
It is hard to remember meanings of all signs of the concept relations. Would be of great help if the name of the rela... Gabriele Dröge

10/02/2018

01:22 AM Revision bc08a1ea (cdmlib): cleanup
Andreas Müller
10:45 PM Revision c919ebc6 (taxeditor): ref #7674 Add icon to mark descriptions with sources
Patrick Plitzner
10:36 PM Revision 0092c621 (taxeditor): Fix matrix selection listener
Patrick Plitzner
09:48 PM Revision 33288925 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
07:06 PM Revision 0962e21b (cdmlib): ref #7791 TaxonGraphService and TaxonGraphController implemented
Andreas Kohlbecker
06:48 PM Revision 97312e07 (cdm-vaadin): ref #7648 registering TaxonGraphHibernateListener for RefistrationUI
Andreas Kohlbecker
06:42 PM Revision 38588c66 (cdmlib): ref #7648 correct handling existing taxa without secReference
Andreas Kohlbecker
06:20 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names...
please review commit:335d7c23
especially
* `PreferencePredicate.TaxonGraphSecRefUuid` predicate ok?
* `Cdm...
Andreas Kohlbecker
06:16 PM Revision 335d7c23 (cdmlib): ref #7648 introducing CdmPreferenceLookup for cached access to the Cd...
- using this Preference in TaxonGraphDaoHibernateImpl and TaxonGraphBeforeTransactionCompleteProcess
- adapting tes...
Andreas Kohlbecker
06:05 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
All names imported only by occurrences: (n=1435)
~~~ sql
SELECT n.nameId, n.nameCache, n.FullNameCache, n.uuid,...
Andreas Müller
03:12 PM Revision 6b3c858a (cdmlib): ref #7648 cleaning up and attempting to fix TaxonGraphService test setup
Andreas Kohlbecker
02:42 PM Revision 3a77d114 (taxeditor): ref #7063: work in progress: selection in treeview of namedAreas f...
Katja Luther
01:06 PM Revision fe54edf5 (taxeditor): Clear Gfbio term synonym list when selection changes
Patrick Plitzner
01:05 PM Revision 2f93dafd (taxeditor): ref #7674 Show details and supplemental data for matrix selection
Patrick Plitzner
12:01 PM Revision 005f3c40 (cdmlib): ref #7648 all TaxonGraph updating done in a BeforeTransactionCompleti...
Andreas Kohlbecker
11:49 AM Revision be7068cc (taxeditor): ref #7063:handle orderedTerms without orderindex and order by lable
Katja Luther
11:49 AM Revision fc9c0563 (taxeditor): ref #7063:handle orderedTerms without orderindex and order by lable
Katja Luther
08:51 AM feature request #7803 (New): Add possibility to change feature of a fact
It should be possible to change the feature of a fact.
This could be done by drag & drop into another group of facts...
Katja Luther

10/01/2018

05:31 PM bug #7676 (Closed): Suchfunktionalität in Registration UI Dateneingabe
Das war ein Problem mit der Verwechslung von TestProduktions und Test-System, guter Hinweis. Ticket geschlossen. Wolf-Henning Kusber
05:25 PM feature request #7802 (Duplicate): Portal-Info when an http-identifier "in preparation" is requested
Ein heikeler Punkt ist, dass im editorial process, spätestens beim Proof-Reading Gutachter*innen oder Herausgeber*inn... Wolf-Henning Kusber
04:23 PM Revision e12facbf (taxeditor): ref #6554 Avoid unnecessary refreshs
Patrick Plitzner
03:23 PM Revision e15e805c (cdmlib): ref #7648 TaxonGraphService as dao and TaxonGraphObserver as TaxonGra...
Andreas Kohlbecker
03:05 PM Revision 2635a611 (taxeditor): minor
Katja Luther
02:36 PM Revision 1e45e654 (taxeditor): ref #7440: filter common name references only when preference is set
Katja Luther
02:22 PM Revision a9faed7f (taxeditor): ref #7440: filter common name references only when preference is set
Katja Luther
01:52 PM Revision 1d76231c (taxeditor): ref #7063: better handling of preferences for distribution editor ...
Katja Luther
11:00 AM Revision e9ca40c5 (cdmlib): ref #7648 TaxonGraphService complete with full set of tests
Andreas Kohlbecker
10:17 AM Revision bb6c8049 (taxeditor): ref #6554 Evaluate expansion state for missing sections
Patrick Plitzner
09:50 AM Revision 00d02c3f (taxeditor): Add missing nattable dependencie to platform feature
Patrick Plitzner
09:49 AM Revision ac4c5087 (taxeditor): ref #6554 Pull up isCached() to abstract data viewer class
Patrick Plitzner
07:19 AM Revision 7a572190 (taxeditor): Merge branch 'develop' into detailsViewCache
Patrick Plitzner

09/29/2018

06:19 PM Revision c436b453 (cdmlib-apps): ref #2764 ref #4822 add WolrdDistCompl to query
Andreas Müller
06:18 PM Revision 981ec2fb (cdmlib-apps): improve commonName import validation
Andreas Müller
06:17 PM Revision c4591f7a (cdmlib-apps): ref #7798 import freetext nameInSource for occurrences best way ...
Andreas Müller
06:14 PM task #7798 (In Progress): [AM, ERS]: Import (freetext) nameInSource correctly
Andreas Müller
04:35 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
In einer nicht ganz kleinen Anzahl Fälle, für die der Name NUR als Freitext vorliegt, nicht als Link, wurde ein entsp... Andreas Müller
03:39 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
im Berlin Model gibt es ja 2 Felder in die man den Namen, der in der Quelle für eine Verbreitungsangabe verwendet wur... Andreas Müller
11:40 AM task #7798 (Resolved): [AM, ERS]: Import (freetext) nameInSource correctly
For occurrence sources and maybe also for common names and facts.
Occurrences:
1. case: freetext exists parall...
Andreas Müller
12:32 PM feature request #7801 (In Progress): AM: Deduplicate references
Many references are duplicates. We could try to deduplicate them during import.
TODO:
* check for parameters l...
Andreas Müller
12:30 PM feature request #7800 (In Progress): Parse preliminary RefDetails
There are >40000 RefDetails imported as the are preliminary. We could try to parse them during import. Andreas Müller
12:04 PM feature request #7799 (Resolved): AM: Parse authorteams
many of them are single persons and also the resulting persons/teams could be parsed probably Andreas Müller
11:19 AM Revision 173bcffb (cdmlib-apps): revert unwanted last commit partly
Andreas Müller
11:16 AM Revision 94853726 (cdmlib-apps): ref #3986 remove It(I) and IT(S) from imported areas
Andreas Müller
11:16 AM Revision 07995a3a (cdmlib-apps): Add label to EM feature tree
Andreas Müller
11:15 AM Revision 31938ede (cdmlib-apps): cleanup
Andreas Müller

09/28/2018

01:26 AM task #7369: Handle taxonomically valueless taxa correctly
ERS (2015-08-15):
zum Thema Rubus lässt sich sagen:
die 19 Taxa, die im Baum direkt unter Plantae included sind...
Andreas Müller
01:20 AM task #7796: [CHECK] Handle Bibliography Name Facts correctly
ERS: (2014-11-08)
diese Angaben in eckigen Klammern hinter der eigentlichen nom.ref. stammen aus dem ILDIS-Import....
Andreas Müller
08:18 PM task #7796: [CHECK] Handle Bibliography Name Facts correctly
~~~ sql
SELECT n.NameCache, n.FullNameCache, n.NomRefFk, pt.PTRefFk, fact.NameFactId, fact.PTNameFk, fact.NameFact, ...
Andreas Müller
08:01 PM task #7796 (Resolved): [CHECK] Handle Bibliography Name Facts correctly
There are 13568 name facts of type "Bibliography" (Cat=3).
These are currently attached to the according names as ...
Andreas Müller
12:48 AM task #7435: Handle also published in correctly
We keep it as a name fact for now. Andreas Müller
12:47 AM task #7435 (In Progress): Handle also published in correctly
Only the remaining 2 comments need to be handled by ERS (see mail). Maybe also some name notes in CDM.
The issue ...
Andreas Müller
08:51 PM task #7435: Handle also published in correctly
... achso, und es gibt auch noch einige, die nicht mit „&“ oder „=“ oder „or“ anfangen, wie die meisten anderen. Ist ... Andreas Müller
12:41 AM feature request #7797: Second nomenclatural reference
ein Einzelfall:
Reynoutria sachalinensis (F. Schmidt) Nakai (7300000): hier steht in den Detail notes
„in T. Mor...
Andreas Müller
12:14 AM feature request #7797: Second nomenclatural reference
Auräumen von E+M:
Daher einige Fragen:
* Können wir bei denen mit Klammern und & die Klammer und das & löschen?...
Andreas Müller
11:48 PM feature request #7797 (New): Second nomenclatural reference
In E+M and other databases second or even more nomenclatural references exist or are required.
This is currently h...
Andreas Müller
11:57 PM bug #7456 (Duplicate): E+M: NameFacts von ILDIS Daten
Duplicates #7435, #7437 and #7796 Andreas Müller
06:55 PM Revision 67861132 (cdmlib): ref #7345: fix dao method to get entities with special marker and pat...
Katja Luther
06:41 PM feature request #7345: [E+M] Common name references selectable in TaxEditor
now the selection dialog searches only for references with marker of markerType commonNameReference and when creating... Katja Luther
06:40 PM Revision 601b8e6e (cdmlib): ref #7345: add dao and service methods to get UuidAndTitleCache marke...
Katja Luther
06:36 PM Revision 93682936 (taxeditor): ref #7345: for common names only common name marked references are...
Katja Luther
06:15 PM feature request #7440 (Resolved): E+M mark common name reference with according marker
The markers were imported Andreas Müller
04:18 PM feature request #6554: The details views are newly created with every change of the focus
The count cache might be also something for the data portals Andreas Müller
04:17 PM feature request #6554: The details views are newly created with every change of the focus
Patrick Plitzner wrote:
> Another bottleneck is
>
> ~~~
> org.hibernate.collection.internal.PersistentSet.size(...
Andreas Müller
02:45 PM feature request #6554: The details views are newly created with every change of the focus
Another bottleneck is
~~~
org.hibernate.collection.internal.PersistentSet.size()
org.hibernate.collection.inter...
Patrick Plitzner
03:59 PM Revision 53f6e21d (cdmlib): avoiding NPE when relationship type = null
Andreas Kohlbecker
03:57 PM Revision d4babfbb (cdmlib): ref #2764 ref #3817 move negative endemism states down in order
Andreas Müller
03:48 PM Revision 80b84cd4 (taxeditor): Merge branch 'develop' into detailsViewCache
# Conflicts:
# eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/AbstractEntityCollectionE...
Patrick Plitzner
03:19 PM Revision a2f11b66 (cdmlib-apps): latest state for EuroMedActivator
Andreas Müller
03:19 PM Revision 9a9b6083 (cdmlib-apps): ref #2764 ref #4822 distinguish EM and other areas status handl...
Andreas Müller
03:18 PM Revision aff7bab0 (taxeditor): ref #7063:fix that the last selection always appears in next field...
Katja Luther
03:18 PM Revision 04f83f13 (taxeditor): ref #7063:fix that the last selection always appears in next field...
Katja Luther
03:15 PM Revision f8a8d72a (cdmlib): ref #4822 use specific annotation type for distribution information
Andreas Müller
03:14 PM Revision e1d2afdb (cdmlib): cleanup
Andreas Müller
03:14 PM Revision 093a2fae (cdmlib): ref #2764 ref #3814 add endemic non and unknown status
Andreas Müller
02:25 PM Revision 69957587 (taxeditor): ref #6554 Evaluate expansion state for remaining elements
Patrick Plitzner
01:54 PM Revision 9d0d72ef (taxeditor): ref #6554 Cache preferred terms in TermManager
Patrick Plitzner
01:53 PM Revision ae2b6d7b (taxeditor): ref #6554 Cache preferred terms in TermManager
Patrick Plitzner
01:25 PM Revision 69955d6c (taxeditor): ref #6554 Revert caching of NameDetailElement
Patrick Plitzner
01:24 PM Revision a8ef58b2 (cdmlib): ref #7648 initial implementation of TaxonGraphService with tests and ...
Andreas Kohlbecker
11:20 AM task #7795: untilis xml DataSets creation without "[NULL]" values
now that we can create datasets without "[NULL]"s we can clean up the test datasets if needed.
If you don't feel lik...
Andreas Kohlbecker
11:14 AM task #7795 (Resolved): untilis xml DataSets creation without "[NULL]" values
Applied in changeset commit:cdmlib|a400c76fcbbe92ca47c01798c378a44bf73a3e4d. Andreas Kohlbecker
11:13 AM task #7795 (Closed): untilis xml DataSets creation without "[NULL]" values
After upgrading to Unitils 3.x it was needed to add "[NULL]" values to the attributed in the xml datasets since the `... Andreas Kohlbecker
11:14 AM Revision a400c76f (cdmlib): fix #7795 untilis xml DataSets can optionally be created without "[NU...
Andreas Kohlbecker
11:14 AM Revision b1e975a8 (cdmlib): minor issue with return type of listToTaxonRelationships() fixed
Andreas Kohlbecker
10:49 AM Revision ed60b90e (taxeditor): ref #6554 Evaluate expansion state at widget creation time
Patrick Plitzner
10:07 AM Revision 515cd3ec (taxeditor): ref #6554 Cache NameDetailElement (experimental)
Patrick Plitzner

09/27/2018

06:24 PM Revision 143dd6ba (taxeditor): ref #6554 Rename ISelectable interface to avoid ambiguity for chec...
Patrick Plitzner
06:21 PM Revision 25fe366b (taxeditor): ref #6554 Implement update() for taxon details view sections
Patrick Plitzner
06:20 PM Revision 1685391e (taxeditor): ref #6554 Fix checkbox selection in update() method
Patrick Plitzner
04:43 PM Revision 90524380 (taxeditor): ref #6554 Evaluate expansion state at widget creation time
# Conflicts:
# eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/e4/details/DetailsViewerE4.java
Patrick Plitzner
03:51 PM Revision 9c8494ea (taxeditor): ref #7063: fix preselection of vocabulary
Katja Luther
03:47 PM task #7455: [Check] Check all markers for correctnes
The publish flag (=false) is related to distributions with no status in BM. This is handled now in #2764 and #4822 Andreas Müller
03:44 PM feature request #7063: Improve the area selection wizard for distribution editor
now the admin can define the vocabulary and in the distribution editor itself the shown areas can be defined.
Katja Luther
03:42 PM Revision 4f25e642 (taxeditor): ref #7063: add vocabulary selection for distribution editor and ar...
Katja Luther
03:27 PM Revision 781b44c5 (cdmlib-apps): ref #7420 updates to phycobank import according to requirements
Andreas Müller
03:05 PM task #7420: Import for higher taxon graph for phycobank
You should check by
~~~ sql
SELECT titleCache, count(*) as n
FROM TaxonName tn
GROUP BY tn.titleCache
Having ...
Andreas Müller
02:59 PM task #7420 (Resolved): Import for higher taxon graph for phycobank
I did run a new import to test.cdm_phycobank. Please check the results.
One issue I can see is that the existing I...
Andreas Müller
02:24 PM task #7420: Import for higher taxon graph for phycobank
Andreas Kohlbecker wrote:
> Hi Andreas,
>
> a small change of the strategy: All Taxa and TaxonRelations which bel...
Andreas Müller
12:37 PM Revision 7cc3798b (taxeditor): rename Database repair functionality to repair functionality
Katja Luther
12:17 PM bug #7794 (Closed): Update TaxonNodeWizard
The taxonnode wizard needs to be updated, the taxon, parent and classification should not be editable and the "open i... Katja Luther
11:35 AM Revision 683272b3 (taxeditor): External link type is only type in details view
Katja Luther
11:25 AM Revision 93f8c270 (taxeditor): fix update hybrid flag
Katja Luther
11:20 AM feature request #7793 (Feedback): Master ticket for E+M editor issues
Following issues should be solved for E+M migration:
Perspectives:
* start perspective with reduced number of w...
Katja Luther
11:01 AM Revision 18b043ef (taxeditor): ref #6554 Implement update() for DeterminationDetailElement
Patrick Plitzner
11:00 AM Revision 81215eb9 (taxeditor): ref #6554 set cached collection to null when entity is null
Patrick Plitzner
10:20 AM Revision 59916c08 (taxeditor): ref #6554 Avoid double setInput() on managedForm
Patrick Plitzner
10:19 AM Revision 2e1e89cd (taxeditor): ref #6554 Cache collection for entity collection sections
Patrick Plitzner
10:02 AM Revision 2a6c978e (taxeditor): fix typos
Katja Luther
09:57 AM Revision e11bc05e (taxeditor): add warning for referencing objects in details view and code cleaning
Katja Luther
09:37 AM Revision 490c3c24 (cdmlib): check for protected caches in cdmlight export
Katja Luther
09:07 AM Revision 57ed8811 (cdmlib): smaller changes in cdmlightexport
Katja Luther
09:06 AM Revision eed70a73 (cdmlib): smaller changes in cdmlightexport
Katja Luther

09/26/2018

11:25 PM Revision 005dd7a3 (cdmlib): cleanup
Andreas Müller
11:14 PM Revision 37bb08e2 (cdmlib-apps): cleanup
Andreas Müller
06:17 PM Revision 9fa90675 (taxeditor): Add missing i18n
Patrick Plitzner
06:16 PM Revision 12fc6c2f (taxeditor): Add missing i18n
Patrick Plitzner
06:16 PM Revision 93246c1b (taxeditor): ref #6554 Fix class cast exception
Patrick Plitzner
05:43 PM task #7420: Import for higher taxon graph for phycobank
Hi Andreas,
a small change of the strategy: All Taxa and TaxonRelations which belong to the classifications-graph ...
Andreas Kohlbecker
04:00 PM Revision 9ef8582f (taxeditor): ref #6554 Cache form section for taxon and derived unit details view
Patrick Plitzner
01:38 PM Revision 4e19a89d (cdm-vaadin): ref #7648 using CdmEntityInstantiator to disentangle the handling...
Andreas Kohlbecker
01:35 PM Revision 3aad942d (cdm-vaadin): using CdmEntity.isPersisted()
Andreas Kohlbecker
12:17 PM Revision 6d636c9e (cdm-vaadin): ref #7648 generalizing bean instantiation in cdm presenters
Andreas Kohlbecker
11:35 AM feature request #6554 (In Progress): The details views are newly created with every change of the...
Patrick Plitzner
11:34 AM feature request #6554: The details views are newly created with every change of the focus
The performance loss is separated in two areas:
1. SWT/UI rendering
* can be optimized by caching the UI widgets...
Patrick Plitzner
10:01 AM Revision 5d2a4b43 (cdmlib): remove unnecessary warning in cdmlight export
Katja Luther

09/25/2018

03:12 PM Revision 3b7513fa (taxeditor): ref #6554 Avoid re-rendering of details view for same selection
Patrick Plitzner
02:05 PM Revision f0fe6915 (cdm-dataportal): ref #7788 displaying registration date and institution - layout
Andreas Kohlbecker
02:04 PM Revision 250f2a96 (cdm-dataportal): ref #7788 displaying registration date and institution - form...
Andreas Kohlbecker
01:56 PM Revision 79052a88 (taxeditor): Fix potential NPE
Patrick Plitzner
01:49 PM bug #7792 (Resolved): Rendering of context menu of factual data view is super slow
Applied in changeset commit:taxeditor|2a6e2626fddd5f6637955f7f7479468c03767929. Patrick Plitzner
01:48 PM bug #7792 (Closed): Rendering of context menu of factual data view is super slow
Patrick Plitzner
01:49 PM Revision 2a6e2626 (taxeditor): fix #7792 Cache global language for rendering speed up
Patrick Plitzner
01:34 PM Revision 959bcc8d (cdmlib-apps): ref #3986 , ref #7346 remove some areas from area import
Andreas Müller
01:05 PM Revision 442f63c3 (cdm-dataportal): ref #7788 displaying registration date and institution - adap...
Andreas Kohlbecker
12:31 PM feature request #7791 (Resolved): Visualize the phycobank higher taxon graph

Visualization as a layered graph which allows to explore the graph interactively
Current concept:
* potenti...
Andreas Kohlbecker
12:00 PM Revision 8da50b71 (taxeditor): ref #6554 Avoid double destruction of details view sections
Patrick Plitzner
11:57 AM Revision 9f2542a8 (cdmlib): ref #7788 adding institutionTitleCache to RegistrationDTO
Andreas Kohlbecker
11:11 AM Revision 4982a63b (cdmlib-apps): cleanup
Andreas Müller
11:09 AM bug #7447: ERS: Fix misapplied name issues for E+M common names.
AM:
...
Lediglich für den letzten Fall „Hieracium glaucinum subsp. glaucinum“ bräuchte ich noch Feedback von di...
Andreas Müller
11:07 AM feature request #7788 (In Progress): Registration page shows registration date and office
Andreas Kohlbecker
11:04 AM Revision 9ccb5ab6 (cdmlib): ref #7783 assuring registrations have an identifier when saved - ada...
Andreas Kohlbecker
10:25 AM Revision b7d7d26d (cdm-dataportal): ref #7788 displaying registration date and institution
Andreas Kohlbecker
10:25 AM Revision 63744291 (cdmlib): ref #7788 adding institution to RegistrationDTO
Andreas Kohlbecker
10:04 AM Revision c8dd76ae (cdm-vaadin): removing commented code
Andreas Kohlbecker
10:02 AM Revision de9f5331 (cdmlib): ref #7783 TaxonNamePart with uuid & assuring registrations have an i...
Andreas Kohlbecker
09:59 AM bug #7783 (Resolved): NamePopupEditor new buttons for genus and species
completed now, please review Andreas Kohlbecker
09:58 AM bug #7630 (Resolved): blocking registration relations get lost after saving adding a typedesignat...
fixed, please review Andreas Kohlbecker
09:57 AM Revision 510ac6e7 (cdm-vaadin): ref #7630 fixing creation of blocking relations (part 2) and assu...
Andreas Kohlbecker
09:55 AM Revision 5055127f (cdm-vaadin): ref #7783, ref #7630 fixing creation of blocking relations (was b...
Andreas Kohlbecker
09:30 AM task #7346 (In Progress): [CHECK] Use separate area vocabulary for common names
Andreas Müller
08:42 AM Revision ead9700e (taxeditor): code cleaning and fix NPE
Katja Luther
07:32 AM Revision ed8e3da9 (cdmlib): ref #7589 Fix initial loading of matrix
Patrick Plitzner
07:09 AM Revision d6455c9e (cdmlib): ref #7775 Fix source information in description titlecache
Patrick Plitzner
 

Also available in: Atom

Add picture from clipboard (Maximum size: 40 MB)