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From 09/13/2018 to 10/12/2018

10/12/2018

10:43 PM task #7758: Manual cleanup after E+M import
Clean up Agent duplicates:
~~~ sql

SELECT osb.id, ab.id, ab.DTYPE, osb.idInSource, osb.idNamespace, ab.titleC...
Andreas Müller
10:25 PM bug #7814 (Resolved): Section in Name and section in Basionym, usability
Applied in changeset commit:cdm-vaadin|23cee55fd9f05d189974daa67201c0f552c216d3. Andreas Kohlbecker
10:22 PM Revision 23cee55f (cdm-vaadin): fix #7814 CdmEditor not readlony with un-persisted entities and h...
Andreas Kohlbecker
06:49 PM Revision 52df026c (cdm-vaadin): ref #7630 fixing creation of blocking relations - removing old p...
Andreas Kohlbecker
06:35 PM Revision 886e3f27 (cdmlib): ref #7648 avoiding NPE during equality check in TaxonGraphBeforeTrans...
Andreas Kohlbecker
06:12 PM Revision 644bd633 (cdmlib): ref #7648 adding links to the ticket as preliminary rudimentary docum...
Andreas Kohlbecker
06:10 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
now the expected functionality I implemented, but we could think about refactoring the `TaxonGraphHibernateListener` ... Andreas Kohlbecker
05:52 PM Revision c621e94f (cdm-vaadin): ref #7648 using runAsAuthenticator for RunAsAdmin to configure Ta...
Andreas Kohlbecker
05:38 PM Revision ee7aab02 (cdmlib): ref #7709 fixing missing runAsAuthenticator for RunAsAdmin, TaxonGrap...
Andreas Kohlbecker
04:57 PM Revision 6623206c (cdmlib): ref #7709 adding missing @CdmHibernateListener config annotation to a...
Andreas Kohlbecker
04:34 PM bug #7822 (Duplicate): RegistrationUI potentially causes memory problems or deadlocks
Currently users complain about very slow response time of the edit-production server.
In order to verify the presu...
Andreas Kohlbecker
03:59 PM Revision dea7d769 (taxeditor): Fix saving of FeatureTreeEditor
Patrick Plitzner
02:31 PM Revision cf26134d (taxeditor): Fix possible ClassCastException
Patrick Plitzner
01:58 PM bug #7818: TaxonRelationshipsDTOTest leaves test environment in unpredictable state
> Also the TermLoader has an unloadAllTerms method. We could call this in the AfterClass method, but ONLY if the term... Andreas Kohlbecker
01:44 PM Revision 6ec42fab (cdm-vaadin): ref #7648 adapting CdmVaadinConfiguration to changes in the Taxon...
Andreas Kohlbecker
01:23 PM Revision 8a790929 (cdmlib): ref #7709 adding REGISTRATION to ClearDBDataSet.xml to solve test pro...
Andreas Kohlbecker
01:23 PM Revision 7df5025d (cdmlib): removing useless annotation
Andreas Kohlbecker
01:13 PM Revision 8d2b7d49 (cdmlib): ref #7793: add preferencePredicates for taxeditor
Katja Luther
12:28 PM Revision 6c5e8c9a (cdmlib): cleanup
Andreas Müller
11:26 AM Revision 469b75d0 (cdm-server): ref #7085 Adjust log path
Patrick Plitzner
11:16 AM Revision 9672401c (cdmlib): ref #7709 JUnit testsuite to reproduce the test failure when running ...
Andreas Kohlbecker
11:15 AM feature request #7821 (New): Use log4j2 for cdmserver logging to avoid having a separate cron job...
Have a look at:
https://logging.apache.org/log4j/2.x/manual/appenders.html#RollingFileAppender
In this case an ...
Patrick Plitzner
11:06 AM bug #6287 (Closed): Rolling cdmserver.log file only contains entries from startup phase
This is fixed by fixing #7085 Patrick Plitzner
11:03 AM bug #7085 (Resolved): cdmserver logfiles getting too big, use DailyRollingFileAppender
The logging is now configured to daily logging i.e. every day a new log file is generated.
The change was done man...
Patrick Plitzner
11:03 AM feature request #7820 (New): Add cron job for deleting cdmserver log files after a specified time...
By fixing #7085 the log files are now generated on a daily base. A cron job should delete the old log files, e.g. aft... Patrick Plitzner
10:58 AM feature request #7819 (New): Log4j.properties file is not properly packaged by the cdmserver inst...
Changes applied to the log4j.properties file in the cdm-server project resources are not reflected in the installed c... Patrick Plitzner
10:47 AM Revision 04656595 (cdm-server): ref #7085 Set logging to daily rollover
Patrick Plitzner
10:24 AM feature request #7793 (In Progress): Master ticket for E+M editor issues
Katja Luther
10:24 AM Revision 3d9956a8 (taxeditor): ref #7793: smaller changes in original sources part
Katja Luther
10:16 AM Revision 05a6f11d (taxeditor): ref #7793: add preference for show taxonnode wizard
Katja Luther
10:09 AM Revision 8c2c3497 (cdmlib): cleanup
Andreas Müller
09:25 AM Revision b154ea92 (cdmlib-apps): include filtered authors in E+M import
Andreas Müller
09:23 AM Revision 274e96c0 (cdmlib-apps): #7799 reduce duplicated sources
Andreas Müller
09:19 AM Revision 8794602e (cdmlib-apps): improve performance for author loading in E+M
Andreas Müller
09:18 AM Revision 72c3d333 (cdm-server): ref #7085 Adjust log path
Patrick Plitzner
09:08 AM task #7796 (In Progress): [CHECK] Handle Bibliography Name Facts correctly
Andreas Müller
09:07 AM Revision 52e6e4b5 (cdmlib-apps): ref #7796 remove ILDIS Bibliographie NameFacts from E+M import
Andreas Müller

10/11/2018

09:39 PM bug #7818: TaxonRelationshipsDTOTest leaves test environment in unpredictable state
There are multiple possibilities.
The simplest is to add a logger saying that this test should not run as first whi...
Andreas Müller
06:30 PM bug #7818 (Feedback): TaxonRelationshipsDTOTest leaves test environment in unpredictable state
Andreas Kohlbecker
04:04 PM bug #7818 (Feedback): TaxonRelationshipsDTOTest leaves test environment in unpredictable state
as stated in #7648#note-14 the `TaxonRelationshipsDTOTest` causes problems for other tests.
e.g.: Running the foll...
Andreas Kohlbecker
06:39 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
The problem described in #7818 was not the actual cause for the test failing in the full suite, another candidate is ... Andreas Kohlbecker
04:08 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Since this is not a problem with the `TaxonGraphHibernateListenerTest` I am creating a new issue: #7818 Andreas Kohlbecker
03:10 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
After moving the `TaxonGraphHibernateListenerTest` into `cdmlib-services` we are again facing problems with test bein... Andreas Kohlbecker
05:13 PM Revision b78e167b (cdm-server): Revert "ref #7085 Use DailyRollingFileAppender (in code)"
This reverts commit 02ef1e472669c30153c94f27084bde7e85e9482b. Patrick Plitzner
04:57 PM Revision 02ef1e47 (cdm-server): ref #7085 Use DailyRollingFileAppender (in code)
Patrick Plitzner
04:43 PM Revision 99c113d2 (cdm-server): ref #7085 Use DailyRollingFileAppender to generate one log per day
Patrick Plitzner
04:24 PM Revision e7c1c8fa (cdmlib): Change system.out to log.info()
Patrick Plitzner
02:01 PM Revision 83f2186a (taxeditor): ref #7793: adapt taxonnode wizard and add menu item to set exclude...
Katja Luther
01:31 PM Revision 4443b90a (taxeditor): ref #7793: adapt taxonnode wizard and add menu item to set unplace...
Katja Luther
12:07 PM Revision e8bf913b (taxeditor): missed fragment.e4xmi for bulk editor
Katja Luther
11:45 AM bug #7817 (New): Team caches should not show '& al.'
If a team is fully defined with all members of the team the caches should not show "at al." if the team is larger the... Andreas Müller
11:24 AM Revision f97f57f1 (taxeditor): set default for SHOW_SPECIMEN preference to true
Katja Luther
10:14 AM feature request #7799: AM: Parse authorteams
Useful scripts
~~~ sql
DECLARE @authorId as int;
Set @authorId = 3395
;
SELECT *
FROM Name n INNER JOIN dbo...
Andreas Müller
09:07 AM Revision f528c666 (cdmlib): ref #7648 free configurable TaxonGraphHibernateListener ready
Andreas Kohlbecker

10/10/2018

06:02 PM Revision 48e27c57 (cdmlib): ref #7648 moving TaxonGraphHibernateListener and related classes into...
Andreas Kohlbecker
05:51 PM Revision f7df0b93 (cdmlib): ref #7648 TaxonGraphHibernateListener as Spring bean configured via t...
Andreas Kohlbecker
05:51 PM Revision fb8a4982 (cdmlib): fixing usage of wrong logger in RunAsAuthenticator
Andreas Kohlbecker
05:51 PM Revision 134e39f0 (cdmlib): sanitizing contoller method doGetIncludedTaxa
Andreas Kohlbecker
03:37 PM Revision 69be3e73 (taxeditor): ref #7793: add preference to hide all specimen related issues
Katja Luther
02:47 PM Revision 87cbb479 (cdmlib): ref #7793: preferencePredicate for mediaview and checklist perspective
Katja Luther
02:01 PM Revision cc4e78d1 (taxeditor): ref #7793: add preference to set checklist perspective as default
Katja Luther
01:58 PM feature request #7648 (Feedback): Create taxonrelation to genus or species when subordinate names...
The `RunAsAuthenticator` is in cdmlib-service and `TaxonGraphBeforeTransactionCompleteProcess` in cdmlib-persistence.... Andreas Kohlbecker
01:49 PM feature request #7648 (In Progress): Create taxonrelation to genus or species when subordinate na...
The taxon graph management processes are currently run in with the current authentication, this causes problems if a... Andreas Kohlbecker
12:54 PM Revision 1ff3a9d2 (cdmlib-apps): cleanup
Andreas Müller
12:53 PM Revision 31e71264 (cdmlib-apps): ref #7799 improve performance of authorteam loading
Andreas Müller
12:52 PM Revision a5e9dc2f (cdmlib-apps): ref #7799 and others reinstall null check
Andreas Müller
12:52 PM Revision 5d979b5d (cdmlib-apps): add euromed production to activator
Andreas Müller
12:51 PM Revision 14295b4b (cdmlib-apps): ref #7798 implement and improve occurrence.nameUsedInSource impo...
Andreas Müller
12:48 PM Revision 640d8847 (cdmlib-apps): split occurrence and occurrence source import
Andreas Müller
12:45 PM Revision 14ec817b (cdmlib-apps): ref #7800 parse preliminary RefDetails (first start)
Andreas Müller
12:38 PM Revision f4b9ac06 (cdmlib-apps): ref #7799 implement author parsing for AuthorTeam and Reference....
Andreas Müller
12:35 PM Revision 4f033523 (cdmlib-apps): cleanup
Andreas Müller
12:17 PM Revision 449cd4da (cdmlib-apps): ref #7346 create areas only if vocabulary does not yet exist
Andreas Müller
12:03 PM bug #7813 (Duplicate): Basionym without journal
Andreas Kohlbecker
10:32 AM Revision 41b21192 (cdmlib-apps): add euromed production to destinations
Andreas Müller
10:30 AM Revision 1b9b7bfd (cdmlib): ref #7799 handle initials for teamOrPerson.getFullTitle
Andreas Müller
10:30 AM Revision c277d1a7 (cdmlib): ref #7799 handle protected titlecache for teamOrPerson.getFullTitle
Andreas Müller
10:30 AM Revision d6fcab17 (cdmlib): cleanup
Andreas Müller
10:06 AM Revision 38029748 (taxeditor): Merge branch 'develop' into detailsViewCache
Patrick Plitzner
09:45 AM task #7816 (New): Handle nomStatus references correctly
In E+M most nomenclatural status have a reference. In most cases it is one of the references 7000000, 7100000, 720000... Andreas Müller
09:27 AM Revision 0e786079 (taxeditor): minor
Katja Luther
09:14 AM Revision 0211eb37 (cdmlib): add new preferencePredicates
Katja Luther
08:53 AM Revision 329e699e (taxeditor): Merge branch 'develop' into detailsViewCache
Patrick Plitzner
08:42 AM task #7785: CdmUserHelper caches permission information
Answer is in the updated description. Andreas Kohlbecker

10/09/2018

06:26 PM task #7785: CdmUserHelper caches permission information
Can you define what functionality is exactly needed from the CdmTransientEntityCacher and why #7709 needs to be fixed... Andreas Müller
05:58 PM bug #7222: Phycobank UI improve labels
To "Start a new registration process either for a name or typification."
Suggestion:
* "Start registering scien...
Andreas Kohlbecker
05:54 PM bug #7222: Phycobank UI improve labels
This issue is almost complete, please see the two open TODOs in the issue description. Andreas Kohlbecker
05:51 PM task #7796: [CHECK] Handle Bibliography Name Facts correctly
ERS: probably not to be imported at all Andreas Müller
05:40 PM feature request #7815 (New): TaxonNameEditor: Hint user on missing citation detail for nomenclatu...
Reference detail, wenn NULL bei Speicherversuch: warning “Please insert the reference page and of figure of the nomen... Andreas Kohlbecker
05:32 PM Revision d98b71cb (cdm-vaadin): ref #7222 modifying the text on nomRef sub sections
Andreas Kohlbecker
05:27 PM Revision b378fe05 (cdm-vaadin): ref #7222 removing the 'Hint:' line in TaxonNameEditor
Andreas Kohlbecker
03:40 PM feature request #7799 (In Progress): AM: Parse authorteams
Andreas Müller
03:18 PM Revision 3b975922 (taxeditor): ref #7793: add DB preferences to hide specimen and import issues a...
Katja Luther
02:58 PM Revision 81641aab (taxeditor): Fix possible IOOB exception
Patrick Plitzner
02:00 PM bug #7814: Section in Name and section in Basionym, usability
Es funktioniert nur die erste Version, die für User etwas fehlerhaft wirkt.
Ich kann bei der Basionym-Referenz mit...
Wolf-Henning Kusber
01:23 PM bug #7814: Section in Name and section in Basionym, usability
2. Screenshot sollte zeigen:
You, Q. & Kociolek, J.P. - in You, Q., Kociolek, J.P. & Wang, X., New Gomphoneis Cleve ...
Wolf-Henning Kusber
01:22 PM bug #7814 (Closed): Section in Name and section in Basionym, usability
Bedienungsfehler möglich, wenn neuer Name und Basionym jeweils eine In-Zitierung haben.
Vorgehen: Referenz eingebe...
Wolf-Henning Kusber
12:55 PM bug #7813 (Duplicate): Basionym without journal
When a new name has a basionym, the basionym reference can be selected or be new.
If the reference is a new article ...
Wolf-Henning Kusber

10/08/2018

03:00 PM task #7420 (Closed): Import for higher taxon graph for phycobank
new ticket for the actual import tasks created: #7811 Andreas Kohlbecker
11:21 AM task #7420: Import for higher taxon graph for phycobank
Ok, can you close the ticket and open a ticket for what ever you stil need? Andreas Müller
11:04 AM task #7420 (Feedback): Import for higher taxon graph for phycobank
I reviewed the imported taxon graph relations. The resulting graph exactly matches the expectations.
The implementat...
Andreas Kohlbecker
08:54 AM task #7420: Import for higher taxon graph for phycobank
all other data import and data cleaning issues are copied to #7808 Andreas Kohlbecker
08:31 AM task #7420: Import for higher taxon graph for phycobank
Andreas Müller wrote:
> You should check by
>
> ~~~ sql
> SELECT titleCache, count(*) as n
> FROM TaxonName tn...
Andreas Kohlbecker
02:59 PM task #7811 (In Progress): Import higher classifications
Andreas Kohlbecker
02:59 PM task #7811 (Resolved): Import higher classifications
The following classifications need to be imported using the import created for #7420
* Frey W. 2015: Syllabus of t...
Andreas Kohlbecker
02:36 PM bug #7777 (Resolved): NPE on login attempt after logout
Applied in changeset commit:cdm-vaadin|3363dabd63329f2f2fd160f5a6c5107ba10a9d2e. Andreas Kohlbecker
02:35 PM Revision 3363dabd (cdm-vaadin): fix #7777 avoiding null access to views of undisposed LoginPresen...
Andreas Kohlbecker
01:55 PM Revision e14cd818 (taxeditor): Merge branch 'develop' into detailsViewCache
# Conflicts:
# eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/name/NameDetailElement.java
Patrick Plitzner
01:30 PM feature request #7810 (In Progress): DB preference to make all Specimen functionality/menu items ...
Katja Luther
01:29 PM feature request #7810 (Feedback): DB preference to make all Specimen functionality/menu items inv...
Katja Luther
01:08 PM feature request #7809 (In Progress): Improve namerelationship handling in editor
Katja Luther
01:08 PM feature request #7809 (Feedback): Improve namerelationship handling in editor
copied from #7793:
Namerelationships should be available for both directions in name editor details view.
We sh...
Katja Luther
12:41 PM Revision c61ea4bc (taxeditor): Remove duplicate methods
Patrick Plitzner
12:40 PM Revision 0dda9c8f (taxeditor): ref #7502 Save table settings when closing bulk editor
Patrick Plitzner
12:36 PM Revision 85bb59b4 (taxongraph-view): oops
Andreas Kohlbecker
12:34 PM Revision d54ba758 (taxongraph-view): ref #7791 using edit-test as datasource and adding more test...
Andreas Kohlbecker
12:29 PM Revision 3005f915 (taxongraph-view): ref #7791 display of the chosen datasource
Andreas Kohlbecker
12:16 PM Revision 271be809 (taxeditor): ref #7502 Fix "de" translation
Patrick Plitzner
12:12 PM Revision ef7ec8ab (taxeditor): ref #7502 Add table settings to search bar
Patrick Plitzner
12:09 PM Revision 6fd483b7 (taxeditor): ref #7502 Remove debug context menu
Patrick Plitzner
11:36 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
Andreas Kohlbecker wrote:
> Do you want me to do something about this issue? I think my task was the according imple...
Andreas Müller
08:23 AM feature request #3990 (Feedback): [DISCUSS] How to implement citation suggestion to each taxon
Do you want me to do something about this issue? I think my task was the according implementation in the data-portal. Andreas Kohlbecker
08:16 AM Revision 29b3b816 (cdmlib): commenting createTestDataSet() @Test annotation
Andreas Kohlbecker
07:57 AM bug #7807 (New): Multiple mobile Usability issues
The new google webmasters console reports multiple mobile Usability issues:
* Text too small to read
* Viewport n...
Andreas Kohlbecker

10/05/2018

06:38 PM Revision bab39794 (taxongraph-view): adding test data file edges.json
Andreas Kohlbecker
06:34 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
implementation complete! Andreas Kohlbecker
06:34 PM Revision 11ab88e8 (cdmlib): ref #7648 automatic management of lower ranked names in the taxon graph
Andreas Kohlbecker
05:56 PM Revision 62b55a78 (taxeditor): ref #7502 Show tooltip for lock icon in header
Patrick Plitzner
05:35 PM Revision 9767c1ad (taxeditor): ref #7502 Show lock icon in header
Patrick Plitzner
03:59 PM Revision 4c90f595 (cdmlib): Merge branch 'feature/#7648' into develop
- TaxonGraphDao
- TaxonGraphController
- TaxonGraphService
- TaxonGraphDTO
- TaxonGraphHibernateListener and proc...
Andreas Kohlbecker
03:58 PM Revision 19628819 (cdmlib): ref #7648 fixing problems in TaxonGraphTest
Andreas Kohlbecker
03:34 PM Revision 849697fa (cdm-vaadin): fixing bug related to creation of new names in RegistrationWorkin...
Andreas Kohlbecker
03:23 PM Revision 91e05af0 (cdmlib): ref #7791 TaxonGraphDao supressing Names associated with Registration...
Andreas Kohlbecker
02:55 PM Revision 4c5284df (cdmlib): ref #7648 moving taxongraph methods from taxonDao to taxonGraphDao
Andreas Kohlbecker
02:48 PM Revision 397b3cd7 (cdm-vaadin): ref #7648 startup option for registrations to create missing taxo...
Andreas Kohlbecker
02:46 PM Revision 9bdd2739 (cdmlib): ref #7791 TaxonGraphNodeDTO with rank labels
Andreas Kohlbecker
02:40 PM Revision 3406fef9 (taxongraph-view): initial version of the taxonGraph visualization using cytosc...
Andreas Kohlbecker
12:32 PM bug #3276 (Closed): NPE for "Move Elements" context menu option
works fine Patrick Plitzner
10:14 AM bug #3276: NPE for "Move Elements" context menu option
The NPE I could not reproduce. The menu entry for move factual data is displayed only for descritions, now.
Why the...
Katja Luther
09:17 AM bug #3276 (Feedback): NPE for "Move Elements" context menu option
I could not reproduce this exception how described above but there is another one.
Now there is also the context m...
Patrick Plitzner
12:28 PM feature request #7502 (Resolved): Add further columns to bulk editor
I implemented all of the mentioned properties as columns.
Please check all types of bulk editors.
Patrick Plitzner
12:27 PM Revision 079534a2 (taxeditor): ref #7502 Show boolean properties in checkboxes
Patrick Plitzner
12:27 PM Revision 521ddbfc (taxeditor): ref #7502 Refactor column generation
- move constants and column properties to bulk editor input Patrick Plitzner
12:27 PM Revision 11ba4bed (taxeditor): ref #7502 Change column order
- Move type column back Patrick Plitzner
12:27 PM Revision de3db973 (taxeditor): ref #7502 code cleaning
Patrick Plitzner
12:27 PM Revision fe289550 (taxeditor): ref #7502 Add name cache and authorship cache for names
Patrick Plitzner
12:27 PM Revision bb67f3ba (taxeditor): ref #7502 Add nomenclatural title to agent bulk editor
Patrick Plitzner
12:27 PM Revision 68befb95 (taxeditor): ref #7502 Add abbrev (nomencl.) cache for references
Patrick Plitzner
12:27 PM Revision d1ccac39 (taxeditor): ref #7502 Add property columns for agents, media and references
Patrick Plitzner
12:27 PM Revision 0e7c806f (taxeditor): ref #7502 Add boolean property columns
Patrick Plitzner
12:27 PM Revision d9ade402 (taxeditor): ref #7502 Add protected cache boolean property columns
Patrick Plitzner
12:27 PM Revision 9d42b88f (taxeditor): ref #7502 Add various occurrence columns
Patrick Plitzner
12:27 PM Revision 091afa8b (taxeditor): ref #7659 Normalize column size
Patrick Plitzner
12:27 PM Revision 27cee58f (taxeditor): ref #7502 Add Name.Genus and epithets
Patrick Plitzner
11:38 AM Revision 43c739f3 (taxeditor): smaller changes for factual data menu
Katja Luther
10:24 AM Revision bd0c87e3 (taxeditor): ref #3276:minor
Katja Luther
10:11 AM Revision feef82e2 (taxeditor): ref #3276:move fact should be displayed only for facts
Katja Luther
10:11 AM Revision ae468727 (taxeditor): fix NPE when no ABCD preference exist when opening preference dialog
Katja Luther
08:47 AM Revision 2984c728 (taxeditor): ref #7806 Make description text scrollabel and multi-line
Patrick Plitzner
08:43 AM feature request #7806 (Resolved): GfBio Term Search issues
Patrick Plitzner
08:42 AM Revision e2c16f04 (taxeditor): ref #7806 Handle wildcard search
Patrick Plitzner
08:42 AM Revision 9f8cd368 (taxeditor): ref #7806 Sort result list
Patrick Plitzner
08:42 AM Revision efab2544 (taxeditor): ref #7806 small label change
Patrick Plitzner
08:42 AM Revision 341c6293 (taxeditor): ref #7806 show search result count
- also remove "Load details" button Patrick Plitzner
08:42 AM Revision b5610bde (taxeditor): ref #7806 Move ontology abbreviation to the end of the term label
Patrick Plitzner
08:42 AM Revision 9e521c57 (taxeditor): ref #7806 Implement selection dialog for ontologies
Patrick Plitzner

10/04/2018

09:53 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
"Session is closed!"-problem is solved now. Andreas Kohlbecker
05:44 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
There is a problem when running the test in the maven test suite. The `TaxonGraphHibernateListenerTest` fails when it... Andreas Kohlbecker
09:44 PM Revision 81c01935 (cdmlib): ref #7648 more pulling up into AbstractHibernateTaxonGraphProcessor
Andreas Kohlbecker
09:21 PM Revision 954ad762 (cdm-vaadin): ref #6621 commenting no longer used registrationCreate and regist...
Andreas Kohlbecker
09:09 PM Revision 75338ad3 (cdmlib): ref #7648 common base class AbstractHibernateTaxonGraphProcessor to d...
Andreas Kohlbecker
08:21 PM Revision 9a2d0b71 (cdmlib): ref #7648 allowing to set the TaxonGraphHibernateListener inactive -...
Andreas Kohlbecker
08:21 PM Revision 15d2f2bf (cdmlib): ref #7648 allowing to set the TaxonGraphHibernateListener inactive -...
Andreas Kohlbecker
07:54 PM bug #6303 (Closed): distribution map is moving too fast
Andreas Müller
03:31 PM bug #6303 (Worksforme): distribution map is moving too fast
Works for me, thanks! Gabriele Dröge
07:05 PM Revision 5e4cc7ea (cdmlib): ref #7648 solving session corruption problems in test suite for Taxo...
Andreas Kohlbecker
04:54 PM Revision 196c665f (cdmlib): ref #7648 fixing inconsistency in test data and improving logging
Andreas Kohlbecker
04:18 PM Revision eb82a77d (taxeditor): ref #7063: add base element to named area tree in selection wizard...
Katja Luther
02:48 PM Revision 5e403d42 (cdmlib): ref #7791 using name.titleCache as title for TaxonGraphNodeDTO
Andreas Kohlbecker
02:23 PM feature request #7438: implement citation suggestion in dataportal
done! the E+M portal is already configured accordingly
Andreas Kohlbecker
02:17 PM feature request #7438 (Resolved): implement citation suggestion in dataportal
Applied in changeset commit:cdm-dataportal|1cda248cd9db631b3fd3b34c519f85a820283514. Andreas Kohlbecker
02:22 PM Revision c6bed6e8 (cdm-dataportal): fix #7438 adding margin above secRef line
Andreas Kohlbecker
02:17 PM Revision 1cda248c (cdm-dataportal): fix #7438 secReference optional in separate line above accept...
Andreas Kohlbecker
11:34 AM feature request #7806 (Closed): GfBio Term Search issues
* Only use "search" endpoint
* Use interal_only flag
* Allow wildcard (*) search
* Move ontology abbreviation to t...
Patrick Plitzner
11:29 AM feature request #7805 (Duplicate): GfBio Term Search issues
* use only "search" endpoint and not the "suggest" endpoint
* use "interal_only" ontologies
* Allow '*' wildcard se...
Patrick Plitzner
10:37 AM Revision 5642c43a (taxeditor): ref #7063: optimise setGrayed and check children in distribution s...
Katja Luther
10:37 AM Revision 61cd8ee1 (taxeditor): ref #7063: optimise setGrayed and check children in distribution s...
Katja Luther
09:45 AM feature request #7660 (Resolved): Indicate the row state in a NAT table via symbols
Applied in changeset commit:taxeditor|1f677abd3ea026eab1835f317828d8be5ad6bd65. Patrick Plitzner
09:45 AM Revision 1f677abd (taxeditor): fix #7660 Add icons to bulk editor for deduplication target/candidate
Patrick Plitzner
09:12 AM Revision 528d11e6 (taxeditor): Add @CanExecute method to handler to avoid class cast exception
Patrick Plitzner
08:45 AM Revision 136f91f9 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
08:33 AM Revision e8f10d34 (cdmlib): adapt CdmPermissionClass
Andreas Müller

10/03/2018

12:32 PM feature request #7804 (New): add names of concept relationships as mouse over to synonymy tab
It is hard to remember meanings of all signs of the concept relations. Would be of great help if the name of the rela... Gabriele Dröge

10/02/2018

01:22 AM Revision bc08a1ea (cdmlib): cleanup
Andreas Müller
10:45 PM Revision c919ebc6 (taxeditor): ref #7674 Add icon to mark descriptions with sources
Patrick Plitzner
10:36 PM Revision 0092c621 (taxeditor): Fix matrix selection listener
Patrick Plitzner
09:48 PM Revision 33288925 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
07:06 PM Revision 0962e21b (cdmlib): ref #7791 TaxonGraphService and TaxonGraphController implemented
Andreas Kohlbecker
06:48 PM Revision 97312e07 (cdm-vaadin): ref #7648 registering TaxonGraphHibernateListener for RefistrationUI
Andreas Kohlbecker
06:42 PM Revision 38588c66 (cdmlib): ref #7648 correct handling existing taxa without secReference
Andreas Kohlbecker
06:20 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names...
please review commit:335d7c23
especially
* `PreferencePredicate.TaxonGraphSecRefUuid` predicate ok?
* `Cdm...
Andreas Kohlbecker
06:16 PM Revision 335d7c23 (cdmlib): ref #7648 introducing CdmPreferenceLookup for cached access to the Cd...
- using this Preference in TaxonGraphDaoHibernateImpl and TaxonGraphBeforeTransactionCompleteProcess
- adapting tes...
Andreas Kohlbecker
06:05 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
All names imported only by occurrences: (n=1435)
~~~ sql
SELECT n.nameId, n.nameCache, n.FullNameCache, n.uuid,...
Andreas Müller
03:12 PM Revision 6b3c858a (cdmlib): ref #7648 cleaning up and attempting to fix TaxonGraphService test setup
Andreas Kohlbecker
02:42 PM Revision 3a77d114 (taxeditor): ref #7063: work in progress: selection in treeview of namedAreas f...
Katja Luther
01:06 PM Revision fe54edf5 (taxeditor): Clear Gfbio term synonym list when selection changes
Patrick Plitzner
01:05 PM Revision 2f93dafd (taxeditor): ref #7674 Show details and supplemental data for matrix selection
Patrick Plitzner
12:01 PM Revision 005f3c40 (cdmlib): ref #7648 all TaxonGraph updating done in a BeforeTransactionCompleti...
Andreas Kohlbecker
11:49 AM Revision fc9c0563 (taxeditor): ref #7063:handle orderedTerms without orderindex and order by lable
Katja Luther
11:49 AM Revision be7068cc (taxeditor): ref #7063:handle orderedTerms without orderindex and order by lable
Katja Luther
08:51 AM feature request #7803 (New): Add possibility to change feature of a fact
It should be possible to change the feature of a fact.
This could be done by drag & drop into another group of facts...
Katja Luther

10/01/2018

05:31 PM bug #7676 (Closed): Suchfunktionalität in Registration UI Dateneingabe
Das war ein Problem mit der Verwechslung von TestProduktions und Test-System, guter Hinweis. Ticket geschlossen. Wolf-Henning Kusber
05:25 PM feature request #7802 (Duplicate): Portal-Info when an http-identifier "in preparation" is requested
Ein heikeler Punkt ist, dass im editorial process, spätestens beim Proof-Reading Gutachter*innen oder Herausgeber*inn... Wolf-Henning Kusber
04:23 PM Revision e12facbf (taxeditor): ref #6554 Avoid unnecessary refreshs
Patrick Plitzner
03:23 PM Revision e15e805c (cdmlib): ref #7648 TaxonGraphService as dao and TaxonGraphObserver as TaxonGra...
Andreas Kohlbecker
03:05 PM Revision 2635a611 (taxeditor): minor
Katja Luther
02:36 PM Revision 1e45e654 (taxeditor): ref #7440: filter common name references only when preference is set
Katja Luther
02:22 PM Revision a9faed7f (taxeditor): ref #7440: filter common name references only when preference is set
Katja Luther
01:52 PM Revision 1d76231c (taxeditor): ref #7063: better handling of preferences for distribution editor ...
Katja Luther
11:00 AM Revision e9ca40c5 (cdmlib): ref #7648 TaxonGraphService complete with full set of tests
Andreas Kohlbecker
10:17 AM Revision bb6c8049 (taxeditor): ref #6554 Evaluate expansion state for missing sections
Patrick Plitzner
09:50 AM Revision 00d02c3f (taxeditor): Add missing nattable dependencie to platform feature
Patrick Plitzner
09:49 AM Revision ac4c5087 (taxeditor): ref #6554 Pull up isCached() to abstract data viewer class
Patrick Plitzner
07:19 AM Revision 7a572190 (taxeditor): Merge branch 'develop' into detailsViewCache
Patrick Plitzner

09/29/2018

06:19 PM Revision c436b453 (cdmlib-apps): ref #2764 ref #4822 add WolrdDistCompl to query
Andreas Müller
06:18 PM Revision 981ec2fb (cdmlib-apps): improve commonName import validation
Andreas Müller
06:17 PM Revision c4591f7a (cdmlib-apps): ref #7798 import freetext nameInSource for occurrences best way ...
Andreas Müller
06:14 PM task #7798 (In Progress): [AM, ERS]: Import (freetext) nameInSource correctly
Andreas Müller
04:35 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
In einer nicht ganz kleinen Anzahl Fälle, für die der Name NUR als Freitext vorliegt, nicht als Link, wurde ein entsp... Andreas Müller
03:39 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
im Berlin Model gibt es ja 2 Felder in die man den Namen, der in der Quelle für eine Verbreitungsangabe verwendet wur... Andreas Müller
11:40 AM task #7798 (Resolved): [AM, ERS]: Import (freetext) nameInSource correctly
For occurrence sources and maybe also for common names and facts.
Occurrences:
1. case: freetext exists parall...
Andreas Müller
12:32 PM feature request #7801 (In Progress): AM: Deduplicate references
Many references are duplicates. We could try to deduplicate them during import.
TODO:
* check for parameters l...
Andreas Müller
12:30 PM feature request #7800 (In Progress): Parse preliminary RefDetails
There are >40000 RefDetails imported as the are preliminary. We could try to parse them during import. Andreas Müller
12:04 PM feature request #7799 (Resolved): AM: Parse authorteams
many of them are single persons and also the resulting persons/teams could be parsed probably Andreas Müller
11:19 AM Revision 173bcffb (cdmlib-apps): revert unwanted last commit partly
Andreas Müller
11:16 AM Revision 94853726 (cdmlib-apps): ref #3986 remove It(I) and IT(S) from imported areas
Andreas Müller
11:16 AM Revision 07995a3a (cdmlib-apps): Add label to EM feature tree
Andreas Müller
11:15 AM Revision 31938ede (cdmlib-apps): cleanup
Andreas Müller

09/28/2018

01:26 AM task #7369: Handle taxonomically valueless taxa correctly
ERS (2015-08-15):
zum Thema Rubus lässt sich sagen:
die 19 Taxa, die im Baum direkt unter Plantae included sind...
Andreas Müller
01:20 AM task #7796: [CHECK] Handle Bibliography Name Facts correctly
ERS: (2014-11-08)
diese Angaben in eckigen Klammern hinter der eigentlichen nom.ref. stammen aus dem ILDIS-Import....
Andreas Müller
08:18 PM task #7796: [CHECK] Handle Bibliography Name Facts correctly
~~~ sql
SELECT n.NameCache, n.FullNameCache, n.NomRefFk, pt.PTRefFk, fact.NameFactId, fact.PTNameFk, fact.NameFact, ...
Andreas Müller
08:01 PM task #7796 (Resolved): [CHECK] Handle Bibliography Name Facts correctly
There are 13568 name facts of type "Bibliography" (Cat=3).
These are currently attached to the according names as ...
Andreas Müller
12:48 AM task #7435: Handle also published in correctly
We keep it as a name fact for now. Andreas Müller
12:47 AM task #7435 (In Progress): Handle also published in correctly
Only the remaining 2 comments need to be handled by ERS (see mail). Maybe also some name notes in CDM.
The issue ...
Andreas Müller
08:51 PM task #7435: Handle also published in correctly
... achso, und es gibt auch noch einige, die nicht mit „&“ oder „=“ oder „or“ anfangen, wie die meisten anderen. Ist ... Andreas Müller
12:41 AM feature request #7797: Second nomenclatural reference
ein Einzelfall:
Reynoutria sachalinensis (F. Schmidt) Nakai (7300000): hier steht in den Detail notes
„in T. Mor...
Andreas Müller
12:14 AM feature request #7797: Second nomenclatural reference
Auräumen von E+M:
Daher einige Fragen:
* Können wir bei denen mit Klammern und & die Klammer und das & löschen?...
Andreas Müller
11:48 PM feature request #7797 (New): Second nomenclatural reference
In E+M and other databases second or even more nomenclatural references exist or are required.
This is currently h...
Andreas Müller
11:57 PM bug #7456 (Duplicate): E+M: NameFacts von ILDIS Daten
Duplicates #7435, #7437 and #7796 Andreas Müller
06:55 PM Revision 67861132 (cdmlib): ref #7345: fix dao method to get entities with special marker and pat...
Katja Luther
06:41 PM feature request #7345: [E+M] Common name references selectable in TaxEditor
now the selection dialog searches only for references with marker of markerType commonNameReference and when creating... Katja Luther
06:40 PM Revision 601b8e6e (cdmlib): ref #7345: add dao and service methods to get UuidAndTitleCache marke...
Katja Luther
06:36 PM Revision 93682936 (taxeditor): ref #7345: for common names only common name marked references are...
Katja Luther
06:15 PM feature request #7440 (Resolved): E+M mark common name reference with according marker
The markers were imported Andreas Müller
04:18 PM feature request #6554: The details views are newly created with every change of the focus
The count cache might be also something for the data portals Andreas Müller
04:17 PM feature request #6554: The details views are newly created with every change of the focus
Patrick Plitzner wrote:
> Another bottleneck is
>
> ~~~
> org.hibernate.collection.internal.PersistentSet.size(...
Andreas Müller
02:45 PM feature request #6554: The details views are newly created with every change of the focus
Another bottleneck is
~~~
org.hibernate.collection.internal.PersistentSet.size()
org.hibernate.collection.inter...
Patrick Plitzner
03:59 PM Revision 53f6e21d (cdmlib): avoiding NPE when relationship type = null
Andreas Kohlbecker
03:57 PM Revision d4babfbb (cdmlib): ref #2764 ref #3817 move negative endemism states down in order
Andreas Müller
03:48 PM Revision 80b84cd4 (taxeditor): Merge branch 'develop' into detailsViewCache
# Conflicts:
# eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/AbstractEntityCollectionE...
Patrick Plitzner
03:19 PM Revision a2f11b66 (cdmlib-apps): latest state for EuroMedActivator
Andreas Müller
03:19 PM Revision 9a9b6083 (cdmlib-apps): ref #2764 ref #4822 distinguish EM and other areas status handl...
Andreas Müller
03:18 PM Revision aff7bab0 (taxeditor): ref #7063:fix that the last selection always appears in next field...
Katja Luther
03:18 PM Revision 04f83f13 (taxeditor): ref #7063:fix that the last selection always appears in next field...
Katja Luther
03:15 PM Revision f8a8d72a (cdmlib): ref #4822 use specific annotation type for distribution information
Andreas Müller
03:14 PM Revision e1d2afdb (cdmlib): cleanup
Andreas Müller
03:14 PM Revision 093a2fae (cdmlib): ref #2764 ref #3814 add endemic non and unknown status
Andreas Müller
02:25 PM Revision 69957587 (taxeditor): ref #6554 Evaluate expansion state for remaining elements
Patrick Plitzner
01:54 PM Revision 9d0d72ef (taxeditor): ref #6554 Cache preferred terms in TermManager
Patrick Plitzner
01:53 PM Revision ae2b6d7b (taxeditor): ref #6554 Cache preferred terms in TermManager
Patrick Plitzner
01:25 PM Revision 69955d6c (taxeditor): ref #6554 Revert caching of NameDetailElement
Patrick Plitzner
01:24 PM Revision a8ef58b2 (cdmlib): ref #7648 initial implementation of TaxonGraphService with tests and ...
Andreas Kohlbecker
11:20 AM task #7795: untilis xml DataSets creation without "[NULL]" values
now that we can create datasets without "[NULL]"s we can clean up the test datasets if needed.
If you don't feel lik...
Andreas Kohlbecker
11:14 AM task #7795 (Resolved): untilis xml DataSets creation without "[NULL]" values
Applied in changeset commit:cdmlib|a400c76fcbbe92ca47c01798c378a44bf73a3e4d. Andreas Kohlbecker
11:13 AM task #7795 (Closed): untilis xml DataSets creation without "[NULL]" values
After upgrading to Unitils 3.x it was needed to add "[NULL]" values to the attributed in the xml datasets since the `... Andreas Kohlbecker
11:14 AM Revision a400c76f (cdmlib): fix #7795 untilis xml DataSets can optionally be created without "[NU...
Andreas Kohlbecker
11:14 AM Revision b1e975a8 (cdmlib): minor issue with return type of listToTaxonRelationships() fixed
Andreas Kohlbecker
10:49 AM Revision ed60b90e (taxeditor): ref #6554 Evaluate expansion state at widget creation time
Patrick Plitzner
10:07 AM Revision 515cd3ec (taxeditor): ref #6554 Cache NameDetailElement (experimental)
Patrick Plitzner

09/27/2018

06:24 PM Revision 143dd6ba (taxeditor): ref #6554 Rename ISelectable interface to avoid ambiguity for chec...
Patrick Plitzner
06:21 PM Revision 25fe366b (taxeditor): ref #6554 Implement update() for taxon details view sections
Patrick Plitzner
06:20 PM Revision 1685391e (taxeditor): ref #6554 Fix checkbox selection in update() method
Patrick Plitzner
04:43 PM Revision 90524380 (taxeditor): ref #6554 Evaluate expansion state at widget creation time
# Conflicts:
# eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/e4/details/DetailsViewerE4.java
Patrick Plitzner
03:51 PM Revision 9c8494ea (taxeditor): ref #7063: fix preselection of vocabulary
Katja Luther
03:47 PM task #7455: [Check] Check all markers for correctnes
The publish flag (=false) is related to distributions with no status in BM. This is handled now in #2764 and #4822 Andreas Müller
03:44 PM feature request #7063: Improve the area selection wizard for distribution editor
now the admin can define the vocabulary and in the distribution editor itself the shown areas can be defined.
Katja Luther
03:42 PM Revision 4f25e642 (taxeditor): ref #7063: add vocabulary selection for distribution editor and ar...
Katja Luther
03:27 PM Revision 781b44c5 (cdmlib-apps): ref #7420 updates to phycobank import according to requirements
Andreas Müller
03:05 PM task #7420: Import for higher taxon graph for phycobank
You should check by
~~~ sql
SELECT titleCache, count(*) as n
FROM TaxonName tn
GROUP BY tn.titleCache
Having ...
Andreas Müller
02:59 PM task #7420 (Resolved): Import for higher taxon graph for phycobank
I did run a new import to test.cdm_phycobank. Please check the results.
One issue I can see is that the existing I...
Andreas Müller
02:24 PM task #7420: Import for higher taxon graph for phycobank
Andreas Kohlbecker wrote:
> Hi Andreas,
>
> a small change of the strategy: All Taxa and TaxonRelations which bel...
Andreas Müller
12:37 PM Revision 7cc3798b (taxeditor): rename Database repair functionality to repair functionality
Katja Luther
12:17 PM bug #7794 (Closed): Update TaxonNodeWizard
The taxonnode wizard needs to be updated, the taxon, parent and classification should not be editable and the "open i... Katja Luther
11:35 AM Revision 683272b3 (taxeditor): External link type is only type in details view
Katja Luther
11:25 AM Revision 93f8c270 (taxeditor): fix update hybrid flag
Katja Luther
11:20 AM feature request #7793 (Feedback): Master ticket for E+M editor issues
Following issues should be solved for E+M migration:
Perspectives:
* start perspective with reduced number of w...
Katja Luther
11:01 AM Revision 18b043ef (taxeditor): ref #6554 Implement update() for DeterminationDetailElement
Patrick Plitzner
11:00 AM Revision 81215eb9 (taxeditor): ref #6554 set cached collection to null when entity is null
Patrick Plitzner
10:20 AM Revision 59916c08 (taxeditor): ref #6554 Avoid double setInput() on managedForm
Patrick Plitzner
10:19 AM Revision 2e1e89cd (taxeditor): ref #6554 Cache collection for entity collection sections
Patrick Plitzner
10:02 AM Revision 2a6c978e (taxeditor): fix typos
Katja Luther
09:57 AM Revision e11bc05e (taxeditor): add warning for referencing objects in details view and code cleaning
Katja Luther
09:37 AM Revision 490c3c24 (cdmlib): check for protected caches in cdmlight export
Katja Luther
09:07 AM Revision 57ed8811 (cdmlib): smaller changes in cdmlightexport
Katja Luther
09:06 AM Revision eed70a73 (cdmlib): smaller changes in cdmlightexport
Katja Luther

09/26/2018

11:25 PM Revision 005dd7a3 (cdmlib): cleanup
Andreas Müller
11:14 PM Revision 37bb08e2 (cdmlib-apps): cleanup
Andreas Müller
06:17 PM Revision 9fa90675 (taxeditor): Add missing i18n
Patrick Plitzner
06:16 PM Revision 12fc6c2f (taxeditor): Add missing i18n
Patrick Plitzner
06:16 PM Revision 93246c1b (taxeditor): ref #6554 Fix class cast exception
Patrick Plitzner
05:43 PM task #7420: Import for higher taxon graph for phycobank
Hi Andreas,
a small change of the strategy: All Taxa and TaxonRelations which belong to the classifications-graph ...
Andreas Kohlbecker
04:00 PM Revision 9ef8582f (taxeditor): ref #6554 Cache form section for taxon and derived unit details view
Patrick Plitzner
01:38 PM Revision 4e19a89d (cdm-vaadin): ref #7648 using CdmEntityInstantiator to disentangle the handling...
Andreas Kohlbecker
01:35 PM Revision 3aad942d (cdm-vaadin): using CdmEntity.isPersisted()
Andreas Kohlbecker
12:17 PM Revision 6d636c9e (cdm-vaadin): ref #7648 generalizing bean instantiation in cdm presenters
Andreas Kohlbecker
11:35 AM feature request #6554 (In Progress): The details views are newly created with every change of the...
Patrick Plitzner
11:34 AM feature request #6554: The details views are newly created with every change of the focus
The performance loss is separated in two areas:
1. SWT/UI rendering
* can be optimized by caching the UI widgets...
Patrick Plitzner
10:01 AM Revision 5d2a4b43 (cdmlib): remove unnecessary warning in cdmlight export
Katja Luther

09/25/2018

03:12 PM Revision 3b7513fa (taxeditor): ref #6554 Avoid re-rendering of details view for same selection
Patrick Plitzner
02:05 PM Revision f0fe6915 (cdm-dataportal): ref #7788 displaying registration date and institution - layout
Andreas Kohlbecker
02:04 PM Revision 250f2a96 (cdm-dataportal): ref #7788 displaying registration date and institution - form...
Andreas Kohlbecker
01:56 PM Revision 79052a88 (taxeditor): Fix potential NPE
Patrick Plitzner
01:49 PM bug #7792 (Resolved): Rendering of context menu of factual data view is super slow
Applied in changeset commit:taxeditor|2a6e2626fddd5f6637955f7f7479468c03767929. Patrick Plitzner
01:48 PM bug #7792 (Closed): Rendering of context menu of factual data view is super slow
Patrick Plitzner
01:49 PM Revision 2a6e2626 (taxeditor): fix #7792 Cache global language for rendering speed up
Patrick Plitzner
01:34 PM Revision 959bcc8d (cdmlib-apps): ref #3986 , ref #7346 remove some areas from area import
Andreas Müller
01:05 PM Revision 442f63c3 (cdm-dataportal): ref #7788 displaying registration date and institution - adap...
Andreas Kohlbecker
12:31 PM feature request #7791 (Resolved): Visualize the phycobank higher taxon graph

Visualization as a layered graph which allows to explore the graph interactively
Current concept:
* potenti...
Andreas Kohlbecker
12:00 PM Revision 8da50b71 (taxeditor): ref #6554 Avoid double destruction of details view sections
Patrick Plitzner
11:57 AM Revision 9f2542a8 (cdmlib): ref #7788 adding institutionTitleCache to RegistrationDTO
Andreas Kohlbecker
11:11 AM Revision 4982a63b (cdmlib-apps): cleanup
Andreas Müller
11:09 AM bug #7447: ERS: Fix misapplied name issues for E+M common names.
AM:
...
Lediglich für den letzten Fall „Hieracium glaucinum subsp. glaucinum“ bräuchte ich noch Feedback von di...
Andreas Müller
11:07 AM feature request #7788 (In Progress): Registration page shows registration date and office
Andreas Kohlbecker
11:04 AM Revision 9ccb5ab6 (cdmlib): ref #7783 assuring registrations have an identifier when saved - ada...
Andreas Kohlbecker
10:25 AM Revision b7d7d26d (cdm-dataportal): ref #7788 displaying registration date and institution
Andreas Kohlbecker
10:25 AM Revision 63744291 (cdmlib): ref #7788 adding institution to RegistrationDTO
Andreas Kohlbecker
10:04 AM Revision c8dd76ae (cdm-vaadin): removing commented code
Andreas Kohlbecker
10:02 AM Revision de9f5331 (cdmlib): ref #7783 TaxonNamePart with uuid & assuring registrations have an i...
Andreas Kohlbecker
09:59 AM bug #7783 (Resolved): NamePopupEditor new buttons for genus and species
completed now, please review Andreas Kohlbecker
09:58 AM bug #7630 (Resolved): blocking registration relations get lost after saving adding a typedesignat...
fixed, please review Andreas Kohlbecker
09:57 AM Revision 510ac6e7 (cdm-vaadin): ref #7630 fixing creation of blocking relations (part 2) and assu...
Andreas Kohlbecker
09:55 AM Revision 5055127f (cdm-vaadin): ref #7783, ref #7630 fixing creation of blocking relations (was b...
Andreas Kohlbecker
09:30 AM task #7346 (In Progress): [CHECK] Use separate area vocabulary for common names
Andreas Müller
08:42 AM Revision ead9700e (taxeditor): code cleaning and fix NPE
Katja Luther
07:32 AM Revision ed8e3da9 (cdmlib): ref #7589 Fix initial loading of matrix
Patrick Plitzner
07:09 AM Revision d6455c9e (cdmlib): ref #7775 Fix source information in description titlecache
Patrick Plitzner

09/24/2018

09:25 PM Revision 8ef74e91 (cdmlib-apps): ref #7346 use E+M area vocabulary for common names
Andreas Müller
05:48 PM Revision 98c2f401 (cdm-vaadin): ref #7783 using WeaklyRelatedEntityCombobox in TaxonNameEditor: a...
Andreas Kohlbecker
03:36 PM Revision 6ed2f1ef (taxeditor): missing english translation
Katja Luther
03:30 PM Revision 958e78a4 (taxeditor): ref #7761: add invalid designation and adapt right click menu for ...
Katja Luther
03:30 PM feature request #7790 (New): [DISCUSS] E+M: Language-Area Mapping
E+M in BM allows a mapping for all languages to the available area (or the other way round - need to check in BM edit... Andreas Müller
03:04 PM task #7789: redirect URIs referencing Drupal nodes to lowercase URI
This could be implemented by adding an according redirect rule to the Drupal `.htaccess` file with the following dire... Andreas Kohlbecker
02:59 PM task #7789 (New): redirect URIs referencing Drupal nodes to lowercase URI
Ich habe mich also nochmals eingehender mit diesem Thema beschäftigt:

Nach dem was in https://stackoverflow.com/q...
Andreas Kohlbecker
02:50 PM Revision 2194a7c6 (taxeditor): merge fragment.e4.xmi
Katja Luther
02:48 PM bug #7745: Subtree filter for dataportal services
For the polytomous keys the following webservices need to be filtered by the subTree to avoid unpublished taxa showin... Andreas Kohlbecker
02:48 PM bug #7745: Subtree filter for dataportal services
Andreas Müller wrote:
> So can we close the ticket?
You were too fast ;-)
Andreas Kohlbecker
02:44 PM bug #7745: Subtree filter for dataportal services
So can we close the ticket? Andreas Müller
02:33 PM bug #7745: Subtree filter for dataportal services
To the issues 1) - 3) reported in #7745#note-17:
1) You are right, this web service behaves ok.
2) I reported t...
Andreas Kohlbecker
01:21 PM Revision 7ccb7304 (taxeditor): ref #7424: after updating name editor set menu to all containers t...
Katja Luther
12:29 PM feature request #7502 (In Progress): Add further columns to bulk editor
Patrick Plitzner wrote:
> @Andreas: Please review the first implementation of this for id and uuid
Looks ok.
...
Andreas Müller
12:14 PM Revision 2d25257c (cdm-vaadin): ref #7783 implementing WeaklyRelatedEntityCombobox according Pagi...
Andreas Kohlbecker
11:51 AM feature request #7775 (Resolved): Factual Data label issue
Applied in changeset commit:cdmlib|3c0cadbbcdb4d44a395a6ab3131090ef811eac3f. Patrick Plitzner
11:50 AM Revision 3c0cadbb (cdmlib): fix #7775 Add source information to description titlecache
Patrick Plitzner
11:45 AM feature request #7788 (Closed): Registration page shows registration date and office
Registration page needs to show the registration date and office Andreas Kohlbecker
08:08 AM bug #7787: default occurrence view shows media also in expanded state
Vielleicht sollte man das per java-script machen, das Bild ist auf der Seite schon vorhanden und müsste nur an eine a... Andreas Kohlbecker
08:08 AM bug #7787: default occurrence view shows media also in expanded state
[Katja]:
ich hatte mir das ja auch mal angesehen und soweit ich das verstanden habe, sind die Bilder sozusagen die...
Andreas Kohlbecker
08:07 AM bug #7787 (New): default occurrence view shows media also in expanded state
Bilder werden nur im collapsten Zustand angezeigt werden, expanded kann man sie nicht sehen.
![](picture982-1.pn...
Andreas Kohlbecker

09/22/2018

02:22 PM feature request #7440 (In Progress): E+M mark common name reference with according marker
Done. Still needs to be tested. Andreas Müller
02:20 PM feature request #7769: E+M: Handle postulated parental species as taxon extensions
Applied in changeset commit:cdmlib-apps|59d588d3618128a6980f1d9bbf10e840f23e049c. Andreas Müller
02:20 PM Revision 853106aa (cdmlib-apps): ref #7440 add common name marker to common name references
Andreas Müller
02:19 PM Revision 4b241d73 (cdmlib-apps): cleanup
Andreas Müller
02:15 PM Revision a077e729 (cdmlib): add parental species ext to BerlinModelTransformer
Andreas Müller
02:14 PM Revision 32eec7cd (cdmlib): cleanup
Andreas Müller
01:24 PM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be r...
~~~
SELECT DISTINCT SourceNumber2Ref.*, r.*
FROM SourceNumber2Ref INNER JOIN
Reference r ON SourceNumber2Re...
Andreas Müller
08:26 AM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be r...
bei den OccurrenceSources sind ein paar kaputt gegangen, vermutlich weil die Identifier hier nicht als Zahlen sondern... Andreas Müller
08:25 AM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be r...
irgendwas ist auch noch seltsam bei folgenden Taxa:
Juncus acutiflorus Hoffm.
Juncus acutus L.
Juncus anceps Lah...
Andreas Müller

09/21/2018

05:36 PM bug #7786 (In Progress): ERS: Try to solve those occurrence sources for which the reference numbe...
Andreas Müller
05:35 PM bug #7786 (Resolved): ERS: Try to solve those occurrence sources for which the reference number c...
Some of them only have a trailing whitespace problem and can be found by
~~~
SELECT *
FROM emOccurrenceSource
...
Andreas Müller
04:33 PM task #7785: CdmUserHelper caches permission information
Can the cache of the presenter be used in the CdmUserHelper to avoid loading the entities again? Andreas Kohlbecker
04:25 PM task #7785 (Closed): CdmUserHelper caches permission information
CdmUserHelper has been identified being hostspot in the cpu time analysis:
![](picture159-1.png)
Caching entit...
Andreas Kohlbecker
03:45 PM task #7784 (Closed): deduplicate and harmonize ClassificationController methods
Andreas Kohlbecker
03:45 PM task #7784 (Resolved): deduplicate and harmonize ClassificationController methods
Applied in changeset commit:cdmlib|c3be000f7a4dee3e84481b0d1a020109cdf9ad59. Andreas Kohlbecker
03:45 PM task #7784 (Closed): deduplicate and harmonize ClassificationController methods
* ClassificationPortalController needs to be a subclass of ClassificationController
* duplicate and deprecated metho...
Andreas Kohlbecker
03:45 PM Revision c3be000f (cdmlib): fix #7784 deduplicating and harmonizing ClassificationController methods
Andreas Kohlbecker
01:25 PM bug #7783 (Closed): NamePopupEditor new buttons for genus and species
For species the genus can only be selected from existing genera. In order to use a not existing genus it is currently... Andreas Kohlbecker
01:17 PM feature request #7782 (New): for a new synonym it should be possible to change it to missaplied n...
As comfortable way to create a MAN it would be good that changeToMisappliedName can be done for not persisted synonym... Katja Luther
01:10 PM bug #7424: right click menu does not show up in name editor
the problem appears because the menu is set to disposed when a groupContainer is removed. Katja Luther
01:01 PM feature request #7594 (Closed): RegistrationWorkingsetEditor click on new serveral times
problem solved, please review. Andreas Kohlbecker
01:00 PM feature request #7594 (Resolved): RegistrationWorkingsetEditor click on new serveral times
Applied in changeset commit:cdm-vaadin|edce7749ded3f3f7f3860106f45235532afe09a2. Andreas Kohlbecker
01:00 PM Revision edce7749 (cdm-vaadin): fix #7594 RegistrationWorkingsetEditor new name button disbled wh...
Andreas Kohlbecker
11:45 AM bug #7187: ReferenceEditor: saving with DOI casues exception
bitte review Andreas Kohlbecker
11:44 AM feature request #3234 (Closed): implement cdm service method to collect SpecimensAndObservations ...
Andreas Kohlbecker
11:42 AM bug #7723 (Resolved): PhycoBank unpublished data must not be visible in Portal
Issue fixed, only PUBLISHED registrations are visible now, please review. Andreas Kohlbecker
11:14 AM Revision b9188a94 (cdmlib): ref #7723 adding missing permission check to RegistrationServiceImpl ...
Andreas Kohlbecker
10:40 AM bug #7781 (New): original spelling is missing for accepted taxon in taxon page
Hallo,
im Portal wird das “as ....“ nicht angezeigt
Beispiel:
![](picture440-1.png)
http://caryophyllale...
Andreas Kohlbecker
09:37 AM feature request #7780 (New): improve order of nomenclatural status types
the order of nomenclatural status type should represent the importance of the type. Types used often, should be at th... Katja Luther
08:50 AM bug #7779 (Closed): swagger UI broken after springfox-swagger2 upgrade
after upgrading springfox-swagger2 to version 2.6.1 (commit:4518f4b) the swagger UI is broken.
Presumably an upgrad...
Andreas Kohlbecker

09/20/2018

12:10 AM bug #7449 (Resolved): E+M: Import common names with no regionFk correctly
The empty ones are all common names for ILDIS taxa:
~~~
SELECT n.FullNameCache, n.NameCache, cn.*
FROM emCommonN...
Andreas Müller
11:44 PM feature request #7769 (Resolved): E+M: Handle postulated parental species as taxon extensions
Ticket is fixed. Remaining issue is a data issue. Needs to be fixed by ERS. Andreas Müller
11:43 PM feature request #7769: E+M: Handle postulated parental species as taxon extensions
der Import für die postulated … ist fertig. Es gibt ein paar Fälle, bei denen die Namen nicht kursiv gesetzt sind. We... Andreas Müller
03:57 PM feature request #7769 (In Progress): E+M: Handle postulated parental species as taxon extensions
Andreas Müller
11:39 PM bug #7424: right click menu does not show up in name editor
Add this to current milestone as it is critical (often mentioned by users) Andreas Müller
06:11 PM Revision 621f2ae0 (cdm-dataportal): ref #7723 supressing un-published registrations in the refere...
Andreas Kohlbecker
06:10 PM Revision ae472365 (cdm-dataportal): ref #7723 supressing un-published registrations in the refere...
Andreas Kohlbecker
03:58 PM task #7455 (In Progress): [Check] Check all markers for correctnes
Andreas Müller
03:03 PM Revision 95116a15 (taxeditor): ref #7775 i18n
Patrick Plitzner
03:03 PM Revision 1d4ca46e (taxeditor): ref #7775 Renamed context menu label
Patrick Plitzner
03:03 PM Revision d9fbbe86 (taxeditor): ref #7775 Add option "Create new factual data set with sources"
Patrick Plitzner
01:56 PM bug #7778 (Closed): identifier links missing in taxon relations footnotes
Andreas Kohlbecker
01:56 PM bug #7778 (Resolved): identifier links missing in taxon relations footnotes
Applied in changeset commit:cdm-dataportal|c714960cc180ca547c9a9ddb25776c48e06f6141. Andreas Kohlbecker
12:12 PM bug #7778 (Closed): identifier links missing in taxon relations footnotes
identifier links missing when a footnote is created for taxon relations
see e.g.: http://caryophyllales.org/nepe...
Andreas Kohlbecker
01:56 PM Revision c714960c (cdm-dataportal): fix #7778 display of doi and other identifiers in taxon relat...
Andreas Kohlbecker
12:27 PM bug #3276: NPE for "Move Elements" context menu option
please review Katja Luther
12:26 PM bug #3276 (Resolved): NPE for "Move Elements" context menu option
Applied in changeset commit:taxeditor|90f49fe41d5816b7fce308a5200a950550758e1e. Katja Luther
12:25 PM Revision 90f49fe4 (taxeditor): fix #3276: avoid exception when moving unpersisted facts
Katja Luther
12:15 PM Revision 7e1f5d18 (cdm-dataportal): fix #7742 unsubscribing other beans from event bus on dispose()
Andreas Kohlbecker
12:12 PM Revision 8e15d0fb (cdm-dataportal): ref #7599: create link and render array when description is U...
Katja Luther
12:04 PM Revision 58c1a035 (cdm-dataportal): revert last changes
Katja Luther
11:27 AM bug #7773 (Resolved): when changing rank the hybrid section is empty
Katja Luther
11:27 AM bug #7773 (Closed): when changing rank the hybrid section is empty
please review Katja Luther
11:25 AM bug #7773 (Resolved): when changing rank the hybrid section is empty
Applied in changeset commit:taxeditor|2e765343e89b57f860f7661ad06385608b991d94. Katja Luther
11:26 AM feature request #2444 (Resolved): Disable binom and trinom hybrid flag when epithets are not avai...
the problem of disappearing hybrid section is solved, so we can close this ticket as well.
please review
Katja Luther
11:25 AM Revision 2e765343 (taxeditor): fix #7773: update only the checkboxes state when changing rank
Katja Luther
11:14 AM bug #7777 (Closed): NPE on login attempt after logout
login attempt after logging out
~~~
Caused by: java.lang.NullPointerException
at eu.etaxonomy.cdm.vaadin.view.L...
Andreas Kohlbecker
10:42 AM Revision f1239704 (cdm-dataportal): ref #7599: fix problem with links in descriptions
Katja Luther
09:41 AM feature request #7776 (Resolved): Add source of descriptive data set to SpecimenDescriptions adde...
Applied in changeset commit:cdmlib|74ab8c12e9283ca97969609df026ec62708aa9f5. Patrick Plitzner
08:12 AM feature request #7776 (Resolved): Add source of descriptive data set to SpecimenDescriptions adde...
If a SpecimenDescription is added to the descriptive data set the source of the data set should be copied to the spec... Patrick Plitzner
09:37 AM Revision d95dc737 (taxeditor): fix #7776 Add sources to details view for specimen descriptions
Patrick Plitzner
08:49 AM Revision 6d1422f1 (taxeditor): fix #7776 Adapt to service layer change
Patrick Plitzner
08:44 AM feature request #7599: treeView for specimen data in dataportal
Andreas Kohlbecker wrote:
> 2)
>
> diese neue Funktionalität in `modules/cdm_dataportal/includes/pre-drupal8.inc...
Andreas Kohlbecker
08:44 AM Revision 74ab8c12 (cdmlib): fix #7776 Add descriptive data set sources to specimen descriptions
Patrick Plitzner
08:10 AM feature request #7775 (Closed): Factual Data label issue
* ~~change context menu entry for creation of a new description to "New Factual Data Set"~~
* ~~add alternative for ...
Patrick Plitzner
07:54 AM feature request #7774 (New): Show description source for description elements
In the details view the list of sources of description elements should contain the source of the description but it s... Patrick Plitzner

09/19/2018

04:24 PM feature request #7502 (Feedback): Add further columns to bulk editor
@Andreas: Please review the first implementation of this for id and uuid Patrick Plitzner
04:23 PM Revision bcc1d18a (taxeditor): ref #7502 Add option to hide and show columns
Patrick Plitzner
04:20 PM Revision 436a661e (taxeditor): ref #2444: enable and disable binom/trinom flag
Katja Luther
04:18 PM feature request #2444 (In Progress): Disable binom and trinom hybrid flag when epithets are not a...
this is implemented now, but there is still a bug see #7773 Katja Luther
04:15 PM Revision 92a795af (taxeditor): ref #7502 Add id and uuid to bulk editor
Patrick Plitzner
04:12 PM bug #7773 (Closed): when changing rank the hybrid section is empty
When changing the rank the hybrid section is updated, but after this the section is empty. Resize or close and open t... Katja Luther
03:14 PM task #2406: DeterminationEventElement is lacking references
Now, you can select the determination event to edit its supplemental data.
However, it is not possible anymore to se...
Patrick Plitzner
03:07 PM task #2406 (Resolved): DeterminationEventElement is lacking references
Applied in changeset commit:taxeditor|097d348b1b100faae233b8574a4a090de48fdbdd. Patrick Plitzner
03:07 PM Revision 097d348b (taxeditor): fix #2406 Allow editing supplemental data for determination event
Patrick Plitzner
02:27 PM feature request #7674 (Resolved): Show taxon descriptions in character matrix editor
Patrick Plitzner
02:16 PM bug #7772: Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
also rename attribute "term_id" Andreas Müller
02:15 PM bug #7772 (Closed): Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
to be consistent. If other TermBase classes are relevant they need an own table anyway, similar to the handling of (d... Andreas Müller
02:11 PM Revision eeede4bd (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
02:00 PM feature request #7771 (New): Format Misapplication search results as MAN, not as accepted taxa
If a search result contains a misapplication only as a taxon related to an accepted taxon in the search filter it sho... Andreas Müller
12:28 PM Revision 51308344 (taxeditor): ref #7674 Allow editing descriptions in details view
Patrick Plitzner
10:41 AM bug #7424 (In Progress): right click menu does not show up in name editor
this problem appears only for synonyms and the accepted taxon, for missapplied names and pro parte synonyms the menu ... Katja Luther
10:15 AM bug #7541 (In Progress): Insufficient rights lead to missing focus in name editor
Katja Luther
10:14 AM bug #7541: Insufficient rights lead to missing focus in name editor
the missing possibility to set the focus on the name editor was because of a wrong permission check. Katja Luther
10:10 AM Revision 86a05229 (taxeditor): ref #7541: fix permission handling in name editor
Katja Luther
08:19 AM Revision 5e15b964 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
08:16 AM Revision d9f9f1df (cdmlib): Merge branch 'develop' into taxonDecription
Patrick Plitzner

09/18/2018

04:22 PM Revision 59d588d3 (cdmlib-apps): fix #7769 implement postulated parental species as extension
Andreas Müller
04:20 PM Revision 91f5b910 (cdmlib-apps): ref #3992 fix sec/last scrutiny for MANs
Andreas Müller
04:14 PM Revision c29d1c8f (cdmlib-apps): cleanup and improve BM validators
Andreas Müller
04:13 PM Revision ede99ce1 (cdmlib-apps): cleanup
Andreas Müller
03:37 PM feature request #7770 (New): E+M: Handle extensions like "postulated parental species" in data po...
for details see #7769.
Postulated parental species are now implemented as TaxonBase Extensions of ExtensionType "p...
Andreas Müller
03:28 PM feature request #7769 (Resolved): E+M: Handle postulated parental species as taxon extensions
Postulated parental species are Name.Notes in BM. They should become Extensions of respective type, to be shown behin... Andreas Müller
01:57 PM feature request #4129: Allow filtering by OriginalSourceType
KL an ERS:
parallel zu den Import Issues für Euro+Med arbeiten wir auch die Editor Tickets ab, die Euro+Med betref...
Andreas Müller
01:28 PM Revision ca2ed7a5 (cdm-dataportal): ref #7766 adapting test to modified data - 2.
Andreas Kohlbecker
12:48 PM feature request #7283: Improvements for alternative identifier search
~~In search result the alternative identifier and the titlecache of the reference should be displayed (behind titleCa... Katja Luther
12:43 PM feature request #7283 (In Progress): Improvements for alternative identifier search
Katja Luther
12:48 PM Revision 1b6b0ad8 (taxeditor): ref #7283: add identifier string in reference selection if searche...
Katja Luther
12:17 PM Revision 8b2a5cc0 (cdm-dataportal): ref #7766 adapting test to modified data
Andreas Kohlbecker
11:58 AM Revision 68024392 (taxeditor): ref #7674 Adjust order of matrix rows
Patrick Plitzner
11:36 AM feature request #7345 (Resolved): [E+M] Common name references selectable in TaxEditor
added a new markerType 'common name reference' and everytime a reference is added as source reference a marker of thi... Katja Luther
11:33 AM Revision 809f6237 (taxeditor): ref #7345: every reference used for a common name gets a marker 'c...
Katja Luther
11:21 AM Revision 0373fd3e (cdmlib): ref #7345: add markertype commonNameReference
Katja Luther
07:52 AM Revision 2a2911e8 (cdmlib): javadoc
Andreas Müller
07:45 AM Revision e739cccb (cdmlib): ref #7745 filter getSynonymy for subtree - fix bug in checkExistsSubt...
Andreas Müller

09/17/2018

10:55 PM Revision 2941b4e5 (cdmlib): ref #7745 filter getSynonymy for subtree - fix compile issue in cdmli...
Andreas Müller
10:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
I will try to write tests for the remaining issues and move them to a new ticket. Andreas Müller
04:42 AM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
I moved synonym search and classification/subtree filters to new ticket #7764 as it is not really related to the topi... Andreas Müller
03:22 AM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
The classification filter does NOT have any effect in the webservice (1). But it has in the service(2)!
I tested (...
Andreas Müller
10:03 PM bug #7745 (Resolved): Subtree filter for dataportal services
By the way there might be not implemented webservices that need to be protected, e.g. for PolytomousKeys. I think the... Andreas Müller
10:02 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> Open issues:
>
> 3) http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/7114...
Andreas Müller
09:57 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> Open issues:
>
>
> 2) http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/...
Andreas Müller
04:53 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> Open issues:
>
> tested with subtree filter `Plumbaginaceae Juss. [#t10#1986#28#] uui...
Andreas Müller
02:59 PM bug #7745 (Feedback): Subtree filter for dataportal services
Open issues:
tested with subtree filter `Plumbaginaceae Juss. [#t10#1986#28#] uuid=0ad45274-c5cf-4a95-aa1b-dc698e7...
Andreas Kohlbecker
01:33 PM bug #7745 (Resolved): Subtree filter for dataportal services
Can you please do the final review and close if everything works as expected (but we will probably get user feedback ... Andreas Müller
09:01 AM bug #7745 (Feedback): Subtree filter for dataportal services
Have to reopen. Freetext search on context does not yet work as expected. Searching for "All" returns no result with ... Andreas Müller
08:48 AM bug #7745 (Closed): Subtree filter for dataportal services
From all what I tested it works. I never got an "external" taxon. Andreas Müller
09:54 PM Revision bc9db6bf (cdmlib): ref #7745 filter getSynonymy for subtree
Andreas Müller
09:54 PM Revision d5d8d750 (cdmlib): return error if passing not existing classification uuid to taxon sea...
Andreas Müller
09:53 PM Revision 5ca67609 (cdmlib): cleanup
Andreas Müller
08:01 PM feature request #7720: use new taxonRelationshipsDTO webservice for all taxon relations
Remaining issues handled in #7766 Andreas Müller
07:52 PM feature request #7720 (Resolved): use new taxonRelationshipsDTO webservice for all taxon relations
I think this was already done in 5.3. Maybe we can close **this** ticket as duplicate as #7658 includes by title all ... Andreas Müller
08:00 PM feature request #7658 (Closed): use new taxon relationship DTO webservice in portal
Close this ticket. Remaining (and new) issues moved to #7766 Andreas Müller
05:02 PM Revision bf312a2e (taxeditor): ref #7674 Adapt to service layer change
Patrick Plitzner
05:02 PM Revision e6b120bb (cdmlib): ref #7674 Fix LIE
Patrick Plitzner
04:47 PM Revision 79f9e857 (cdm-dataportal): ref #7767 checking all possible tag types for sec microrefere...
Andreas Kohlbecker
04:33 PM bug #7768 (Duplicate): wrong tag type for secReference microcitation
duplicates #7767 Andreas Müller
04:32 PM bug #7768 (Duplicate): wrong tag type for secReference microcitation
Andreas Kohlbecker
04:32 PM bug #7767 (Resolved): Incorrect handling of secundum detail reference in formatter
Applied in changeset commit:cdmlib|0ef1a15ed1a417160deec0b112f36a12de7363dc. Andreas Müller
04:29 PM bug #7767 (Closed): Incorrect handling of secundum detail reference in formatter
The sec detail is formatted as TagEnum.secundum not TagEnum.secMicroRef. This results in strange behavior on data por... Andreas Müller
04:32 PM Revision d969ee7a (cdmlib): cleanup
Andreas Müller
04:31 PM Revision 0ef1a15e (cdmlib): fix #7767 fix wrong TagEnum for sec detail
Andreas Müller
03:57 PM bug #7656 (Duplicate): Adapt inverse symbol for MisappliedName relationship type
Andreas Müller
03:56 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
AM an WGB:
die MANs sollten jetzt auch sichtbar sein und hoffentlich besser formatiert. Ein Problem ist noch, welc...
Andreas Müller
12:33 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
... and don't forget to adapt csv files. Andreas Müller
12:32 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
... and for pp Synonyms
~~~
UPDATE DefinedTermBase
SET symbol='⊃p.p.' , inverseSymbol = 'p.p.'
WHERE uuid= '8...
Andreas Müller
12:17 PM bug #7514 (In Progress): Change direct and inverse symbol for pro parte synonym and misapplied na...
Critical because in use already Andreas Müller
12:17 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
For misapplied names (we may think about using a larger dash, also maybe change idInVocabulary)
~~~
UPDATE Define...
Andreas Müller
03:54 PM Revision 0bc7725a (taxeditor): Fix initialization of specimen selection dialog
Patrick Plitzner
03:30 PM Revision e5926729 (cdm-dataportal): ref #7766 creating testcase - currently ignored
Andreas Kohlbecker
03:27 PM bug #7766 (Resolved): Remaining issues for using relationship DTO webservice in portal
for details see #7658
* taxonrelation footnotes missing (see #7658#note-51 for details)
* sort order of the rel...
Andreas Kohlbecker
03:04 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
Andreas Kohlbecker wrote:
> The `RegistrationWorkingsetPresenter`, `LoginPresenter` and `RegistationUI` still are no...
Andreas Kohlbecker
01:44 PM bug #7047 (In Progress): Vaadin UI and View scope beans are not always destroyed correctly
Andreas Kohlbecker
01:44 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
The `RegistrationWorkingsetPresenter`, `LoginPresenter` and `RegistationUI` still are not destroyed correctly. At lea... Andreas Kohlbecker
11:39 AM bug #7047 (Resolved): Vaadin UI and View scope beans are not always destroyed correctly
Andreas Kohlbecker
02:53 PM Revision 75d544f0 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
02:52 PM Revision 99113da9 (cdmlib): Merge branch 'develop' into taxonDecription
Patrick Plitzner
02:51 PM Revision 437d2b64 (taxeditor): minor
Katja Luther
02:22 PM task #7757 (Closed): Replace deprecated hibernate @Index annotation
The creation of a new database works as expected, the creation of the index works without exception and the search wo... Katja Luther
01:28 PM task #7757: Replace deprecated hibernate @Index annotation
Please review, e.g. by creating a new database with the new code and compare if all table names and indexes work simi... Andreas Müller
02:14 PM bug #7638 (Resolved): problem with media data missing meta data
Andreas Müller
01:50 PM feature request #7644 (Closed): Add "continued" flag to (Verbatim)Timeperiod
Andreas Kohlbecker
01:23 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
The code changes look ok. Andreas Kohlbecker
01:42 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
There is still a comma missing beetween the types if there are >1 types. Andreas Müller
01:30 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
We should think about throwing an exception in the moment when the cacher is used incorrectly (e.g. for volatile obje... Andreas Müller
01:25 PM feature request #7765 (New): Advanced UI to define the subtree filter in data portal
Follow up from #7759 Andreas Müller
01:23 PM bug #7759 (Closed): classification subtreefilter settings in portal
Yes we can close this ticket. But maybe we should create a follow up ticket for easier defining the subtree? Knowing ... Andreas Müller
12:53 PM bug #7294 (Closed): keys block can not be disabled in tabless taxon page
this obviously works now Andreas Kohlbecker
12:36 PM bug #7691 (Closed): Empty "Bibliography" section
*Nepenthes ampullacea* is now without the empty Bibliography section, so this works now! Andreas Kohlbecker
11:43 AM feature request #7408: [E+M] Support for preferred common names in data portal
This is soon required for E+M Andreas Müller
11:33 AM task #7420 (Feedback): Import for higher taxon graph for phycobank
Needs to be adapted Andreas Müller
11:28 AM Revision c172618f (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
11:28 AM Revision 9efc1615 (cdm-server): updating poms for branch'release/5.3.0' with non-snapshot versions
jenkins
11:20 AM bug #7085 (New): cdmserver logfiles getting too big, use DailyRollingFileAppender
Andreas Kohlbecker
11:19 AM Revision da30015f (cdm-webapp): Merge branch 'release/5.3.0' into develop
jenkins
11:19 AM Revision 8b425a99 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
11:19 AM Revision 4fd4a1fd (cdm-webapp): updating poms for branch'release/5.3.0' with non-snapshot versions
jenkins
11:19 AM Revision 99cdb3ef (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.3.0
jenkins
11:19 AM Revision 05bb4a08 (taxeditor): Merge branch 'release/5.3.0' into develop
jenkins
11:19 AM Revision bd05baf3 (taxeditor): Merge branch 'release/5.3.0'
jenkins
11:18 AM Revision 0367f111 (cdm-vaadin): Merge branch 'release/5.3.0' into develop
jenkins
11:18 AM Revision 0ba46ce4 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
11:14 AM Revision e65d391e (cdm-dataportal): Merge branch 'release/5.3.0' into develop
jenkins
11:14 AM Revision b3cf03c4 (cdm-vaadin): updating poms for branch'release/5.3.0' with non-snapshot versions
jenkins
11:14 AM Revision 954051e2 (cdm-dataportal): updating poms for branch'release/5.3.0' with non-snapshot ver...
jenkins
11:14 AM Revision 4c07fd1e (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0
jenkins
11:14 AM Revision 420900d7 (cdm-dataportal): release-preparation: production level css
jenkins
11:14 AM Revision 4402420e (cdmlib): Updating develop poms back to pre merge state
jenkins
11:14 AM Revision 85e49a21 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
11:14 AM Revision b035bb12 (cdmlib): Merge branch 'master' into develop
jenkins
11:14 AM Revision e2e042b7 (cdmlib): Merge branch 'release/5.3.0'
jenkins
11:11 AM bug #7756: org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice rela...
Andreas Müller wrote:
> Unfortunately the solution is not complete for includeUnpublished = true.
>
> In this cas...
Andreas Kohlbecker
10:56 AM Revision 4672679d (cdmlib): updating poms for branch'release/5.3.0' with non-snapshot versions
jenkins
10:50 AM Revision 2f2824a5 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.3.0-SN...
jenkins
10:50 AM Revision e8a4f976 (cdm-webapp): updating poms for 5.4.0-SNAPSHOT development
jenkins
10:50 AM Revision 023f2279 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.4.0-SN...
jenkins
10:50 AM Revision 43803bca (taxeditor): Updated version in pom / project files to taxeditor version : 5.4....
jenkins
10:50 AM Revision 832b8251 (taxeditor): Updated version in pom / project files to taxeditor version : 5.3....
jenkins
10:48 AM Revision dd6235d4 (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0-SNAPSHOT
jenkins
10:48 AM Revision 385bbd80 (cdm-vaadin): updating poms for 5.4.0-SNAPSHOT development
jenkins
10:47 AM Revision 3da39777 (cdm-vaadin): jenkins bumping cdmlib.version to 5.4.0-SNAPSHOT
jenkins
10:47 AM Revision 97232390 (cdm-dataportal): updating poms for 5.4.0-SNAPSHOT development
jenkins
10:47 AM Revision 1cfc433b (cdm-server): updating poms for 5.4.0-SNAPSHOT development
jenkins
10:44 AM Revision 29057537 (cdmlib): updating poms for 5.4.0-SNAPSHOT development
jenkins
10:19 AM Revision 9e76e997 (cdmlib): ref #7745 fix failing freetext search in facts freetext search
Andreas Müller
10:18 AM Revision e5dadfea (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
10:14 AM Revision 24134ae2 (cdmlib): ref #7745 fix failing freetext search in facts freetext search
Andreas Müller
10:12 AM Revision 949cae00 (cdmlib): ref #7750 Adapt services to new AssignmentStatus
Patrick Plitzner
10:03 AM Revision 351ba84b (cdmlib): adding additional testcase for QueryFactory
Andreas Kohlbecker
09:54 AM Revision 9ee6e0cd (cdmlib): ref #7745 fix failing freetext search in facts freetext search
Andreas Müller
09:48 AM Revision a15edbb0 (cdm-dataportal): temp. solution to avoid problem with dot characters in freete...
Andreas Kohlbecker
09:39 AM Revision 007bb138 (taxeditor): merge of NameEditorPropertyTester and fix NPE in ConceptContainer ...
Katja Luther
08:55 AM Revision c3f658e9 (cdmlib): Merge branch 'develop' into taxonDecription
Patrick Plitzner
04:41 AM bug #7764: Fix classification and synonym bug in taxon name freetext search
The bug introduced by #5890 and the synonym search bug should now be fixed. Please review. Andreas Müller
04:39 AM bug #7764 (Resolved): Fix classification and synonym bug in taxon name freetext search
Applied in changeset commit:cdmlib|0c3d038322ffb0292ef44c461391233c20785cec. Andreas Müller
04:25 AM bug #7764 (Resolved): Fix classification and synonym bug in taxon name freetext search
The bug is described in #5868#note-20 and previous.
* synonym search does not work with classification or subtree ...
Andreas Müller
04:39 AM Revision 0c3d0383 (cdmlib): fix #7764 revert incorrect tree parameter in search service and test ...
Andreas Müller
04:37 AM Revision 0add62bd (cdmlib): cleanup
Andreas Müller
04:36 AM Revision 38b1c817 (cdmlib): ref #7764 fix failing synonym search with classification or subtree f...
Andreas Müller

09/16/2018

01:05 AM Revision e98feeb2 (taxeditor): add English translation for par parte synonym (again after revert)
Andreas Müller
11:47 PM Revision 4e956294 (taxeditor): Revert "ref #7761: invalid designations are displayed in name edit...
This reverts commit 8e0e024c985ffbbe2ce2421270927059c9abf0cc. Andreas Müller
08:43 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
Andreas Müller wrote:
> OK, on th enew vesion of the cyprus database it works better. Especially the geo-search work...
Andreas Müller
07:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
OK, on th enew vesion of the cyprus database it works better. Especially the geo-search works better.
But synonym ...
Andreas Müller
02:52 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
The area search has a problem. Searching for "V*" and division1 returns NO result.
Searching for "*".
Searching ...
Andreas Müller
02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
was it like this before. Is the sorting by some kind of percentage? Andreas Müller
02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
The search seems not to be sorted. This is what I get for "V*"
Vitex
Vitis vinifera L.
Vitis
Vulpia brevis Bois...
Andreas Müller
02:37 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
For names with multiple whitespaces it is even more tricky.
*wilhelm* returns "Achillea santolinoides subsp. wilhe...
Andreas Müller
02:32 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
Wildcards in the same word seem to work. I tested with "*chi*ll*" on test.cyprus.
However, "*chi*ll*san*" to find...
Andreas Müller
02:25 PM bug #5868 (Feedback): re-establish support for wildcard at start of query string (includes the qu...
I get a warning when searching for Achil* on test.cyprus. This is probably not related to this ticket but mention thi... Andreas Müller
07:20 PM feature request #7658: use new taxon relationship DTO webservice in portal
And ofcourse the footnotes for non-MAN data are still missing. #7658#note-37 or should this be fixed already? If yes,... Andreas Müller
07:15 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
Andreas Müller
07:15 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Kohlbecker wrote:
> all mentioned bugs fixed!
Tested the 2 issues. Both work.
So the only open issue i...
Andreas Müller
05:41 PM feature request #7658: use new taxon relationship DTO webservice in portal
This problem is not release critical. We can fix it in 5.4. Maybe only moving up ppSyn to top would be nice but if no... Andreas Müller
05:39 PM feature request #7658: use new taxon relationship DTO webservice in portal
The sort order is still not correct. We should first have pro parte/partial synonyms, then invalid designations, then... Andreas Müller
05:37 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
all mentioned bugs fixed! Andreas Kohlbecker
05:08 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Andreas Müller wrote:
> > "auct." (appended phrase) does not show up, e.g.
> >
> > * "...
Andreas Kohlbecker
05:00 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name...
Andreas Kohlbecker
03:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name" or "partial Misapplied ... Andreas Müller
03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> "auct." (appended phrase) does not show up, e.g.
>
> * "Achillea santolina" , non Test ...
Andreas Müller
03:27 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
Andreas Müller
03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal
"auct." (appended phrase) does not show up, e.g.
* "Achillea santolina" , non Test , but should be "Achillea ...
Andreas Müller
05:36 PM Revision 45aaf1fe (cdm-dataportal): depuplication of p.p.MAN and partial MAN with test
Andreas Kohlbecker
05:29 PM Revision e56e5d1c (cdm-dataportal): adding test case for no sensu but with Combination Authors an...
Andreas Kohlbecker
04:50 PM Revision 7400fb33 (cdmlib): allow nom status parsing without name (with ICNAFP as default)
Andreas Müller
04:49 PM Revision 60a3cd56 (cdmlib): ref #7761 add isInvalidDesignation to TaxonRelationshipType
Andreas Müller
04:27 PM Revision 891e2f48 (cdmlib): ref #7761 add isInvalidDesignation to TaxonRelationshipType
Andreas Müller
04:27 PM Revision 47bf9558 (cdmlib): make authenticationManager lazy to avoid circals during start up
Andreas Müller
04:17 PM Revision 26c22583 (taxeditor): add English translation for par parte synonym
Andreas Müller
03:25 PM Revision bafcf277 (cdm-dataportal): adapting xpaths in test framework to modified rendering of fo...
Andreas Kohlbecker

09/15/2018

03:15 PM task #7762: E+M: Handle "{non ..." annotations for misapplied names currently handled as appended...
~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
...
Andreas Müller
03:02 PM task #7762 (New): E+M: Handle "{non ..." annotations for misapplied names currently handled as ap...
... check the names against existing names with exactly same reference and replace name if possible, also remove appe... Andreas Müller
03:14 PM bug #7763: E+M (post?): Deduplicate "[non ..." blocking names for synonyms
~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
...
Andreas Müller
03:13 PM bug #7763 (New): E+M (post?): Deduplicate "[non ..." blocking names for synonyms
These are handled in BerlinModelTaxonRelationshipImport.handleSynonymNotes
About 150 cases, many of them easy to h...
Andreas Müller

09/14/2018

09:33 PM Revision a0557101 (cdm-dataportal): fix #5868 avoiding unneccesary "complex phrase" queries, fixe...
Andreas Kohlbecker
09:31 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
please review Andreas Kohlbecker
09:30 PM bug #5868 (Resolved): re-establish support for wildcard at start of query string (includes the qu...
Applied in changeset commit:cdmlib|d6bdbc3d4a6d81dd3298913e1a31b64d76b88211. Andreas Kohlbecker
09:30 PM Revision d6bdbc3d (cdmlib): fix #5868 restoring freetext search with leading wildcard and with em...
Andreas Kohlbecker
07:05 PM bug #7745 (Resolved): Subtree filter for dataportal services
Andreas Müller
03:16 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Kohlbecker wrote:
> Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs ...
Andreas Kohlbecker
03:14 PM Revision a9dc4b35 (cdm-dataportal): ref #7658 other relationship reprentation based on DTOs fully...
Andreas Kohlbecker
03:12 PM Revision 31ab4cf9 (cdm-dataportal): ref #7686 Change label for no type status
Patrick Plitzner
02:27 PM Revision 7070571d (taxeditor): ref #7761: adapt property tester
Katja Luther
02:23 PM bug #7686: Specimen title cache issues in data portal specimen table
The full titleCache is now available and no warning anymore: http://test.e-taxonomy.eu/dataportal/preview/cyprus/cdm_... Andreas Müller
01:36 PM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
The titleCache issue is fixed.
I do not get the warnings on my local copy of the cyprus data base so I am not able...
Patrick Plitzner
01:59 PM Revision 9657122e (cdmlib): ref #7760 Show name authors for type designations
Patrick Plitzner
01:45 PM Revision b7299e98 (taxeditor): ref #7761: fragment.xmi and plugin.properties file for invalid des...
Katja Luther
01:43 PM Revision 8e0e024c (taxeditor): ref #7761: invalid designations are displayed in name editor and d...
Katja Luther
01:42 PM Revision 619ccb21 (cdmlib): ref #7745 fix failing pathFrom if subtree is null
Andreas Müller
01:39 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
Patrick Plitzner
01:39 PM Revision 7118b734 (cdmlib): ref #7761: add isInvalidDeisgnation() method to taxon
Katja Luther
01:37 PM feature request #7761 (Closed): Invalid designations should be displayed like misapplied names in...
The taxon relationship invalid designation should be displayed like MAN and pro parte synonyms in editor. Katja Luther
01:34 PM Revision 0b4ac33b (cdm-dataportal): ref #7686 Fix NPE during specimen title generation
Patrick Plitzner
01:34 PM Revision d961cf30 (cdm-dataportal): ref #7759 adding more subtreefilter url patterns
Andreas Kohlbecker
01:24 PM Revision 87bf25dd (cdm-dataportal): ref #7686 Show titleCache as title of specimen page
Patrick Plitzner
12:28 PM Revision 4518f4b5 (cdmlib): ref #7745 upgrading springfox-swagger2 to circumvent bug related to @...
Andreas Kohlbecker
11:35 AM bug #7047 (Feedback): Vaadin UI and View scope beans are not always destroyed correctly
this should also be fixed now that #7742 is solved
Andreas Kohlbecker
11:25 AM Revision d1e04696 (cdmlib): cleanup
Andreas Müller
11:24 AM Revision d3dd860c (cdmlib): ref #7745 switch of required in getTaxonNodes
Andreas Müller
11:24 AM Revision 1251ffed (cdmlib): ref #7745 childNodesOf implemented
Andreas Müller
11:15 AM bug #7759: classification subtreefilter settings in portal
fertig! das filtern im Portal scheint nun zu funktionieren.
Andreas Kohlbecker
11:14 AM Revision 6e2a9ba9 (cdm-dataportal): ref #7759 adding more subtreefilter url patterns and commenti...
Andreas Kohlbecker
11:10 AM Revision 3769d06b (cdmlib): ref #7745 some exception handling for subtree filter
Andreas Müller
10:59 AM Revision fe2906f6 (cdmlib): de-dublicating doGetTaxonNodes() controller methods
Andreas Kohlbecker
10:07 AM Revision a8337363 (cdmlib): ref #7745 fixing workaround for override methods
Andreas Müller
09:43 AM Revision 5f218626 (cdmlib): ref #7745 workaround for duplicate TaxonPortalController getTaxonNode...
Andreas Müller
09:36 AM Revision a6150f24 (cdmlib): ref #7745 workaround for duplicate TaxonController get Method (for te...
Andreas Müller
09:24 AM Revision ba0ae53c (cdmlib): ref #7745 workaround for duplicate TaxonController get Method (for te...
Andreas Müller

09/13/2018

11:08 PM Revision d0df75bd (cdmlib): ref #7745 add subtree filter to missing methods (childNodesOf is stil...
Andreas Müller
11:05 PM Revision 8616c840 (cdmlib): cleanup
Andreas Müller
05:57 PM bug #7745: Subtree filter for dataportal services
Also the following webservices need to get a subtree filter:
* /portal/taxon/{uuid}
* /portal/taxon/{uuid}/taxo...
Andreas Kohlbecker
05:46 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> the query parameter should be the same in all webservice uris: `subtree`
DONE: commit...
Andreas Kohlbecker
05:43 PM bug #7745: Subtree filter for dataportal services
the query parameter should be the same in all webservice uris: `subtree` Andreas Kohlbecker
05:45 PM Revision 905f70dc (cdmlib): ref #7745 harmonizing subtree query parameters
Andreas Kohlbecker
05:44 PM Revision 9bce681c (cdmlib): ref #7759 additional TaxonNode webservice endpoint and solving loggin...
Andreas Kohlbecker
05:37 PM bug #7759 (Resolved): classification subtreefilter settings in portal
Applied in changeset commit:cdm-dataportal|80d21b78a68c7c45042e9b14b1e628e62cc7c1fc. Andreas Kohlbecker
03:49 PM bug #7759 (Closed): classification subtreefilter settings in portal
As fist step we need a simple subtreefilter field which takes the UUID of a TaxonNode.
This uuid is to be used as...
Andreas Kohlbecker
05:37 PM Revision 80d21b78 (cdm-dataportal): fix #7759 implementing classification subtree filtering
Andreas Kohlbecker
04:49 PM feature request #7760 (New): Specimen compressed table issues
**Andreas**:
~~~
hier scheint mir noch einiges offen. V.a. nehme ich Norbert und Tilo mit in cc, weil sie ja für ...
Patrick Plitzner
04:41 PM Revision 25fc25ca (cdm-dataportal): ref #7686 Change label of specimen page link
Patrick Plitzner
03:46 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRe...
this method is also used for the synonyms, so this is not solved or obsoletd by #7658 Andreas Kohlbecker
03:43 PM feature request #7658: use new taxon relationship DTO webservice in portal
Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs fehlen noch - kommt in 3.4! Andreas Kohlbecker
03:16 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
Andreas Müller
03:12 PM feature request #7658: use new taxon relationship DTO webservice in portal
please review again Andreas Kohlbecker
03:42 PM Revision 18c71cd1 (cdm-dataportal): ref #7658 using the taxonRelationDTO for other relationshipt ...
Andreas Kohlbecker
03:17 PM task #7758 (New): Manual cleanup after E+M import
The following tasks should be done manually after final E+M import:

* remaining issues from logfile
* deduplic...
Andreas Müller
03:11 PM Revision 23ebb91f (cdm-dataportal): ref #7658 fixing final problems in MAN display related to app...
Andreas Kohlbecker
12:38 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webs...
Unfortunately the solution is not complete for includeUnpublished = true.
In this case you again get an NPE as you...
Andreas Müller
12:01 PM Revision dc231846 (cdmlib): fix #7757 first freetext search test working for subtree filter
Andreas Müller
11:38 AM Revision 0f5ab2e8 (cdmlib): cleanup
Andreas Müller
11:37 AM task #7757 (Resolved): Replace deprecated hibernate @Index annotation
Applied in changeset commit:cdmlib|2b2a66ac3dcc84707a5c5bc631b1eb0241701cf6. Andreas Müller
11:37 AM task #7757 (Closed): Replace deprecated hibernate @Index annotation
... from model classes Andreas Müller
11:37 AM Revision 2b2a66ac (cdmlib): fix #7757 removed all deprecated hibernate @Index (and @Table) annota...
Andreas Müller
10:27 AM Revision 514ee70c (cdmlib): ref #7745 implement treeindex search in freetext search (untested)
Andreas Müller
10:25 AM Revision 1dc8e923 (cdmlib): cleanup
Andreas Müller
10:20 AM Revision 67d89439 (cdmlib): rename AbstractRelationshipEdge.relationshipType to be more generic
Andreas Müller

09/12/2018

12:38 AM bug #7745: Subtree filter for dataportal services
Subtree filter is now implemented for (rankSpecific)rootNotes and simple taxon search. API exists also for freetext s... Andreas Müller
12:36 AM bug #7745 (In Progress): Subtree filter for dataportal services
Andreas Müller
12:00 AM Revision 8b00105b (cdmlib): ref #7745 add subtree parameter to freetext search methods
Andreas Müller
 

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